AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009794.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009794.01.T01 MTR_2g070730 93.634 377 23 1 35 410 5 381 0.0 631
MsG0280009794.01.T01 MTR_8g008740 88.701 177 20 0 234 410 305 481 6.95e-88 275
MsG0280009794.01.T01 MTR_4g461060 32.353 204 110 6 211 406 431 614 1.13e-14 76.3
MsG0280009794.01.T01 MTR_4g461060 32.353 204 110 6 211 406 434 617 1.18e-14 76.3
MsG0280009794.01.T01 MTR_1g066850 29.442 197 115 6 224 409 403 586 9.24e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009794.01.T01 AT1G17140 48.011 377 154 11 37 410 7 344 1.48e-84 262
MsG0280009794.01.T01 AT1G17140 48.011 377 154 11 37 410 7 344 1.48e-84 262
MsG0280009794.01.T01 AT1G78430 48.158 380 131 11 35 410 7 324 2.14e-81 253
MsG0280009794.01.T01 AT5G60210 27.523 327 179 11 96 406 301 585 3.92e-14 74.7
MsG0280009794.01.T01 AT5G60210 27.523 327 179 11 96 406 301 585 3.92e-14 74.7
MsG0280009794.01.T01 AT5G60210 27.523 327 179 11 96 406 277 561 9.19e-14 73.6
MsG0280009794.01.T01 AT5G60210 27.523 327 179 11 96 406 277 561 9.19e-14 73.6
MsG0280009794.01.T01 AT5G60210 27.523 327 179 11 96 406 277 561 9.19e-14 73.6
MsG0280009794.01.T01 AT5G60210 27.523 327 179 11 96 406 277 561 9.19e-14 73.6
MsG0280009794.01.T01 AT3G53350 25.000 372 187 9 38 334 23 377 8.56e-12 67.0
MsG0280009794.01.T01 AT3G53350 25.000 372 187 9 38 334 12 366 2.06e-11 65.5
MsG0280009794.01.T01 AT3G53350 25.000 372 187 9 38 334 12 366 2.06e-11 65.5
MsG0280009794.01.T01 AT3G53350 25.000 372 189 9 38 334 23 379 7.62e-11 63.9
MsG0280009794.01.T01 AT3G53350 25.000 372 189 9 38 334 23 379 7.62e-11 63.9

Find 98 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAATGTTTGGTGATTTA+TGG 0.158925 2:+58179532 MsG0280009794.01.T01:CDS
TCCATTGAACCACACCTTTC+AGG 0.188017 2:-58179381 None:intergenic
GGTGGGCCTAATGCAATTTA+TGG 0.206450 2:+58177177 MsG0280009794.01.T01:CDS
GCTGCAGCTGCAGTGCTTGC+AGG 0.211780 2:+58179327 MsG0280009794.01.T01:CDS
CGGGACTCGCATTGCAGATT+TGG 0.237903 2:+58178624 MsG0280009794.01.T01:CDS
TTGTTTCTGTTGTATTATAA+TGG 0.269451 2:+58179804 MsG0280009794.01.T01:three_prime_UTR
ACATAATAGTACACTCTTAA+TGG 0.283825 2:-58179827 None:intergenic
CCTTTCAAGTTGTTGCATAA+TGG 0.290766 2:-58177152 None:intergenic
GAAGAAATTGAGTAAAGAAT+TGG 0.311524 2:+58179176 MsG0280009794.01.T01:CDS
ATTCATTCAGTTGATTCTTC+AGG 0.316287 2:-58179098 None:intergenic
TCTTCTGGTATTAGAATGTT+TGG 0.317878 2:+58179522 MsG0280009794.01.T01:CDS
GATGATCTGGATGATGGTTT+TGG 0.318666 2:+58179480 MsG0280009794.01.T01:CDS
GATCGTCGGTCTCCTAGTTT+TGG 0.320194 2:-58178556 None:intergenic
TCCTGGTATGGTTGATGATC+TGG 0.327726 2:+58179467 MsG0280009794.01.T01:CDS
CAACTTCTCATTCAACTTCT+CGG 0.328807 2:-58179217 None:intergenic
TTCTCTGGCTCTGATGTTGC+TGG 0.333734 2:-58178967 None:intergenic
CAGTAAATATGTTTCCCTAT+TGG 0.344572 2:+58177110 MsG0280009794.01.T01:CDS
TTTGGACTTCGTTCAGTAAC+CGG 0.349435 2:-58178538 None:intergenic
ACTTGAATTGACAGCGAGTT+TGG 0.350933 2:+58179587 MsG0280009794.01.T01:three_prime_UTR
AGCGTCGTTGAAATCAAGTT+TGG 0.357678 2:+58179029 MsG0280009794.01.T01:CDS
GTGGGTGCAGAAATCACTTT+TGG 0.358030 2:-58179566 None:intergenic
GATGTTGCTGGTTGAGTTTG+AGG 0.385163 2:-58178955 None:intergenic
TCCTCCACAAAAGGCTTCTC+TGG 0.388495 2:-58178982 None:intergenic
TACACATGTACAATTCCAAT+AGG 0.404503 2:-58177125 None:intergenic
CCCTTCACCTCAGTTGGAAA+AGG 0.423532 2:-58179917 None:intergenic
AAGAATTGGAAGCTAGTAAA+GGG 0.424711 2:+58179190 MsG0280009794.01.T01:CDS
GAAATCTGTGGAAGAAGAAA+AGG 0.430192 2:+58179239 MsG0280009794.01.T01:CDS
TGAAGTTCCTATCGAAAAGT+TGG 0.430569 2:+58178894 MsG0280009794.01.T01:CDS
ACTTTCCCATAAATTGCATT+AGG 0.434195 2:-58177183 None:intergenic
TTCTGTCAAAAGTAATACTT+TGG 0.435261 2:+58179629 MsG0280009794.01.T01:three_prime_UTR
TCCTGAAAGGTGTGGTTCAA+TGG 0.435919 2:+58179380 MsG0280009794.01.T01:CDS
TTGATATGAGTGCTGCTGCT+AGG 0.438889 2:+58179355 MsG0280009794.01.T01:CDS
GCAGCTGCAGTGCTTGCAGG+AGG 0.450210 2:+58179330 MsG0280009794.01.T01:CDS
ATAGTTAAAATACTACTCAT+TGG 0.456410 2:-58179701 None:intergenic
AAAGAATTGGAAGCTAGTAA+AGG 0.459045 2:+58179189 MsG0280009794.01.T01:CDS
CCTTCACCTCAGTTGGAAAA+GGG 0.459069 2:-58179916 None:intergenic
GGTGATTTATGGAAGAAGAA+AGG 0.459584 2:+58179543 MsG0280009794.01.T01:CDS
GTGGGCCTAATGCAATTTAT+GGG 0.462200 2:+58177178 MsG0280009794.01.T01:CDS
CATGGATATGTAGGTTCTCC+TGG 0.462446 2:+58179450 MsG0280009794.01.T01:CDS
TAAGAACCCTTCACCTCAGT+TGG 0.468013 2:-58179923 None:intergenic
AGTGTCAGCTCCTCCACAAA+AGG 0.476304 2:-58178991 None:intergenic
AATCAGAAATGAAGAAGCTA+AGG 0.488261 2:+58179271 MsG0280009794.01.T01:CDS
AAAACATGATGTATTTGAAA+AGG 0.489311 2:+58178930 MsG0280009794.01.T01:CDS
TGATATGAGTGCTGCTGCTA+GGG 0.490148 2:+58179356 MsG0280009794.01.T01:CDS
ACACCTGGTGGAAGGTATCA+TGG 0.495632 2:+58179432 MsG0280009794.01.T01:CDS
ATGGATAAGCACTTTGGCGG+TGG 0.498541 2:+58179399 MsG0280009794.01.T01:CDS
TCGGATTGAGTACCACCTCT+TGG 0.503758 2:-58178580 None:intergenic
CTTCTTCTGATTTACTGTCT+CGG 0.503831 2:-58178599 None:intergenic
ACACATGTACAATTCCAATA+GGG 0.513566 2:-58177124 None:intergenic
ATGGTTGATGATCTGGATGA+TGG 0.513817 2:+58179474 MsG0280009794.01.T01:CDS
GGAAGGTATCATGGATATGT+AGG 0.515502 2:+58179441 MsG0280009794.01.T01:CDS
AGTAAAAGCTGCTGAAACAA+AGG 0.517289 2:+58179131 MsG0280009794.01.T01:CDS
GTCGTTGAAATCAAGTTTGG+AGG 0.523652 2:+58179032 MsG0280009794.01.T01:CDS
ATATGTAGGTTCTCCTGGTA+TGG 0.532614 2:+58179455 MsG0280009794.01.T01:CDS
CAGTAAATCAGAAGAAGCTC+GGG 0.538053 2:+58178605 MsG0280009794.01.T01:CDS
GCAGATTTGGAATCACAGCT+TGG 0.551467 2:+58178637 MsG0280009794.01.T01:CDS
GCTGCTGAAACAAAGGAAGA+AGG 0.552537 2:+58179138 MsG0280009794.01.T01:CDS
ACAGTAAATCAGAAGAAGCT+CGG 0.553824 2:+58178604 MsG0280009794.01.T01:CDS
CAAGAGGTACTCATCAGCTT+CGG 0.558421 2:+58178476 MsG0280009794.01.T01:CDS
TCAATGGATAAGCACTTTGG+CGG 0.562568 2:+58179396 MsG0280009794.01.T01:CDS
TCCATCACATCATCATCGAC+CGG 0.578161 2:+58178519 MsG0280009794.01.T01:CDS
AAACTCGCTGTCAATTCAAG+TGG 0.583507 2:-58179585 None:intergenic
TATGCAACAACTTGAAAGGA+TGG 0.584584 2:+58177156 MsG0280009794.01.T01:CDS
CCATTATGCAACAACTTGAA+AGG 0.584706 2:+58177152 MsG0280009794.01.T01:CDS
GGTTCAATGGATAAGCACTT+TGG 0.584940 2:+58179393 MsG0280009794.01.T01:CDS
CTTCACCTCAGTTGGAAAAG+GGG 0.585048 2:-58179915 None:intergenic
CGAAGCTGATGAGTACCTCT+TGG 0.586620 2:-58178475 None:intergenic
CCTCTTGGTGACTGCCTCTG+AGG 0.586987 2:-58178460 None:intergenic
AAAGGAAGAAGGAATGACAA+TGG 0.591938 2:+58179149 MsG0280009794.01.T01:CDS
CAACAACTTGAAAGGATGGT+GGG 0.595837 2:+58177160 MsG0280009794.01.T01:CDS
CAGCGAGTTTGGCAGAATCA+CGG 0.596366 2:+58179598 MsG0280009794.01.T01:three_prime_UTR
TCCAGATCATCAACCATACC+AGG 0.598846 2:-58179468 None:intergenic
CTGCTGCTAGGGTTCCTGAA+AGG 0.600125 2:+58179367 MsG0280009794.01.T01:CDS
ACTGAACGAAGTCCAAAACT+AGG 0.607274 2:+58178544 MsG0280009794.01.T01:CDS
ACGTTGACGTGAATTTGTTG+AGG 0.607558 2:-58179654 None:intergenic
CTGTGGAAGAAGAAAAGGCA+GGG 0.608960 2:+58179244 MsG0280009794.01.T01:CDS
TAACTATGGCCATGTTTAGG+TGG 0.611223 2:+58179717 MsG0280009794.01.T01:three_prime_UTR
ACCGGTCGATGATGATGTGA+TGG 0.611787 2:-58178520 None:intergenic
AACTCGCTGTCAATTCAAGT+GGG 0.613913 2:-58179584 None:intergenic
GCAACAACTTGAAAGGATGG+TGG 0.616900 2:+58177159 MsG0280009794.01.T01:CDS
TACCACCTCTTGGAGATCGT+CGG 0.618257 2:-58178570 None:intergenic
ATCAGAAATGAAGAAGCTAA+GGG 0.620572 2:+58179272 MsG0280009794.01.T01:CDS
CATTTGAGACACCTGGTGGA+AGG 0.626032 2:+58179424 MsG0280009794.01.T01:CDS
AGCTCAATCAGTAGTTCCTG+TGG 0.631311 2:+58178750 MsG0280009794.01.T01:CDS
TCTGTGGAAGAAGAAAAGGC+AGG 0.632238 2:+58179243 MsG0280009794.01.T01:CDS
GGGGAACTGATTTGCCTCAG+AGG 0.632430 2:+58178446 MsG0280009794.01.T01:intron
CTTCTGCTACCACCTAAACA+TGG 0.642613 2:-58179726 None:intergenic
GCTAGGGTTCCTGAAAGGTG+TGG 0.647120 2:+58179372 MsG0280009794.01.T01:CDS
GACCGACGATCTCCAAGAGG+TGG 0.659823 2:+58178568 MsG0280009794.01.T01:CDS
ATGATGTGATGGATCTGAGT+CGG 0.663820 2:-58178509 None:intergenic
GGTGGAACATTTGAGACACC+TGG 0.665184 2:+58179417 MsG0280009794.01.T01:CDS
TATCCATGATACCTTCCACC+AGG 0.668548 2:-58179435 None:intergenic
GAATGAGAAGTTGAAATCTG+TGG 0.677488 2:+58179227 MsG0280009794.01.T01:CDS
CCTCAGAGGCAGTCACCAAG+AGG 0.691940 2:+58178460 MsG0280009794.01.T01:CDS
TAAGGGTGCAGACAGAACAA+TGG 0.700140 2:+58179289 MsG0280009794.01.T01:CDS
GGAACATTTGAGACACCTGG+TGG 0.711032 2:+58179420 MsG0280009794.01.T01:CDS
GGAGACCGACGATCTCCAAG+AGG 0.717137 2:+58178565 MsG0280009794.01.T01:CDS
ATAGGGAAACATATTTACTG+CGG 0.741435 2:-58177107 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTACATTTTAAAAGA+AGG - Chr2:58178211-58178230 None:intergenic 10.0%
!! TGATATAAAAAACAAAATCA+TGG + Chr2:58178323-58178342 MsG0280009794.01.T01:intron 15.0%
!!! ATTAATTGTTGTTTTCAAAT+AGG + Chr2:58178425-58178444 MsG0280009794.01.T01:intron 15.0%
!!! CTATTTTTCTTTAAAGAAAA+TGG - Chr2:58177938-58177957 None:intergenic 15.0%
!!! TGTTTTTTATATCAAAATCA+GGG - Chr2:58178317-58178336 None:intergenic 15.0%
!!! TTAATTGTTGTTTTCAAATA+GGG + Chr2:58178426-58178445 MsG0280009794.01.T01:intron 15.0%
!!! TTGTTTTTTATATCAAAATC+AGG - Chr2:58178318-58178337 None:intergenic 15.0%
!! AAAACATGATGTATTTGAAA+AGG + Chr2:58178930-58178949 MsG0280009794.01.T01:CDS 20.0%
!! ATAGTTAAAATACTACTCAT+TGG - Chr2:58179704-58179723 None:intergenic 20.0%
!! TGAAATCATGTAAAATTGTT+GGG + Chr2:58177314-58177333 MsG0280009794.01.T01:intron 20.0%
!! TGAATATCTATGTGTATTTA+TGG - Chr2:58177846-58177865 None:intergenic 20.0%
!! TTGAAATCATGTAAAATTGT+TGG + Chr2:58177313-58177332 MsG0280009794.01.T01:intron 20.0%
!!! AAATTCCTTTTTCTTTTCTT+GGG + Chr2:58177256-58177275 MsG0280009794.01.T01:intron 20.0%
!!! AATGAGTAGTATTTTAACTA+TGG + Chr2:58179703-58179722 MsG0280009794.01.T01:three_prime_UTR 20.0%
!!! AATTGACATTAACTTGAAAA+GGG + Chr2:58177911-58177930 MsG0280009794.01.T01:intron 20.0%
!!! TAAATTCCTTTTTCTTTTCT+TGG + Chr2:58177255-58177274 MsG0280009794.01.T01:intron 20.0%
!!! TAATTGACATTAACTTGAAA+AGG + Chr2:58177910-58177929 MsG0280009794.01.T01:intron 20.0%
!!! TAATTGTTGTTTTCAAATAG+GGG + Chr2:58178427-58178446 MsG0280009794.01.T01:intron 20.0%
!!! TTGTTTCTGTTGTATTATAA+TGG + Chr2:58179804-58179823 MsG0280009794.01.T01:three_prime_UTR 20.0%
! AACATTATACTACCAACAAT+TGG - Chr2:58177452-58177471 None:intergenic 25.0%
! ACAGCGTTTAAAAAAAATCA+CGG - Chr2:58178384-58178403 None:intergenic 25.0%
! ACATAATAGTACACTCTTAA+TGG - Chr2:58179830-58179849 None:intergenic 25.0%
! ACATTATACTACCAACAATT+GGG - Chr2:58177451-58177470 None:intergenic 25.0%
! ATGTGACTAATAAACTAGAA+AGG - Chr2:58177778-58177797 None:intergenic 25.0%
! ATTAATACAGCTTAAACGTT+TGG - Chr2:58178411-58178430 None:intergenic 25.0%
! GAAGAAATTGAGTAAAGAAT+TGG + Chr2:58179176-58179195 MsG0280009794.01.T01:CDS 25.0%
! GTCAATTAAGCTCTTAAATT+AGG - Chr2:58177898-58177917 None:intergenic 25.0%
! TTCTGTCAAAAGTAATACTT+TGG + Chr2:58179629-58179648 MsG0280009794.01.T01:three_prime_UTR 25.0%
! TTTAAAAAAAATCACGGTCT+CGG - Chr2:58178378-58178397 None:intergenic 25.0%
!! AATTCCTTTTTCTTTTCTTG+GGG + Chr2:58177257-58177276 MsG0280009794.01.T01:intron 25.0%
!! CTTTCTTGATTTTTCCAAAA+GGG + Chr2:58177687-58177706 MsG0280009794.01.T01:intron 25.0%
!! GATAATTCTTTGATTTCTTG+AGG + Chr2:58177740-58177759 MsG0280009794.01.T01:intron 25.0%
!! TCTTTCTTGATTTTTCCAAA+AGG + Chr2:58177686-58177705 MsG0280009794.01.T01:intron 25.0%
!! TTAGAATGTTTGGTGATTTA+TGG + Chr2:58179532-58179551 MsG0280009794.01.T01:CDS 25.0%
!! TTTTATTGCATGTCATTGTT+TGG + Chr2:58177606-58177625 MsG0280009794.01.T01:intron 25.0%
!!! AACATCTTGATGTTTTGTTT+CGG - Chr2:58178836-58178855 None:intergenic 25.0%
!!! AATACCTTTCTAGTTTCTAA+TGG + Chr2:58177715-58177734 MsG0280009794.01.T01:intron 25.0%
!!! ATTTTTTTGTTACCTTTAGC+AGG + Chr2:58178054-58178073 MsG0280009794.01.T01:intron 25.0%
!!! TGATATGAACTTTTGAAAGA+TGG + Chr2:58179877-58179896 MsG0280009794.01.T01:three_prime_UTR 25.0%
AAAGAATTGGAAGCTAGTAA+AGG + Chr2:58179189-58179208 MsG0280009794.01.T01:CDS 30.0%
AAGAATTGGAAGCTAGTAAA+GGG + Chr2:58179190-58179209 MsG0280009794.01.T01:CDS 30.0%
AAGTTTGGAGGAAAAAAAGA+AGG + Chr2:58179044-58179063 MsG0280009794.01.T01:CDS 30.0%
AATCAGAAATGAAGAAGCTA+AGG + Chr2:58179271-58179290 MsG0280009794.01.T01:CDS 30.0%
AATTAGGTGTAACAGATAGA+AGG - Chr2:58177882-58177901 None:intergenic 30.0%
ACACATGTACAATTCCAATA+GGG - Chr2:58177127-58177146 None:intergenic 30.0%
ACTTTCCCATAAATTGCATT+AGG - Chr2:58177186-58177205 None:intergenic 30.0%
AGTTATATGCTAGCATTATC+AGG + Chr2:58177209-58177228 MsG0280009794.01.T01:intron 30.0%
ATAGGGAAACATATTTACTG+CGG - Chr2:58177110-58177129 None:intergenic 30.0%
ATCAGAAATGAAGAAGCTAA+GGG + Chr2:58179272-58179291 MsG0280009794.01.T01:CDS 30.0%
CAGTAAATATGTTTCCCTAT+TGG + Chr2:58177110-58177129 MsG0280009794.01.T01:CDS 30.0%
GTATAACATGATTAGTAGCA+AGG - Chr2:58178240-58178259 None:intergenic 30.0%
GTGATAGAACAACAATTCTA+AGG - Chr2:58178110-58178129 None:intergenic 30.0%
TAACATACATACCTTGATCT+TGG - Chr2:58178158-58178177 None:intergenic 30.0%
TACACATGTACAATTCCAAT+AGG - Chr2:58177128-58177147 None:intergenic 30.0%
TCTTCCATTAGAAACTAGAA+AGG - Chr2:58177722-58177741 None:intergenic 30.0%
TCTTCTGGTATTAGAATGTT+TGG + Chr2:58179522-58179541 MsG0280009794.01.T01:CDS 30.0%
! ATTCATTCAGTTGATTCTTC+AGG - Chr2:58179101-58179120 None:intergenic 30.0%
! TTTTGATAGACTGTGAGTTT+AGG + Chr2:58178273-58178292 MsG0280009794.01.T01:intron 30.0%
!! TTTGGTAGTGGAAAAAAGAA+GGG + Chr2:58179498-58179517 MsG0280009794.01.T01:CDS 30.0%
!! TTTTAACTATGGCCATGTTT+AGG + Chr2:58179714-58179733 MsG0280009794.01.T01:three_prime_UTR 30.0%
!!! TTTTGGTAGTGGAAAAAAGA+AGG + Chr2:58179497-58179516 MsG0280009794.01.T01:CDS 30.0%
AAAGGAAGAAGGAATGACAA+TGG + Chr2:58179149-58179168 MsG0280009794.01.T01:CDS 35.0%
AAGATTGGACGATTCATATG+GGG - Chr2:58177376-58177395 None:intergenic 35.0%
ACAACTCATATCCCAATTGT+TGG + Chr2:58177437-58177456 MsG0280009794.01.T01:intron 35.0%
ACAGTAAATCAGAAGAAGCT+CGG + Chr2:58178604-58178623 MsG0280009794.01.T01:CDS 35.0%
AGCTGAAAAGAAAAAAGCTG+AGG + Chr2:58178711-58178730 MsG0280009794.01.T01:CDS 35.0%
AGTAAAAGCTGCTGAAACAA+AGG + Chr2:58179131-58179150 MsG0280009794.01.T01:CDS 35.0%
CAACTTCTCATTCAACTTCT+CGG - Chr2:58179220-58179239 None:intergenic 35.0%
CAAGATTGGACGATTCATAT+GGG - Chr2:58177377-58177396 None:intergenic 35.0%
CATATCAAATGCCAAGATCA+AGG + Chr2:58178144-58178163 MsG0280009794.01.T01:intron 35.0%
CCATTATGCAACAACTTGAA+AGG + Chr2:58177152-58177171 MsG0280009794.01.T01:CDS 35.0%
CTTCTTCTGATTTACTGTCT+CGG - Chr2:58178602-58178621 None:intergenic 35.0%
GAAATCTGTGGAAGAAGAAA+AGG + Chr2:58179239-58179258 MsG0280009794.01.T01:CDS 35.0%
GAATGAGAAGTTGAAATCTG+TGG + Chr2:58179227-58179246 MsG0280009794.01.T01:CDS 35.0%
GGTGATTTATGGAAGAAGAA+AGG + Chr2:58179543-58179562 MsG0280009794.01.T01:CDS 35.0%
TAGTCACATTTGTAGTGAGT+TGG + Chr2:58177789-58177808 MsG0280009794.01.T01:intron 35.0%
TATGCAACAACTTGAAAGGA+TGG + Chr2:58177156-58177175 MsG0280009794.01.T01:CDS 35.0%
TCAAGATTGGACGATTCATA+TGG - Chr2:58177378-58177397 None:intergenic 35.0%
TGAAGTTCCTATCGAAAAGT+TGG + Chr2:58178894-58178913 MsG0280009794.01.T01:CDS 35.0%
! GCTTCTTTATGATAGTGTGT+TGG + Chr2:58177811-58177830 MsG0280009794.01.T01:intron 35.0%
! GTCTCTTCTTGATTTTCATC+AGG - Chr2:58178865-58178884 None:intergenic 35.0%
! TCAATTGCCAACTTTTCGAT+AGG - Chr2:58178904-58178923 None:intergenic 35.0%
! TCTTGAAACTTTTCTACCAC+AGG - Chr2:58178769-58178788 None:intergenic 35.0%
! TTGTTGTGCATGCTTCTTTT+TGG + Chr2:58179769-58179788 MsG0280009794.01.T01:three_prime_UTR 35.0%
! TTTTTGTTACCTTTAGCAGG+TGG + Chr2:58178057-58178076 MsG0280009794.01.T01:intron 35.0%
!! CCTTTCAAGTTGTTGCATAA+TGG - Chr2:58177155-58177174 None:intergenic 35.0%
!!! AAAGGTATTGATGACCCTTT+TGG - Chr2:58177704-58177723 None:intergenic 35.0%
AAACTCGCTGTCAATTCAAG+TGG - Chr2:58179588-58179607 None:intergenic 40.0%
AACACAGGACTAATGTGATG+TGG + Chr2:58177629-58177648 MsG0280009794.01.T01:intron 40.0%
AACGACACATATGTGGTTAC+GGG + Chr2:58177401-58177420 MsG0280009794.01.T01:intron 40.0%
AACTCGCTGTCAATTCAAGT+GGG - Chr2:58179587-58179606 None:intergenic 40.0%
ACACAGGACTAATGTGATGT+GGG + Chr2:58177630-58177649 MsG0280009794.01.T01:intron 40.0%
ACTGAACGAAGTCCAAAACT+AGG + Chr2:58178544-58178563 MsG0280009794.01.T01:CDS 40.0%
ACTTGAATTGACAGCGAGTT+TGG + Chr2:58179587-58179606 MsG0280009794.01.T01:three_prime_UTR 40.0%
AGCACCCCAAGAAAAGAAAA+AGG - Chr2:58177264-58177283 None:intergenic 40.0%
AGCGTCGTTGAAATCAAGTT+TGG + Chr2:58179029-58179048 MsG0280009794.01.T01:CDS 40.0%
ATATGTAGGTTCTCCTGGTA+TGG + Chr2:58179455-58179474 MsG0280009794.01.T01:CDS 40.0%
CAACAACTTGAAAGGATGGT+GGG + Chr2:58177160-58177179 MsG0280009794.01.T01:CDS 40.0%
CAACGACACATATGTGGTTA+CGG + Chr2:58177400-58177419 MsG0280009794.01.T01:intron 40.0%
CAGTAAATCAGAAGAAGCTC+GGG + Chr2:58178605-58178624 MsG0280009794.01.T01:CDS 40.0%
GGAAAAAAGAAGGGTTCTTC+TGG + Chr2:58179507-58179526 MsG0280009794.01.T01:CDS 40.0%
GGAGGAAAAAAAGAAGGAAC+TGG + Chr2:58179050-58179069 MsG0280009794.01.T01:CDS 40.0%
GGTTCAATGGATAAGCACTT+TGG + Chr2:58179393-58179412 MsG0280009794.01.T01:CDS 40.0%
GTCGTTGAAATCAAGTTTGG+AGG + Chr2:58179032-58179051 MsG0280009794.01.T01:CDS 40.0%
GTGGGCCTAATGCAATTTAT+GGG + Chr2:58177178-58177197 MsG0280009794.01.T01:CDS 40.0%
TAACTATGGCCATGTTTAGG+TGG + Chr2:58179717-58179736 MsG0280009794.01.T01:three_prime_UTR 40.0%
TCAATGGATAAGCACTTTGG+CGG + Chr2:58179396-58179415 MsG0280009794.01.T01:CDS 40.0%
TTGATCCAACGACACATATG+TGG + Chr2:58177394-58177413 MsG0280009794.01.T01:intron 40.0%
TTTGGACTTCGTTCAGTAAC+CGG - Chr2:58178541-58178560 None:intergenic 40.0%
! AAAAGCATGCACAATGTCAG+AGG - Chr2:58177558-58177577 None:intergenic 40.0%
! ATCAGGTTGCACATTTGCAT+AGG + Chr2:58177226-58177245 MsG0280009794.01.T01:intron 40.0%
! ATGTGTCGTTGGATCAAGAT+TGG - Chr2:58177391-58177410 None:intergenic 40.0%
! ATTTTCCCCTTTTCCAACTG+AGG + Chr2:58179910-58179929 MsG0280009794.01.T01:three_prime_UTR 40.0%
! CATGTCATTGTTTGGAACAC+AGG + Chr2:58177614-58177633 MsG0280009794.01.T01:intron 40.0%
! TCAGGTTGCACATTTGCATA+GGG + Chr2:58177227-58177246 MsG0280009794.01.T01:intron 40.0%
!! ACGTTGACGTGAATTTGTTG+AGG - Chr2:58179657-58179676 None:intergenic 40.0%
!! ATGATAGTGTGTTGGCTCAA+AGG + Chr2:58177819-58177838 MsG0280009794.01.T01:intron 40.0%
!! ATGATGTGATGGATCTGAGT+CGG - Chr2:58178512-58178531 None:intergenic 40.0%
!! ATGGTTGATGATCTGGATGA+TGG + Chr2:58179474-58179493 MsG0280009794.01.T01:CDS 40.0%
!! GATGATCTGGATGATGGTTT+TGG + Chr2:58179480-58179499 MsG0280009794.01.T01:CDS 40.0%
!! GGAAGGTATCATGGATATGT+AGG + Chr2:58179441-58179460 MsG0280009794.01.T01:CDS 40.0%
!! TGATAGTGTGTTGGCTCAAA+GGG + Chr2:58177820-58177839 MsG0280009794.01.T01:intron 40.0%
!! TTTTCTTTTCTTGGGGTGCT+AGG + Chr2:58177264-58177283 MsG0280009794.01.T01:intron 40.0%
AATCTCACTCCACCTGCTAA+AGG - Chr2:58178069-58178088 None:intergenic 45.0%
AGCTCAATCAGTAGTTCCTG+TGG + Chr2:58178750-58178769 MsG0280009794.01.T01:CDS 45.0%
CACAGGACTAATGTGATGTG+GGG + Chr2:58177631-58177650 MsG0280009794.01.T01:intron 45.0%
CATGGATATGTAGGTTCTCC+TGG + Chr2:58179450-58179469 MsG0280009794.01.T01:CDS 45.0%
CCTTCACCTCAGTTGGAAAA+GGG - Chr2:58179919-58179938 None:intergenic 45.0%
CGTAACCACATATGTGTCGT+TGG - Chr2:58177402-58177421 None:intergenic 45.0%
CTGTGGAAGAAGAAAAGGCA+GGG + Chr2:58179244-58179263 MsG0280009794.01.T01:CDS 45.0%
CTTCACCTCAGTTGGAAAAG+GGG - Chr2:58179918-58179937 None:intergenic 45.0%
CTTCTGCTACCACCTAAACA+TGG - Chr2:58179729-58179748 None:intergenic 45.0%
GCAACAACTTGAAAGGATGG+TGG + Chr2:58177159-58177178 MsG0280009794.01.T01:CDS 45.0%
GCTGCTGAAACAAAGGAAGA+AGG + Chr2:58179138-58179157 MsG0280009794.01.T01:CDS 45.0%
GGTGGGCCTAATGCAATTTA+TGG + Chr2:58177177-58177196 MsG0280009794.01.T01:CDS 45.0%
TAAGAACCCTTCACCTCAGT+TGG - Chr2:58179926-58179945 None:intergenic 45.0%
TATCCATGATACCTTCCACC+AGG - Chr2:58179438-58179457 None:intergenic 45.0%
TCCAGATCATCAACCATACC+AGG - Chr2:58179471-58179490 None:intergenic 45.0%
TCCATCACATCATCATCGAC+CGG + Chr2:58178519-58178538 MsG0280009794.01.T01:CDS 45.0%
TCCATTGAACCACACCTTTC+AGG - Chr2:58179384-58179403 None:intergenic 45.0%
TCTGTGGAAGAAGAAAAGGC+AGG + Chr2:58179243-58179262 MsG0280009794.01.T01:CDS 45.0%
TGTGAGTTTAGGCAGAATCG+CGG + Chr2:58178284-58178303 MsG0280009794.01.T01:intron 45.0%
! CCTTTTCCAACTGAGGTGAA+GGG + Chr2:58179917-58179936 MsG0280009794.01.T01:three_prime_UTR 45.0%
! GATGTTGCTGGTTGAGTTTG+AGG - Chr2:58178958-58178977 None:intergenic 45.0%
! GCAGATTTGGAATCACAGCT+TGG + Chr2:58178637-58178656 MsG0280009794.01.T01:CDS 45.0%
! GTGCATGCTTTTGCTCTTGA+GGG + Chr2:58177566-58177585 MsG0280009794.01.T01:intron 45.0%
! GTGGGTGCAGAAATCACTTT+TGG - Chr2:58179569-58179588 None:intergenic 45.0%
! TAAGGGTGCAGACAGAACAA+TGG + Chr2:58179289-58179308 MsG0280009794.01.T01:CDS 45.0%
! TCACGGTCTCGGATTTTGTT+AGG - Chr2:58178367-58178386 None:intergenic 45.0%
! TCCTGAAAGGTGTGGTTCAA+TGG + Chr2:58179380-58179399 MsG0280009794.01.T01:CDS 45.0%
! TGATATGAGTGCTGCTGCTA+GGG + Chr2:58179356-58179375 MsG0280009794.01.T01:CDS 45.0%
! TGTGCATGCTTTTGCTCTTG+AGG + Chr2:58177565-58177584 MsG0280009794.01.T01:intron 45.0%
! TTGATATGAGTGCTGCTGCT+AGG + Chr2:58179355-58179374 MsG0280009794.01.T01:CDS 45.0%
!! CAAGAGGTACTCATCAGCTT+CGG + Chr2:58178476-58178495 MsG0280009794.01.T01:CDS 45.0%
!! TCCTGGTATGGTTGATGATC+TGG + Chr2:58179467-58179486 MsG0280009794.01.T01:CDS 45.0%
!!! CTGGATGATGGTTTTGGTAG+TGG + Chr2:58179486-58179505 MsG0280009794.01.T01:CDS 45.0%
AGTGTCAGCTCCTCCACAAA+AGG - Chr2:58178994-58179013 None:intergenic 50.0%
ATGGATAAGCACTTTGGCGG+TGG + Chr2:58179399-58179418 MsG0280009794.01.T01:CDS 50.0%
CAGCGAGTTTGGCAGAATCA+CGG + Chr2:58179598-58179617 MsG0280009794.01.T01:three_prime_UTR 50.0%
CCCTTCACCTCAGTTGGAAA+AGG - Chr2:58179920-58179939 None:intergenic 50.0%
CGAAGCTGATGAGTACCTCT+TGG - Chr2:58178478-58178497 None:intergenic 50.0%
TACCACCTCTTGGAGATCGT+CGG - Chr2:58178573-58178592 None:intergenic 50.0%
TCCTCCACAAAAGGCTTCTC+TGG - Chr2:58178985-58179004 None:intergenic 50.0%
TCGGATTGAGTACCACCTCT+TGG - Chr2:58178583-58178602 None:intergenic 50.0%
! ACCGGTCGATGATGATGTGA+TGG - Chr2:58178523-58178542 None:intergenic 50.0%
! AGAGCCAGAGAAGCCTTTTG+TGG + Chr2:58178978-58178997 MsG0280009794.01.T01:CDS 50.0%
! CATGCTTTTGCTCTTGAGGG+TGG + Chr2:58177569-58177588 MsG0280009794.01.T01:intron 50.0%
! CATTTGAGACACCTGGTGGA+AGG + Chr2:58179424-58179443 MsG0280009794.01.T01:CDS 50.0%
! CCCTTTTCCAACTGAGGTGA+AGG + Chr2:58179916-58179935 MsG0280009794.01.T01:three_prime_UTR 50.0%
! GATCGTCGGTCTCCTAGTTT+TGG - Chr2:58178559-58178578 None:intergenic 50.0%
! GGAACATTTGAGACACCTGG+TGG + Chr2:58179420-58179439 MsG0280009794.01.T01:CDS 50.0%
! GGTGGAACATTTGAGACACC+TGG + Chr2:58179417-58179436 MsG0280009794.01.T01:CDS 50.0%
!! ACACCTGGTGGAAGGTATCA+TGG + Chr2:58179432-58179451 MsG0280009794.01.T01:CDS 50.0%
!! TTCTCTGGCTCTGATGTTGC+TGG - Chr2:58178970-58178989 None:intergenic 50.0%
CGGGACTCGCATTGCAGATT+TGG + Chr2:58178624-58178643 MsG0280009794.01.T01:CDS 55.0%
CTGCTGCTAGGGTTCCTGAA+AGG + Chr2:58179367-58179386 MsG0280009794.01.T01:CDS 55.0%
GCTAGGGTTCCTGAAAGGTG+TGG + Chr2:58179372-58179391 MsG0280009794.01.T01:CDS 55.0%
! GCCAGAGAAGCCTTTTGTGG+AGG + Chr2:58178981-58179000 MsG0280009794.01.T01:CDS 55.0%
!! GGGGAACTGATTTGCCTCAG+AGG + Chr2:58178446-58178465 MsG0280009794.01.T01:intron 55.0%
CCTCAGAGGCAGTCACCAAG+AGG + Chr2:58178460-58178479 MsG0280009794.01.T01:CDS 60.0%
GACCGACGATCTCCAAGAGG+TGG + Chr2:58178568-58178587 MsG0280009794.01.T01:CDS 60.0%
GGAGACCGACGATCTCCAAG+AGG + Chr2:58178565-58178584 MsG0280009794.01.T01:CDS 60.0%
! CCTCTTGGTGACTGCCTCTG+AGG - Chr2:58178463-58178482 None:intergenic 60.0%
GCAGCTGCAGTGCTTGCAGG+AGG + Chr2:58179330-58179349 MsG0280009794.01.T01:CDS 65.0%
GCTGCAGCTGCAGTGCTTGC+AGG + Chr2:58179327-58179346 MsG0280009794.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 58177100 58179959 58177100 ID=MsG0280009794.01;Name=MsG0280009794.01
Chr2 mRNA 58177100 58179959 58177100 ID=MsG0280009794.01.T01;Parent=MsG0280009794.01;Name=MsG0280009794.01.T01;_AED=0.37;_eAED=0.41;_QI=0|0|0.5|1|1|1|2|384|410
Chr2 exon 58177100 58177203 58177100 ID=MsG0280009794.01.T01:exon:38404;Parent=MsG0280009794.01.T01
Chr2 exon 58178447 58179959 58178447 ID=MsG0280009794.01.T01:exon:38405;Parent=MsG0280009794.01.T01
Chr2 CDS 58177100 58177203 58177100 ID=MsG0280009794.01.T01:cds;Parent=MsG0280009794.01.T01
Chr2 CDS 58178447 58179575 58178447 ID=MsG0280009794.01.T01:cds;Parent=MsG0280009794.01.T01
Chr2 three_prime_UTR 58179576 58179959 58179576 ID=MsG0280009794.01.T01:three_prime_utr;Parent=MsG0280009794.01.T01
Gene Sequence

>MsG0280009794.01.T01

ATGTTCACCGCAGTAAATATGTTTCCCTATTGGAATTGTACATGTGTACAGTCCATTATGCAACAACTTGAAAGGATGGTGGGCCTAATGCAATTTATGGGAAAGGGAACTGATTTGCCTCAGAGGCAGTCACCAAGAGGTACTCATCAGCTTCGGACATCGAGTTCCGACTCAGATCCATCACATCATCATCGACCGGTTACTGAACGAAGTCCAAAACTAGGAGACCGACGATCTCCAAGAGGTGGTACTCAATCCGAGACAGTAAATCAGAAGAAGCTCGGGACTCGCATTGCAGATTTGGAATCACAGCTTGGTCAAGCACAACAAGAGTTGAAAAATTTGAAAAATCAACTATCTTCTGCAGAAGCTGAAAAGAAAAAAGCTGAGGATGAACTAGTGAAGAAAGCTCAATCAGTAGTTCCTGTGGTAGAAAAGTTTCAAGAGAAAAAAAGCATTTCAAAGAAAGCTCAAGAATGTAACATCAAAGCCGAAACAAAACATCAAGATGTTATTATACCTGATGAAAATCAAGAAGAGACTGATGTGTTTGAAGTTCCTATCGAAAAGTTGGCAATTGAATTCAAAAAACATGATGTATTTGAAAAGGAACCTCAAACTCAACCAGCAACATCAGAGCCAGAGAAGCCTTTTGTGGAGGAGCTGACACTTAAAAACGAAGAAATAGCGTCGTTGAAATCAAGTTTGGAGGAAAAAAAGAAGGAACTGGAATCAATGAGTAATGAAAACGATAACCTGAAGAATCAACTGAATGAATCAGTTTCAAAAGTAAAAGCTGCTGAAACAAAGGAAGAAGGAATGACAATGGAGATGAAGAAATTGAGTAAAGAATTGGAAGCTAGTAAAGGGAATGCCGAGAAGTTGAATGAGAAGTTGAAATCTGTGGAAGAAGAAAAGGCAGGGTTAGAATCAGAAATGAAGAAGCTAAGGGTGCAGACAGAACAATGGAGAAAAGCAGCTGATGCTGCAGCTGCAGTGCTTGCAGGAGGTTTTGATATGAGTGCTGCTGCTAGGGTTCCTGAAAGGTGTGGTTCAATGGATAAGCACTTTGGCGGTGGAACATTTGAGACACCTGGTGGAAGGTATCATGGATATGTAGGTTCTCCTGGTATGGTTGATGATCTGGATGATGGTTTTGGTAGTGGAAAAAAGAAGGGTTCTTCTGGTATTAGAATGTTTGGTGATTTATGGAAGAAGAAAGGCCAAAAGTGA

Protein sequence

>MsG0280009794.01.T01

MFTAVNMFPYWNCTCVQSIMQQLERMVGLMQFMGKGTDLPQRQSPRGTHQLRTSSSDSDPSHHHRPVTERSPKLGDRRSPRGGTQSETVNQKKLGTRIADLESQLGQAQQELKNLKNQLSSAEAEKKKAEDELVKKAQSVVPVVEKFQEKKSISKKAQECNIKAETKHQDVIIPDENQEETDVFEVPIEKLAIEFKKHDVFEKEPQTQPATSEPEKPFVEELTLKNEEIASLKSSLEEKKKELESMSNENDNLKNQLNESVSKVKAAETKEEGMTMEMKKLSKELEASKGNAEKLNEKLKSVEEEKAGLESEMKKLRVQTEQWRKAADAAAAVLAGGFDMSAAARVPERCGSMDKHFGGGTFETPGGRYHGYVGSPGMVDDLDDGFGSGKKKGSSGIRMFGDLWKKKGQK*