Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043427.01.T01 | XP_003627646.1 | 96.259 | 294 | 11 | 0 | 1 | 294 | 1 | 294 | 0 | 603 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043427.01.T01 | O64641 | 52.397 | 292 | 138 | 1 | 4 | 294 | 9 | 300 | 4.85E-111 | 327 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043427.01.T01 | G7LCQ5 | 96.259 | 294 | 11 | 0 | 1 | 294 | 1 | 294 | 0.0 | 603 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0880043427.01 | MsG0680033953.01 | PPI |
MsG0880043427.01 | MsG0680033952.01 | PPI |
MsG0680033951.01 | MsG0880043427.01 | PPI |
MsG0880043427.01 | MsG0180005648.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043427.01.T01 | MTR_8g035500 | 96.259 | 294 | 11 | 0 | 1 | 294 | 1 | 294 | 0.0 | 603 |
MsG0880043427.01.T01 | MTR_8g035540 | 42.517 | 294 | 163 | 4 | 5 | 294 | 2 | 293 | 4.68e-84 | 256 |
MsG0880043427.01.T01 | MTR_8g035520 | 42.955 | 291 | 160 | 4 | 2 | 290 | 11 | 297 | 1.88e-81 | 249 |
MsG0880043427.01.T01 | MTR_6g464510 | 39.865 | 296 | 164 | 5 | 5 | 294 | 16 | 303 | 1.04e-76 | 238 |
MsG0880043427.01.T01 | MTR_1g102170 | 39.116 | 294 | 164 | 5 | 2 | 290 | 28 | 311 | 3.52e-69 | 219 |
MsG0880043427.01.T01 | MTR_1g102160 | 38.667 | 300 | 167 | 6 | 4 | 294 | 11 | 302 | 3.72e-68 | 216 |
MsG0880043427.01.T01 | MTR_6g464280 | 37.037 | 297 | 173 | 5 | 5 | 294 | 12 | 301 | 5.94e-67 | 213 |
MsG0880043427.01.T01 | MTR_6g464120 | 39.310 | 290 | 164 | 6 | 5 | 290 | 17 | 298 | 1.12e-65 | 215 |
MsG0880043427.01.T01 | MTR_6g464320 | 35.690 | 297 | 177 | 6 | 5 | 294 | 13 | 302 | 1.95e-64 | 206 |
MsG0880043427.01.T01 | MTR_0007s0520 | 36.140 | 285 | 163 | 7 | 15 | 290 | 24 | 298 | 2.17e-59 | 193 |
MsG0880043427.01.T01 | MTR_7g406880 | 34.375 | 288 | 175 | 5 | 12 | 287 | 29 | 314 | 2.45e-52 | 176 |
MsG0880043427.01.T01 | MTR_6g065110 | 35.206 | 267 | 154 | 6 | 29 | 287 | 48 | 303 | 2.12e-46 | 160 |
MsG0880043427.01.T01 | MTR_6g065270 | 32.414 | 290 | 176 | 5 | 10 | 287 | 23 | 304 | 3.62e-44 | 154 |
MsG0880043427.01.T01 | MTR_1g111280 | 32.550 | 298 | 180 | 9 | 12 | 299 | 34 | 320 | 3.93e-44 | 154 |
MsG0880043427.01.T01 | MTR_6g065120 | 33.333 | 282 | 167 | 7 | 17 | 287 | 33 | 304 | 3.06e-43 | 151 |
MsG0880043427.01.T01 | MTR_6g065400 | 31.930 | 285 | 174 | 6 | 13 | 287 | 28 | 302 | 1.89e-41 | 147 |
MsG0880043427.01.T01 | MTR_6g065370 | 31.317 | 281 | 173 | 6 | 17 | 287 | 32 | 302 | 2.79e-41 | 146 |
MsG0880043427.01.T01 | MTR_7g107040 | 32.394 | 284 | 170 | 8 | 12 | 287 | 15 | 284 | 5.73e-40 | 142 |
MsG0880043427.01.T01 | MTR_6g065430 | 33.213 | 277 | 168 | 7 | 17 | 287 | 31 | 296 | 9.04e-39 | 139 |
MsG0880043427.01.T01 | MTR_6g065340 | 31.560 | 282 | 155 | 8 | 17 | 287 | 43 | 297 | 1.95e-36 | 133 |
MsG0880043427.01.T01 | MTR_4g050140 | 29.839 | 248 | 164 | 4 | 44 | 287 | 42 | 283 | 7.05e-36 | 131 |
MsG0880043427.01.T01 | MTR_4g086510 | 31.621 | 253 | 163 | 4 | 33 | 283 | 35 | 279 | 3.46e-35 | 130 |
MsG0880043427.01.T01 | MTR_1g082210 | 31.561 | 301 | 175 | 9 | 8 | 290 | 25 | 312 | 1.18e-33 | 126 |
MsG0880043427.01.T01 | MTR_3g012440 | 31.760 | 233 | 154 | 3 | 56 | 287 | 73 | 301 | 5.25e-32 | 122 |
MsG0880043427.01.T01 | MTR_7g056207 | 31.557 | 244 | 155 | 5 | 43 | 283 | 77 | 311 | 6.55e-32 | 122 |
MsG0880043427.01.T01 | MTR_4g086480 | 31.225 | 253 | 161 | 5 | 33 | 283 | 39 | 280 | 1.72e-31 | 120 |
MsG0880043427.01.T01 | MTR_3g101420 | 29.893 | 281 | 169 | 9 | 12 | 283 | 15 | 276 | 4.14e-31 | 119 |
MsG0880043427.01.T01 | MTR_7g093950 | 29.470 | 302 | 180 | 9 | 8 | 287 | 25 | 315 | 4.53e-31 | 119 |
MsG0880043427.01.T01 | MTR_4g086470 | 31.621 | 253 | 160 | 5 | 33 | 283 | 38 | 279 | 2.09e-30 | 117 |
MsG0880043427.01.T01 | MTR_1g089310 | 31.164 | 292 | 166 | 10 | 8 | 279 | 25 | 301 | 2.71e-30 | 117 |
MsG0880043427.01.T01 | MTR_1g089310 | 31.164 | 292 | 166 | 10 | 8 | 279 | 41 | 317 | 3.47e-30 | 117 |
MsG0880043427.01.T01 | MTR_5g005920 | 29.537 | 281 | 184 | 9 | 17 | 290 | 26 | 299 | 4.46e-29 | 114 |
MsG0880043427.01.T01 | MTR_0007s0480 | 39.161 | 143 | 78 | 3 | 157 | 290 | 2 | 144 | 5.54e-29 | 109 |
MsG0880043427.01.T01 | MTR_1g012430 | 34.199 | 231 | 128 | 7 | 17 | 241 | 16 | 228 | 2.24e-27 | 108 |
MsG0880043427.01.T01 | MTR_4g086540 | 32.620 | 187 | 115 | 3 | 17 | 203 | 31 | 206 | 2.25e-26 | 106 |
MsG0880043427.01.T01 | MTR_1g105020 | 32.117 | 274 | 169 | 10 | 17 | 283 | 21 | 284 | 9.62e-26 | 104 |
MsG0880043427.01.T01 | MTR_5g005900 | 29.545 | 264 | 168 | 8 | 17 | 271 | 22 | 276 | 3.38e-25 | 103 |
MsG0880043427.01.T01 | MTR_5g005850 | 33.058 | 242 | 136 | 10 | 17 | 246 | 26 | 253 | 2.20e-24 | 101 |
MsG0880043427.01.T01 | MTR_3g450680 | 31.579 | 266 | 158 | 10 | 17 | 271 | 29 | 281 | 4.55e-24 | 100 |
MsG0880043427.01.T01 | MTR_6g022710 | 28.906 | 256 | 145 | 7 | 64 | 284 | 147 | 400 | 7.87e-24 | 101 |
MsG0880043427.01.T01 | MTR_8g040860 | 30.798 | 263 | 161 | 10 | 17 | 271 | 29 | 278 | 5.16e-23 | 97.4 |
MsG0880043427.01.T01 | MTR_7g051020 | 30.769 | 273 | 173 | 11 | 17 | 283 | 25 | 287 | 6.59e-21 | 91.7 |
MsG0880043427.01.T01 | MTR_1g104930 | 30.403 | 273 | 171 | 11 | 17 | 283 | 25 | 284 | 4.99e-20 | 89.0 |
MsG0880043427.01.T01 | MTR_1g104933 | 30.081 | 246 | 154 | 8 | 43 | 283 | 46 | 278 | 2.80e-17 | 81.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880043427.01.T01 | AT2G45610 | 52.397 | 292 | 138 | 1 | 4 | 294 | 9 | 300 | 4.95e-112 | 327 |
MsG0880043427.01.T01 | AT2G45600 | 41.196 | 301 | 149 | 8 | 5 | 294 | 9 | 292 | 2.99e-76 | 236 |
MsG0880043427.01.T01 | AT5G62180 | 37.075 | 294 | 171 | 6 | 5 | 290 | 9 | 296 | 9.77e-66 | 209 |
MsG0880043427.01.T01 | AT1G68620 | 32.567 | 261 | 163 | 6 | 17 | 275 | 36 | 285 | 4.97e-38 | 137 |
MsG0880043427.01.T01 | AT5G16080 | 31.179 | 263 | 166 | 8 | 32 | 288 | 54 | 307 | 1.45e-33 | 126 |
MsG0880043427.01.T01 | AT5G23530 | 30.292 | 274 | 169 | 8 | 16 | 283 | 34 | 291 | 2.77e-33 | 125 |
MsG0880043427.01.T01 | AT5G06570 | 33.878 | 245 | 151 | 7 | 44 | 283 | 50 | 288 | 5.15e-32 | 122 |
MsG0880043427.01.T01 | AT5G06570 | 33.878 | 245 | 151 | 7 | 44 | 283 | 50 | 288 | 5.15e-32 | 122 |
MsG0880043427.01.T01 | AT5G06570 | 33.878 | 245 | 151 | 7 | 44 | 283 | 65 | 303 | 5.42e-32 | 122 |
MsG0880043427.01.T01 | AT5G06570 | 33.878 | 245 | 151 | 7 | 44 | 283 | 65 | 303 | 5.42e-32 | 122 |
MsG0880043427.01.T01 | AT5G27320 | 29.530 | 298 | 178 | 9 | 8 | 287 | 25 | 308 | 7.84e-31 | 119 |
MsG0880043427.01.T01 | AT3G63010 | 30.104 | 289 | 168 | 9 | 16 | 286 | 37 | 309 | 8.85e-30 | 116 |
MsG0880043427.01.T01 | AT3G05120 | 29.470 | 302 | 175 | 10 | 8 | 287 | 25 | 310 | 2.49e-28 | 112 |
MsG0880043427.01.T01 | AT1G19190 | 28.947 | 266 | 166 | 7 | 26 | 283 | 25 | 275 | 2.06e-27 | 109 |
MsG0880043427.01.T01 | AT1G47480 | 28.676 | 272 | 174 | 7 | 12 | 281 | 16 | 269 | 2.61e-26 | 106 |
MsG0880043427.01.T01 | AT5G14310 | 29.688 | 256 | 143 | 5 | 65 | 284 | 142 | 396 | 5.83e-26 | 107 |
MsG0880043427.01.T01 | AT3G48690 | 28.929 | 280 | 181 | 7 | 12 | 283 | 13 | 282 | 1.14e-25 | 104 |
MsG0880043427.01.T01 | AT3G27320 | 28.897 | 263 | 149 | 6 | 58 | 284 | 118 | 378 | 3.34e-24 | 102 |
MsG0880043427.01.T01 | AT2G03550 | 28.244 | 262 | 176 | 4 | 29 | 289 | 28 | 278 | 3.68e-24 | 100 |
MsG0880043427.01.T01 | AT3G27320 | 28.897 | 263 | 149 | 6 | 58 | 284 | 150 | 410 | 4.56e-24 | 102 |
MsG0880043427.01.T01 | AT1G49640 | 31.868 | 182 | 117 | 3 | 22 | 202 | 21 | 196 | 1.09e-23 | 99.0 |
MsG0880043427.01.T01 | AT1G49650 | 32.979 | 188 | 116 | 4 | 17 | 201 | 74 | 254 | 5.23e-23 | 98.2 |
MsG0880043427.01.T01 | AT1G49660 | 27.407 | 270 | 183 | 6 | 17 | 282 | 18 | 278 | 1.03e-22 | 96.7 |
MsG0880043427.01.T01 | AT3G48700 | 27.404 | 208 | 142 | 4 | 33 | 234 | 32 | 236 | 1.99e-21 | 93.2 |
Find 103 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGAAAATGTCAAGAAATT+AGG | 0.125161 | 8:+24642126 | MsG0880043427.01.T01:CDS |
CCATCGAGGTGTTATCTTTA+TGG | 0.162050 | 8:+24641271 | MsG0880043427.01.T01:CDS |
ATCATCAATTGTTATGTCTT+TGG | 0.205110 | 8:-24640933 | None:intergenic |
CTCAATCCAAAGTGGTTATA+TGG | 0.248180 | 8:-24640821 | None:intergenic |
TTAGGGAGGTGTCTTGTTAT+TGG | 0.287339 | 8:+24642144 | MsG0880043427.01.T01:CDS |
TTCGGGGTTCGCGTCGGTTG+AGG | 0.309991 | 8:-24640885 | None:intergenic |
TGGAAAATGTCAAGAAATTA+GGG | 0.314810 | 8:+24642127 | MsG0880043427.01.T01:CDS |
AAAGGACGGCCTCGGAAATA+AGG | 0.329749 | 8:+24641410 | MsG0880043427.01.T01:CDS |
TAGGGAGGTGTCTTGTTATT+GGG | 0.337672 | 8:+24642145 | MsG0880043427.01.T01:CDS |
AATGGCAAAAGGACCACATT+TGG | 0.377354 | 8:+24642107 | MsG0880043427.01.T01:CDS |
GTCGGTTGAGGGTGTCTTGT+AGG | 0.384926 | 8:-24640873 | None:intergenic |
CGCGAACCCCGAACCTTCAC+CGG | 0.388207 | 8:+24640895 | MsG0880043427.01.T01:CDS |
ATATTGATTTACTTTCATAA+TGG | 0.392883 | 8:+24641031 | MsG0880043427.01.T01:CDS |
ATATGGACTTAGAGCCTCTA+AGG | 0.394329 | 8:+24641344 | MsG0880043427.01.T01:CDS |
TCGGGGTTCGCGTCGGTTGA+GGG | 0.394609 | 8:-24640884 | None:intergenic |
GGCCATTCAGATTGGAGATA+TGG | 0.409202 | 8:+24641327 | MsG0880043427.01.T01:CDS |
TGGGCCATGGCTTTGCCTAC+GGG | 0.409884 | 8:+24642054 | MsG0880043427.01.T01:CDS |
ACAAGGCCACTAATCCTTAG+AGG | 0.416771 | 8:-24641358 | None:intergenic |
GACTTTGCCCTTACCAGTGT+TGG | 0.417668 | 8:+24642023 | MsG0880043427.01.T01:CDS |
TTCAATACGGCCATTCAGAT+TGG | 0.423842 | 8:+24641319 | MsG0880043427.01.T01:CDS |
TTACTTTCATAATGGTGGTT+GGG | 0.428229 | 8:+24641039 | MsG0880043427.01.T01:CDS |
GTGGGCCATGGCTTTGCCTA+CGG | 0.428532 | 8:+24642053 | MsG0880043427.01.T01:CDS |
ATAACCGCACTAGCTCTAGT+AGG | 0.431582 | 8:-24642287 | None:intergenic |
TTTACTTTCATAATGGTGGT+TGG | 0.431824 | 8:+24641038 | MsG0880043427.01.T01:CDS |
TTTGATCCATATAACCACTT+TGG | 0.433703 | 8:+24640815 | MsG0880043427.01.T01:CDS |
AGGTGTCTTGTTATTGGGTA+TGG | 0.434253 | 8:+24642150 | MsG0880043427.01.T01:CDS |
TATCTTTATGGATGTGGTTG+TGG | 0.434607 | 8:+24641283 | MsG0880043427.01.T01:CDS |
TGTCTCTGTCGCCTTTCGTT+GGG | 0.438448 | 8:+24641135 | MsG0880043427.01.T01:CDS |
CTCAACCATTGCTCTCCATC+AGG | 0.438600 | 8:-24641235 | None:intergenic |
TTATGAAAGTAAATCAATAT+CGG | 0.442305 | 8:-24641028 | None:intergenic |
TCGAGCATCTTGATATTGTC+CGG | 0.444661 | 8:-24641176 | None:intergenic |
ATCCTAAGCCCGGCTGATGC+TGG | 0.450512 | 8:+24641064 | MsG0880043427.01.T01:CDS |
TTGTCTCTGTCGCCTTTCGT+TGG | 0.451494 | 8:+24641134 | MsG0880043427.01.T01:CDS |
CCATTGGATTGCAATACCTA+TGG | 0.454707 | 8:-24642089 | None:intergenic |
TGAAGCTAGGTTTGATCCTG+TGG | 0.455072 | 8:+24642239 | MsG0880043427.01.T01:CDS |
TGGGTTCCACAATATTGATA+TGG | 0.461340 | 8:+24642259 | MsG0880043427.01.T01:CDS |
TTAGAGCCTCTAAGGATTAG+TGG | 0.468499 | 8:+24641352 | MsG0880043427.01.T01:CDS |
GCCACGGTATTGTCGTTTGA+TGG | 0.470251 | 8:-24640998 | None:intergenic |
TTATGGGTACCAGCATCAGC+CGG | 0.476238 | 8:-24641073 | None:intergenic |
TACCAGCATCAGCCGGGCTT+AGG | 0.478525 | 8:-24641066 | None:intergenic |
GCGACAGAGACAACAATACT+AGG | 0.481339 | 8:-24641124 | None:intergenic |
GAGCAATGGTTGAGAGACTA+TGG | 0.482302 | 8:+24641244 | MsG0880043427.01.T01:CDS |
GCGAACCCCGAACCTTCACC+GGG | 0.488799 | 8:+24640896 | MsG0880043427.01.T01:CDS |
CATCATGTCCAACACTGGTA+AGG | 0.489057 | 8:-24642031 | None:intergenic |
AGGTGTTATCTTTATGGATG+TGG | 0.490354 | 8:+24641277 | MsG0880043427.01.T01:CDS |
GTTGGTCAAATGTGGGGTCC+AGG | 0.492083 | 8:+24642215 | MsG0880043427.01.T01:CDS |
TGGAGAGAAAAGGACGGCCT+CGG | 0.492416 | 8:+24641402 | MsG0880043427.01.T01:CDS |
TTCGTTGGGCGCCAGAGACT+AGG | 0.511728 | 8:+24641149 | MsG0880043427.01.T01:CDS |
TTGATTTACTTTCATAATGG+TGG | 0.512216 | 8:+24641034 | MsG0880043427.01.T01:CDS |
TGTCTTGTTATTGGGTATGG+TGG | 0.512697 | 8:+24642153 | MsG0880043427.01.T01:CDS |
TGACCATGTTGGTCAAATGT+GGG | 0.525547 | 8:+24642208 | MsG0880043427.01.T01:CDS |
AATTATGAACCTTATTTCCG+AGG | 0.528856 | 8:-24641419 | None:intergenic |
TATTGCAATCCAATGGCAAA+AGG | 0.529808 | 8:+24642096 | MsG0880043427.01.T01:CDS |
ACACTGGTAAGGGCAAAGTC+TGG | 0.531768 | 8:-24642020 | None:intergenic |
ATCAATATTGTGGAACCCAC+AGG | 0.532361 | 8:-24642255 | None:intergenic |
GTGACCATGTTGGTCAAATG+TGG | 0.535257 | 8:+24642207 | MsG0880043427.01.T01:CDS |
TTCTTCCAAAAGGTTTGCAA+CGG | 0.535946 | 8:+24641996 | MsG0880043427.01.T01:intron |
TATGGGTACCAGCATCAGCC+GGG | 0.538444 | 8:-24641072 | None:intergenic |
GAAGCTAGGTTTGATCCTGT+GGG | 0.539393 | 8:+24642240 | MsG0880043427.01.T01:CDS |
AATCAAATGACGAATCCTGA+TGG | 0.539467 | 8:+24641220 | MsG0880043427.01.T01:CDS |
GTCCATATCTCCAATCTGAA+TGG | 0.540037 | 8:-24641329 | None:intergenic |
TGTCCGGGTAACCTAGTCTC+TGG | 0.551902 | 8:-24641160 | None:intergenic |
TTGAGGGTGTCTTGTAGGCA+CGG | 0.553474 | 8:-24640868 | None:intergenic |
TACCAGTGTTGGACATGATG+TGG | 0.554021 | 8:+24642034 | MsG0880043427.01.T01:CDS |
TGGGTATGGTGGAGACATCA+TGG | 0.554451 | 8:+24642164 | MsG0880043427.01.T01:CDS |
GTTGGACATGATGTGGGCCA+TGG | 0.554890 | 8:+24642041 | MsG0880043427.01.T01:CDS |
GGTCAACCATATCAATATTG+TGG | 0.557103 | 8:-24642265 | None:intergenic |
GTGGGGTCCAGGTTGAAGCT+AGG | 0.557168 | 8:+24642226 | MsG0880043427.01.T01:CDS |
CATAAAGATAACACCTCGAT+GGG | 0.558427 | 8:-24641270 | None:intergenic |
TGCAAACATTGTGTTCAATA+CGG | 0.560159 | 8:+24641306 | MsG0880043427.01.T01:CDS |
CAATATCGGTAAACGCGCCA+CGG | 0.563423 | 8:-24641014 | None:intergenic |
GGATTGAGTTTCAATCCTGA+CGG | 0.564876 | 8:+24640836 | MsG0880043427.01.T01:CDS |
TGAAGGTTCGGGGTTCGCGT+CGG | 0.566328 | 8:-24640891 | None:intergenic |
AGTCTCTGGCGCCCAACGAA+AGG | 0.566700 | 8:-24641146 | None:intergenic |
CGAGCATCTTGATATTGTCC+GGG | 0.569073 | 8:-24641175 | None:intergenic |
GCACGGTGGAGAGTTCCGTC+AGG | 0.576931 | 8:-24640851 | None:intergenic |
TAACCGCACTAGCTCTAGTA+GGG | 0.577127 | 8:-24642286 | None:intergenic |
TGGTTGGGTCATCCTAAGCC+CGG | 0.577877 | 8:+24641054 | MsG0880043427.01.T01:CDS |
ATCATGTCCAACACTGGTAA+GGG | 0.578520 | 8:-24642030 | None:intergenic |
CCATAAAGATAACACCTCGA+TGG | 0.586600 | 8:-24641271 | None:intergenic |
GCCCACATCATGTCCAACAC+TGG | 0.603571 | 8:-24642036 | None:intergenic |
GCGCCAGAGACTAGGTTACC+CGG | 0.604483 | 8:+24641157 | MsG0880043427.01.T01:CDS |
GGGCCATGGCTTTGCCTACG+GGG | 0.610243 | 8:+24642055 | MsG0880043427.01.T01:CDS |
CGGGGACAAATCGTGACCAT+AGG | 0.613124 | 8:+24642073 | MsG0880043427.01.T01:CDS |
CCATAGGTATTGCAATCCAA+TGG | 0.617062 | 8:+24642089 | MsG0880043427.01.T01:CDS |
ACATAGGTTGATTCATAACA+AGG | 0.617116 | 8:-24641375 | None:intergenic |
GATCAAACCTAGCTTCAACC+TGG | 0.619274 | 8:-24642233 | None:intergenic |
GAACCCCGAACCTTCACCGG+GGG | 0.629310 | 8:+24640898 | MsG0880043427.01.T01:CDS |
ACCAGTGTTGGACATGATGT+GGG | 0.635087 | 8:+24642035 | MsG0880043427.01.T01:CDS |
ACAAGAATTTGTGACCATGT+TGG | 0.638031 | 8:+24642197 | MsG0880043427.01.T01:CDS |
TTGGACACCGTAGAAACCCC+CGG | 0.639060 | 8:-24640914 | None:intergenic |
GATTGAAACTCAATCCAAAG+TGG | 0.656440 | 8:-24640829 | None:intergenic |
TGTCCCCGTAGGCAAAGCCA+TGG | 0.658805 | 8:-24642058 | None:intergenic |
GACCATGTTGGTCAAATGTG+GGG | 0.660571 | 8:+24642209 | MsG0880043427.01.T01:CDS |
TGACCCTACTAGAGCTAGTG+CGG | 0.675155 | 8:+24642283 | MsG0880043427.01.T01:CDS |
TGGTCACGATTTGTCCCCGT+AGG | 0.679424 | 8:-24642069 | None:intergenic |
AAAATGTCAAGAAATTAGGG+AGG | 0.680447 | 8:+24642130 | MsG0880043427.01.T01:CDS |
CGAATCCTGATGGAGAGCAA+TGG | 0.687815 | 8:+24641230 | MsG0880043427.01.T01:CDS |
GACCCCACATTTGACCAACA+TGG | 0.691227 | 8:-24642211 | None:intergenic |
GAGACTATGGTGACCCATCG+AGG | 0.705564 | 8:+24641257 | MsG0880043427.01.T01:CDS |
ACCATCAAACGACAATACCG+TGG | 0.707154 | 8:+24640997 | MsG0880043427.01.T01:CDS |
AGGGTGTCTTGTAGGCACGG+TGG | 0.724739 | 8:-24640865 | None:intergenic |
CGAACCCCGAACCTTCACCG+GGG | 0.774672 | 8:+24640897 | MsG0880043427.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAAATTTCAAACATCTATA+AGG | - | Chr8:24641833-24641852 | None:intergenic | 15.0% |
!! | TTATGAAAGTAAATCAATAT+CGG | - | Chr8:24641031-24641050 | None:intergenic | 15.0% |
!!! | ATATTGATTTACTTTCATAA+TGG | + | Chr8:24641031-24641050 | MsG0880043427.01.T01:CDS | 15.0% |
!!! | ATTTCATTTTAGTTTTATAG+AGG | + | Chr8:24641771-24641790 | MsG0880043427.01.T01:intron | 15.0% |
!!! | AAAATATATCTTGACTTGTT+TGG | + | Chr8:24641526-24641545 | MsG0880043427.01.T01:intron | 20.0% |
!!! | AAGATTCGAACATTTTTTAT+GGG | - | Chr8:24641092-24641111 | None:intergenic | 20.0% |
!!! | TGATGATGAGAAAAAAATAT+GGG | + | Chr8:24640949-24640968 | MsG0880043427.01.T01:CDS | 20.0% |
!!! | TTGATGATGAGAAAAAAATA+TGG | + | Chr8:24640948-24640967 | MsG0880043427.01.T01:CDS | 20.0% |
! | AATTTCAAACATCTATAAGG+TGG | - | Chr8:24641830-24641849 | None:intergenic | 25.0% |
! | ATCATCAATTGTTATGTCTT+TGG | - | Chr8:24640936-24640955 | None:intergenic | 25.0% |
! | CAAAATTACTCATTATCATG+TGG | + | Chr8:24641914-24641933 | MsG0880043427.01.T01:intron | 25.0% |
! | TGGAAAATGTCAAGAAATTA+GGG | + | Chr8:24642127-24642146 | MsG0880043427.01.T01:CDS | 25.0% |
! | TTGATTTACTTTCATAATGG+TGG | + | Chr8:24641034-24641053 | MsG0880043427.01.T01:CDS | 25.0% |
! | TTGGAAAATGTCAAGAAATT+AGG | + | Chr8:24642126-24642145 | MsG0880043427.01.T01:CDS | 25.0% |
!! | TTTCTTTCTTTTCTTCCAAA+AGG | + | Chr8:24641986-24642005 | MsG0880043427.01.T01:intron | 25.0% |
!!! | CAAGATTCGAACATTTTTTA+TGG | - | Chr8:24641093-24641112 | None:intergenic | 25.0% |
AAAATGTCAAGAAATTAGGG+AGG | + | Chr8:24642130-24642149 | MsG0880043427.01.T01:CDS | 30.0% | |
GTCTTGATTCAAAGAGATTA+AGG | - | Chr8:24641895-24641914 | None:intergenic | 30.0% | |
GTGGTTTCTAATACAATAAG+AGG | - | Chr8:24641811-24641830 | None:intergenic | 30.0% | |
TGAGAATACACATATCTCTT+TGG | + | Chr8:24641496-24641515 | MsG0880043427.01.T01:intron | 30.0% | |
TGCAAACATTGTGTTCAATA+CGG | + | Chr8:24641306-24641325 | MsG0880043427.01.T01:CDS | 30.0% | |
TTACTTTCATAATGGTGGTT+GGG | + | Chr8:24641039-24641058 | MsG0880043427.01.T01:CDS | 30.0% | |
TTGATTCAAAGAGATTAAGG+TGG | - | Chr8:24641892-24641911 | None:intergenic | 30.0% | |
TTTACTTTCATAATGGTGGT+TGG | + | Chr8:24641038-24641057 | MsG0880043427.01.T01:CDS | 30.0% | |
TTTGATCCATATAACCACTT+TGG | + | Chr8:24640815-24640834 | MsG0880043427.01.T01:CDS | 30.0% | |
! | AAATATGGGTTCGAATTTTC+AGG | + | Chr8:24640963-24640982 | MsG0880043427.01.T01:CDS | 30.0% |
! | AATTATGAACCTTATTTCCG+AGG | - | Chr8:24641422-24641441 | None:intergenic | 30.0% |
! | ATGAATCAACCTATGTTTTC+TGG | + | Chr8:24641382-24641401 | MsG0880043427.01.T01:CDS | 30.0% |
! | GTAAGTTCCTGCTATAATTT+TGG | + | Chr8:24641635-24641654 | MsG0880043427.01.T01:intron | 30.0% |
! | TAAATGATGATGCCTATGTT+TGG | - | Chr8:24641687-24641706 | None:intergenic | 30.0% |
! | TTCTTGACATTTTCCAAATG+TGG | - | Chr8:24642123-24642142 | None:intergenic | 30.0% |
! | TTTAAAGCCAAACCAAACAT+TGG | + | Chr8:24641849-24641868 | MsG0880043427.01.T01:intron | 30.0% |
!! | ACATAGGTTGATTCATAACA+AGG | - | Chr8:24641378-24641397 | None:intergenic | 30.0% |
AATCAAATGACGAATCCTGA+TGG | + | Chr8:24641220-24641239 | MsG0880043427.01.T01:CDS | 35.0% | |
ACAAGAATTTGTGACCATGT+TGG | + | Chr8:24642197-24642216 | MsG0880043427.01.T01:CDS | 35.0% | |
CATAAAGATAACACCTCGAT+GGG | - | Chr8:24641273-24641292 | None:intergenic | 35.0% | |
CATCAAGCCAAAATTATAGC+AGG | - | Chr8:24641645-24641664 | None:intergenic | 35.0% | |
CTCAATCCAAAGTGGTTATA+TGG | - | Chr8:24640824-24640843 | None:intergenic | 35.0% | |
GAGAAATCAAGAGACAAATG+AGG | - | Chr8:24641728-24641747 | None:intergenic | 35.0% | |
GATTGAAACTCAATCCAAAG+TGG | - | Chr8:24640832-24640851 | None:intergenic | 35.0% | |
GGTCAACCATATCAATATTG+TGG | - | Chr8:24642268-24642287 | None:intergenic | 35.0% | |
TATCTTTATGGATGTGGTTG+TGG | + | Chr8:24641283-24641302 | MsG0880043427.01.T01:CDS | 35.0% | |
TATTGCAATCCAATGGCAAA+AGG | + | Chr8:24642096-24642115 | MsG0880043427.01.T01:CDS | 35.0% | |
TGGGTTCCACAATATTGATA+TGG | + | Chr8:24642259-24642278 | MsG0880043427.01.T01:CDS | 35.0% | |
TGTTGATCCAATGTTTGGTT+TGG | - | Chr8:24641859-24641878 | None:intergenic | 35.0% | |
TTCTTCCAAAAGGTTTGCAA+CGG | + | Chr8:24641996-24642015 | MsG0880043427.01.T01:intron | 35.0% | |
! | AGGTGTTATCTTTATGGATG+TGG | + | Chr8:24641277-24641296 | MsG0880043427.01.T01:CDS | 35.0% |
! | CTTTTCTCTCCAGAAAACAT+AGG | - | Chr8:24641394-24641413 | None:intergenic | 35.0% |
!! | AGTCTTGTTGATCCAATGTT+TGG | - | Chr8:24641864-24641883 | None:intergenic | 35.0% |
!! | CTATGTTTTCTGGAGAGAAA+AGG | + | Chr8:24641392-24641411 | MsG0880043427.01.T01:CDS | 35.0% |
!!! | ATTTTGGCTTGATGTGGAAA+TGG | + | Chr8:24641651-24641670 | MsG0880043427.01.T01:intron | 35.0% |
!!! | GCTATAATTTTGGCTTGATG+TGG | + | Chr8:24641645-24641664 | MsG0880043427.01.T01:intron | 35.0% |
!!! | TCGTTTGATGGTAGTTTTGT+TGG | - | Chr8:24640989-24641008 | None:intergenic | 35.0% |
AATGGCAAAAGGACCACATT+TGG | + | Chr8:24642107-24642126 | MsG0880043427.01.T01:CDS | 40.0% | |
ATATGGACTTAGAGCCTCTA+AGG | + | Chr8:24641344-24641363 | MsG0880043427.01.T01:CDS | 40.0% | |
ATCAATATTGTGGAACCCAC+AGG | - | Chr8:24642258-24642277 | None:intergenic | 40.0% | |
ATCATGTCCAACACTGGTAA+GGG | - | Chr8:24642033-24642052 | None:intergenic | 40.0% | |
CCATAAAGATAACACCTCGA+TGG | - | Chr8:24641274-24641293 | None:intergenic | 40.0% | |
CCATTGGATTGCAATACCTA+TGG | - | Chr8:24642092-24642111 | None:intergenic | 40.0% | |
GGATTGAGTTTCAATCCTGA+CGG | + | Chr8:24640836-24640855 | MsG0880043427.01.T01:CDS | 40.0% | |
GTCCATATCTCCAATCTGAA+TGG | - | Chr8:24641332-24641351 | None:intergenic | 40.0% | |
TCGAGCATCTTGATATTGTC+CGG | - | Chr8:24641179-24641198 | None:intergenic | 40.0% | |
TGACCATGTTGGTCAAATGT+GGG | + | Chr8:24642208-24642227 | MsG0880043427.01.T01:CDS | 40.0% | |
TTCAATACGGCCATTCAGAT+TGG | + | Chr8:24641319-24641338 | MsG0880043427.01.T01:CDS | 40.0% | |
! | AAATGTGGTCCTTTTGCCAT+TGG | - | Chr8:24642108-24642127 | None:intergenic | 40.0% |
! | CCATAGGTATTGCAATCCAA+TGG | + | Chr8:24642089-24642108 | MsG0880043427.01.T01:CDS | 40.0% |
! | CCATCGAGGTGTTATCTTTA+TGG | + | Chr8:24641271-24641290 | MsG0880043427.01.T01:CDS | 40.0% |
! | GAACATTTTCTCGTGTCTCA+AGG | + | Chr8:24641559-24641578 | MsG0880043427.01.T01:intron | 40.0% |
! | TTAGAGCCTCTAAGGATTAG+TGG | + | Chr8:24641352-24641371 | MsG0880043427.01.T01:CDS | 40.0% |
!! | AGGTGTCTTGTTATTGGGTA+TGG | + | Chr8:24642150-24642169 | MsG0880043427.01.T01:CDS | 40.0% |
!! | GTTTTCTGGAGAGAAAAGGA+CGG | + | Chr8:24641396-24641415 | MsG0880043427.01.T01:CDS | 40.0% |
!! | TAGGGAGGTGTCTTGTTATT+GGG | + | Chr8:24642145-24642164 | MsG0880043427.01.T01:CDS | 40.0% |
!! | TGTCTTGTTATTGGGTATGG+TGG | + | Chr8:24642153-24642172 | MsG0880043427.01.T01:CDS | 40.0% |
!! | TTAGGGAGGTGTCTTGTTAT+TGG | + | Chr8:24642144-24642163 | MsG0880043427.01.T01:CDS | 40.0% |
!!! | ATGCTCGAGATGCTATTTTG+TGG | + | Chr8:24641191-24641210 | MsG0880043427.01.T01:CDS | 40.0% |
!!! | TGCTCGAGATGCTATTTTGT+GGG | + | Chr8:24641192-24641211 | MsG0880043427.01.T01:CDS | 40.0% |
ACAAGGCCACTAATCCTTAG+AGG | - | Chr8:24641361-24641380 | None:intergenic | 45.0% | |
ACCATCAAACGACAATACCG+TGG | + | Chr8:24640997-24641016 | MsG0880043427.01.T01:CDS | 45.0% | |
CATCATGTCCAACACTGGTA+AGG | - | Chr8:24642034-24642053 | None:intergenic | 45.0% | |
CGAGCATCTTGATATTGTCC+GGG | - | Chr8:24641178-24641197 | None:intergenic | 45.0% | |
GAAGCTAGGTTTGATCCTGT+GGG | + | Chr8:24642240-24642259 | MsG0880043427.01.T01:CDS | 45.0% | |
GACCATGTTGGTCAAATGTG+GGG | + | Chr8:24642209-24642228 | MsG0880043427.01.T01:CDS | 45.0% | |
GAGCAATGGTTGAGAGACTA+TGG | + | Chr8:24641244-24641263 | MsG0880043427.01.T01:CDS | 45.0% | |
GATCAAACCTAGCTTCAACC+TGG | - | Chr8:24642236-24642255 | None:intergenic | 45.0% | |
GCGACAGAGACAACAATACT+AGG | - | Chr8:24641127-24641146 | None:intergenic | 45.0% | |
GGCCATTCAGATTGGAGATA+TGG | + | Chr8:24641327-24641346 | MsG0880043427.01.T01:CDS | 45.0% | |
GTGACCATGTTGGTCAAATG+TGG | + | Chr8:24642207-24642226 | MsG0880043427.01.T01:CDS | 45.0% | |
TGAAGCTAGGTTTGATCCTG+TGG | + | Chr8:24642239-24642258 | MsG0880043427.01.T01:CDS | 45.0% | |
! | ACCAGTGTTGGACATGATGT+GGG | + | Chr8:24642035-24642054 | MsG0880043427.01.T01:CDS | 45.0% |
! | TACCAGTGTTGGACATGATG+TGG | + | Chr8:24642034-24642053 | MsG0880043427.01.T01:CDS | 45.0% |
!! | ATAACCGCACTAGCTCTAGT+AGG | - | Chr8:24642290-24642309 | None:intergenic | 45.0% |
!! | TAACCGCACTAGCTCTAGTA+GGG | - | Chr8:24642289-24642308 | None:intergenic | 45.0% |
!! | TGACTTGTTTGGATGTGCGA+TGG | + | Chr8:24641537-24641556 | MsG0880043427.01.T01:intron | 45.0% |
AAAGGACGGCCTCGGAAATA+AGG | + | Chr8:24641410-24641429 | MsG0880043427.01.T01:CDS | 50.0% | |
ACACTGGTAAGGGCAAAGTC+TGG | - | Chr8:24642023-24642042 | None:intergenic | 50.0% | |
CAATATCGGTAAACGCGCCA+CGG | - | Chr8:24641017-24641036 | None:intergenic | 50.0% | |
CGAATCCTGATGGAGAGCAA+TGG | + | Chr8:24641230-24641249 | MsG0880043427.01.T01:CDS | 50.0% | |
CTCAACCATTGCTCTCCATC+AGG | - | Chr8:24641238-24641257 | None:intergenic | 50.0% | |
GACCCCACATTTGACCAACA+TGG | - | Chr8:24642214-24642233 | None:intergenic | 50.0% | |
GACTTTGCCCTTACCAGTGT+TGG | + | Chr8:24642023-24642042 | MsG0880043427.01.T01:CDS | 50.0% | |
GGCACTGCACAACCAAACAT+AGG | + | Chr8:24641672-24641691 | MsG0880043427.01.T01:intron | 50.0% | |
TGACCCTACTAGAGCTAGTG+CGG | + | Chr8:24642283-24642302 | MsG0880043427.01.T01:CDS | 50.0% | |
TGTCTCTGTCGCCTTTCGTT+GGG | + | Chr8:24641135-24641154 | MsG0880043427.01.T01:CDS | 50.0% | |
TTATGGGTACCAGCATCAGC+CGG | - | Chr8:24641076-24641095 | None:intergenic | 50.0% | |
TTGTCTCTGTCGCCTTTCGT+TGG | + | Chr8:24641134-24641153 | MsG0880043427.01.T01:CDS | 50.0% | |
! | CTGGTCCGTTGCAAACCTTT+TGG | - | Chr8:24642004-24642023 | None:intergenic | 50.0% |
! | GCCACGGTATTGTCGTTTGA+TGG | - | Chr8:24641001-24641020 | None:intergenic | 50.0% |
! | TGGGTATGGTGGAGACATCA+TGG | + | Chr8:24642164-24642183 | MsG0880043427.01.T01:CDS | 50.0% |
!! | TTGAGGGTGTCTTGTAGGCA+CGG | - | Chr8:24640871-24640890 | None:intergenic | 50.0% |
ACCTTCACCGGGGGTTTCTA+CGG | + | Chr8:24640907-24640926 | MsG0880043427.01.T01:CDS | 55.0% | |
AGAAACCCCCGGTGAAGGTT+CGG | - | Chr8:24640906-24640925 | None:intergenic | 55.0% | |
CGGGGACAAATCGTGACCAT+AGG | + | Chr8:24642073-24642092 | MsG0880043427.01.T01:CDS | 55.0% | |
GAGACTATGGTGACCCATCG+AGG | + | Chr8:24641257-24641276 | MsG0880043427.01.T01:CDS | 55.0% | |
GCCCACATCATGTCCAACAC+TGG | - | Chr8:24642039-24642058 | None:intergenic | 55.0% | |
GTTGGACATGATGTGGGCCA+TGG | + | Chr8:24642041-24642060 | MsG0880043427.01.T01:CDS | 55.0% | |
GTTGGTCAAATGTGGGGTCC+AGG | + | Chr8:24642215-24642234 | MsG0880043427.01.T01:CDS | 55.0% | |
TATGGGTACCAGCATCAGCC+GGG | - | Chr8:24641075-24641094 | None:intergenic | 55.0% | |
TGGAGAGAAAAGGACGGCCT+CGG | + | Chr8:24641402-24641421 | MsG0880043427.01.T01:CDS | 55.0% | |
TGGTCACGATTTGTCCCCGT+AGG | - | Chr8:24642072-24642091 | None:intergenic | 55.0% | |
TGGTTGGGTCATCCTAAGCC+CGG | + | Chr8:24641054-24641073 | MsG0880043427.01.T01:CDS | 55.0% | |
TGTCCGGGTAACCTAGTCTC+TGG | - | Chr8:24641163-24641182 | None:intergenic | 55.0% | |
TTGGACACCGTAGAAACCCC+CGG | - | Chr8:24640917-24640936 | None:intergenic | 55.0% | |
!! | GTCGGTTGAGGGTGTCTTGT+AGG | - | Chr8:24640876-24640895 | None:intergenic | 55.0% |
AAACCCCCGGTGAAGGTTCG+GGG | - | Chr8:24640904-24640923 | None:intergenic | 60.0% | |
ACCGTAGAAACCCCCGGTGA+AGG | - | Chr8:24640911-24640930 | None:intergenic | 60.0% | |
AGTCTCTGGCGCCCAACGAA+AGG | - | Chr8:24641149-24641168 | None:intergenic | 60.0% | |
ATCCTAAGCCCGGCTGATGC+TGG | + | Chr8:24641064-24641083 | MsG0880043427.01.T01:CDS | 60.0% | |
GAAACCCCCGGTGAAGGTTC+GGG | - | Chr8:24640905-24640924 | None:intergenic | 60.0% | |
GCGCCAGAGACTAGGTTACC+CGG | + | Chr8:24641157-24641176 | MsG0880043427.01.T01:CDS | 60.0% | |
TACCAGCATCAGCCGGGCTT+AGG | - | Chr8:24641069-24641088 | None:intergenic | 60.0% | |
TGAAGGTTCGGGGTTCGCGT+CGG | - | Chr8:24640894-24640913 | None:intergenic | 60.0% | |
TGTCCCCGTAGGCAAAGCCA+TGG | - | Chr8:24642061-24642080 | None:intergenic | 60.0% | |
TTCGTTGGGCGCCAGAGACT+AGG | + | Chr8:24641149-24641168 | MsG0880043427.01.T01:CDS | 60.0% | |
! | AGGGTGTCTTGTAGGCACGG+TGG | - | Chr8:24640868-24640887 | None:intergenic | 60.0% |
! | GTGGGCCATGGCTTTGCCTA+CGG | + | Chr8:24642053-24642072 | MsG0880043427.01.T01:CDS | 60.0% |
! | GTGGGGTCCAGGTTGAAGCT+AGG | + | Chr8:24642226-24642245 | MsG0880043427.01.T01:CDS | 60.0% |
! | TGGGCCATGGCTTTGCCTAC+GGG | + | Chr8:24642054-24642073 | MsG0880043427.01.T01:CDS | 60.0% |
CGAACCCCGAACCTTCACCG+GGG | + | Chr8:24640897-24640916 | MsG0880043427.01.T01:CDS | 65.0% | |
CGCGAACCCCGAACCTTCAC+CGG | + | Chr8:24640895-24640914 | MsG0880043427.01.T01:CDS | 65.0% | |
GAACCCCGAACCTTCACCGG+GGG | + | Chr8:24640898-24640917 | MsG0880043427.01.T01:CDS | 65.0% | |
GCACGGTGGAGAGTTCCGTC+AGG | - | Chr8:24640854-24640873 | None:intergenic | 65.0% | |
GCGAACCCCGAACCTTCACC+GGG | + | Chr8:24640896-24640915 | MsG0880043427.01.T01:CDS | 65.0% | |
! | GGGCCATGGCTTTGCCTACG+GGG | + | Chr8:24642055-24642074 | MsG0880043427.01.T01:CDS | 65.0% |
!! | TCGGGGTTCGCGTCGGTTGA+GGG | - | Chr8:24640887-24640906 | None:intergenic | 65.0% |
!! | TTCGGGGTTCGCGTCGGTTG+AGG | - | Chr8:24640888-24640907 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 24640806 | 24642311 | 24640806 | ID=MsG0880043427.01;Name=MsG0880043427.01 |
Chr8 | mRNA | 24640806 | 24642311 | 24640806 | ID=MsG0880043427.01.T01;Parent=MsG0880043427.01;Name=MsG0880043427.01.T01;_AED=0.25;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|309 |
Chr8 | exon | 24640806 | 24641431 | 24640806 | ID=MsG0880043427.01.T01:exon:9137;Parent=MsG0880043427.01.T01 |
Chr8 | exon | 24642008 | 24642311 | 24642008 | ID=MsG0880043427.01.T01:exon:9138;Parent=MsG0880043427.01.T01 |
Chr8 | CDS | 24640806 | 24641431 | 24640806 | ID=MsG0880043427.01.T01:cds;Parent=MsG0880043427.01.T01 |
Chr8 | CDS | 24642008 | 24642311 | 24642008 | ID=MsG0880043427.01.T01:cds;Parent=MsG0880043427.01.T01 |
Gene Sequence |
Protein sequence |