AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043427.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043427.01.T01 MTR_8g035500 96.259 294 11 0 1 294 1 294 0.0 603
MsG0880043427.01.T01 MTR_8g035540 42.517 294 163 4 5 294 2 293 4.68e-84 256
MsG0880043427.01.T01 MTR_8g035520 42.955 291 160 4 2 290 11 297 1.88e-81 249
MsG0880043427.01.T01 MTR_6g464510 39.865 296 164 5 5 294 16 303 1.04e-76 238
MsG0880043427.01.T01 MTR_1g102170 39.116 294 164 5 2 290 28 311 3.52e-69 219
MsG0880043427.01.T01 MTR_1g102160 38.667 300 167 6 4 294 11 302 3.72e-68 216
MsG0880043427.01.T01 MTR_6g464280 37.037 297 173 5 5 294 12 301 5.94e-67 213
MsG0880043427.01.T01 MTR_6g464120 39.310 290 164 6 5 290 17 298 1.12e-65 215
MsG0880043427.01.T01 MTR_6g464320 35.690 297 177 6 5 294 13 302 1.95e-64 206
MsG0880043427.01.T01 MTR_0007s0520 36.140 285 163 7 15 290 24 298 2.17e-59 193
MsG0880043427.01.T01 MTR_7g406880 34.375 288 175 5 12 287 29 314 2.45e-52 176
MsG0880043427.01.T01 MTR_6g065110 35.206 267 154 6 29 287 48 303 2.12e-46 160
MsG0880043427.01.T01 MTR_6g065270 32.414 290 176 5 10 287 23 304 3.62e-44 154
MsG0880043427.01.T01 MTR_1g111280 32.550 298 180 9 12 299 34 320 3.93e-44 154
MsG0880043427.01.T01 MTR_6g065120 33.333 282 167 7 17 287 33 304 3.06e-43 151
MsG0880043427.01.T01 MTR_6g065400 31.930 285 174 6 13 287 28 302 1.89e-41 147
MsG0880043427.01.T01 MTR_6g065370 31.317 281 173 6 17 287 32 302 2.79e-41 146
MsG0880043427.01.T01 MTR_7g107040 32.394 284 170 8 12 287 15 284 5.73e-40 142
MsG0880043427.01.T01 MTR_6g065430 33.213 277 168 7 17 287 31 296 9.04e-39 139
MsG0880043427.01.T01 MTR_6g065340 31.560 282 155 8 17 287 43 297 1.95e-36 133
MsG0880043427.01.T01 MTR_4g050140 29.839 248 164 4 44 287 42 283 7.05e-36 131
MsG0880043427.01.T01 MTR_4g086510 31.621 253 163 4 33 283 35 279 3.46e-35 130
MsG0880043427.01.T01 MTR_1g082210 31.561 301 175 9 8 290 25 312 1.18e-33 126
MsG0880043427.01.T01 MTR_3g012440 31.760 233 154 3 56 287 73 301 5.25e-32 122
MsG0880043427.01.T01 MTR_7g056207 31.557 244 155 5 43 283 77 311 6.55e-32 122
MsG0880043427.01.T01 MTR_4g086480 31.225 253 161 5 33 283 39 280 1.72e-31 120
MsG0880043427.01.T01 MTR_3g101420 29.893 281 169 9 12 283 15 276 4.14e-31 119
MsG0880043427.01.T01 MTR_7g093950 29.470 302 180 9 8 287 25 315 4.53e-31 119
MsG0880043427.01.T01 MTR_4g086470 31.621 253 160 5 33 283 38 279 2.09e-30 117
MsG0880043427.01.T01 MTR_1g089310 31.164 292 166 10 8 279 25 301 2.71e-30 117
MsG0880043427.01.T01 MTR_1g089310 31.164 292 166 10 8 279 41 317 3.47e-30 117
MsG0880043427.01.T01 MTR_5g005920 29.537 281 184 9 17 290 26 299 4.46e-29 114
MsG0880043427.01.T01 MTR_0007s0480 39.161 143 78 3 157 290 2 144 5.54e-29 109
MsG0880043427.01.T01 MTR_1g012430 34.199 231 128 7 17 241 16 228 2.24e-27 108
MsG0880043427.01.T01 MTR_4g086540 32.620 187 115 3 17 203 31 206 2.25e-26 106
MsG0880043427.01.T01 MTR_1g105020 32.117 274 169 10 17 283 21 284 9.62e-26 104
MsG0880043427.01.T01 MTR_5g005900 29.545 264 168 8 17 271 22 276 3.38e-25 103
MsG0880043427.01.T01 MTR_5g005850 33.058 242 136 10 17 246 26 253 2.20e-24 101
MsG0880043427.01.T01 MTR_3g450680 31.579 266 158 10 17 271 29 281 4.55e-24 100
MsG0880043427.01.T01 MTR_6g022710 28.906 256 145 7 64 284 147 400 7.87e-24 101
MsG0880043427.01.T01 MTR_8g040860 30.798 263 161 10 17 271 29 278 5.16e-23 97.4
MsG0880043427.01.T01 MTR_7g051020 30.769 273 173 11 17 283 25 287 6.59e-21 91.7
MsG0880043427.01.T01 MTR_1g104930 30.403 273 171 11 17 283 25 284 4.99e-20 89.0
MsG0880043427.01.T01 MTR_1g104933 30.081 246 154 8 43 283 46 278 2.80e-17 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043427.01.T01 AT2G45610 52.397 292 138 1 4 294 9 300 4.95e-112 327
MsG0880043427.01.T01 AT2G45600 41.196 301 149 8 5 294 9 292 2.99e-76 236
MsG0880043427.01.T01 AT5G62180 37.075 294 171 6 5 290 9 296 9.77e-66 209
MsG0880043427.01.T01 AT1G68620 32.567 261 163 6 17 275 36 285 4.97e-38 137
MsG0880043427.01.T01 AT5G16080 31.179 263 166 8 32 288 54 307 1.45e-33 126
MsG0880043427.01.T01 AT5G23530 30.292 274 169 8 16 283 34 291 2.77e-33 125
MsG0880043427.01.T01 AT5G06570 33.878 245 151 7 44 283 50 288 5.15e-32 122
MsG0880043427.01.T01 AT5G06570 33.878 245 151 7 44 283 50 288 5.15e-32 122
MsG0880043427.01.T01 AT5G06570 33.878 245 151 7 44 283 65 303 5.42e-32 122
MsG0880043427.01.T01 AT5G06570 33.878 245 151 7 44 283 65 303 5.42e-32 122
MsG0880043427.01.T01 AT5G27320 29.530 298 178 9 8 287 25 308 7.84e-31 119
MsG0880043427.01.T01 AT3G63010 30.104 289 168 9 16 286 37 309 8.85e-30 116
MsG0880043427.01.T01 AT3G05120 29.470 302 175 10 8 287 25 310 2.49e-28 112
MsG0880043427.01.T01 AT1G19190 28.947 266 166 7 26 283 25 275 2.06e-27 109
MsG0880043427.01.T01 AT1G47480 28.676 272 174 7 12 281 16 269 2.61e-26 106
MsG0880043427.01.T01 AT5G14310 29.688 256 143 5 65 284 142 396 5.83e-26 107
MsG0880043427.01.T01 AT3G48690 28.929 280 181 7 12 283 13 282 1.14e-25 104
MsG0880043427.01.T01 AT3G27320 28.897 263 149 6 58 284 118 378 3.34e-24 102
MsG0880043427.01.T01 AT2G03550 28.244 262 176 4 29 289 28 278 3.68e-24 100
MsG0880043427.01.T01 AT3G27320 28.897 263 149 6 58 284 150 410 4.56e-24 102
MsG0880043427.01.T01 AT1G49640 31.868 182 117 3 22 202 21 196 1.09e-23 99.0
MsG0880043427.01.T01 AT1G49650 32.979 188 116 4 17 201 74 254 5.23e-23 98.2
MsG0880043427.01.T01 AT1G49660 27.407 270 183 6 17 282 18 278 1.03e-22 96.7
MsG0880043427.01.T01 AT3G48700 27.404 208 142 4 33 234 32 236 1.99e-21 93.2

Find 103 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAAATGTCAAGAAATT+AGG 0.125161 8:+24642126 MsG0880043427.01.T01:CDS
CCATCGAGGTGTTATCTTTA+TGG 0.162050 8:+24641271 MsG0880043427.01.T01:CDS
ATCATCAATTGTTATGTCTT+TGG 0.205110 8:-24640933 None:intergenic
CTCAATCCAAAGTGGTTATA+TGG 0.248180 8:-24640821 None:intergenic
TTAGGGAGGTGTCTTGTTAT+TGG 0.287339 8:+24642144 MsG0880043427.01.T01:CDS
TTCGGGGTTCGCGTCGGTTG+AGG 0.309991 8:-24640885 None:intergenic
TGGAAAATGTCAAGAAATTA+GGG 0.314810 8:+24642127 MsG0880043427.01.T01:CDS
AAAGGACGGCCTCGGAAATA+AGG 0.329749 8:+24641410 MsG0880043427.01.T01:CDS
TAGGGAGGTGTCTTGTTATT+GGG 0.337672 8:+24642145 MsG0880043427.01.T01:CDS
AATGGCAAAAGGACCACATT+TGG 0.377354 8:+24642107 MsG0880043427.01.T01:CDS
GTCGGTTGAGGGTGTCTTGT+AGG 0.384926 8:-24640873 None:intergenic
CGCGAACCCCGAACCTTCAC+CGG 0.388207 8:+24640895 MsG0880043427.01.T01:CDS
ATATTGATTTACTTTCATAA+TGG 0.392883 8:+24641031 MsG0880043427.01.T01:CDS
ATATGGACTTAGAGCCTCTA+AGG 0.394329 8:+24641344 MsG0880043427.01.T01:CDS
TCGGGGTTCGCGTCGGTTGA+GGG 0.394609 8:-24640884 None:intergenic
GGCCATTCAGATTGGAGATA+TGG 0.409202 8:+24641327 MsG0880043427.01.T01:CDS
TGGGCCATGGCTTTGCCTAC+GGG 0.409884 8:+24642054 MsG0880043427.01.T01:CDS
ACAAGGCCACTAATCCTTAG+AGG 0.416771 8:-24641358 None:intergenic
GACTTTGCCCTTACCAGTGT+TGG 0.417668 8:+24642023 MsG0880043427.01.T01:CDS
TTCAATACGGCCATTCAGAT+TGG 0.423842 8:+24641319 MsG0880043427.01.T01:CDS
TTACTTTCATAATGGTGGTT+GGG 0.428229 8:+24641039 MsG0880043427.01.T01:CDS
GTGGGCCATGGCTTTGCCTA+CGG 0.428532 8:+24642053 MsG0880043427.01.T01:CDS
ATAACCGCACTAGCTCTAGT+AGG 0.431582 8:-24642287 None:intergenic
TTTACTTTCATAATGGTGGT+TGG 0.431824 8:+24641038 MsG0880043427.01.T01:CDS
TTTGATCCATATAACCACTT+TGG 0.433703 8:+24640815 MsG0880043427.01.T01:CDS
AGGTGTCTTGTTATTGGGTA+TGG 0.434253 8:+24642150 MsG0880043427.01.T01:CDS
TATCTTTATGGATGTGGTTG+TGG 0.434607 8:+24641283 MsG0880043427.01.T01:CDS
TGTCTCTGTCGCCTTTCGTT+GGG 0.438448 8:+24641135 MsG0880043427.01.T01:CDS
CTCAACCATTGCTCTCCATC+AGG 0.438600 8:-24641235 None:intergenic
TTATGAAAGTAAATCAATAT+CGG 0.442305 8:-24641028 None:intergenic
TCGAGCATCTTGATATTGTC+CGG 0.444661 8:-24641176 None:intergenic
ATCCTAAGCCCGGCTGATGC+TGG 0.450512 8:+24641064 MsG0880043427.01.T01:CDS
TTGTCTCTGTCGCCTTTCGT+TGG 0.451494 8:+24641134 MsG0880043427.01.T01:CDS
CCATTGGATTGCAATACCTA+TGG 0.454707 8:-24642089 None:intergenic
TGAAGCTAGGTTTGATCCTG+TGG 0.455072 8:+24642239 MsG0880043427.01.T01:CDS
TGGGTTCCACAATATTGATA+TGG 0.461340 8:+24642259 MsG0880043427.01.T01:CDS
TTAGAGCCTCTAAGGATTAG+TGG 0.468499 8:+24641352 MsG0880043427.01.T01:CDS
GCCACGGTATTGTCGTTTGA+TGG 0.470251 8:-24640998 None:intergenic
TTATGGGTACCAGCATCAGC+CGG 0.476238 8:-24641073 None:intergenic
TACCAGCATCAGCCGGGCTT+AGG 0.478525 8:-24641066 None:intergenic
GCGACAGAGACAACAATACT+AGG 0.481339 8:-24641124 None:intergenic
GAGCAATGGTTGAGAGACTA+TGG 0.482302 8:+24641244 MsG0880043427.01.T01:CDS
GCGAACCCCGAACCTTCACC+GGG 0.488799 8:+24640896 MsG0880043427.01.T01:CDS
CATCATGTCCAACACTGGTA+AGG 0.489057 8:-24642031 None:intergenic
AGGTGTTATCTTTATGGATG+TGG 0.490354 8:+24641277 MsG0880043427.01.T01:CDS
GTTGGTCAAATGTGGGGTCC+AGG 0.492083 8:+24642215 MsG0880043427.01.T01:CDS
TGGAGAGAAAAGGACGGCCT+CGG 0.492416 8:+24641402 MsG0880043427.01.T01:CDS
TTCGTTGGGCGCCAGAGACT+AGG 0.511728 8:+24641149 MsG0880043427.01.T01:CDS
TTGATTTACTTTCATAATGG+TGG 0.512216 8:+24641034 MsG0880043427.01.T01:CDS
TGTCTTGTTATTGGGTATGG+TGG 0.512697 8:+24642153 MsG0880043427.01.T01:CDS
TGACCATGTTGGTCAAATGT+GGG 0.525547 8:+24642208 MsG0880043427.01.T01:CDS
AATTATGAACCTTATTTCCG+AGG 0.528856 8:-24641419 None:intergenic
TATTGCAATCCAATGGCAAA+AGG 0.529808 8:+24642096 MsG0880043427.01.T01:CDS
ACACTGGTAAGGGCAAAGTC+TGG 0.531768 8:-24642020 None:intergenic
ATCAATATTGTGGAACCCAC+AGG 0.532361 8:-24642255 None:intergenic
GTGACCATGTTGGTCAAATG+TGG 0.535257 8:+24642207 MsG0880043427.01.T01:CDS
TTCTTCCAAAAGGTTTGCAA+CGG 0.535946 8:+24641996 MsG0880043427.01.T01:intron
TATGGGTACCAGCATCAGCC+GGG 0.538444 8:-24641072 None:intergenic
GAAGCTAGGTTTGATCCTGT+GGG 0.539393 8:+24642240 MsG0880043427.01.T01:CDS
AATCAAATGACGAATCCTGA+TGG 0.539467 8:+24641220 MsG0880043427.01.T01:CDS
GTCCATATCTCCAATCTGAA+TGG 0.540037 8:-24641329 None:intergenic
TGTCCGGGTAACCTAGTCTC+TGG 0.551902 8:-24641160 None:intergenic
TTGAGGGTGTCTTGTAGGCA+CGG 0.553474 8:-24640868 None:intergenic
TACCAGTGTTGGACATGATG+TGG 0.554021 8:+24642034 MsG0880043427.01.T01:CDS
TGGGTATGGTGGAGACATCA+TGG 0.554451 8:+24642164 MsG0880043427.01.T01:CDS
GTTGGACATGATGTGGGCCA+TGG 0.554890 8:+24642041 MsG0880043427.01.T01:CDS
GGTCAACCATATCAATATTG+TGG 0.557103 8:-24642265 None:intergenic
GTGGGGTCCAGGTTGAAGCT+AGG 0.557168 8:+24642226 MsG0880043427.01.T01:CDS
CATAAAGATAACACCTCGAT+GGG 0.558427 8:-24641270 None:intergenic
TGCAAACATTGTGTTCAATA+CGG 0.560159 8:+24641306 MsG0880043427.01.T01:CDS
CAATATCGGTAAACGCGCCA+CGG 0.563423 8:-24641014 None:intergenic
GGATTGAGTTTCAATCCTGA+CGG 0.564876 8:+24640836 MsG0880043427.01.T01:CDS
TGAAGGTTCGGGGTTCGCGT+CGG 0.566328 8:-24640891 None:intergenic
AGTCTCTGGCGCCCAACGAA+AGG 0.566700 8:-24641146 None:intergenic
CGAGCATCTTGATATTGTCC+GGG 0.569073 8:-24641175 None:intergenic
GCACGGTGGAGAGTTCCGTC+AGG 0.576931 8:-24640851 None:intergenic
TAACCGCACTAGCTCTAGTA+GGG 0.577127 8:-24642286 None:intergenic
TGGTTGGGTCATCCTAAGCC+CGG 0.577877 8:+24641054 MsG0880043427.01.T01:CDS
ATCATGTCCAACACTGGTAA+GGG 0.578520 8:-24642030 None:intergenic
CCATAAAGATAACACCTCGA+TGG 0.586600 8:-24641271 None:intergenic
GCCCACATCATGTCCAACAC+TGG 0.603571 8:-24642036 None:intergenic
GCGCCAGAGACTAGGTTACC+CGG 0.604483 8:+24641157 MsG0880043427.01.T01:CDS
GGGCCATGGCTTTGCCTACG+GGG 0.610243 8:+24642055 MsG0880043427.01.T01:CDS
CGGGGACAAATCGTGACCAT+AGG 0.613124 8:+24642073 MsG0880043427.01.T01:CDS
CCATAGGTATTGCAATCCAA+TGG 0.617062 8:+24642089 MsG0880043427.01.T01:CDS
ACATAGGTTGATTCATAACA+AGG 0.617116 8:-24641375 None:intergenic
GATCAAACCTAGCTTCAACC+TGG 0.619274 8:-24642233 None:intergenic
GAACCCCGAACCTTCACCGG+GGG 0.629310 8:+24640898 MsG0880043427.01.T01:CDS
ACCAGTGTTGGACATGATGT+GGG 0.635087 8:+24642035 MsG0880043427.01.T01:CDS
ACAAGAATTTGTGACCATGT+TGG 0.638031 8:+24642197 MsG0880043427.01.T01:CDS
TTGGACACCGTAGAAACCCC+CGG 0.639060 8:-24640914 None:intergenic
GATTGAAACTCAATCCAAAG+TGG 0.656440 8:-24640829 None:intergenic
TGTCCCCGTAGGCAAAGCCA+TGG 0.658805 8:-24642058 None:intergenic
GACCATGTTGGTCAAATGTG+GGG 0.660571 8:+24642209 MsG0880043427.01.T01:CDS
TGACCCTACTAGAGCTAGTG+CGG 0.675155 8:+24642283 MsG0880043427.01.T01:CDS
TGGTCACGATTTGTCCCCGT+AGG 0.679424 8:-24642069 None:intergenic
AAAATGTCAAGAAATTAGGG+AGG 0.680447 8:+24642130 MsG0880043427.01.T01:CDS
CGAATCCTGATGGAGAGCAA+TGG 0.687815 8:+24641230 MsG0880043427.01.T01:CDS
GACCCCACATTTGACCAACA+TGG 0.691227 8:-24642211 None:intergenic
GAGACTATGGTGACCCATCG+AGG 0.705564 8:+24641257 MsG0880043427.01.T01:CDS
ACCATCAAACGACAATACCG+TGG 0.707154 8:+24640997 MsG0880043427.01.T01:CDS
AGGGTGTCTTGTAGGCACGG+TGG 0.724739 8:-24640865 None:intergenic
CGAACCCCGAACCTTCACCG+GGG 0.774672 8:+24640897 MsG0880043427.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATTTCAAACATCTATA+AGG - Chr8:24641833-24641852 None:intergenic 15.0%
!! TTATGAAAGTAAATCAATAT+CGG - Chr8:24641031-24641050 None:intergenic 15.0%
!!! ATATTGATTTACTTTCATAA+TGG + Chr8:24641031-24641050 MsG0880043427.01.T01:CDS 15.0%
!!! ATTTCATTTTAGTTTTATAG+AGG + Chr8:24641771-24641790 MsG0880043427.01.T01:intron 15.0%
!!! AAAATATATCTTGACTTGTT+TGG + Chr8:24641526-24641545 MsG0880043427.01.T01:intron 20.0%
!!! AAGATTCGAACATTTTTTAT+GGG - Chr8:24641092-24641111 None:intergenic 20.0%
!!! TGATGATGAGAAAAAAATAT+GGG + Chr8:24640949-24640968 MsG0880043427.01.T01:CDS 20.0%
!!! TTGATGATGAGAAAAAAATA+TGG + Chr8:24640948-24640967 MsG0880043427.01.T01:CDS 20.0%
! AATTTCAAACATCTATAAGG+TGG - Chr8:24641830-24641849 None:intergenic 25.0%
! ATCATCAATTGTTATGTCTT+TGG - Chr8:24640936-24640955 None:intergenic 25.0%
! CAAAATTACTCATTATCATG+TGG + Chr8:24641914-24641933 MsG0880043427.01.T01:intron 25.0%
! TGGAAAATGTCAAGAAATTA+GGG + Chr8:24642127-24642146 MsG0880043427.01.T01:CDS 25.0%
! TTGATTTACTTTCATAATGG+TGG + Chr8:24641034-24641053 MsG0880043427.01.T01:CDS 25.0%
! TTGGAAAATGTCAAGAAATT+AGG + Chr8:24642126-24642145 MsG0880043427.01.T01:CDS 25.0%
!! TTTCTTTCTTTTCTTCCAAA+AGG + Chr8:24641986-24642005 MsG0880043427.01.T01:intron 25.0%
!!! CAAGATTCGAACATTTTTTA+TGG - Chr8:24641093-24641112 None:intergenic 25.0%
AAAATGTCAAGAAATTAGGG+AGG + Chr8:24642130-24642149 MsG0880043427.01.T01:CDS 30.0%
GTCTTGATTCAAAGAGATTA+AGG - Chr8:24641895-24641914 None:intergenic 30.0%
GTGGTTTCTAATACAATAAG+AGG - Chr8:24641811-24641830 None:intergenic 30.0%
TGAGAATACACATATCTCTT+TGG + Chr8:24641496-24641515 MsG0880043427.01.T01:intron 30.0%
TGCAAACATTGTGTTCAATA+CGG + Chr8:24641306-24641325 MsG0880043427.01.T01:CDS 30.0%
TTACTTTCATAATGGTGGTT+GGG + Chr8:24641039-24641058 MsG0880043427.01.T01:CDS 30.0%
TTGATTCAAAGAGATTAAGG+TGG - Chr8:24641892-24641911 None:intergenic 30.0%
TTTACTTTCATAATGGTGGT+TGG + Chr8:24641038-24641057 MsG0880043427.01.T01:CDS 30.0%
TTTGATCCATATAACCACTT+TGG + Chr8:24640815-24640834 MsG0880043427.01.T01:CDS 30.0%
! AAATATGGGTTCGAATTTTC+AGG + Chr8:24640963-24640982 MsG0880043427.01.T01:CDS 30.0%
! AATTATGAACCTTATTTCCG+AGG - Chr8:24641422-24641441 None:intergenic 30.0%
! ATGAATCAACCTATGTTTTC+TGG + Chr8:24641382-24641401 MsG0880043427.01.T01:CDS 30.0%
! GTAAGTTCCTGCTATAATTT+TGG + Chr8:24641635-24641654 MsG0880043427.01.T01:intron 30.0%
! TAAATGATGATGCCTATGTT+TGG - Chr8:24641687-24641706 None:intergenic 30.0%
! TTCTTGACATTTTCCAAATG+TGG - Chr8:24642123-24642142 None:intergenic 30.0%
! TTTAAAGCCAAACCAAACAT+TGG + Chr8:24641849-24641868 MsG0880043427.01.T01:intron 30.0%
!! ACATAGGTTGATTCATAACA+AGG - Chr8:24641378-24641397 None:intergenic 30.0%
AATCAAATGACGAATCCTGA+TGG + Chr8:24641220-24641239 MsG0880043427.01.T01:CDS 35.0%
ACAAGAATTTGTGACCATGT+TGG + Chr8:24642197-24642216 MsG0880043427.01.T01:CDS 35.0%
CATAAAGATAACACCTCGAT+GGG - Chr8:24641273-24641292 None:intergenic 35.0%
CATCAAGCCAAAATTATAGC+AGG - Chr8:24641645-24641664 None:intergenic 35.0%
CTCAATCCAAAGTGGTTATA+TGG - Chr8:24640824-24640843 None:intergenic 35.0%
GAGAAATCAAGAGACAAATG+AGG - Chr8:24641728-24641747 None:intergenic 35.0%
GATTGAAACTCAATCCAAAG+TGG - Chr8:24640832-24640851 None:intergenic 35.0%
GGTCAACCATATCAATATTG+TGG - Chr8:24642268-24642287 None:intergenic 35.0%
TATCTTTATGGATGTGGTTG+TGG + Chr8:24641283-24641302 MsG0880043427.01.T01:CDS 35.0%
TATTGCAATCCAATGGCAAA+AGG + Chr8:24642096-24642115 MsG0880043427.01.T01:CDS 35.0%
TGGGTTCCACAATATTGATA+TGG + Chr8:24642259-24642278 MsG0880043427.01.T01:CDS 35.0%
TGTTGATCCAATGTTTGGTT+TGG - Chr8:24641859-24641878 None:intergenic 35.0%
TTCTTCCAAAAGGTTTGCAA+CGG + Chr8:24641996-24642015 MsG0880043427.01.T01:intron 35.0%
! AGGTGTTATCTTTATGGATG+TGG + Chr8:24641277-24641296 MsG0880043427.01.T01:CDS 35.0%
! CTTTTCTCTCCAGAAAACAT+AGG - Chr8:24641394-24641413 None:intergenic 35.0%
!! AGTCTTGTTGATCCAATGTT+TGG - Chr8:24641864-24641883 None:intergenic 35.0%
!! CTATGTTTTCTGGAGAGAAA+AGG + Chr8:24641392-24641411 MsG0880043427.01.T01:CDS 35.0%
!!! ATTTTGGCTTGATGTGGAAA+TGG + Chr8:24641651-24641670 MsG0880043427.01.T01:intron 35.0%
!!! GCTATAATTTTGGCTTGATG+TGG + Chr8:24641645-24641664 MsG0880043427.01.T01:intron 35.0%
!!! TCGTTTGATGGTAGTTTTGT+TGG - Chr8:24640989-24641008 None:intergenic 35.0%
AATGGCAAAAGGACCACATT+TGG + Chr8:24642107-24642126 MsG0880043427.01.T01:CDS 40.0%
ATATGGACTTAGAGCCTCTA+AGG + Chr8:24641344-24641363 MsG0880043427.01.T01:CDS 40.0%
ATCAATATTGTGGAACCCAC+AGG - Chr8:24642258-24642277 None:intergenic 40.0%
ATCATGTCCAACACTGGTAA+GGG - Chr8:24642033-24642052 None:intergenic 40.0%
CCATAAAGATAACACCTCGA+TGG - Chr8:24641274-24641293 None:intergenic 40.0%
CCATTGGATTGCAATACCTA+TGG - Chr8:24642092-24642111 None:intergenic 40.0%
GGATTGAGTTTCAATCCTGA+CGG + Chr8:24640836-24640855 MsG0880043427.01.T01:CDS 40.0%
GTCCATATCTCCAATCTGAA+TGG - Chr8:24641332-24641351 None:intergenic 40.0%
TCGAGCATCTTGATATTGTC+CGG - Chr8:24641179-24641198 None:intergenic 40.0%
TGACCATGTTGGTCAAATGT+GGG + Chr8:24642208-24642227 MsG0880043427.01.T01:CDS 40.0%
TTCAATACGGCCATTCAGAT+TGG + Chr8:24641319-24641338 MsG0880043427.01.T01:CDS 40.0%
! AAATGTGGTCCTTTTGCCAT+TGG - Chr8:24642108-24642127 None:intergenic 40.0%
! CCATAGGTATTGCAATCCAA+TGG + Chr8:24642089-24642108 MsG0880043427.01.T01:CDS 40.0%
! CCATCGAGGTGTTATCTTTA+TGG + Chr8:24641271-24641290 MsG0880043427.01.T01:CDS 40.0%
! GAACATTTTCTCGTGTCTCA+AGG + Chr8:24641559-24641578 MsG0880043427.01.T01:intron 40.0%
! TTAGAGCCTCTAAGGATTAG+TGG + Chr8:24641352-24641371 MsG0880043427.01.T01:CDS 40.0%
!! AGGTGTCTTGTTATTGGGTA+TGG + Chr8:24642150-24642169 MsG0880043427.01.T01:CDS 40.0%
!! GTTTTCTGGAGAGAAAAGGA+CGG + Chr8:24641396-24641415 MsG0880043427.01.T01:CDS 40.0%
!! TAGGGAGGTGTCTTGTTATT+GGG + Chr8:24642145-24642164 MsG0880043427.01.T01:CDS 40.0%
!! TGTCTTGTTATTGGGTATGG+TGG + Chr8:24642153-24642172 MsG0880043427.01.T01:CDS 40.0%
!! TTAGGGAGGTGTCTTGTTAT+TGG + Chr8:24642144-24642163 MsG0880043427.01.T01:CDS 40.0%
!!! ATGCTCGAGATGCTATTTTG+TGG + Chr8:24641191-24641210 MsG0880043427.01.T01:CDS 40.0%
!!! TGCTCGAGATGCTATTTTGT+GGG + Chr8:24641192-24641211 MsG0880043427.01.T01:CDS 40.0%
ACAAGGCCACTAATCCTTAG+AGG - Chr8:24641361-24641380 None:intergenic 45.0%
ACCATCAAACGACAATACCG+TGG + Chr8:24640997-24641016 MsG0880043427.01.T01:CDS 45.0%
CATCATGTCCAACACTGGTA+AGG - Chr8:24642034-24642053 None:intergenic 45.0%
CGAGCATCTTGATATTGTCC+GGG - Chr8:24641178-24641197 None:intergenic 45.0%
GAAGCTAGGTTTGATCCTGT+GGG + Chr8:24642240-24642259 MsG0880043427.01.T01:CDS 45.0%
GACCATGTTGGTCAAATGTG+GGG + Chr8:24642209-24642228 MsG0880043427.01.T01:CDS 45.0%
GAGCAATGGTTGAGAGACTA+TGG + Chr8:24641244-24641263 MsG0880043427.01.T01:CDS 45.0%
GATCAAACCTAGCTTCAACC+TGG - Chr8:24642236-24642255 None:intergenic 45.0%
GCGACAGAGACAACAATACT+AGG - Chr8:24641127-24641146 None:intergenic 45.0%
GGCCATTCAGATTGGAGATA+TGG + Chr8:24641327-24641346 MsG0880043427.01.T01:CDS 45.0%
GTGACCATGTTGGTCAAATG+TGG + Chr8:24642207-24642226 MsG0880043427.01.T01:CDS 45.0%
TGAAGCTAGGTTTGATCCTG+TGG + Chr8:24642239-24642258 MsG0880043427.01.T01:CDS 45.0%
! ACCAGTGTTGGACATGATGT+GGG + Chr8:24642035-24642054 MsG0880043427.01.T01:CDS 45.0%
! TACCAGTGTTGGACATGATG+TGG + Chr8:24642034-24642053 MsG0880043427.01.T01:CDS 45.0%
!! ATAACCGCACTAGCTCTAGT+AGG - Chr8:24642290-24642309 None:intergenic 45.0%
!! TAACCGCACTAGCTCTAGTA+GGG - Chr8:24642289-24642308 None:intergenic 45.0%
!! TGACTTGTTTGGATGTGCGA+TGG + Chr8:24641537-24641556 MsG0880043427.01.T01:intron 45.0%
AAAGGACGGCCTCGGAAATA+AGG + Chr8:24641410-24641429 MsG0880043427.01.T01:CDS 50.0%
ACACTGGTAAGGGCAAAGTC+TGG - Chr8:24642023-24642042 None:intergenic 50.0%
CAATATCGGTAAACGCGCCA+CGG - Chr8:24641017-24641036 None:intergenic 50.0%
CGAATCCTGATGGAGAGCAA+TGG + Chr8:24641230-24641249 MsG0880043427.01.T01:CDS 50.0%
CTCAACCATTGCTCTCCATC+AGG - Chr8:24641238-24641257 None:intergenic 50.0%
GACCCCACATTTGACCAACA+TGG - Chr8:24642214-24642233 None:intergenic 50.0%
GACTTTGCCCTTACCAGTGT+TGG + Chr8:24642023-24642042 MsG0880043427.01.T01:CDS 50.0%
GGCACTGCACAACCAAACAT+AGG + Chr8:24641672-24641691 MsG0880043427.01.T01:intron 50.0%
TGACCCTACTAGAGCTAGTG+CGG + Chr8:24642283-24642302 MsG0880043427.01.T01:CDS 50.0%
TGTCTCTGTCGCCTTTCGTT+GGG + Chr8:24641135-24641154 MsG0880043427.01.T01:CDS 50.0%
TTATGGGTACCAGCATCAGC+CGG - Chr8:24641076-24641095 None:intergenic 50.0%
TTGTCTCTGTCGCCTTTCGT+TGG + Chr8:24641134-24641153 MsG0880043427.01.T01:CDS 50.0%
! CTGGTCCGTTGCAAACCTTT+TGG - Chr8:24642004-24642023 None:intergenic 50.0%
! GCCACGGTATTGTCGTTTGA+TGG - Chr8:24641001-24641020 None:intergenic 50.0%
! TGGGTATGGTGGAGACATCA+TGG + Chr8:24642164-24642183 MsG0880043427.01.T01:CDS 50.0%
!! TTGAGGGTGTCTTGTAGGCA+CGG - Chr8:24640871-24640890 None:intergenic 50.0%
ACCTTCACCGGGGGTTTCTA+CGG + Chr8:24640907-24640926 MsG0880043427.01.T01:CDS 55.0%
AGAAACCCCCGGTGAAGGTT+CGG - Chr8:24640906-24640925 None:intergenic 55.0%
CGGGGACAAATCGTGACCAT+AGG + Chr8:24642073-24642092 MsG0880043427.01.T01:CDS 55.0%
GAGACTATGGTGACCCATCG+AGG + Chr8:24641257-24641276 MsG0880043427.01.T01:CDS 55.0%
GCCCACATCATGTCCAACAC+TGG - Chr8:24642039-24642058 None:intergenic 55.0%
GTTGGACATGATGTGGGCCA+TGG + Chr8:24642041-24642060 MsG0880043427.01.T01:CDS 55.0%
GTTGGTCAAATGTGGGGTCC+AGG + Chr8:24642215-24642234 MsG0880043427.01.T01:CDS 55.0%
TATGGGTACCAGCATCAGCC+GGG - Chr8:24641075-24641094 None:intergenic 55.0%
TGGAGAGAAAAGGACGGCCT+CGG + Chr8:24641402-24641421 MsG0880043427.01.T01:CDS 55.0%
TGGTCACGATTTGTCCCCGT+AGG - Chr8:24642072-24642091 None:intergenic 55.0%
TGGTTGGGTCATCCTAAGCC+CGG + Chr8:24641054-24641073 MsG0880043427.01.T01:CDS 55.0%
TGTCCGGGTAACCTAGTCTC+TGG - Chr8:24641163-24641182 None:intergenic 55.0%
TTGGACACCGTAGAAACCCC+CGG - Chr8:24640917-24640936 None:intergenic 55.0%
!! GTCGGTTGAGGGTGTCTTGT+AGG - Chr8:24640876-24640895 None:intergenic 55.0%
AAACCCCCGGTGAAGGTTCG+GGG - Chr8:24640904-24640923 None:intergenic 60.0%
ACCGTAGAAACCCCCGGTGA+AGG - Chr8:24640911-24640930 None:intergenic 60.0%
AGTCTCTGGCGCCCAACGAA+AGG - Chr8:24641149-24641168 None:intergenic 60.0%
ATCCTAAGCCCGGCTGATGC+TGG + Chr8:24641064-24641083 MsG0880043427.01.T01:CDS 60.0%
GAAACCCCCGGTGAAGGTTC+GGG - Chr8:24640905-24640924 None:intergenic 60.0%
GCGCCAGAGACTAGGTTACC+CGG + Chr8:24641157-24641176 MsG0880043427.01.T01:CDS 60.0%
TACCAGCATCAGCCGGGCTT+AGG - Chr8:24641069-24641088 None:intergenic 60.0%
TGAAGGTTCGGGGTTCGCGT+CGG - Chr8:24640894-24640913 None:intergenic 60.0%
TGTCCCCGTAGGCAAAGCCA+TGG - Chr8:24642061-24642080 None:intergenic 60.0%
TTCGTTGGGCGCCAGAGACT+AGG + Chr8:24641149-24641168 MsG0880043427.01.T01:CDS 60.0%
! AGGGTGTCTTGTAGGCACGG+TGG - Chr8:24640868-24640887 None:intergenic 60.0%
! GTGGGCCATGGCTTTGCCTA+CGG + Chr8:24642053-24642072 MsG0880043427.01.T01:CDS 60.0%
! GTGGGGTCCAGGTTGAAGCT+AGG + Chr8:24642226-24642245 MsG0880043427.01.T01:CDS 60.0%
! TGGGCCATGGCTTTGCCTAC+GGG + Chr8:24642054-24642073 MsG0880043427.01.T01:CDS 60.0%
CGAACCCCGAACCTTCACCG+GGG + Chr8:24640897-24640916 MsG0880043427.01.T01:CDS 65.0%
CGCGAACCCCGAACCTTCAC+CGG + Chr8:24640895-24640914 MsG0880043427.01.T01:CDS 65.0%
GAACCCCGAACCTTCACCGG+GGG + Chr8:24640898-24640917 MsG0880043427.01.T01:CDS 65.0%
GCACGGTGGAGAGTTCCGTC+AGG - Chr8:24640854-24640873 None:intergenic 65.0%
GCGAACCCCGAACCTTCACC+GGG + Chr8:24640896-24640915 MsG0880043427.01.T01:CDS 65.0%
! GGGCCATGGCTTTGCCTACG+GGG + Chr8:24642055-24642074 MsG0880043427.01.T01:CDS 65.0%
!! TCGGGGTTCGCGTCGGTTGA+GGG - Chr8:24640887-24640906 None:intergenic 65.0%
!! TTCGGGGTTCGCGTCGGTTG+AGG - Chr8:24640888-24640907 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 24640806 24642311 24640806 ID=MsG0880043427.01;Name=MsG0880043427.01
Chr8 mRNA 24640806 24642311 24640806 ID=MsG0880043427.01.T01;Parent=MsG0880043427.01;Name=MsG0880043427.01.T01;_AED=0.25;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|309
Chr8 exon 24640806 24641431 24640806 ID=MsG0880043427.01.T01:exon:9137;Parent=MsG0880043427.01.T01
Chr8 exon 24642008 24642311 24642008 ID=MsG0880043427.01.T01:exon:9138;Parent=MsG0880043427.01.T01
Chr8 CDS 24640806 24641431 24640806 ID=MsG0880043427.01.T01:cds;Parent=MsG0880043427.01.T01
Chr8 CDS 24642008 24642311 24642008 ID=MsG0880043427.01.T01:cds;Parent=MsG0880043427.01.T01
Gene Sequence

>MsG0880043427.01.T01

ATGTCAAAATTTGATCCATATAACCACTTTGGATTGAGTTTCAATCCTGACGGAACTCTCCACCGTGCCTACAAGACACCCTCAACCGACGCGAACCCCGAACCTTCACCGGGGGTTTCTACGGTGTCCAAAGACATAACAATTGATGATGAGAAAAAAATATGGGTTCGAATTTTCAGGCCAACAAAACTACCATCAAACGACAATACCGTGGCGCGTTTACCGATATTGATTTACTTTCATAATGGTGGTTGGGTCATCCTAAGCCCGGCTGATGCTGGTACCCATAAAAAATGTTCGAATCTTGCTTCTGACATTCCTAGTATTGTTGTCTCTGTCGCCTTTCGTTGGGCGCCAGAGACTAGGTTACCCGGACAATATCAAGATGCTCGAGATGCTATTTTGTGGGTGAAAAATCAAATGACGAATCCTGATGGAGAGCAATGGTTGAGAGACTATGGTGACCCATCGAGGTGTTATCTTTATGGATGTGGTTGTGGTGCAAACATTGTGTTCAATACGGCCATTCAGATTGGAGATATGGACTTAGAGCCTCTAAGGATTAGTGGCCTTGTTATGAATCAACCTATGTTTTCTGGAGAGAAAAGGACGGCCTCGGAAATAAGGTTTGCAACGGACCAGACTTTGCCCTTACCAGTGTTGGACATGATGTGGGCCATGGCTTTGCCTACGGGGACAAATCGTGACCATAGGTATTGCAATCCAATGGCAAAAGGACCACATTTGGAAAATGTCAAGAAATTAGGGAGGTGTCTTGTTATTGGGTATGGTGGAGACATCATGGTTGATCGACAACAAGAATTTGTGACCATGTTGGTCAAATGTGGGGTCCAGGTTGAAGCTAGGTTTGATCCTGTGGGTTCCACAATATTGATATGGTTGACCCTACTAGAGCTAGTGCGGTTATAA

Protein sequence

>MsG0880043427.01.T01

MSKFDPYNHFGLSFNPDGTLHRAYKTPSTDANPEPSPGVSTVSKDITIDDEKKIWVRIFRPTKLPSNDNTVARLPILIYFHNGGWVILSPADAGTHKKCSNLASDIPSIVVSVAFRWAPETRLPGQYQDARDAILWVKNQMTNPDGEQWLRDYGDPSRCYLYGCGCGANIVFNTAIQIGDMDLEPLRISGLVMNQPMFSGEKRTASEIRFATDQTLPLPVLDMMWAMALPTGTNRDHRYCNPMAKGPHLENVKKLGRCLVIGYGGDIMVDRQQEFVTMLVKCGVQVEARFDPVGSTILIWLTLLELVRL*