Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033380.01.T02 | PNY08923.1 | 96.117 | 103 | 4 | 0 | 1 | 103 | 38 | 140 | 3.86E-69 | 213 |
| MsG0680033380.01.T01 | PNY08923.1 | 96.35 | 137 | 5 | 0 | 1 | 137 | 4 | 140 | 1.02E-95 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033380.01.T01 | Q84K70 | 75 | 136 | 34 | 0 | 2 | 137 | 5 | 140 | 7.98E-64 | 194 |
| MsG0680033380.01.T02 | Q84K70 | 73.267 | 101 | 27 | 0 | 3 | 103 | 40 | 140 | 4.23E-53 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033380.01.T01 | A0A2K3P106 | 96.350 | 137 | 5 | 0 | 1 | 137 | 4 | 140 | 4.85e-96 | 282 |
| MsG0680033380.01.T02 | A0A2K3P106 | 96.117 | 103 | 4 | 0 | 1 | 103 | 38 | 140 | 1.84e-69 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0280006324.01 | MsG0680033380.01 | 0.820754 | 5.803682e-53 | 4.632568e-50 |
| MsG0380013475.01 | MsG0680033380.01 | 0.807729 | 4.384590e-50 | 2.460753e-47 |
| MsG0680033380.01 | MsG0780038424.01 | 0.800552 | 1.365869e-48 | 6.378338e-46 |
| MsG0280008362.01 | MsG0680033380.01 | 0.809009 | 2.338224e-50 | 1.357159e-47 |
| MsG0280009794.01 | MsG0680033380.01 | 0.814418 | 1.556466e-51 | 1.043859e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033380.01.T02 | MTR_6g045203 | 95.146 | 103 | 5 | 0 | 1 | 103 | 38 | 140 | 1.45e-72 | 212 |
| MsG0680033380.01.T02 | MTR_1g078090 | 34.259 | 108 | 57 | 4 | 1 | 103 | 87 | 185 | 2.09e-13 | 63.2 |
| MsG0680033380.01.T02 | MTR_1g030630 | 34.343 | 99 | 51 | 4 | 5 | 103 | 63 | 147 | 7.38e-11 | 55.5 |
| MsG0680033380.01.T02 | MTR_3g073670 | 33.654 | 104 | 54 | 5 | 1 | 103 | 60 | 149 | 7.65e-11 | 55.5 |
| MsG0680033380.01.T01 | MTR_6g045203 | 95.620 | 137 | 6 | 0 | 1 | 137 | 4 | 140 | 5.51e-91 | 260 |
| MsG0680033380.01.T01 | MTR_1g078090 | 36.170 | 141 | 75 | 5 | 2 | 137 | 55 | 185 | 3.22e-24 | 92.4 |
| MsG0680033380.01.T01 | MTR_2g091235 | 37.584 | 149 | 72 | 8 | 1 | 137 | 3 | 142 | 1.97e-23 | 89.4 |
| MsG0680033380.01.T01 | MTR_3g087770 | 36.765 | 136 | 71 | 4 | 2 | 137 | 32 | 152 | 1.02e-21 | 85.1 |
| MsG0680033380.01.T01 | MTR_1g030630 | 34.559 | 136 | 74 | 5 | 2 | 137 | 27 | 147 | 3.29e-21 | 83.6 |
| MsG0680033380.01.T01 | MTR_3g073670 | 36.154 | 130 | 68 | 4 | 9 | 137 | 34 | 149 | 3.65e-21 | 83.6 |
| MsG0680033380.01.T01 | MTR_6g026890 | 35.664 | 143 | 75 | 9 | 1 | 137 | 17 | 148 | 5.97e-21 | 82.8 |
| MsG0680033380.01.T01 | MTR_5g022620 | 36.879 | 141 | 72 | 6 | 1 | 137 | 30 | 157 | 7.20e-21 | 83.2 |
| MsG0680033380.01.T01 | MTR_3g117890 | 33.566 | 143 | 74 | 6 | 2 | 137 | 28 | 156 | 1.26e-20 | 82.4 |
| MsG0680033380.01.T01 | MTR_8g091420 | 34.307 | 137 | 75 | 5 | 2 | 137 | 31 | 153 | 4.68e-20 | 80.9 |
| MsG0680033380.01.T01 | MTR_4g073040 | 35.971 | 139 | 74 | 4 | 2 | 137 | 30 | 156 | 6.10e-20 | 80.5 |
| MsG0680033380.01.T01 | MTR_5g025150 | 31.884 | 138 | 75 | 6 | 2 | 137 | 25 | 145 | 9.03e-19 | 77.4 |
| MsG0680033380.01.T01 | MTR_6g003990 | 34.043 | 141 | 71 | 7 | 2 | 137 | 32 | 155 | 2.05e-16 | 71.2 |
| MsG0680033380.01.T01 | MTR_6g003990 | 33.582 | 134 | 68 | 6 | 9 | 137 | 1 | 118 | 7.86e-16 | 68.9 |
| MsG0680033380.01.T01 | MTR_7g083060 | 29.927 | 137 | 79 | 6 | 2 | 137 | 26 | 146 | 1.88e-15 | 68.6 |
| MsG0680033380.01.T01 | MTR_5g055020 | 29.412 | 136 | 81 | 5 | 2 | 137 | 27 | 147 | 1.49e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680033380.01.T02 | AT3G48970 | 73.267 | 101 | 27 | 0 | 3 | 103 | 38 | 138 | 4.23e-54 | 165 |
| MsG0680033380.01.T02 | AT3G48970 | 73.267 | 101 | 27 | 0 | 3 | 103 | 38 | 138 | 4.23e-54 | 165 |
| MsG0680033380.01.T02 | AT3G48970 | 73.267 | 101 | 27 | 0 | 3 | 103 | 40 | 140 | 4.31e-54 | 165 |
| MsG0680033380.01.T02 | AT3G56891 | 31.933 | 119 | 63 | 3 | 1 | 103 | 27 | 143 | 4.83e-14 | 63.9 |
| MsG0680033380.01.T02 | AT3G56891 | 31.933 | 119 | 63 | 3 | 1 | 103 | 50 | 166 | 7.59e-14 | 63.9 |
| MsG0680033380.01.T02 | AT2G18196 | 33.333 | 108 | 58 | 4 | 1 | 103 | 27 | 125 | 9.50e-13 | 60.1 |
| MsG0680033380.01.T02 | AT2G18196 | 33.333 | 108 | 58 | 4 | 1 | 103 | 80 | 178 | 4.09e-12 | 59.7 |
| MsG0680033380.01.T02 | AT4G08570 | 35.644 | 101 | 50 | 4 | 4 | 103 | 64 | 150 | 1.31e-11 | 57.8 |
| MsG0680033380.01.T02 | AT1G71050 | 35.354 | 99 | 52 | 3 | 5 | 103 | 66 | 152 | 3.12e-11 | 56.6 |
| MsG0680033380.01.T01 | AT3G48970 | 75.000 | 136 | 34 | 0 | 2 | 137 | 5 | 140 | 8.13e-65 | 194 |
| MsG0680033380.01.T01 | AT3G48970 | 75.000 | 136 | 34 | 0 | 2 | 137 | 3 | 138 | 9.28e-65 | 194 |
| MsG0680033380.01.T01 | AT3G48970 | 75.000 | 136 | 34 | 0 | 2 | 137 | 3 | 138 | 9.28e-65 | 194 |
| MsG0680033380.01.T01 | AT3G56891 | 34.641 | 153 | 81 | 4 | 1 | 137 | 17 | 166 | 1.43e-26 | 97.8 |
| MsG0680033380.01.T01 | AT3G56891 | 34.483 | 145 | 77 | 3 | 9 | 137 | 1 | 143 | 3.20e-26 | 96.3 |
| MsG0680033380.01.T01 | AT4G08570 | 37.956 | 137 | 70 | 4 | 2 | 137 | 28 | 150 | 8.62e-24 | 90.5 |
| MsG0680033380.01.T01 | AT2G18196 | 36.364 | 132 | 70 | 4 | 11 | 137 | 3 | 125 | 4.30e-23 | 87.8 |
| MsG0680033380.01.T01 | AT2G18196 | 36.364 | 132 | 70 | 4 | 11 | 137 | 56 | 178 | 2.37e-22 | 87.4 |
| MsG0680033380.01.T01 | AT1G06330 | 35.443 | 158 | 69 | 9 | 2 | 137 | 4 | 150 | 8.39e-22 | 85.1 |
| MsG0680033380.01.T01 | AT1G71050 | 36.029 | 136 | 74 | 4 | 2 | 137 | 30 | 152 | 2.25e-21 | 84.3 |
| MsG0680033380.01.T01 | AT5G66110 | 36.429 | 140 | 72 | 5 | 2 | 137 | 21 | 147 | 6.96e-20 | 80.1 |
| MsG0680033380.01.T01 | AT5G66110 | 36.429 | 140 | 72 | 5 | 2 | 137 | 21 | 147 | 6.96e-20 | 80.1 |
| MsG0680033380.01.T01 | AT5G66110 | 36.090 | 133 | 69 | 4 | 9 | 137 | 1 | 121 | 1.76e-19 | 78.6 |
| MsG0680033380.01.T01 | AT4G10465 | 35.971 | 139 | 78 | 5 | 2 | 137 | 53 | 183 | 4.75e-19 | 79.0 |
| MsG0680033380.01.T01 | AT4G35060 | 34.532 | 139 | 76 | 4 | 2 | 137 | 27 | 153 | 1.28e-18 | 77.0 |
| MsG0680033380.01.T01 | AT1G22990 | 34.307 | 137 | 74 | 6 | 2 | 137 | 31 | 152 | 2.17e-18 | 76.6 |
| MsG0680033380.01.T01 | AT4G39700 | 37.410 | 139 | 70 | 5 | 2 | 137 | 34 | 158 | 2.26e-18 | 76.6 |
| MsG0680033380.01.T01 | AT1G22990 | 34.615 | 130 | 70 | 5 | 9 | 137 | 32 | 147 | 3.27e-18 | 75.9 |
| MsG0680033380.01.T01 | AT5G17450 | 35.036 | 137 | 73 | 6 | 2 | 137 | 28 | 149 | 4.88e-17 | 72.8 |
| MsG0680033380.01.T01 | AT4G38580 | 31.159 | 138 | 81 | 3 | 2 | 137 | 28 | 153 | 6.62e-17 | 72.8 |
| MsG0680033380.01.T01 | AT4G38580 | 31.159 | 138 | 81 | 3 | 2 | 137 | 28 | 153 | 6.62e-17 | 72.8 |
| MsG0680033380.01.T01 | AT1G29100 | 31.333 | 150 | 84 | 7 | 1 | 137 | 4 | 147 | 1.53e-14 | 66.2 |
| MsG0680033380.01.T01 | AT1G29100 | 30.612 | 147 | 83 | 7 | 4 | 137 | 1 | 141 | 4.01e-13 | 62.8 |
| MsG0680033380.01.T01 | AT5G17450 | 35.714 | 112 | 57 | 5 | 27 | 137 | 8 | 105 | 4.21e-12 | 58.9 |
Find 26 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCCTTCACAATCAAGATT+TGG | 0.367580 | 6:-63646660 | None:intergenic |
| AGATGATGTAGAAGTTGAAA+TGG | 0.396295 | 6:+63647960 | MsG0680033380.01.T01:CDS |
| AAAATGAAGTAAAATGAGTA+TGG | 0.404963 | 6:-63648089 | None:intergenic |
| TGAGTATGGCCTGGTAGAAA+TGG | 0.420345 | 6:-63648075 | None:intergenic |
| AATTAAAGAAAGCTCTCTTC+AGG | 0.426261 | 6:+63646691 | MsG0680033380.01.T01:CDS |
| TACAAAAGTGAAGCAACAAA+TGG | 0.472564 | 6:+63648156 | MsG0680033380.01.T01:CDS |
| AAGATAACAGCAAGAGGGTA+TGG | 0.495475 | 6:+63647991 | MsG0680033380.01.T01:CDS |
| TTGAAAGCAATAAAACGTGC+AGG | 0.503053 | 6:+63648033 | MsG0680033380.01.T01:CDS |
| TAATGATTGACAATGTAACT+TGG | 0.520724 | 6:-63648120 | None:intergenic |
| TACATTATAGTGCAAGCATG+AGG | 0.547669 | 6:-63648267 | None:intergenic |
| AGTTGCTGTTGCATCTGATG+AGG | 0.552668 | 6:+63648215 | MsG0680033380.01.T01:CDS |
| ATTGTTGTAGAATATGGTTG+AGG | 0.553241 | 6:+63646629 | None:intergenic |
| GAAGTAAAATGAGTATGGCC+TGG | 0.553963 | 6:-63648084 | None:intergenic |
| GAACCATGGCCATTTCTACC+AGG | 0.554207 | 6:+63648066 | MsG0680033380.01.T01:CDS |
| AAAGCTCTCTTCAGGCTCAA+AGG | 0.558790 | 6:+63646699 | MsG0680033380.01.T01:CDS |
| GTACCAAATCTTGATTGTGA+AGG | 0.573579 | 6:+63646657 | MsG0680033380.01.T01:CDS |
| TACCAAATCTTGATTGTGAA+GGG | 0.580631 | 6:+63646658 | MsG0680033380.01.T01:CDS |
| TCACAGAAGATAACAGCAAG+AGG | 0.610426 | 6:+63647985 | MsG0680033380.01.T01:CDS |
| CAGGGAAAGCAGCAGAACCA+TGG | 0.611728 | 6:+63648052 | MsG0680033380.01.T01:CDS |
| CAGCAACTGAATAAACAGAA+GGG | 0.615737 | 6:-63648200 | None:intergenic |
| TGAAAGCAATAAAACGTGCA+GGG | 0.617732 | 6:+63648034 | MsG0680033380.01.T01:CDS |
| AGCAACTGAATAAACAGAAG+GGG | 0.630032 | 6:-63648199 | None:intergenic |
| ACAGCAACTGAATAAACAGA+AGG | 0.630530 | 6:-63648201 | None:intergenic |
| CACAGAAGATAACAGCAAGA+GGG | 0.638231 | 6:+63647986 | MsG0680033380.01.T01:CDS |
| TGGCCTGGTAGAAATGGCCA+TGG | 0.640241 | 6:-63648069 | None:intergenic |
| ACATTATAGTGCAAGCATGA+GGG | 0.647161 | 6:-63648266 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTAATAGAATAAAATTAA+TGG | + | Chr6:63646887-63646906 | MsG0680033380.01.T01:intron | 10.0% |
| !!! | CATTAATTTTATTCTATTAA+TGG | - | Chr6:63646889-63646908 | None:intergenic | 10.0% |
| !! | AAAATTAATGGTTAACATTA+GGG | + | Chr6:63646899-63646918 | MsG0680033380.01.T01:intron | 15.0% |
| !! | ATTATTAAAAAATATGGCAA+AGG | + | Chr6:63647127-63647146 | MsG0680033380.01.T01:intron | 15.0% |
| !! | ATTTACACTATTTACATAAT+AGG | - | Chr6:63647153-63647172 | None:intergenic | 15.0% |
| !! | GAAAAGAAAAAAAAATGATT+TGG | - | Chr6:63647274-63647293 | None:intergenic | 15.0% |
| !! | TAAAATTAATGGTTAACATT+AGG | + | Chr6:63646898-63646917 | MsG0680033380.01.T01:intron | 15.0% |
| !!! | AAAAAAAAATTGAAGTGTTA+AGG | + | Chr6:63647785-63647804 | MsG0680033380.01.T01:intron | 15.0% |
| !!! | AAAAAAAATTGAAGTGTTAA+GGG | + | Chr6:63647786-63647805 | MsG0680033380.01.T01:intron | 15.0% |
| !!! | AAAGAAGTAACATTTATTTT+TGG | - | Chr6:63647843-63647862 | None:intergenic | 15.0% |
| !!! | CACTTCAATTTTTTTTTTAA+TGG | - | Chr6:63647782-63647801 | None:intergenic | 15.0% |
| !!! | TTTTTTATTGTGTGATTTAT+AGG | + | Chr6:63647934-63647953 | MsG0680033380.01.T01:intron | 15.0% |
| !! | AAAATGAAGTAAAATGAGTA+TGG | - | Chr6:63648092-63648111 | None:intergenic | 20.0% |
| !! | AACAAACTTAAATGACTTTA+TGG | - | Chr6:63647426-63647445 | None:intergenic | 20.0% |
| !! | AACTTAGTTAACATTACAAA+TGG | - | Chr6:63647886-63647905 | None:intergenic | 20.0% |
| !! | ATTTGTAATGTTAACTAAGT+TGG | + | Chr6:63647885-63647904 | MsG0680033380.01.T01:intron | 20.0% |
| !! | GATATTAAATGTCAAAATTG+TGG | - | Chr6:63647009-63647028 | None:intergenic | 20.0% |
| !! | TAAACAATGTAAATCTGATT+TGG | - | Chr6:63647347-63647366 | None:intergenic | 20.0% |
| !! | TTTGTAATGTTAACTAAGTT+GGG | + | Chr6:63647886-63647905 | MsG0680033380.01.T01:intron | 20.0% |
| !!! | AATTGAGTATGATTTTAAGA+AGG | - | Chr6:63646941-63646960 | None:intergenic | 20.0% |
| !!! | ATTGAGTATGATTTTAAGAA+GGG | - | Chr6:63646940-63646959 | None:intergenic | 20.0% |
| !!! | ATTTGTGATCTTTAAGTTTA+AGG | + | Chr6:63647389-63647408 | MsG0680033380.01.T01:intron | 20.0% |
| ! | AAGATCACAAATTATCAACT+TGG | - | Chr6:63647381-63647400 | None:intergenic | 25.0% |
| ! | AGACGTTGAATTTATCTTAA+TGG | - | Chr6:63647082-63647101 | None:intergenic | 25.0% |
| ! | TAATGATTGACAATGTAACT+TGG | - | Chr6:63648123-63648142 | None:intergenic | 25.0% |
| ! | TATTTAAACAACCATTCTTG+AGG | + | Chr6:63647504-63647523 | MsG0680033380.01.T01:intron | 25.0% |
| ! | TGATAAATAGTCAACAAGAT+CGG | - | Chr6:63646977-63646996 | None:intergenic | 25.0% |
| !! | ACGTTTTCAATTTAGTCATT+CGG | + | Chr6:63647447-63647466 | MsG0680033380.01.T01:intron | 25.0% |
| !! | TAACTAAGTTGGGTAATATT+TGG | + | Chr6:63647896-63647915 | MsG0680033380.01.T01:intron | 25.0% |
| !! | TTTTTAATGGCAAATATTCG+TGG | - | Chr6:63647769-63647788 | None:intergenic | 25.0% |
| !!! | AAGTAATATTTTGGAGTGTT+TGG | + | Chr6:63647311-63647330 | MsG0680033380.01.T01:intron | 25.0% |
| !!! | TCACATCTGAAGTAATATTT+TGG | + | Chr6:63647302-63647321 | MsG0680033380.01.T01:intron | 25.0% |
| AATTAAAGAAAGCTCTCTTC+AGG | + | Chr6:63646691-63646710 | MsG0680033380.01.T01:CDS | 30.0% | |
| ACCATTGTCACAAGAAATAA+GGG | - | Chr6:63646768-63646787 | None:intergenic | 30.0% | |
| AGATGATGTAGAAGTTGAAA+TGG | + | Chr6:63647960-63647979 | MsG0680033380.01.T01:CDS | 30.0% | |
| GATAGACTAAATTGATGTTG+TGG | - | Chr6:63647473-63647492 | None:intergenic | 30.0% | |
| GCACATCAAATTTATTGTTG+TGG | - | Chr6:63647604-63647623 | None:intergenic | 30.0% | |
| TACAAAAGTGAAGCAACAAA+TGG | + | Chr6:63648156-63648175 | MsG0680033380.01.T01:CDS | 30.0% | |
| TACCAAATCTTGATTGTGAA+GGG | + | Chr6:63646658-63646677 | MsG0680033380.01.T01:CDS | 30.0% | |
| TTTGATTCAAACTCAGACAA+AGG | + | Chr6:63647726-63647745 | MsG0680033380.01.T01:intron | 30.0% | |
| ! | CATGTTTTCATGTGTAAGTT+TGG | + | Chr6:63647211-63647230 | MsG0680033380.01.T01:intron | 30.0% |
| ! | TCAAAGAAGATCGTTCATTT+TGG | + | Chr6:63647175-63647194 | MsG0680033380.01.T01:intron | 30.0% |
| ! | TTTTCTCAAGCTAACAAACT+AGG | + | Chr6:63647543-63647562 | MsG0680033380.01.T01:intron | 30.0% |
| !! | ATCGTTCATTTTGGTATAGA+GGG | + | Chr6:63647184-63647203 | MsG0680033380.01.T01:intron | 30.0% |
| ACAGCAACTGAATAAACAGA+AGG | - | Chr6:63648204-63648223 | None:intergenic | 35.0% | |
| ACATTATAGTGCAAGCATGA+GGG | - | Chr6:63648269-63648288 | None:intergenic | 35.0% | |
| AGCAACTGAATAAACAGAAG+GGG | - | Chr6:63648202-63648221 | None:intergenic | 35.0% | |
| CACCATTGTCACAAGAAATA+AGG | - | Chr6:63646769-63646788 | None:intergenic | 35.0% | |
| CAGCAACTGAATAAACAGAA+GGG | - | Chr6:63648203-63648222 | None:intergenic | 35.0% | |
| CTGGTATGAGTTATAGGATA+AGG | + | Chr6:63647692-63647711 | MsG0680033380.01.T01:intron | 35.0% | |
| GTACCAAATCTTGATTGTGA+AGG | + | Chr6:63646657-63646676 | MsG0680033380.01.T01:CDS | 35.0% | |
| GTCTAATAGTACCTCAAGAA+TGG | - | Chr6:63647518-63647537 | None:intergenic | 35.0% | |
| TACATTATAGTGCAAGCATG+AGG | - | Chr6:63648270-63648289 | None:intergenic | 35.0% | |
| TCTCAACTGGTATGAGTTAT+AGG | + | Chr6:63647686-63647705 | MsG0680033380.01.T01:intron | 35.0% | |
| TGAAAGCAATAAAACGTGCA+GGG | + | Chr6:63648034-63648053 | MsG0680033380.01.T01:CDS | 35.0% | |
| TTGAAAGCAATAAAACGTGC+AGG | + | Chr6:63648033-63648052 | MsG0680033380.01.T01:CDS | 35.0% | |
| TTTGATGTGCTGAGAGTAAT+AGG | + | Chr6:63647614-63647633 | MsG0680033380.01.T01:intron | 35.0% | |
| ! | CTTATTTCTTGTGACAATGG+TGG | + | Chr6:63646767-63646786 | MsG0680033380.01.T01:intron | 35.0% |
| ! | TCCCTTATTTCTTGTGACAA+TGG | + | Chr6:63646764-63646783 | MsG0680033380.01.T01:intron | 35.0% |
| ! | TGGGCCAAATAAACAGTTTT+CGG | + | Chr6:63646793-63646812 | MsG0680033380.01.T01:intron | 35.0% |
| !! | CAATGTAAATCTGATTTGGC+AGG | - | Chr6:63647343-63647362 | None:intergenic | 35.0% |
| !! | GATCGTTCATTTTGGTATAG+AGG | + | Chr6:63647183-63647202 | MsG0680033380.01.T01:intron | 35.0% |
| !!! | TGAGCATGTTTTGAGGATAT+TGG | + | Chr6:63646824-63646843 | MsG0680033380.01.T01:intron | 35.0% |
| AAGATAACAGCAAGAGGGTA+TGG | + | Chr6:63647991-63648010 | MsG0680033380.01.T01:CDS | 40.0% | |
| AGTCCTTGTGTTTCGTCATT+TGG | + | Chr6:63647650-63647669 | MsG0680033380.01.T01:intron | 40.0% | |
| ATGTGCTGAGAGTAATAGGA+TGG | + | Chr6:63647618-63647637 | MsG0680033380.01.T01:intron | 40.0% | |
| CACAGAAGATAACAGCAAGA+GGG | + | Chr6:63647986-63648005 | MsG0680033380.01.T01:CDS | 40.0% | |
| CACCCTTCACAATCAAGATT+TGG | - | Chr6:63646663-63646682 | None:intergenic | 40.0% | |
| CTCAAGCTAACAAACTAGGA+TGG | + | Chr6:63647547-63647566 | MsG0680033380.01.T01:intron | 40.0% | |
| CTTGTGTTTCGTCATTTGGA+GGG | + | Chr6:63647654-63647673 | MsG0680033380.01.T01:intron | 40.0% | |
| GAAGTAAAATGAGTATGGCC+TGG | - | Chr6:63648087-63648106 | None:intergenic | 40.0% | |
| TCACAGAAGATAACAGCAAG+AGG | + | Chr6:63647985-63648004 | MsG0680033380.01.T01:CDS | 40.0% | |
| TGCCCCGAAAACTGTTTATT+TGG | - | Chr6:63646800-63646819 | None:intergenic | 40.0% | |
| ! | GCAGATATGAGCATGTTTTG+AGG | + | Chr6:63646817-63646836 | MsG0680033380.01.T01:intron | 40.0% |
| ! | GGCCAAATAAACAGTTTTCG+GGG | + | Chr6:63646795-63646814 | MsG0680033380.01.T01:intron | 40.0% |
| ! | GGGCCAAATAAACAGTTTTC+GGG | + | Chr6:63646794-63646813 | MsG0680033380.01.T01:intron | 40.0% |
| ! | GTCAACAAGATCGGTCATTT+TGG | - | Chr6:63646968-63646987 | None:intergenic | 40.0% |
| AAAGCTCTCTTCAGGCTCAA+AGG | + | Chr6:63646699-63646718 | MsG0680033380.01.T01:CDS | 45.0% | |
| AGGGTTGAGTATCTCTCAAC+TGG | + | Chr6:63647673-63647692 | MsG0680033380.01.T01:intron | 45.0% | |
| CCTCCAAATGACGAAACACA+AGG | - | Chr6:63647656-63647675 | None:intergenic | 45.0% | |
| CCTTGTGTTTCGTCATTTGG+AGG | + | Chr6:63647653-63647672 | MsG0680033380.01.T01:intron | 45.0% | |
| GAAACACAAGGACTTCCAGT+CGG | - | Chr6:63647644-63647663 | None:intergenic | 45.0% | |
| TGAGTATGGCCTGGTAGAAA+TGG | - | Chr6:63648078-63648097 | None:intergenic | 45.0% | |
| ! | AGTTGCTGTTGCATCTGATG+AGG | + | Chr6:63648215-63648234 | MsG0680033380.01.T01:CDS | 45.0% |
| !! | CTTGTGACAATGGTGGACAT+GGG | + | Chr6:63646774-63646793 | MsG0680033380.01.T01:intron | 45.0% |
| !! | TCTTGTGACAATGGTGGACA+TGG | + | Chr6:63646773-63646792 | MsG0680033380.01.T01:intron | 45.0% |
| !! | TTATACATTATTAAAAAATA+TGG | + | Chr6:63647121-63647140 | MsG0680033380.01.T01:intron | 5.0% |
| AGAGTAATAGGATGGCCGAC+TGG | + | Chr6:63647626-63647645 | MsG0680033380.01.T01:intron | 50.0% | |
| GAACCATGGCCATTTCTACC+AGG | + | Chr6:63648066-63648085 | MsG0680033380.01.T01:CDS | 50.0% | |
| CAGGGAAAGCAGCAGAACCA+TGG | + | Chr6:63648052-63648071 | MsG0680033380.01.T01:CDS | 55.0% | |
| TGGCCTGGTAGAAATGGCCA+TGG | - | Chr6:63648072-63648091 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 63646642 | 63648290 | 63646642 | ID=MsG0680033380.01;Name=MsG0680033380.01 |
| Chr6 | mRNA | 63646642 | 63648290 | 63646642 | ID=MsG0680033380.01.T01;Parent=MsG0680033380.01;Name=MsG0680033380.01.T01;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0.5|2|0|137 |
| Chr6 | exon | 63647956 | 63648290 | 63647956 | ID=MsG0680033380.01.T01:exon:19139;Parent=MsG0680033380.01.T01 |
| Chr6 | exon | 63646642 | 63646720 | 63646642 | ID=MsG0680033380.01.T01:exon:19138;Parent=MsG0680033380.01.T01 |
| Chr6 | CDS | 63646642 | 63646720 | 63646642 | ID=MsG0680033380.01.T01:cds;Parent=MsG0680033380.01.T01 |
| Chr6 | CDS | 63647956 | 63648290 | 63647956 | ID=MsG0680033380.01.T01:cds;Parent=MsG0680033380.01.T01 |
| Chr6 | mRNA | 63647979 | 63648290 | 63647979 | ID=MsG0680033380.01.T02;Parent=MsG0680033380.01;Name=MsG0680033380.01.T02;_AED=0.18;_eAED=0.18;_QI=0|-1|0|1|-1|0|1|0|103 |
| Chr6 | exon | 63647979 | 63648290 | 63647979 | ID=MsG0680033380.01.T02:exon:19140;Parent=MsG0680033380.01.T02 |
| Chr6 | CDS | 63647979 | 63648290 | 63647979 | ID=MsG0680033380.01.T02:cds;Parent=MsG0680033380.01.T02 |
| Gene Sequence |
| Protein sequence |
