AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008362.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008362.01.T01 MTR_2g040900 88.028 142 16 1 91 231 17 158 8.18e-89 260
MsG0280008362.01.T01 MTR_2g040830 62.937 143 53 0 87 229 173 315 7.39e-56 182
MsG0280008362.01.T01 MTR_2g040690 62.937 143 53 0 87 229 175 317 5.34e-55 179
MsG0280008362.01.T01 MTR_2g040650 58.442 154 60 2 76 229 162 311 2.00e-50 167
MsG0280008362.01.T01 MTR_2g040880 59.091 132 54 0 98 229 1 132 1.25e-48 157
MsG0280008362.01.T01 MTR_2g040740 55.195 154 65 2 76 229 165 314 4.21e-48 162
MsG0280008362.01.T01 MTR_1g099310 45.455 143 69 3 76 214 159 296 4.03e-33 122
MsG0280008362.01.T01 MTR_1g099290 50.000 122 57 2 89 210 177 294 6.25e-31 120
MsG0280008362.01.T01 MTR_1g099320 48.361 122 58 3 89 210 177 293 6.66e-29 110
MsG0280008362.01.T01 MTR_5g043550 40.310 129 69 4 88 214 172 294 5.54e-24 97.8
MsG0280008362.01.T01 MTR_0027s0260 40.625 128 68 4 89 214 177 298 1.62e-23 96.7
MsG0280008362.01.T01 MTR_8g055940 41.406 128 67 4 89 214 176 297 2.04e-23 96.3
MsG0280008362.01.T01 MTR_1g075047 86.667 45 6 0 28 72 29 73 2.42e-23 90.1
MsG0280008362.01.T01 MTR_7g116850 42.520 127 69 3 89 214 203 326 8.10e-23 95.1
MsG0280008362.01.T01 MTR_7g089470 88.889 45 5 0 28 72 61 105 8.57e-23 89.7
MsG0280008362.01.T01 MTR_8g080930 86.667 45 6 0 28 72 21 65 1.11e-22 88.2
MsG0280008362.01.T01 MTR_8g467650 40.476 126 71 3 89 214 177 298 1.03e-21 91.7
MsG0280008362.01.T01 MTR_1g081425 84.444 45 7 0 28 72 71 115 1.06e-20 84.7
MsG0280008362.01.T01 MTR_1g099350 38.095 126 74 3 89 214 170 291 1.06e-20 89.0
MsG0280008362.01.T01 MTR_8g021110 86.667 45 6 0 28 72 152 196 1.18e-20 86.7
MsG0280008362.01.T01 MTR_7g116350 37.984 129 72 4 89 215 163 285 1.45e-20 90.9
MsG0280008362.01.T01 MTR_2g102020 39.062 128 70 4 89 214 192 313 3.44e-19 85.5
MsG0280008362.01.T01 MTR_6g023340 39.231 130 72 5 88 214 177 302 8.21e-19 84.0
MsG0280008362.01.T01 MTR_4g083410 70.000 50 15 0 28 77 42 91 2.61e-17 75.1
MsG0280008362.01.T01 MTR_4g053360 78.571 42 9 0 31 72 36 77 1.70e-16 72.4
MsG0280008362.01.T01 MTR_2g040850 48.718 78 37 1 154 228 158 235 2.81e-16 75.9
MsG0280008362.01.T01 MTR_4g077310 39.024 82 46 1 119 200 3 80 9.81e-13 62.8
MsG0280008362.01.T01 MTR_8g017060 84.375 32 5 0 41 72 186 217 9.59e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008362.01.T01 AT5G24090 40.288 139 75 4 76 210 164 298 3.08e-24 98.6

Find 34 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATGGAGGAATTGTGATTT+GGG 0.311164 2:+29987533 MsG0280008362.01.T01:CDS
GAGTATGGTTCCCATGCTTT+AGG 0.324338 2:-29984103 None:intergenic
ACTATGGAGGAATTGTGATT+TGG 0.332298 2:+29987532 MsG0280008362.01.T01:CDS
TTGGACGTGGTTAGTTCAAC+TGG 0.354241 2:+29987395 MsG0280008362.01.T01:CDS
TTGCACGATCAAGGAATTCT+TGG 0.356971 2:+29987376 MsG0280008362.01.T01:CDS
AAACACAAATGGGCAAAGTT+TGG 0.358166 2:+29984220 MsG0280008362.01.T01:CDS
TGCAATTCGTGATGAACATT+TGG 0.367176 2:-29984184 None:intergenic
CTTGACAAAGCTATCAAAAC+TGG 0.381379 2:+29987273 MsG0280008362.01.T01:CDS
ATAACAAAGCTAATTTAATT+CGG 0.388147 2:-29987691 None:intergenic
GGTAACACCTCGGTCGAGTA+TGG 0.393796 2:-29984118 None:intergenic
GGTCGATGAATACATCAAAA+TGG 0.397308 2:+29983897 MsG0280008362.01.T01:CDS
AACATTTGGATCACGCAATT+CGG 0.397412 2:-29984170 None:intergenic
CAGATCTAGTGAAACACAAA+TGG 0.429354 2:+29984209 MsG0280008362.01.T01:CDS
GCTTTGTCAAGGTACTGATC+TGG 0.481492 2:-29987261 None:intergenic
ATACATTGCTTGCACGATCA+AGG 0.483316 2:+29987367 MsG0280008362.01.T01:CDS
CTGATCTGGAATAATACATT+GGG 0.492176 2:-29987247 None:intergenic
ACAATGCGAATGTTAGCATA+TGG 0.498998 2:+29983859 None:intergenic
TGTGGTATGTAACCACTACT+AGG 0.505291 2:-29987462 None:intergenic
CGCACATGATTTGCAAGAGC+GGG 0.515304 2:-29984139 None:intergenic
ACTGATCTGGAATAATACAT+TGG 0.537010 2:-29987248 None:intergenic
TCGTGCAAGCAATGTATCAT+TGG 0.540494 2:-29987361 None:intergenic
TTTCAATCTTATAACTATGG+AGG 0.547146 2:+29987519 MsG0280008362.01.T01:CDS
GCAATAGAAAAGGTTTGTCT+CGG 0.580829 2:+29987648 MsG0280008362.01.T01:CDS
AGATCTAGTGAAACACAAAT+GGG 0.586408 2:+29984210 MsG0280008362.01.T01:CDS
ATATGGTGTGGCAGCAGATG+CGG 0.594969 2:+29983876 MsG0280008362.01.T01:CDS
GCTACTGCAGCTCCTAGTAG+TGG 0.609914 2:+29987450 MsG0280008362.01.T01:CDS
TGCAAGAGCGGGTAACACCT+CGG 0.611721 2:-29984128 None:intergenic
GATCAAGGAATTCTTGGACG+TGG 0.637226 2:+29987382 MsG0280008362.01.T01:CDS
CGATGAATACATCAAAATGG+AGG 0.649669 2:+29983900 MsG0280008362.01.T01:CDS
AAATAGACGAGCATGTTAAG+CGG 0.653426 2:+29987592 MsG0280008362.01.T01:CDS
ACGCACATGATTTGCAAGAG+CGG 0.687028 2:-29984140 None:intergenic
TTAGATATGAGATAATCTTG+TGG 0.695616 2:-29987480 None:intergenic
ATGGGAACCATACTCGACCG+AGG 0.732019 2:+29984111 MsG0280008362.01.T01:CDS
GCGAATGTTAGCATATGGTG+TGG 0.754854 2:+29983864 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAATAAATAACATG+CGG + Chr2:29987053-29987072 MsG0280008362.01.T01:intron 10.0%
!! AAGAATATAAATAAAAAATG+GGG + Chr2:29984599-29984618 MsG0280008362.01.T01:intron 10.0%
!! TAACTAATTATATCTATTAT+AGG + Chr2:29987202-29987221 MsG0280008362.01.T01:intron 10.0%
!! TCGATATTTAATAAATTAAA+TGG - Chr2:29986054-29986073 None:intergenic 10.0%
!!! TTGATTTGAAATTAAATATT+TGG + Chr2:29985517-29985536 MsG0280008362.01.T01:intron 10.0%
!! AATTCTCTATGATAATATAT+TGG + Chr2:29985578-29985597 MsG0280008362.01.T01:intron 15.0%
!! AGAATATAAATAAAAAATGG+GGG + Chr2:29984600-29984619 MsG0280008362.01.T01:intron 15.0%
!! AGATAAGTAAAATAAATACA+AGG - Chr2:29986676-29986695 None:intergenic 15.0%
!! ATTCTCTATGATAATATATT+GGG + Chr2:29985579-29985598 MsG0280008362.01.T01:intron 15.0%
!!! ATATGACATGTATAAATTTT+TGG - Chr2:29986906-29986925 None:intergenic 15.0%
!!! ATTTTTCAATCTTATAACTA+TGG + Chr2:29987516-29987535 MsG0280008362.01.T01:CDS 15.0%
!!! TGTTGATTTATCAAAATTAT+AGG - Chr2:29986559-29986578 None:intergenic 15.0%
!!! TTAGTATTATGTTTTTTTGA+TGG + Chr2:29987128-29987147 MsG0280008362.01.T01:intron 15.0%
!!! TTATTTTACTTATCTTTGTA+AGG + Chr2:29986681-29986700 MsG0280008362.01.T01:intron 15.0%
!!! TTATTTTGTATAGACTAAAA+AGG + Chr2:29985816-29985835 MsG0280008362.01.T01:intron 15.0%
!! ATCAAAATTATAGGAATACT+TGG - Chr2:29986550-29986569 None:intergenic 20.0%
!! ATTATATTCTCAAGTAGTAT+TGG + Chr2:29986649-29986668 MsG0280008362.01.T01:intron 20.0%
!! GAATATAAATAAAAAATGGG+GGG + Chr2:29984601-29984620 MsG0280008362.01.T01:intron 20.0%
!! GCATGATTGAAAATATATTA+GGG - Chr2:29985880-29985899 None:intergenic 20.0%
!! TATTAAATATCGAGTAATTG+TGG + Chr2:29986061-29986080 MsG0280008362.01.T01:intron 20.0%
!! TGCATGATTGAAAATATATT+AGG - Chr2:29985881-29985900 None:intergenic 20.0%
!! TTATAAGATTGAAAAATGTG+AGG - Chr2:29987513-29987532 None:intergenic 20.0%
!! TTATATTCTCAAGTAGTATT+GGG + Chr2:29986650-29986669 MsG0280008362.01.T01:intron 20.0%
!!! AAGTTGTGATTTTGTTTTAT+AGG - Chr2:29985653-29985672 None:intergenic 20.0%
!!! AGTTGTGATTTTGTTTTATA+GGG - Chr2:29985652-29985671 None:intergenic 20.0%
!!! ATTAGGGTTAAATATGTTTT+TGG - Chr2:29985864-29985883 None:intergenic 20.0%
!!! ATTCGATCATATTGAATTTT+AGG - Chr2:29987336-29987355 None:intergenic 20.0%
!!! TAAAACAAAATCACAACTTT+TGG + Chr2:29985654-29985673 MsG0280008362.01.T01:intron 20.0%
!!! TATGCAAAATATTTTGTACT+CGG + Chr2:29985450-29985469 MsG0280008362.01.T01:intron 20.0%
!!! TTCGATCATATTGAATTTTA+GGG - Chr2:29987335-29987354 None:intergenic 20.0%
! AAATTAAATGGAGAATGACT+TGG - Chr2:29986042-29986061 None:intergenic 25.0%
! AAGTTCAAATATCACAATCA+TGG - Chr2:29985549-29985568 None:intergenic 25.0%
! ACCATTGTAAATGATCTAAA+TGG + Chr2:29985155-29985174 MsG0280008362.01.T01:intron 25.0%
! ACCATTTAGATCATTTACAA+TGG - Chr2:29985159-29985178 None:intergenic 25.0%
! ATACTACATGTTAGTGAAAT+CGG + Chr2:29984023-29984042 MsG0280008362.01.T01:intron 25.0%
! ATGAAAAAAGAGAGAACAAA+AGG - Chr2:29984883-29984902 None:intergenic 25.0%
! CTCATATTAAGTCTTAGATT+TGG - Chr2:29987091-29987110 None:intergenic 25.0%
! GAATGAGTTGTTGAATTATT+AGG + Chr2:29985070-29985089 MsG0280008362.01.T01:intron 25.0%
! GAGAAAATAAGGAAAAGAAA+AGG + Chr2:29984703-29984722 MsG0280008362.01.T01:intron 25.0%
! TATTTCCTTTCTTTGTTCTT+TGG + Chr2:29986834-29986853 MsG0280008362.01.T01:intron 25.0%
! TGTTTATGTAGATTCTGTAA+AGG + Chr2:29983939-29983958 MsG0280008362.01.T01:intron 25.0%
! TTAGACCTATTACAACTTAT+GGG - Chr2:29986726-29986745 None:intergenic 25.0%
! TTAGATATGAGATAATCTTG+TGG - Chr2:29987483-29987502 None:intergenic 25.0%
! TTATACTTTCTAATGCTTCT+AGG + Chr2:29984973-29984992 MsG0280008362.01.T01:intron 25.0%
! TTTAGACCTATTACAACTTA+TGG - Chr2:29986727-29986746 None:intergenic 25.0%
! TTTCAATCTTATAACTATGG+AGG + Chr2:29987519-29987538 MsG0280008362.01.T01:CDS 25.0%
!! ACTGGATAATAAAGTTTTCA+TGG + Chr2:29987413-29987432 MsG0280008362.01.T01:CDS 25.0%
!! CTGGATAATAAAGTTTTCAT+GGG + Chr2:29987414-29987433 MsG0280008362.01.T01:CDS 25.0%
!! TGTAACTATTTTCATCATCA+TGG - Chr2:29987566-29987585 None:intergenic 25.0%
!!! AAATTTTTGGATCTATCTGA+TGG - Chr2:29986893-29986912 None:intergenic 25.0%
!!! AGTTTTAATTTTTTGCTTGC+TGG + Chr2:29985371-29985390 MsG0280008362.01.T01:intron 25.0%
!!! ATTTTTTCTCTTTACCCAAA+TGG - Chr2:29986506-29986525 None:intergenic 25.0%
!!! TAAGAAGAGAAAAGTACTTA+AGG + Chr2:29984760-29984779 MsG0280008362.01.T01:intron 25.0%
!!! TGAATGAGTGTTGAATTATT+AGG + Chr2:29984671-29984690 MsG0280008362.01.T01:intron 25.0%
AAAAAAGAGAGAACAAAAGG+TGG - Chr2:29984880-29984899 None:intergenic 30.0%
AAATTCAAGACCTTTCATCA+TGG + Chr2:29986522-29986541 MsG0280008362.01.T01:intron 30.0%
AAGACTTAATATGAGACAAG+AGG + Chr2:29987096-29987115 MsG0280008362.01.T01:intron 30.0%
AAGATATTACCCACAAATGT+AGG - Chr2:29986013-29986032 None:intergenic 30.0%
AATACAATATACAAAGCACG+TGG - Chr2:29984341-29984360 None:intergenic 30.0%
AATTGGACAATTTATGTGTG+TGG + Chr2:29985244-29985263 MsG0280008362.01.T01:intron 30.0%
ACTATAATCGTACTATAACG+CGG - Chr2:29986942-29986961 None:intergenic 30.0%
AGATCTAGTGAAACACAAAT+GGG + Chr2:29984210-29984229 MsG0280008362.01.T01:CDS 30.0%
ATATAATTCTTAGTCCATGC+TGG - Chr2:29986636-29986655 None:intergenic 30.0%
GAAAAATTGTCCTAAAGCAT+GGG + Chr2:29984093-29984112 MsG0280008362.01.T01:CDS 30.0%
GAGAATGAGCAAATCTATTT+GGG - Chr2:29986245-29986264 None:intergenic 30.0%
GGGTAAAGAGAAAAATTCAA+AGG - Chr2:29986225-29986244 None:intergenic 30.0%
GTTTATAAATGACACAATGC+TGG + Chr2:29985762-29985781 MsG0280008362.01.T01:intron 30.0%
TAACATGTAGTATTCTTTGC+AGG - Chr2:29984016-29984035 None:intergenic 30.0%
TACTACATGTTAGTGAAATC+GGG + Chr2:29984024-29984043 MsG0280008362.01.T01:intron 30.0%
TCTTCTTAGACCATTTACAA+TGG - Chr2:29984748-29984767 None:intergenic 30.0%
TGAGAATGAGCAAATCTATT+TGG - Chr2:29986246-29986265 None:intergenic 30.0%
TGAGGAATAGAGTAAACTTA+CGG + Chr2:29985981-29986000 MsG0280008362.01.T01:intron 30.0%
TGAGTTGTTGAATTATTAGG+TGG + Chr2:29985073-29985092 MsG0280008362.01.T01:intron 30.0%
TGTAAATCTCGTGTAAATCT+CGG + Chr2:29986403-29986422 MsG0280008362.01.T01:intron 30.0%
! AAACTTTTCGTCAGCATTTT+TGG - Chr2:29985714-29985733 None:intergenic 30.0%
! AATATTTTGTACTCGGCTTT+CGG + Chr2:29985457-29985476 MsG0280008362.01.T01:intron 30.0%
! ACTGATCTGGAATAATACAT+TGG - Chr2:29987251-29987270 None:intergenic 30.0%
! AGTGTTGAAACCATTGTAAA+TGG + Chr2:29984735-29984754 MsG0280008362.01.T01:intron 30.0%
! CTGATCTGGAATAATACATT+GGG - Chr2:29987250-29987269 None:intergenic 30.0%
!! AGTTTTCAAGGCAATAGAAA+AGG + Chr2:29987638-29987657 MsG0280008362.01.T01:CDS 30.0%
!! ATGAGTGTTGAATTATTAGG+TGG + Chr2:29984674-29984693 MsG0280008362.01.T01:intron 30.0%
!! TGATGTGTTGTTTGATGTAA+CGG + Chr2:29984796-29984815 MsG0280008362.01.T01:intron 30.0%
AAACAATAACCACTTGCCAA+CGG + Chr2:29986143-29986162 MsG0280008362.01.T01:intron 35.0%
AAACACAAATGGGCAAAGTT+TGG + Chr2:29984220-29984239 MsG0280008362.01.T01:CDS 35.0%
AAATAGACGAGCATGTTAAG+CGG + Chr2:29987592-29987611 MsG0280008362.01.T01:CDS 35.0%
AACATTTGGATCACGCAATT+CGG - Chr2:29984173-29984192 None:intergenic 35.0%
ACTACATGTTAGTGAAATCG+GGG + Chr2:29984025-29984044 MsG0280008362.01.T01:intron 35.0%
ACTATGGAGGAATTGTGATT+TGG + Chr2:29987532-29987551 MsG0280008362.01.T01:CDS 35.0%
AGGTCTTTATGTAACAACGA+AGG - Chr2:29986205-29986224 None:intergenic 35.0%
ATACTTGGATCCATGATGAA+AGG - Chr2:29986535-29986554 None:intergenic 35.0%
ATCAACTTCTGCTGCATAAA+TGG + Chr2:29986114-29986133 MsG0280008362.01.T01:intron 35.0%
ATCTTTCCACTCTTCCTTAA+TGG - Chr2:29985223-29985242 None:intergenic 35.0%
CAAGTAATCTTACGATTGTG+AGG + Chr2:29985963-29985982 MsG0280008362.01.T01:intron 35.0%
CAGAACACATACAAAGAGAT+GGG - Chr2:29986177-29986196 None:intergenic 35.0%
CAGATCTAGTGAAACACAAA+TGG + Chr2:29984209-29984228 MsG0280008362.01.T01:CDS 35.0%
CGATGAATACATCAAAATGG+AGG + Chr2:29983900-29983919 MsG0280008362.01.T01:CDS 35.0%
CTATGCCAAAGAACAAAGAA+AGG - Chr2:29986842-29986861 None:intergenic 35.0%
CTATGGAGGAATTGTGATTT+GGG + Chr2:29987533-29987552 MsG0280008362.01.T01:CDS 35.0%
CTCACAATCGTAAGATTACT+TGG - Chr2:29985965-29985984 None:intergenic 35.0%
CTTGACAAAGCTATCAAAAC+TGG + Chr2:29987273-29987292 MsG0280008362.01.T01:CDS 35.0%
GAGAATGAGCAAATCCATTT+GGG + Chr2:29986489-29986508 MsG0280008362.01.T01:intron 35.0%
GCAATAGAAAAGGTTTGTCT+CGG + Chr2:29987648-29987667 MsG0280008362.01.T01:CDS 35.0%
GGAAAAATTGTCCTAAAGCA+TGG + Chr2:29984092-29984111 MsG0280008362.01.T01:CDS 35.0%
GGAAGAGTGGAAAGATAAAT+TGG + Chr2:29985227-29985246 MsG0280008362.01.T01:intron 35.0%
GGTCGATGAATACATCAAAA+TGG + Chr2:29983897-29983916 MsG0280008362.01.T01:CDS 35.0%
GTCTTGTGAAATCTTGAGTA+TGG + Chr2:29985266-29985285 MsG0280008362.01.T01:intron 35.0%
TATTCTTTGCAGGTCATCTT+GGG - Chr2:29984006-29984025 None:intergenic 35.0%
TGAGAATGAGCAAATCCATT+TGG + Chr2:29986488-29986507 MsG0280008362.01.T01:intron 35.0%
TGCAATTCGTGATGAACATT+TGG - Chr2:29984187-29984206 None:intergenic 35.0%
! AAAGTTTTCATGGGACTTCT+AGG + Chr2:29987423-29987442 MsG0280008362.01.T01:CDS 35.0%
! AGATTTGTTCATAGCCTTCA+AGG - Chr2:29986786-29986805 None:intergenic 35.0%
! ATTTGTGACGCAAGTTTTCA+AGG + Chr2:29987626-29987645 MsG0280008362.01.T01:CDS 35.0%
! TGCTGGCGAAATTTTTACAT+AGG + Chr2:29985779-29985798 MsG0280008362.01.T01:intron 35.0%
! TTGCTGGACATTATGGATTT+TGG + Chr2:29985387-29985406 MsG0280008362.01.T01:intron 35.0%
!! AAATGGAGGTACTACAACAT+TGG + Chr2:29983914-29983933 MsG0280008362.01.T01:intron 35.0%
!! GATGTGTTGTTTGATGTAAC+GGG + Chr2:29984797-29984816 MsG0280008362.01.T01:intron 35.0%
!! TATGGATTTTGGAGAACGTA+TGG + Chr2:29985398-29985417 MsG0280008362.01.T01:intron 35.0%
!! TCTATCTGATGGATTTGAGT+AGG - Chr2:29986882-29986901 None:intergenic 35.0%
!! TTTTTGCTTGCTGGACATTA+TGG + Chr2:29985380-29985399 MsG0280008362.01.T01:intron 35.0%
!!! CAGTTTTGATAGCTTTGTCA+AGG - Chr2:29987275-29987294 None:intergenic 35.0%
AACAATAACCACTTGCCAAC+GGG + Chr2:29986144-29986163 MsG0280008362.01.T01:intron 40.0%
ACGGATTCAACCTACATTTG+TGG + Chr2:29986000-29986019 MsG0280008362.01.T01:intron 40.0%
ATACATTGCTTGCACGATCA+AGG + Chr2:29987367-29987386 MsG0280008362.01.T01:CDS 40.0%
CCAGAACACATACAAAGAGA+TGG - Chr2:29986178-29986197 None:intergenic 40.0%
CCATCTCTTTGTATGTGTTC+TGG + Chr2:29986175-29986194 MsG0280008362.01.T01:intron 40.0%
CGGATTCAACCTACATTTGT+GGG + Chr2:29986001-29986020 MsG0280008362.01.T01:intron 40.0%
CTACATGTTAGTGAAATCGG+GGG + Chr2:29984026-29984045 MsG0280008362.01.T01:intron 40.0%
CTATTACAACTTATGGGCCT+GGG - Chr2:29986720-29986739 None:intergenic 40.0%
GGTGGAAGAGAGAGAAAATA+AGG + Chr2:29984692-29984711 MsG0280008362.01.T01:intron 40.0%
GTATTCTTTGCAGGTCATCT+TGG - Chr2:29984007-29984026 None:intergenic 40.0%
TCAAACCAAACACGCCATTA+AGG + Chr2:29985206-29985225 MsG0280008362.01.T01:intron 40.0%
TCGTGCAAGCAATGTATCAT+TGG - Chr2:29987364-29987383 None:intergenic 40.0%
TCTAGGTTCATGCATGTAAG+TGG + Chr2:29984990-29985009 MsG0280008362.01.T01:intron 40.0%
TGAAATCTTGAGTATGGCTG+TGG + Chr2:29985272-29985291 MsG0280008362.01.T01:intron 40.0%
TGTGGTATGTAACCACTACT+AGG - Chr2:29987465-29987484 None:intergenic 40.0%
TTGCACGATCAAGGAATTCT+TGG + Chr2:29987376-29987395 MsG0280008362.01.T01:CDS 40.0%
TTTGTTCATAGCCTTCAAGG+AGG - Chr2:29986783-29986802 None:intergenic 40.0%
! CACTAGCTCTTTAAGTAGCT+AGG - Chr2:29986758-29986777 None:intergenic 40.0%
!! AGTCCATGCTGGCTTAATTA+TGG - Chr2:29986625-29986644 None:intergenic 40.0%
AACACGCCATTAAGGAAGAG+TGG + Chr2:29985214-29985233 MsG0280008362.01.T01:intron 45.0%
ACAATAACCACTTGCCAACG+GGG + Chr2:29986145-29986164 MsG0280008362.01.T01:intron 45.0%
AGAACCCACAAAGACTCAAG+AGG + Chr2:29986598-29986617 MsG0280008362.01.T01:intron 45.0%
AGCATGAGTTAACTCACGCT+AGG + Chr2:29986307-29986326 MsG0280008362.01.T01:intron 45.0%
AGGTTCATGCATGTAAGTGG+TGG + Chr2:29984993-29985012 MsG0280008362.01.T01:intron 45.0%
CCAGGCCCATAAGTTGTAAT+AGG + Chr2:29986718-29986737 MsG0280008362.01.T01:intron 45.0%
CCTATTACAACTTATGGGCC+TGG - Chr2:29986721-29986740 None:intergenic 45.0%
CTCTTCCTTAATGGCGTGTT+TGG - Chr2:29985214-29985233 None:intergenic 45.0%
GAACCCACAAAGACTCAAGA+GGG + Chr2:29986599-29986618 MsG0280008362.01.T01:intron 45.0%
GAGTATGGTTCCCATGCTTT+AGG - Chr2:29984106-29984125 None:intergenic 45.0%
GATCAAGGAATTCTTGGACG+TGG + Chr2:29987382-29987401 MsG0280008362.01.T01:CDS 45.0%
GCATGAGTTAACTCACGCTA+GGG + Chr2:29986308-29986327 MsG0280008362.01.T01:intron 45.0%
TCGAGTAATTGTGGTCGAGT+TGG + Chr2:29986070-29986089 MsG0280008362.01.T01:intron 45.0%
! ACGCACATGATTTGCAAGAG+CGG - Chr2:29984143-29984162 None:intergenic 45.0%
! TTGGACGTGGTTAGTTCAAC+TGG + Chr2:29987395-29987414 MsG0280008362.01.T01:CDS 45.0%
!! GAGTATTGACTGCATGCACT+AGG + Chr2:29984066-29984085 MsG0280008362.01.T01:intron 45.0%
!! GCTTTGTCAAGGTACTGATC+TGG - Chr2:29987264-29987283 None:intergenic 45.0%
!!! TAACTTACGCAGGGGCATTT+TGG - Chr2:29986279-29986298 None:intergenic 45.0%
!! ATAAGAATATAAATAAAAAA+TGG + Chr2:29984597-29984616 MsG0280008362.01.T01:intron 5.0%
!! TAAGAATATAAATAAAAAAT+GGG + Chr2:29984598-29984617 MsG0280008362.01.T01:intron 5.0%
!! TATCTTATATTATTAATAAA+AGG - Chr2:29984439-29984458 None:intergenic 5.0%
!! TTTAAAAAAAAAAAAATCAT+TGG + Chr2:29985034-29985053 MsG0280008362.01.T01:intron 5.0%
AAGGACCTATCATGTGACCC+AGG + Chr2:29986700-29986719 MsG0280008362.01.T01:intron 50.0%
ATATGGTGTGGCAGCAGATG+CGG + Chr2:29983876-29983895 MsG0280008362.01.T01:CDS 50.0%
ATGGCCCTCTTGAGTCTTTG+TGG - Chr2:29986606-29986625 None:intergenic 50.0%
CAATACTCCCGATCATCCCT+GGG - Chr2:29984054-29984073 None:intergenic 50.0%
CGTGAGTTAACTCATGCTGC+GGG - Chr2:29986305-29986324 None:intergenic 50.0%
CTTTGCAGGTCATCTTGGGT+TGG - Chr2:29984002-29984021 None:intergenic 50.0%
GCGTGAGTTAACTCATGCTG+CGG - Chr2:29986306-29986325 None:intergenic 50.0%
GGGCCATAATTAAGCCAGCA+TGG + Chr2:29986619-29986638 MsG0280008362.01.T01:intron 50.0%
TCAATACTCCCGATCATCCC+TGG - Chr2:29984055-29984074 None:intergenic 50.0%
TGCGGGAGTTAACTTACGCA+GGG - Chr2:29986288-29986307 None:intergenic 50.0%
TGGCCCTCTTGAGTCTTTGT+GGG - Chr2:29986605-29986624 None:intergenic 50.0%
TTGACTGCATGCACTAGGAG+TGG + Chr2:29984071-29984090 MsG0280008362.01.T01:intron 50.0%
! CGCACATGATTTGCAAGAGC+GGG - Chr2:29984142-29984161 None:intergenic 50.0%
AGTGAAATCGGGGGTTCCCA+GGG + Chr2:29984035-29984054 MsG0280008362.01.T01:intron 55.0%
ATGGGAACCATACTCGACCG+AGG + Chr2:29984111-29984130 MsG0280008362.01.T01:CDS 55.0%
ATGGGCCTGGGTCACATGAT+AGG - Chr2:29986708-29986727 None:intergenic 55.0%
CTGCGGGAGTTAACTTACGC+AGG - Chr2:29986289-29986308 None:intergenic 55.0%
GAGCTAGTGTGCCTCCTTGA+AGG + Chr2:29986769-29986788 MsG0280008362.01.T01:intron 55.0%
GCGGGAGTTAACTTACGCAG+GGG - Chr2:29986287-29986306 None:intergenic 55.0%
GCTACTGCAGCTCCTAGTAG+TGG + Chr2:29987450-29987469 MsG0280008362.01.T01:CDS 55.0%
GGTAACACCTCGGTCGAGTA+TGG - Chr2:29984121-29984140 None:intergenic 55.0%
TAGTGAAATCGGGGGTTCCC+AGG + Chr2:29984034-29984053 MsG0280008362.01.T01:intron 55.0%
TGCAAGAGCGGGTAACACCT+CGG - Chr2:29984131-29984150 None:intergenic 55.0%
!! CATCTTGGGTTGGTGCTCTC+AGG - Chr2:29983992-29984011 None:intergenic 55.0%
GAGATGGGTGACAACCCCGT+TGG - Chr2:29986162-29986181 None:intergenic 60.0%
GTGACAACCCCGTTGGCAAG+TGG - Chr2:29986155-29986174 None:intergenic 60.0%
CGGGGGTTCCCAGGGATGAT+CGG + Chr2:29984043-29984062 MsG0280008362.01.T01:intron 65.0%
GGGGGTTCCCAGGGATGATC+GGG + Chr2:29984044-29984063 MsG0280008362.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 29983868 29987704 29983868 ID=MsG0280008362.01;Name=MsG0280008362.01
Chr2 mRNA 29983868 29987704 29983868 ID=MsG0280008362.01.T01;Parent=MsG0280008362.01;Name=MsG0280008362.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|3|0|245
Chr2 exon 29983868 29983921 29983868 ID=MsG0280008362.01.T01:exon:6686;Parent=MsG0280008362.01.T01
Chr2 exon 29984088 29984290 29984088 ID=MsG0280008362.01.T01:exon:6687;Parent=MsG0280008362.01.T01
Chr2 exon 29987224 29987704 29987224 ID=MsG0280008362.01.T01:exon:6688;Parent=MsG0280008362.01.T01
Chr2 CDS 29983868 29983921 29983868 ID=MsG0280008362.01.T01:cds;Parent=MsG0280008362.01.T01
Chr2 CDS 29984088 29984290 29984088 ID=MsG0280008362.01.T01:cds;Parent=MsG0280008362.01.T01
Chr2 CDS 29987224 29987704 29987224 ID=MsG0280008362.01.T01:cds;Parent=MsG0280008362.01.T01
Gene Sequence

>MsG0280008362.01.T01

ATGTTAGCATATGGTGTGGCAGCAGATGCGGTCGATGAATACATCAAAATGGAGGAGTGGAAAAATTGTCCTAAAGCATGGGAACCATACTCGACCGAGGTGTTACCCGCTCTTGCAAATCATGTGCGTGCTAGATCCGAATTGCGTGATCCAAATGTTCATCACGAATTGCAAGCAGATCTAGTGAAACACAAATGGGCAAAGTTTGGAATGTTCGTGATTGAAGATGATTTGTATCGTACTAATAATTTACTTGTGTACTTTTATTTAGCTGTTGCATCCCAATGTATTATTCCAGATCAGTACCTTGACAAAGCTATCAAAACTGGCTCATTTGATTATGCAATTGTTAAATTCTACAATAACCCTAAAATTCAATATGATCGAATAAACTCCAATGATACATTGCTTGCACGATCAAGGAATTCTTGGACGTGGTTAGTTCAACTGGATAATAAAGTTTTCATGGGACTTCTAGGATCAGCTACTGCAGCTCCTAGTAGTGGTTACATACCACAAGATTATCTCATATCTAATGTTCTTCCTCACATTTTTCAATCTTATAACTATGGAGGAATTGTGATTTGGGATAGATTCCATGATGATGAAAATAGTTACAACAAACAAATAGACGAGCATGTTAAGCGGCATGCTCTTCAATTTGTGACGCAAGTTTTCAAGGCAATAGAAAAGGTTTGTCTCGGCATCTTTGAACGTCTTGTTTCCGAATTAAATTAG
Protein sequence

>MsG0280008362.01.T01

MLAYGVAADAVDEYIKMEEWKNCPKAWEPYSTEVLPALANHVRARSELRDPNVHHELQADLVKHKWAKFGMFVIEDDLYRTNNLLVYFYLAVASQCIIPDQYLDKAIKTGSFDYAIVKFYNNPKIQYDRINSNDTLLARSRNSWTWLVQLDNKVFMGLLGSATAAPSSGYIPQDYLISNVLPHIFQSYNYGGIVIWDRFHDDENSYNKQIDEHVKRHALQFVTQVFKAIEKVCLGIFERLVSELN*