AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680033703.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033703.01.T01 MTR_8g098290 73.210 377 59 6 25 366 69 438 0.0 535
MsG0680033703.01.T01 MTR_8g098290 73.171 369 61 5 25 362 69 430 0.0 528
MsG0680033703.01.T01 MTR_5g010190 56.836 373 120 7 18 356 57 422 2.29e-132 386
MsG0680033703.01.T01 MTR_5g010190 56.836 373 120 7 18 356 57 422 2.86e-131 388
MsG0680033703.01.T01 MTR_8g098260 60.598 368 108 4 25 362 47 407 4.03e-125 390
MsG0680033703.01.T01 MTR_6g464540 48.286 350 88 8 29 357 50 327 9.89e-89 271
MsG0680033703.01.T01 MTR_6g007787 32.653 147 89 5 33 179 40 176 5.11e-15 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680033703.01.T01 AT4G11560 53.271 321 132 4 38 356 134 438 1.88e-106 321
MsG0680033703.01.T01 AT4G11560 53.271 321 132 4 38 356 134 438 2.41e-105 322
MsG0680033703.01.T01 AT2G25120 36.461 373 147 8 11 358 48 355 2.80e-53 181
MsG0680033703.01.T01 AT4G23120 39.815 324 138 9 38 361 62 328 9.74e-53 179
MsG0680033703.01.T01 AT3G43990 38.889 198 91 3 22 195 47 238 1.69e-32 125
MsG0680033703.01.T01 AT3G48050 38.281 128 69 4 52 179 67 184 1.13e-18 88.6
MsG0680033703.01.T01 AT3G48050 38.281 128 69 4 52 179 67 184 1.13e-18 88.6
MsG0680033703.01.T01 AT3G48060 38.281 128 69 4 52 179 67 184 1.14e-18 88.6
MsG0680033703.01.T01 AT3G48060 38.281 128 69 4 52 179 67 184 1.14e-18 88.6
MsG0680033703.01.T01 AT3G48060 38.281 128 69 4 52 179 68 185 1.17e-18 88.6

Find 68 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCATCAAGCTTCCATTT+TGG 0.220360 6:-71952738 None:intergenic
GCTAACTGATAAGGACTATA+TGG 0.249652 6:+71953002 MsG0680033703.01.T01:CDS
GCACAATTCCCTAGTGTTAC+TGG 0.271097 6:-71953210 None:intergenic
TCCTCTTCTTCTTCACTTGT+CGG 0.277410 6:-71951593 None:intergenic
ACACAAATGAATTAAAATTA+TGG 0.303300 6:+71952977 MsG0680033703.01.T01:CDS
GAAGGCATTAACAAAAGTTT+AGG 0.313579 6:+71953408 MsG0680033703.01.T01:CDS
CACTTTCTGCACAATAAAAC+CGG 0.353394 6:-71952950 None:intergenic
GACATCACACTATCCCAAAA+TGG 0.365544 6:+71952724 MsG0680033703.01.T01:CDS
ATCTGGAAGTTGTTTATGTA+AGG 0.375237 6:-71952914 None:intergenic
TGATCAGGAAGATCAGATTA+AGG 0.392137 6:+71953116 MsG0680033703.01.T01:CDS
TTCTCCAGAGAAACTACAAC+TGG 0.400172 6:-71953628 None:intergenic
AACCCATTGGTGAACCCGTT+AGG 0.409245 6:+71951639 MsG0680033703.01.T01:CDS
TCGAAATAGTCTCCATTCTC+TGG 0.411878 6:+71953185 MsG0680033703.01.T01:CDS
ACCCTAACGGGTTCACCAAT+GGG 0.417032 6:-71951641 None:intergenic
TGTCCCAGTTGTAGTTTCTC+TGG 0.418397 6:+71953624 MsG0680033703.01.T01:CDS
TTTCTTCATGTTTCTCTCAT+CGG 0.428331 6:-71953349 None:intergenic
ACCCATTGGTGAACCCGTTA+GGG 0.439054 6:+71951640 MsG0680033703.01.T01:CDS
TTGGTATTTAATCTCAAGGT+TGG 0.441893 6:+71953709 MsG0680033703.01.T01:CDS
ATGGGTTTAGCTTCTTCAAC+CGG 0.453256 6:-71951623 None:intergenic
GTGTTACTGGTTCCAGAGAA+TGG 0.464490 6:-71953197 None:intergenic
GGTTCATCGGTCTCGATGTC+AGG 0.469686 6:-71953087 None:intergenic
ATTATGGAAGCTAACTGATA+AGG 0.471633 6:+71952993 MsG0680033703.01.T01:CDS
CGATGAACCTGCTACTGATC+AGG 0.473067 6:+71953101 MsG0680033703.01.T01:CDS
CCGGGATGTTGCTTACGATC+TGG 0.478338 6:-71952931 None:intergenic
CTAACTGATAAGGACTATAT+GGG 0.482404 6:+71953003 MsG0680033703.01.T01:CDS
ACCTTGATAATTGCAACATA+CGG 0.483692 6:-71951944 None:intergenic
ACCTCAGGCAAAAGAAGCAC+AGG 0.490058 6:-71951908 None:intergenic
ATTCTGCAGGAACTTCATCT+TGG 0.491335 6:-71952855 None:intergenic
AACCCTAACGGGTTCACCAA+TGG 0.495069 6:-71951642 None:intergenic
CTGCAGGAACTTCATCTTGG+TGG 0.495652 6:-71952852 None:intergenic
AATGGAAGCTTGATGATCAC+AGG 0.509765 6:+71952742 MsG0680033703.01.T01:CDS
GTCAAGTGATGAGGCAGACA+AGG 0.511269 6:+71951556 MsG0680033703.01.T01:CDS
GATAGGAGAAACTTAAAGAA+TGG 0.512473 6:+71953138 MsG0680033703.01.T01:CDS
GCCGTATGTTGCAATTATCA+AGG 0.523913 6:+71951943 MsG0680033703.01.T01:CDS
ACAGTTGGTATTTAATCTCA+AGG 0.524514 6:+71953705 MsG0680033703.01.T01:CDS
TCTGATGTTATCAACAATGA+AGG 0.525828 6:+71953390 MsG0680033703.01.T01:CDS
TGATCTTCCTGATCAGTAGC+AGG 0.530712 6:-71953108 None:intergenic
TACAACTGGGACAGCAACAT+CGG 0.533867 6:-71953614 None:intergenic
ACAACTGGGACAGCAACATC+GGG 0.541960 6:-71953613 None:intergenic
ACCGACAAGTGAAGAAGAAG+AGG 0.547892 6:+71951592 MsG0680033703.01.T01:CDS
TGCATAACAACAGATTCTGC+AGG 0.560450 6:-71952868 None:intergenic
CGACAAACCCTTGTCACGAT+GGG 0.562197 6:-71953292 None:intergenic
AGGAAGATCAGATTAAGGAT+AGG 0.565443 6:+71953121 MsG0680033703.01.T01:CDS
AGAAGAAGAGGAAGAATCTC+CGG 0.566851 6:+71951604 MsG0680033703.01.T01:CDS
ATCGGGCCAGACAAAAGACT+TGG 0.569970 6:-71953596 None:intergenic
TAAAATTCACTAATATGCGA+TGG 0.571172 6:-71953251 None:intergenic
TCTGGAAGTTGTTTATGTAA+GGG 0.574210 6:-71952913 None:intergenic
GCTTGATGATCACAGGGCAG+TGG 0.574881 6:+71952749 MsG0680033703.01.T01:CDS
CTGATCAGTAGCAGGTTCAT+CGG 0.585277 6:-71953100 None:intergenic
TGGAGATACCCATCGTGACA+AGG 0.593342 6:+71953284 MsG0680033703.01.T01:CDS
TCTCTGGAACCAGTAACACT+AGG 0.596217 6:+71953201 MsG0680033703.01.T01:CDS
CAAACAAAAGCTACGACAGT+TGG 0.596612 6:+71953690 MsG0680033703.01.T01:CDS
CCAGATCGTAAGCAACATCC+CGG 0.596848 6:+71952931 MsG0680033703.01.T01:CDS
AAAGATGAAGTCAAGTGATG+AGG 0.598053 6:+71951547 None:intergenic
CTCTGGAACCAGTAACACTA+GGG 0.598631 6:+71953202 MsG0680033703.01.T01:CDS
GTTGAAGAAGCTAAACCCAT+TGG 0.601202 6:+71951626 MsG0680033703.01.T01:CDS
ATCTAAAGACAAAGTTCCGA+AGG 0.608846 6:+71953443 MsG0680033703.01.T01:CDS
TAATATGCGATGGTGCTCAA+AGG 0.610864 6:-71953241 None:intergenic
TCGACAAACCCTTGTCACGA+TGG 0.616965 6:-71953293 None:intergenic
AAGTGATGAGGCAGACAAGG+AGG 0.636000 6:+71951559 MsG0680033703.01.T01:CDS
CATTGTTGATAACATCAGAA+CGG 0.643575 6:-71953386 None:intergenic
GGAGATACCCATCGTGACAA+GGG 0.650994 6:+71953285 MsG0680033703.01.T01:CDS
ATGGAAGCTTGATGATCACA+GGG 0.656842 6:+71952743 MsG0680033703.01.T01:CDS
ACTTTCTGCACAATAAAACC+GGG 0.665770 6:-71952949 None:intergenic
CCTCAGGCAAAAGAAGCACA+GGG 0.680303 6:-71951907 None:intergenic
TGTTGTTATGCATAAGTGTG+TGG 0.681709 6:+71952879 MsG0680033703.01.T01:CDS
TCTCCAGAGAAACTACAACT+GGG 0.710558 6:-71953627 None:intergenic
AACATGAAGAAAGACAAATG+TGG 0.712043 6:+71953360 MsG0680033703.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACACAAATGAATTAAAATTA+TGG + Chr6:71952977-71952996 MsG0680033703.01.T01:CDS 15.0%
!! ATATTAATATGATGATATTG+TGG + Chr6:71952229-71952248 MsG0680033703.01.T01:intron 15.0%
!! ATATTGTTGTGTATAAATAA+AGG + Chr6:71952138-71952157 MsG0680033703.01.T01:intron 15.0%
!! TATATAATTTATTCCGAAAA+AGG - Chr6:71952007-71952026 None:intergenic 15.0%
!! TGTTATAAACTTATAATGAT+AGG + Chr6:71952643-71952662 MsG0680033703.01.T01:intron 15.0%
!!! AAAAATTTTAGAGTTGAATT+TGG - Chr6:71951817-71951836 None:intergenic 15.0%
!!! GTTTTTAAGATAACTTATAA+AGG + Chr6:71952324-71952343 MsG0680033703.01.T01:intron 15.0%
!! AAATAAATCTAAGCAACAAA+TGG - Chr6:71953484-71953503 None:intergenic 20.0%
!! AATAAATCTAAGCAACAAAT+GGG - Chr6:71953483-71953502 None:intergenic 20.0%
!! ATAGTATTAGTAGTTTAACA+AGG - Chr6:71951975-71951994 None:intergenic 20.0%
!! TATATAACAACTCGAAAATT+TGG - Chr6:71952585-71952604 None:intergenic 20.0%
!! TCATATTAATATATCAACCA+CGG - Chr6:71952221-71952240 None:intergenic 20.0%
!!! AATTCTATGTGCTTAATTTT+TGG + Chr6:71952099-71952118 MsG0680033703.01.T01:intron 20.0%
!!! ATACAACTTATTGTTATTCT+TGG + Chr6:71951858-71951877 MsG0680033703.01.T01:intron 20.0%
! AAAGGAAAAAAAAAAAGAGG+AGG - Chr6:71951762-71951781 None:intergenic 25.0%
! AACCTAAAAAAAAAACAGAC+AGG - Chr6:71952302-71952321 None:intergenic 25.0%
! ACAAGGAATCTAATCTAAAA+AGG - Chr6:71952490-71952509 None:intergenic 25.0%
! AGTTATAAACCTCAAGAAAA+AGG - Chr6:71953535-71953554 None:intergenic 25.0%
! ATCAGAAAATAGAAAAGAGA+AGG - Chr6:71952680-71952699 None:intergenic 25.0%
! ATGTACAGATTATCAACAAA+GGG - Chr6:71952063-71952082 None:intergenic 25.0%
! CATATTAATATATCAACCAC+GGG - Chr6:71952220-71952239 None:intergenic 25.0%
! GCAAAAGGAAAAAAAAAAAG+AGG - Chr6:71951765-71951784 None:intergenic 25.0%
! GTTATAAACCTCAAGAAAAA+GGG - Chr6:71953534-71953553 None:intergenic 25.0%
! TAAAATTCACTAATATGCGA+TGG - Chr6:71953254-71953273 None:intergenic 25.0%
! TCAGAAAATAGAAAAGAGAA+GGG - Chr6:71952679-71952698 None:intergenic 25.0%
! TTATCAAAAGCCAAAAAATG+AGG - Chr6:71952554-71952573 None:intergenic 25.0%
!! AAGATAACTTATAAAGGTGT+TGG + Chr6:71952330-71952349 MsG0680033703.01.T01:intron 25.0%
!! ACTTAAAGAATGGTGTTTTA+AGG + Chr6:71953148-71953167 MsG0680033703.01.T01:CDS 25.0%
!! TTATATACTAGAAGTGCATA+TGG + Chr6:71952020-71952039 MsG0680033703.01.T01:intron 25.0%
!!! ACTTTTGTTTTTTGTTCTCT+CGG + Chr6:71952362-71952381 MsG0680033703.01.T01:intron 25.0%
!!! CTTAAAGAATGGTGTTTTAA+GGG + Chr6:71953149-71953168 MsG0680033703.01.T01:CDS 25.0%
!!! GGTGTGATTTTTAATTATCA+TGG - Chr6:71952401-71952420 None:intergenic 25.0%
!!! TGGACATTACTTTTTCAATA+TGG + Chr6:71953729-71953748 MsG0680033703.01.T01:CDS 25.0%
!!! TTTTTTGGCTTTTGATAACA+AGG + Chr6:71952556-71952575 MsG0680033703.01.T01:intron 25.0%
AACATGAAGAAAGACAAATG+TGG + Chr6:71953360-71953379 MsG0680033703.01.T01:CDS 30.0%
ACTAATCACAACAGTTAATC+TGG - Chr6:71952422-71952441 None:intergenic 30.0%
ATCTGGAAGTTGTTTATGTA+AGG - Chr6:71952917-71952936 None:intergenic 30.0%
ATTATGGAAGCTAACTGATA+AGG + Chr6:71952993-71953012 MsG0680033703.01.T01:CDS 30.0%
ATTCATATACGAGTGTGTAT+TGG - Chr6:71951724-71951743 None:intergenic 30.0%
CAAAAAACTCGTCAATGTTT+GGG + Chr6:71953057-71953076 MsG0680033703.01.T01:CDS 30.0%
CATGTACAGATTATCAACAA+AGG - Chr6:71952064-71952083 None:intergenic 30.0%
CTAACTGATAAGGACTATAT+GGG + Chr6:71953003-71953022 MsG0680033703.01.T01:CDS 30.0%
CTTGACAAAAAAAACATCTC+TGG - Chr6:71952705-71952724 None:intergenic 30.0%
GATAGGAGAAACTTAAAGAA+TGG + Chr6:71953138-71953157 MsG0680033703.01.T01:CDS 30.0%
TCAAAAAACTCGTCAATGTT+TGG + Chr6:71953056-71953075 MsG0680033703.01.T01:CDS 30.0%
TCTGATGTTATCAACAATGA+AGG + Chr6:71953390-71953409 MsG0680033703.01.T01:CDS 30.0%
TCTGGAAGTTGTTTATGTAA+GGG - Chr6:71952916-71952935 None:intergenic 30.0%
TTGGTATTTAATCTCAAGGT+TGG + Chr6:71953709-71953728 MsG0680033703.01.T01:CDS 30.0%
TTTCTTCATGTTTCTCTCAT+CGG - Chr6:71953352-71953371 None:intergenic 30.0%
! ACAGTTGGTATTTAATCTCA+AGG + Chr6:71953705-71953724 MsG0680033703.01.T01:CDS 30.0%
! ACCTTGATAATTGCAACATA+CGG - Chr6:71951947-71951966 None:intergenic 30.0%
! TTTTATGTCTCTTCCTTTTC+CGG - Chr6:71951669-71951688 None:intergenic 30.0%
!! ATAACTTATAAAGGTGTTGG+TGG + Chr6:71952333-71952352 MsG0680033703.01.T01:intron 30.0%
!! CATTGTTGATAACATCAGAA+CGG - Chr6:71953389-71953408 None:intergenic 30.0%
!! GAAGGCATTAACAAAAGTTT+AGG + Chr6:71953408-71953427 MsG0680033703.01.T01:CDS 30.0%
!! TATAAATAAAGGTGTTGTCG+TGG + Chr6:71952149-71952168 MsG0680033703.01.T01:intron 30.0%
!!! CTCCTGTCTGTTTTTTTTTT+AGG + Chr6:71952297-71952316 MsG0680033703.01.T01:intron 30.0%
AAAAAAACAGACAGGAGAAG+AGG - Chr6:71952294-71952313 None:intergenic 35.0%
ACTTTCTGCACAATAAAACC+GGG - Chr6:71952952-71952971 None:intergenic 35.0%
AGGAAGATCAGATTAAGGAT+AGG + Chr6:71953121-71953140 MsG0680033703.01.T01:CDS 35.0%
ATCTAAAGACAAAGTTCCGA+AGG + Chr6:71953443-71953462 MsG0680033703.01.T01:CDS 35.0%
ATGATATTGTGGATGAGATC+AGG + Chr6:71952240-71952259 MsG0680033703.01.T01:intron 35.0%
CACTTTCTGCACAATAAAAC+CGG - Chr6:71952953-71952972 None:intergenic 35.0%
CCAGATGAAGCAGAAAAAAA+GGG + Chr6:71952781-71952800 MsG0680033703.01.T01:CDS 35.0%
CGTGCATATTGAACAAAACA+AGG - Chr6:71952507-71952526 None:intergenic 35.0%
GCTAACTGATAAGGACTATA+TGG + Chr6:71953002-71953021 MsG0680033703.01.T01:CDS 35.0%
GGAGTTCTGTAGATTGAAAA+AGG - Chr6:71953578-71953597 None:intergenic 35.0%
TCCAGATGAAGCAGAAAAAA+AGG + Chr6:71952780-71952799 MsG0680033703.01.T01:CDS 35.0%
TGATCAGGAAGATCAGATTA+AGG + Chr6:71953116-71953135 MsG0680033703.01.T01:CDS 35.0%
TGTTGTTATGCATAAGTGTG+TGG + Chr6:71952879-71952898 MsG0680033703.01.T01:CDS 35.0%
TTCGCATGTTGTCACTATTT+GGG + Chr6:71951787-71951806 MsG0680033703.01.T01:intron 35.0%
TTTCGCATGTTGTCACTATT+TGG + Chr6:71951786-71951805 MsG0680033703.01.T01:intron 35.0%
! ATTGTCTTCCCTTTTTCTTG+AGG + Chr6:71953523-71953542 MsG0680033703.01.T01:intron 35.0%
! CTATATTTACGCGCCTTTTT+CGG + Chr6:71951991-71952010 MsG0680033703.01.T01:intron 35.0%
! GATCATCAAGCTTCCATTTT+GGG - Chr6:71952740-71952759 None:intergenic 35.0%
! GGCTTTTGATATTTAACCTC+AGG - Chr6:71951926-71951945 None:intergenic 35.0%
! TGATCATCAAGCTTCCATTT+TGG - Chr6:71952741-71952760 None:intergenic 35.0%
!!! AAAGAATGGTGTTTTAAGGG+AGG + Chr6:71953152-71953171 MsG0680033703.01.T01:CDS 35.0%
!!! GTGAATTTTAAAGCGCTAAC+TGG + Chr6:71953264-71953283 MsG0680033703.01.T01:CDS 35.0%
!!! TCAATATGCACGTGTTGTTT+TGG + Chr6:71952515-71952534 MsG0680033703.01.T01:intron 35.0%
AGAAGAAGAGGAAGAATCTC+CGG + Chr6:71951604-71951623 MsG0680033703.01.T01:CDS 40.0%
ATTCTGCAGGAACTTCATCT+TGG - Chr6:71952858-71952877 None:intergenic 40.0%
CAAACAAAAGCTACGACAGT+TGG + Chr6:71953690-71953709 MsG0680033703.01.T01:CDS 40.0%
GACAACATGCGAAAAGCAAA+AGG - Chr6:71951780-71951799 None:intergenic 40.0%
GACATCACACTATCCCAAAA+TGG + Chr6:71952724-71952743 MsG0680033703.01.T01:CDS 40.0%
GATGAAGCAGAAAAAAAGGG+AGG + Chr6:71952784-71952803 MsG0680033703.01.T01:CDS 40.0%
GCCGTATGTTGCAATTATCA+AGG + Chr6:71951943-71951962 MsG0680033703.01.T01:CDS 40.0%
GTGTTACATACTCTTTCTGC+AGG + Chr6:71951880-71951899 MsG0680033703.01.T01:intron 40.0%
GTTGAAGAAGCTAAACCCAT+TGG + Chr6:71951626-71951645 MsG0680033703.01.T01:CDS 40.0%
TAATATGCGATGGTGCTCAA+AGG - Chr6:71953244-71953263 None:intergenic 40.0%
TCCTCTTCTTCTTCACTTGT+CGG - Chr6:71951596-71951615 None:intergenic 40.0%
TCGAAATAGTCTCCATTCTC+TGG + Chr6:71953185-71953204 MsG0680033703.01.T01:CDS 40.0%
TCTCCAGAGAAACTACAACT+GGG - Chr6:71953630-71953649 None:intergenic 40.0%
TGCATAACAACAGATTCTGC+AGG - Chr6:71952871-71952890 None:intergenic 40.0%
TTACATACTCTTTCTGCAGG+AGG + Chr6:71951883-71951902 MsG0680033703.01.T01:intron 40.0%
TTCTCCAGAGAAACTACAAC+TGG - Chr6:71953631-71953650 None:intergenic 40.0%
! AATGGAAGCTTGATGATCAC+AGG + Chr6:71952742-71952761 MsG0680033703.01.T01:CDS 40.0%
! AGAACTCCAAGTCTTTTGTC+TGG + Chr6:71953590-71953609 MsG0680033703.01.T01:intron 40.0%
! ATGGAAGCTTGATGATCACA+GGG + Chr6:71952743-71952762 MsG0680033703.01.T01:CDS 40.0%
! ATGGGTTTAGCTTCTTCAAC+CGG - Chr6:71951626-71951645 None:intergenic 40.0%
! GATTTTCAAAAATTCGCCCG+TGG + Chr6:71952201-71952220 MsG0680033703.01.T01:intron 40.0%
!! GGTACTTCAAGAAGTACCTT+CGG - Chr6:71953462-71953481 None:intergenic 40.0%
!!! CCCTTTTTTTCTGCTTCATC+TGG - Chr6:71952784-71952803 None:intergenic 40.0%
!!! TTGTTTTTTGTTCTCTCGGC+TGG + Chr6:71952366-71952385 MsG0680033703.01.T01:intron 40.0%
AAAAAAAGGGAGGTGGTAGC+TGG + Chr6:71952794-71952813 MsG0680033703.01.T01:CDS 45.0%
ACCGACAAGTGAAGAAGAAG+AGG + Chr6:71951592-71951611 MsG0680033703.01.T01:CDS 45.0%
CTGATCAGTAGCAGGTTCAT+CGG - Chr6:71953103-71953122 None:intergenic 45.0%
GAAGCAGAAAAAAAGGGAGG+TGG + Chr6:71952787-71952806 MsG0680033703.01.T01:CDS 45.0%
GCACAATTCCCTAGTGTTAC+TGG - Chr6:71953213-71953232 None:intergenic 45.0%
TACAACTGGGACAGCAACAT+CGG - Chr6:71953617-71953636 None:intergenic 45.0%
TGATCTTCCTGATCAGTAGC+AGG - Chr6:71953111-71953130 None:intergenic 45.0%
TGTCCCAGTTGTAGTTTCTC+TGG + Chr6:71953624-71953643 MsG0680033703.01.T01:CDS 45.0%
TTTCAGTCCTTCGATCTCCT+TGG + Chr6:71951695-71951714 MsG0680033703.01.T01:intron 45.0%
! TCCTTTTCCGGAAACCCTAA+CGG - Chr6:71951657-71951676 None:intergenic 45.0%
!! CTCTGGAACCAGTAACACTA+GGG + Chr6:71953202-71953221 MsG0680033703.01.T01:CDS 45.0%
!! GTGTTACTGGTTCCAGAGAA+TGG - Chr6:71953200-71953219 None:intergenic 45.0%
!! TCTCTGGAACCAGTAACACT+AGG + Chr6:71953201-71953220 MsG0680033703.01.T01:CDS 45.0%
!!! ACGTGTTGTTTTGGCATGTC+GGG + Chr6:71952524-71952543 MsG0680033703.01.T01:intron 45.0%
!!! CACGTGTTGTTTTGGCATGT+CGG + Chr6:71952523-71952542 MsG0680033703.01.T01:intron 45.0%
!!! GTCGGGTTGTCCTCATTTTT+TGG + Chr6:71952541-71952560 MsG0680033703.01.T01:intron 45.0%
AACCCATTGGTGAACCCGTT+AGG + Chr6:71951639-71951658 MsG0680033703.01.T01:CDS 50.0%
AAGTGATGAGGCAGACAAGG+AGG + Chr6:71951559-71951578 MsG0680033703.01.T01:CDS 50.0%
ACAACTGGGACAGCAACATC+GGG - Chr6:71953616-71953635 None:intergenic 50.0%
ACCCATTGGTGAACCCGTTA+GGG + Chr6:71951640-71951659 MsG0680033703.01.T01:CDS 50.0%
ATCGGGCCAGACAAAAGACT+TGG - Chr6:71953599-71953618 None:intergenic 50.0%
CCAGATCGTAAGCAACATCC+CGG + Chr6:71952931-71952950 MsG0680033703.01.T01:CDS 50.0%
CGACAAACCCTTGTCACGAT+GGG - Chr6:71953295-71953314 None:intergenic 50.0%
CGATGAACCTGCTACTGATC+AGG + Chr6:71953101-71953120 MsG0680033703.01.T01:CDS 50.0%
CTGCAGGAACTTCATCTTGG+TGG - Chr6:71952855-71952874 None:intergenic 50.0%
GGAGATACCCATCGTGACAA+GGG + Chr6:71953285-71953304 MsG0680033703.01.T01:CDS 50.0%
GTCAAGTGATGAGGCAGACA+AGG + Chr6:71951556-71951575 MsG0680033703.01.T01:CDS 50.0%
GTGGATGAGATCAGGCAGAT+GGG + Chr6:71952248-71952267 MsG0680033703.01.T01:intron 50.0%
TCGACAAACCCTTGTCACGA+TGG - Chr6:71953296-71953315 None:intergenic 50.0%
TGGAGATACCCATCGTGACA+AGG + Chr6:71953284-71953303 MsG0680033703.01.T01:CDS 50.0%
TGTGGATGAGATCAGGCAGA+TGG + Chr6:71952247-71952266 MsG0680033703.01.T01:intron 50.0%
TTGGTCTCCAAGGAGATCGA+AGG - Chr6:71951705-71951724 None:intergenic 50.0%
! ACCTCAGGCAAAAGAAGCAC+AGG - Chr6:71951911-71951930 None:intergenic 50.0%
! CCTCAGGCAAAAGAAGCACA+GGG - Chr6:71951910-71951929 None:intergenic 50.0%
! CCTTTTCCGGAAACCCTAAC+GGG - Chr6:71951656-71951675 None:intergenic 50.0%
! CGAGTGTGTATTGGTCTCCA+AGG - Chr6:71951715-71951734 None:intergenic 50.0%
!! AACCCTAACGGGTTCACCAA+TGG - Chr6:71951645-71951664 None:intergenic 50.0%
!! ACCCTAACGGGTTCACCAAT+GGG - Chr6:71951644-71951663 None:intergenic 50.0%
CCCGTTAGGGTTTCCGGAAA+AGG + Chr6:71951653-71951672 MsG0680033703.01.T01:intron 55.0%
GGTGAACCCGTTAGGGTTTC+CGG + Chr6:71951647-71951666 MsG0680033703.01.T01:intron 55.0%
GGTTCATCGGTCTCGATGTC+AGG - Chr6:71953090-71953109 None:intergenic 55.0%
! CCCTGTGCTTCTTTTGCCTG+AGG + Chr6:71951907-71951926 MsG0680033703.01.T01:CDS 55.0%
! CCGGGATGTTGCTTACGATC+TGG - Chr6:71952934-71952953 None:intergenic 55.0%
! GCTTGATGATCACAGGGCAG+TGG + Chr6:71952749-71952768 MsG0680033703.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 71951551 71953759 71951551 ID=MsG0680033703.01;Name=MsG0680033703.01
Chr6 mRNA 71951551 71953759 71951551 ID=MsG0680033703.01.T01;Parent=MsG0680033703.01;Name=MsG0680033703.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|1|1|4|0|366
Chr6 exon 71951551 71951661 71951551 ID=MsG0680033703.01.T01:exon:4435;Parent=MsG0680033703.01.T01
Chr6 exon 71951902 71951964 71951902 ID=MsG0680033703.01.T01:exon:4434;Parent=MsG0680033703.01.T01
Chr6 exon 71952706 71953464 71952706 ID=MsG0680033703.01.T01:exon:4433;Parent=MsG0680033703.01.T01
Chr6 exon 71953592 71953759 71953592 ID=MsG0680033703.01.T01:exon:4432;Parent=MsG0680033703.01.T01
Chr6 CDS 71951551 71951661 71951551 ID=MsG0680033703.01.T01:cds;Parent=MsG0680033703.01.T01
Chr6 CDS 71951902 71951964 71951902 ID=MsG0680033703.01.T01:cds;Parent=MsG0680033703.01.T01
Chr6 CDS 71952706 71953464 71952706 ID=MsG0680033703.01.T01:cds;Parent=MsG0680033703.01.T01
Chr6 CDS 71953592 71953759 71953592 ID=MsG0680033703.01.T01:cds;Parent=MsG0680033703.01.T01
Gene Sequence

>MsG0680033703.01.T01

ATGAAGTCAAGTGATGAGGCAGACAAGGAGGAAGAAGTTGAACCGACAAGTGAAGAAGAAGAGGAAGAATCTCCGGTTGAAGAAGCTAAACCCATTGGTGAACCCGTTAGGGAGGACCCTGTGCTTCTTTTGCCTGAGGTTAAATATCAAAAGCCGTATGTTGCAATTATCAAGAGATGTTTTTTTTGTCAAGACATCACACTATCCCAAAATGGAAGCTTGATGATCACAGGGCAGTGGTTTTATCGTCCAGATGAAGCAGAAAAAAAGGGAGGTGGTAGCTGGAAATCGATTGACAACAGAGAGTTGTTTTATAGTTTCCACCAAGATGAAGTTCCTGCAGAATCTGTTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCTTACATAAACAACTTCCAGATCGTAAGCAACATCCCGGTTTTATTGTGCAGAAAGTGTATGACACAAATGAATTAAAATTATGGAAGCTAACTGATAAGGACTATATGGGCAATAATCAACAAGAAATAGATGAGCTTGTTCAAAAAACTCGTCAATGTTTGGGTGAACTACCTGACATCGAGACCGATGAACCTGCTACTGATCAGGAAGATCAGATTAAGGATAGGAGAAACTTAAAGAATGGTGTTTTAAGGGAGGATGAAACATCTCGAAATAGTCTCCATTCTCTGGAACCAGTAACACTAGGGAATTGTGCAACAAATTCCTTTGAGCACCATCGCATATTAGTGAATTTTAAAGCGCTAACTGGAGATACCCATCGTGACAAGGGTTTGTCGATGTTGCTTCAAAATGTTCAATACTTGTTTGATACCGATGAGAGAAACATGAAGAAAGACAAATGTGGTGACCGTTCTGATGTTATCAACAATGAAGGCATTAACAAAAGTTTAGGAATAGCAAATGAATCTAAAGACAAAGTTCCGAAGAACTCCAAGTCTTTTGTCTGGCCCGATGTTGCTGTCCCAGTTGTAGTTTCTCTGGAGAAAGCTTTATACGATACATTTTCATCAGATTATCAGAAGTACAAACAAAAGCTACGACAGTTGGTATTTAATCTCAAGGTTGGACATTACTTTTTCAATATGGATTGTTAA
Protein sequence

>MsG0680033703.01.T01

MKSSDEADKEEEVEPTSEEEEEESPVEEAKPIGEPVREDPVLLLPEVKYQKPYVAIIKRCFFCQDITLSQNGSLMITGQWFYRPDEAEKKGGGSWKSIDNRELFYSFHQDEVPAESVVMHKCVVHFVPLHKQLPDRKQHPGFIVQKVYDTNELKLWKLTDKDYMGNNQQEIDELVQKTRQCLGELPDIETDEPATDQEDQIKDRRNLKNGVLREDETSRNSLHSLEPVTLGNCATNSFEHHRILVNFKALTGDTHRDKGLSMLLQNVQYLFDTDERNMKKDKCGDRSDVINNEGINKSLGIANESKDKVPKNSKSFVWPDVAVPVVVSLEKALYDTFSSDYQKYKQKLRQLVFNLKVGHYFFNMDC*