Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034110.01.T01 | RHN69572.1 | 91.026 | 78 | 7 | 0 | 104 | 181 | 47 | 124 | 1.39E-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034110.01.T01 | B8AXC3 | 73.913 | 92 | 24 | 0 | 90 | 181 | 195 | 286 | 1.45E-32 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034110.01.T01 | A0A396IVJ2 | 91.026 | 78 | 7 | 0 | 104 | 181 | 47 | 124 | 6.65e-43 | 149 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0680034109.01 | MsG0680034110.01 | 0.860430 | 2.077706e-63 | 5.677976e-60 |
| MsG0680034110.01 | MsG0880042033.01 | 0.800707 | 1.270320e-48 | 5.955158e-46 |
| MsG0680034110.01 | MsG0880047250.01 | 0.826686 | 2.367712e-54 | 2.236189e-51 |
| MsG0380015186.01 | MsG0680034110.01 | 0.829095 | 6.235943e-55 | 6.318246e-52 |
| MsG0380017189.01 | MsG0680034110.01 | 0.820116 | 8.129182e-53 | 6.376109e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034110.01.T01 | MTR_4g061200 | 84.783 | 92 | 14 | 0 | 90 | 181 | 155 | 246 | 2.08e-40 | 140 |
| MsG0680034110.01.T01 | MTR_4g061200 | 84.783 | 92 | 14 | 0 | 90 | 181 | 155 | 246 | 2.81e-40 | 140 |
| MsG0680034110.01.T01 | MTR_4g061200 | 84.783 | 92 | 14 | 0 | 90 | 181 | 155 | 246 | 3.82e-40 | 141 |
| MsG0680034110.01.T01 | MTR_4g061200 | 84.783 | 92 | 14 | 0 | 90 | 181 | 155 | 246 | 5.13e-40 | 141 |
| MsG0680034110.01.T01 | MTR_3g090510 | 89.773 | 88 | 9 | 0 | 94 | 181 | 163 | 250 | 5.65e-40 | 140 |
| MsG0680034110.01.T01 | MTR_7g060560 | 84.091 | 88 | 13 | 1 | 94 | 181 | 156 | 242 | 5.04e-34 | 124 |
| MsG0680034110.01.T01 | MTR_7g061190 | 75.000 | 88 | 22 | 0 | 94 | 181 | 9 | 96 | 9.75e-33 | 114 |
| MsG0680034110.01.T01 | MTR_4g094868 | 72.826 | 92 | 25 | 0 | 90 | 181 | 44 | 135 | 1.10e-32 | 120 |
| MsG0680034110.01.T01 | MTR_7g100590 | 72.826 | 92 | 25 | 0 | 90 | 181 | 163 | 254 | 1.79e-32 | 121 |
| MsG0680034110.01.T01 | MTR_5g016810 | 72.826 | 92 | 25 | 0 | 90 | 181 | 176 | 267 | 7.75e-32 | 119 |
| MsG0680034110.01.T01 | MTR_4g094868 | 72.826 | 92 | 25 | 0 | 90 | 181 | 200 | 291 | 7.79e-32 | 120 |
| MsG0680034110.01.T01 | MTR_4g094868 | 72.826 | 92 | 25 | 0 | 90 | 181 | 200 | 291 | 8.25e-32 | 120 |
| MsG0680034110.01.T01 | MTR_5g016810 | 72.527 | 91 | 25 | 0 | 90 | 180 | 176 | 266 | 4.22e-31 | 117 |
| MsG0680034110.01.T01 | MTR_2g093060 | 71.739 | 92 | 26 | 0 | 90 | 181 | 158 | 249 | 5.36e-31 | 117 |
| MsG0680034110.01.T01 | MTR_2g093060 | 71.739 | 92 | 26 | 0 | 90 | 181 | 158 | 249 | 6.48e-31 | 117 |
| MsG0680034110.01.T01 | MTR_2g093060 | 71.739 | 92 | 26 | 0 | 90 | 181 | 158 | 249 | 6.68e-31 | 117 |
| MsG0680034110.01.T01 | MTR_3g075230 | 92.157 | 51 | 4 | 0 | 8 | 58 | 256 | 306 | 9.02e-23 | 93.2 |
| MsG0680034110.01.T01 | MTR_1g037030 | 85.417 | 48 | 7 | 0 | 132 | 179 | 118 | 165 | 1.69e-22 | 90.1 |
| MsG0680034110.01.T01 | MTR_4g097520 | 45.556 | 90 | 48 | 1 | 93 | 181 | 347 | 436 | 2.90e-20 | 87.8 |
| MsG0680034110.01.T01 | MTR_3g103460 | 45.556 | 90 | 48 | 1 | 93 | 181 | 347 | 436 | 8.29e-20 | 86.3 |
| MsG0680034110.01.T01 | MTR_8g020510 | 44.444 | 90 | 49 | 1 | 93 | 181 | 285 | 374 | 4.55e-19 | 84.3 |
| MsG0680034110.01.T01 | MTR_7g009410 | 45.556 | 90 | 48 | 1 | 93 | 181 | 102 | 191 | 6.46e-19 | 83.2 |
| MsG0680034110.01.T01 | MTR_7g080460 | 39.785 | 93 | 55 | 1 | 90 | 181 | 296 | 388 | 1.85e-18 | 82.4 |
| MsG0680034110.01.T01 | MTR_5g015070 | 43.011 | 93 | 52 | 1 | 90 | 181 | 286 | 378 | 2.04e-18 | 82.4 |
| MsG0680034110.01.T01 | MTR_1g017400 | 42.222 | 90 | 51 | 1 | 93 | 181 | 349 | 438 | 2.45e-18 | 82.0 |
| MsG0680034110.01.T01 | MTR_4g127930 | 40.860 | 93 | 54 | 1 | 90 | 181 | 196 | 288 | 3.98e-18 | 81.3 |
| MsG0680034110.01.T01 | MTR_6g011490 | 44.444 | 90 | 49 | 1 | 93 | 181 | 98 | 187 | 4.83e-18 | 80.5 |
| MsG0680034110.01.T01 | MTR_4g130270 | 41.935 | 93 | 53 | 1 | 90 | 181 | 84 | 176 | 1.27e-17 | 79.3 |
| MsG0680034110.01.T01 | MTR_5g031880 | 44.444 | 90 | 49 | 1 | 93 | 181 | 261 | 350 | 1.49e-17 | 79.7 |
| MsG0680034110.01.T01 | MTR_4g065370 | 37.634 | 93 | 57 | 1 | 90 | 181 | 200 | 292 | 2.45e-17 | 79.3 |
| MsG0680034110.01.T01 | MTR_8g068510 | 45.556 | 90 | 48 | 1 | 93 | 181 | 168 | 257 | 3.18e-17 | 78.6 |
| MsG0680034110.01.T01 | MTR_8g044070 | 45.556 | 90 | 48 | 1 | 93 | 181 | 92 | 181 | 7.19e-17 | 77.4 |
| MsG0680034110.01.T01 | MTR_2g098180 | 38.710 | 93 | 56 | 1 | 90 | 181 | 204 | 296 | 7.36e-17 | 77.8 |
| MsG0680034110.01.T01 | MTR_7g055620 | 76.190 | 42 | 10 | 0 | 140 | 181 | 6 | 47 | 1.52e-14 | 70.9 |
| MsG0680034110.01.T01 | MTR_7g111940 | 88.636 | 44 | 5 | 0 | 89 | 132 | 115 | 158 | 1.25e-13 | 66.2 |
| MsG0680034110.01.T01 | MTR_8g044040 | 44.444 | 90 | 49 | 1 | 93 | 181 | 93 | 182 | 5.81e-13 | 66.2 |
| MsG0680034110.01.T01 | MTR_8g468920 | 45.556 | 90 | 48 | 1 | 93 | 181 | 106 | 195 | 7.22e-13 | 66.2 |
| MsG0680034110.01.T01 | MTR_4g007770 | 42.466 | 73 | 41 | 1 | 110 | 181 | 90 | 162 | 3.49e-11 | 60.8 |
| MsG0680034110.01.T01 | MTR_1g049140 | 57.500 | 80 | 32 | 2 | 90 | 168 | 161 | 239 | 7.90e-11 | 59.7 |
| MsG0680034110.01.T01 | MTR_1g049140 | 53.488 | 86 | 38 | 2 | 90 | 174 | 161 | 245 | 9.78e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034110.01.T01 | AT2G28550 | 71.717 | 99 | 28 | 0 | 83 | 181 | 4 | 102 | 8.09e-35 | 124 |
| MsG0680034110.01.T01 | AT4G36920 | 75.000 | 92 | 23 | 0 | 90 | 181 | 155 | 246 | 2.11e-33 | 123 |
| MsG0680034110.01.T01 | AT4G36920 | 75.000 | 92 | 23 | 0 | 90 | 181 | 155 | 246 | 2.11e-33 | 123 |
| MsG0680034110.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 90 | 181 | 177 | 268 | 2.53e-33 | 119 |
| MsG0680034110.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 90 | 181 | 177 | 268 | 2.53e-33 | 119 |
| MsG0680034110.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 90 | 181 | 177 | 268 | 7.10e-33 | 120 |
| MsG0680034110.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 90 | 181 | 177 | 268 | 3.88e-32 | 120 |
| MsG0680034110.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 90 | 181 | 177 | 268 | 4.66e-32 | 120 |
| MsG0680034110.01.T01 | AT5G67180 | 69.565 | 92 | 28 | 0 | 90 | 181 | 120 | 211 | 3.03e-30 | 111 |
| MsG0680034110.01.T01 | AT5G67180 | 69.565 | 92 | 28 | 0 | 90 | 181 | 120 | 211 | 4.75e-30 | 111 |
| MsG0680034110.01.T01 | AT5G67180 | 69.565 | 92 | 28 | 0 | 90 | 181 | 120 | 211 | 5.95e-30 | 111 |
| MsG0680034110.01.T01 | AT5G67180 | 69.565 | 92 | 28 | 0 | 90 | 181 | 120 | 211 | 9.70e-30 | 112 |
| MsG0680034110.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 90 | 179 | 184 | 273 | 2.40e-20 | 87.8 |
| MsG0680034110.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 90 | 179 | 184 | 273 | 2.54e-20 | 87.8 |
| MsG0680034110.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 90 | 179 | 184 | 273 | 2.76e-20 | 87.8 |
| MsG0680034110.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 90 | 179 | 184 | 273 | 2.83e-20 | 87.0 |
| MsG0680034110.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 90 | 179 | 184 | 273 | 2.83e-20 | 87.0 |
| MsG0680034110.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 90 | 179 | 184 | 273 | 2.83e-20 | 87.0 |
| MsG0680034110.01.T01 | AT2G39250 | 52.000 | 75 | 36 | 0 | 90 | 164 | 132 | 206 | 4.67e-20 | 84.3 |
| MsG0680034110.01.T01 | AT2G39250 | 52.000 | 75 | 36 | 0 | 90 | 164 | 132 | 206 | 8.48e-20 | 85.1 |
| MsG0680034110.01.T01 | AT5G17430 | 40.860 | 93 | 54 | 1 | 90 | 181 | 244 | 336 | 3.53e-19 | 84.7 |
| MsG0680034110.01.T01 | AT1G51190 | 39.785 | 93 | 55 | 1 | 90 | 181 | 224 | 316 | 4.66e-19 | 84.3 |
| MsG0680034110.01.T01 | AT3G48420 | 84.314 | 51 | 8 | 0 | 8 | 58 | 252 | 302 | 5.22e-19 | 82.8 |
| MsG0680034110.01.T01 | AT5G57390 | 40.860 | 93 | 54 | 1 | 90 | 181 | 237 | 329 | 6.24e-19 | 84.0 |
| MsG0680034110.01.T01 | AT5G57390 | 40.860 | 93 | 54 | 1 | 90 | 181 | 119 | 211 | 7.75e-19 | 83.2 |
| MsG0680034110.01.T01 | AT4G37750 | 40.860 | 93 | 54 | 1 | 90 | 181 | 317 | 409 | 8.90e-19 | 83.2 |
| MsG0680034110.01.T01 | AT5G17430 | 40.860 | 93 | 54 | 1 | 90 | 181 | 182 | 274 | 1.57e-18 | 82.8 |
| MsG0680034110.01.T01 | AT1G72570 | 40.860 | 93 | 54 | 1 | 90 | 181 | 257 | 349 | 1.80e-18 | 82.0 |
| MsG0680034110.01.T01 | AT5G65510 | 41.935 | 93 | 53 | 1 | 90 | 181 | 207 | 299 | 1.30e-17 | 79.0 |
| MsG0680034110.01.T01 | AT5G65510 | 41.935 | 93 | 53 | 1 | 90 | 181 | 265 | 357 | 1.34e-17 | 80.1 |
| MsG0680034110.01.T01 | AT5G65510 | 41.935 | 93 | 53 | 1 | 90 | 181 | 265 | 357 | 1.34e-17 | 80.1 |
| MsG0680034110.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 90 | 181 | 302 | 394 | 1.35e-17 | 80.1 |
| MsG0680034110.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 90 | 181 | 302 | 394 | 1.35e-17 | 80.1 |
| MsG0680034110.01.T01 | AT5G65510 | 41.935 | 93 | 53 | 1 | 90 | 181 | 207 | 299 | 1.36e-17 | 79.7 |
| MsG0680034110.01.T01 | AT3G20840 | 37.634 | 93 | 57 | 1 | 90 | 181 | 215 | 307 | 1.49e-17 | 79.7 |
| MsG0680034110.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 90 | 181 | 264 | 356 | 1.57e-17 | 79.7 |
| MsG0680034110.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 90 | 181 | 264 | 356 | 1.57e-17 | 79.7 |
| MsG0680034110.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 90 | 181 | 287 | 379 | 1.59e-17 | 79.7 |
| MsG0680034110.01.T01 | AT3G54320 | 40.860 | 93 | 54 | 1 | 90 | 181 | 33 | 125 | 2.42e-17 | 78.6 |
| MsG0680034110.01.T01 | AT3G54320 | 40.860 | 93 | 54 | 1 | 90 | 181 | 33 | 125 | 2.42e-17 | 78.6 |
| MsG0680034110.01.T01 | AT3G54320 | 40.860 | 93 | 54 | 1 | 90 | 181 | 99 | 191 | 4.23e-17 | 78.2 |
| MsG0680034110.01.T01 | AT3G54320 | 40.860 | 93 | 54 | 1 | 90 | 181 | 99 | 191 | 4.48e-17 | 78.2 |
| MsG0680034110.01.T01 | AT5G10510 | 40.594 | 101 | 58 | 2 | 82 | 181 | 315 | 414 | 1.60e-16 | 77.0 |
| MsG0680034110.01.T01 | AT5G10510 | 42.222 | 90 | 51 | 1 | 93 | 181 | 264 | 353 | 1.68e-16 | 76.6 |
| MsG0680034110.01.T01 | AT3G54990 | 55.422 | 83 | 37 | 0 | 90 | 172 | 146 | 228 | 1.75e-15 | 72.4 |
| MsG0680034110.01.T01 | AT3G54990 | 55.422 | 83 | 37 | 0 | 90 | 172 | 146 | 228 | 3.52e-15 | 72.4 |
| MsG0680034110.01.T01 | AT1G79700 | 45.161 | 93 | 50 | 1 | 90 | 181 | 10 | 102 | 4.08e-14 | 68.6 |
| MsG0680034110.01.T01 | AT1G79700 | 45.161 | 93 | 50 | 1 | 90 | 181 | 86 | 178 | 1.13e-13 | 68.2 |
| MsG0680034110.01.T01 | AT1G79700 | 46.154 | 91 | 48 | 1 | 92 | 181 | 6 | 96 | 1.62e-13 | 66.6 |
| MsG0680034110.01.T01 | AT1G16060 | 44.086 | 93 | 51 | 1 | 90 | 181 | 22 | 114 | 3.51e-13 | 66.2 |
| MsG0680034110.01.T01 | AT1G16060 | 44.086 | 93 | 51 | 1 | 90 | 181 | 92 | 184 | 7.52e-13 | 65.9 |
| MsG0680034110.01.T01 | AT1G79700 | 45.455 | 88 | 47 | 1 | 90 | 176 | 86 | 173 | 2.25e-12 | 64.3 |
Find 35 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCACTTGCAGTTCATAT+TGG | 0.363079 | 6:+80771586 | MsG0680034110.01.T01:intron |
| ATCGAGCTGCGATTAAATTC+AGG | 0.379752 | 6:+80771964 | MsG0680034110.01.T01:CDS |
| AAATGCATTATGCAGGTATA+CGG | 0.405222 | 6:+80770483 | MsG0680034110.01.T01:intron |
| GCATTGATTCTTCCCTTAAG+AGG | 0.406835 | 6:+80771645 | MsG0680034110.01.T01:CDS |
| GACGTTGTATTTGACTTCAT+TGG | 0.414112 | 6:+80770529 | MsG0680034110.01.T01:CDS |
| GCAAAATCAGGCTCTACTAT+TGG | 0.434597 | 6:+80771623 | MsG0680034110.01.T01:CDS |
| TTATGATGATGATCTTAAAC+AGG | 0.440099 | 6:+80772022 | MsG0680034110.01.T01:CDS |
| TTTAATCGCAGCTCGATCAT+AGG | 0.441826 | 6:-80771958 | None:intergenic |
| CTGGTCGAGGACAGCGCTAT+AGG | 0.446544 | 6:+80770208 | MsG0680034110.01.T01:CDS |
| CTAGCAGCCGCTAAAGTAGC+TGG | 0.453585 | 6:+80770232 | MsG0680034110.01.T01:CDS |
| TGGCAGCAAAGTGCAAAATC+AGG | 0.459814 | 6:+80771611 | MsG0680034110.01.T01:CDS |
| TGGCAGTTGGGAAGCTCGAA+TGG | 0.485503 | 6:+80772230 | MsG0680034110.01.T01:CDS |
| GCGATTAAATTCAGGGGAGT+TGG | 0.497882 | 6:+80771972 | MsG0680034110.01.T01:CDS |
| CTTCATCCCAGCTACTTTAG+CGG | 0.503426 | 6:-80770239 | None:intergenic |
| GCCAGATCAAACCTCTCCTC+AGG | 0.506138 | 6:-80770559 | None:intergenic |
| CACTGCACAAATGTGGCAGT+TGG | 0.508097 | 6:+80772217 | MsG0680034110.01.T01:CDS |
| GCTCGAATGGGTCAATTCCT+TGG | 0.510521 | 6:+80772243 | MsG0680034110.01.T01:CDS |
| ACTGCACAAATGTGGCAGTT+GGG | 0.511914 | 6:+80772218 | MsG0680034110.01.T01:CDS |
| TCTTATTTACAGATGTGTCC+TGG | 0.522878 | 6:+80770189 | MsG0680034110.01.T01:CDS |
| TCGAGCTGCGATTAAATTCA+GGG | 0.538997 | 6:+80771965 | MsG0680034110.01.T01:CDS |
| TTACAGATGTGTCCTGGTCG+AGG | 0.542080 | 6:+80770195 | MsG0680034110.01.T01:CDS |
| TTGGTGATCCTCCTGAGGAG+AGG | 0.552332 | 6:+80770548 | MsG0680034110.01.T01:CDS |
| ACACAGCTCATGTTGCTGCT+AGG | 0.553358 | 6:+80771853 | MsG0680034110.01.T01:CDS |
| CTATAGCGCTGTCCTCGACC+AGG | 0.567780 | 6:-80770207 | None:intergenic |
| TTATGCAGGTATACGGCAGA+TGG | 0.570206 | 6:+80770490 | MsG0680034110.01.T01:intron |
| GGCAGTTGGGAAGCTCGAAT+GGG | 0.571868 | 6:+80772231 | MsG0680034110.01.T01:CDS |
| AGTGTATAGTAACAAAGAGC+GGG | 0.580787 | 6:+80770260 | MsG0680034110.01.T01:CDS |
| ACTTGCAGTTCATATTGGCA+TGG | 0.614305 | 6:+80771591 | MsG0680034110.01.T01:intron |
| TAGCAGCCGCTAAAGTAGCT+GGG | 0.615799 | 6:+80770233 | MsG0680034110.01.T01:CDS |
| CTTCATTGGTGATCCTCCTG+AGG | 0.623430 | 6:+80770543 | MsG0680034110.01.T01:CDS |
| AGATCAAACCTCTCCTCAGG+AGG | 0.625024 | 6:-80770556 | None:intergenic |
| AAGTGTATAGTAACAAAGAG+CGG | 0.628437 | 6:+80770259 | MsG0680034110.01.T01:CDS |
| GGAGTAACACTGCACAAATG+TGG | 0.639362 | 6:+80772210 | MsG0680034110.01.T01:CDS |
| AGAGGGAGTTCGAAGTACAG+AGG | 0.669918 | 6:+80772189 | MsG0680034110.01.T01:CDS |
| CGAGCTGCGATTAAATTCAG+GGG | 0.681626 | 6:+80771966 | MsG0680034110.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATCTTTTTTATTGTAAT+AGG | + | Chr6:80771233-80771252 | MsG0680034110.01.T01:intron | 10.0% |
| !!! | ATTATATGATTTACTATTTT+AGG | + | Chr6:80771789-80771808 | MsG0680034110.01.T01:intron | 10.0% |
| !!! | TTGTGTAATTAATTTTTTTA+TGG | + | Chr6:80771904-80771923 | MsG0680034110.01.T01:intron | 10.0% |
| !! | TCAACTATTTAACATATAAA+TGG | - | Chr6:80771284-80771303 | None:intergenic | 15.0% |
| !!! | GATTATTTTGTTTTTTTAGA+TGG | + | Chr6:80770945-80770964 | MsG0680034110.01.T01:intron | 15.0% |
| !! | GAAAAGATCAATGTTTATAT+TGG | + | Chr6:80770732-80770751 | MsG0680034110.01.T01:intron | 20.0% |
| !! | TTGTAGTTTATCTAAATTAG+AGG | + | Chr6:80771178-80771197 | MsG0680034110.01.T01:intron | 20.0% |
| !!! | GCAACTTTATGTTTTTTTAT+AGG | + | Chr6:80770306-80770325 | MsG0680034110.01.T01:intron | 20.0% |
| !!! | GTTTTGTATTTGATTTTTGT+AGG | + | Chr6:80771822-80771841 | MsG0680034110.01.T01:CDS | 20.0% |
| !!! | TAATGTTGTTGGATTATTTT+GGG | + | Chr6:80770882-80770901 | MsG0680034110.01.T01:intron | 20.0% |
| !!! | TTAATGTTGTTGGATTATTT+TGG | + | Chr6:80770881-80770900 | MsG0680034110.01.T01:intron | 20.0% |
| ! | AACGATTATATACCTTTGTA+GGG | - | Chr6:80771494-80771513 | None:intergenic | 25.0% |
| ! | AATTTAACAGTTGCTTATTC+TGG | + | Chr6:80771029-80771048 | MsG0680034110.01.T01:intron | 25.0% |
| ! | AGTCTTCTTAAATATCTCAA+TGG | + | Chr6:80771686-80771705 | MsG0680034110.01.T01:intron | 25.0% |
| ! | ATTTAACAGTTGCTTATTCT+GGG | + | Chr6:80771030-80771049 | MsG0680034110.01.T01:intron | 25.0% |
| ! | CCAGGAGAATTATAATAAAA+TGG | - | Chr6:80771344-80771363 | None:intergenic | 25.0% |
| ! | TGGATCATTGTTTCATAATT+TGG | + | Chr6:80771741-80771760 | MsG0680034110.01.T01:intron | 25.0% |
| ! | TTGATGCTAATTAATGTTGT+TGG | + | Chr6:80770871-80770890 | MsG0680034110.01.T01:intron | 25.0% |
| !! | AAATCAATGTTTTCTCAAGA+GGG | + | Chr6:80772172-80772191 | MsG0680034110.01.T01:CDS | 25.0% |
| !! | ACATTGATCTTTTCATCATT+TGG | - | Chr6:80770726-80770745 | None:intergenic | 25.0% |
| !! | CCATTTTATTATAATTCTCC+TGG | + | Chr6:80771341-80771360 | MsG0680034110.01.T01:intron | 25.0% |
| !! | TTATGATGATGATCTTAAAC+AGG | + | Chr6:80772022-80772041 | MsG0680034110.01.T01:CDS | 25.0% |
| !! | TTTCATCATTTGGCTTAATA+GGG | - | Chr6:80770716-80770735 | None:intergenic | 25.0% |
| !!! | GTTGACTTTTGTATTTTATC+AGG | + | Chr6:80771411-80771430 | MsG0680034110.01.T01:intron | 25.0% |
| !!! | TTGTATTTGATTTTTGTAGG+TGG | + | Chr6:80771825-80771844 | MsG0680034110.01.T01:CDS | 25.0% |
| !!! | TTTTAGAACTTACCTCTTAA+GGG | - | Chr6:80771660-80771679 | None:intergenic | 25.0% |
| !!! | TTTTCATCATTTGGCTTAAT+AGG | - | Chr6:80770717-80770736 | None:intergenic | 25.0% |
| AAATGCATTATGCAGGTATA+CGG | + | Chr6:80770483-80770502 | MsG0680034110.01.T01:intron | 30.0% | |
| AAGTGTATAGTAACAAAGAG+CGG | + | Chr6:80770259-80770278 | MsG0680034110.01.T01:CDS | 30.0% | |
| GAACGATTATATACCTTTGT+AGG | - | Chr6:80771495-80771514 | None:intergenic | 30.0% | |
| TAATCTCAAATGCATTATGC+AGG | + | Chr6:80770476-80770495 | MsG0680034110.01.T01:intron | 30.0% | |
| TGATAGCTTATGAAAGTTAC+TGG | - | Chr6:80771768-80771787 | None:intergenic | 30.0% | |
| TTAGATGGACAATGAATTTG+AGG | + | Chr6:80770960-80770979 | MsG0680034110.01.T01:intron | 30.0% | |
| TTGATGAATGTGAAACTAGA+TGG | + | Chr6:80772066-80772085 | MsG0680034110.01.T01:intron | 30.0% | |
| TTTACTATGAGAGAGAGAAA+TGG | + | Chr6:80771099-80771118 | MsG0680034110.01.T01:intron | 30.0% | |
| ! | AGGCTCTGATATTCAAAATT+TGG | - | Chr6:80771941-80771960 | None:intergenic | 30.0% |
| ! | AGTAAGTTATGTTAGTTTCC+CGG | + | Chr6:80770337-80770356 | MsG0680034110.01.T01:intron | 30.0% |
| ! | CAAATCAATGTTTTCTCAAG+AGG | + | Chr6:80772171-80772190 | MsG0680034110.01.T01:CDS | 30.0% |
| ! | GATTTTCTGATTCTGATTCT+GGG | + | Chr6:80770919-80770938 | MsG0680034110.01.T01:intron | 30.0% |
| ! | GGGTATTTCTATTTACTGAA+TGG | + | Chr6:80770280-80770299 | MsG0680034110.01.T01:intron | 30.0% |
| ! | TGACATATTGCTTCTAAAGA+AGG | - | Chr6:80770597-80770616 | None:intergenic | 30.0% |
| ! | TGATTTTCTGATTCTGATTC+TGG | + | Chr6:80770918-80770937 | MsG0680034110.01.T01:intron | 30.0% |
| !!! | GTTTTAGAACTTACCTCTTA+AGG | - | Chr6:80771661-80771680 | None:intergenic | 30.0% |
| AATGGAAGGACAATAGAAAG+TGG | + | Chr6:80771117-80771136 | MsG0680034110.01.T01:intron | 35.0% | |
| ACAAGCAACTTCTGATATGA+TGG | + | Chr6:80770987-80771006 | MsG0680034110.01.T01:intron | 35.0% | |
| ACAATGATCCATCAGTAAGT+AGG | - | Chr6:80771732-80771751 | None:intergenic | 35.0% | |
| AGTAAACACCTTCCAGATAA+AGG | - | Chr6:80771085-80771104 | None:intergenic | 35.0% | |
| AGTGTATAGTAACAAAGAGC+GGG | + | Chr6:80770260-80770279 | MsG0680034110.01.T01:CDS | 35.0% | |
| ATGGACAATGAATTTGAGGA+TGG | + | Chr6:80770964-80770983 | MsG0680034110.01.T01:intron | 35.0% | |
| ATTGCACTTGCAGTTCATAT+TGG | + | Chr6:80771586-80771605 | MsG0680034110.01.T01:intron | 35.0% | |
| ATTTCAGTCCTTTATCTGGA+AGG | + | Chr6:80771074-80771093 | MsG0680034110.01.T01:intron | 35.0% | |
| ATTTGTCCAATGATCGGAAA+TGG | + | Chr6:80771530-80771549 | MsG0680034110.01.T01:intron | 35.0% | |
| GATATTCCATTTCCGATCAT+TGG | - | Chr6:80771539-80771558 | None:intergenic | 35.0% | |
| GGTAAGAGTGAAAAGAAATG+AGG | - | Chr6:80770695-80770714 | None:intergenic | 35.0% | |
| TGTGATTTCAGTCCTTTATC+TGG | + | Chr6:80771070-80771089 | MsG0680034110.01.T01:intron | 35.0% | |
| TTCTCCTGGATCTTCATTTA+TGG | + | Chr6:80771355-80771374 | MsG0680034110.01.T01:intron | 35.0% | |
| ! | AACAAATGTTTCTGCAAGCT+GGG | - | Chr6:80771460-80771479 | None:intergenic | 35.0% |
| ! | AGTGGTTCAATTGATTCACA+TGG | + | Chr6:80771135-80771154 | MsG0680034110.01.T01:intron | 35.0% |
| ! | CTTGTCATTTGTCCAATGAT+CGG | + | Chr6:80771524-80771543 | MsG0680034110.01.T01:intron | 35.0% |
| ! | GACGTTGTATTTGACTTCAT+TGG | + | Chr6:80770529-80770548 | MsG0680034110.01.T01:CDS | 35.0% |
| ! | GAGTTTAAAGTCAGAGATCT+CGG | - | Chr6:80770370-80770389 | None:intergenic | 35.0% |
| ! | TCTTATTTACAGATGTGTCC+TGG | + | Chr6:80770189-80770208 | MsG0680034110.01.T01:CDS | 35.0% |
| !! | AGCACTGATAGAAATAGTGA+AGG | - | Chr6:80770668-80770687 | None:intergenic | 35.0% |
| ACTTGCAGTTCATATTGGCA+TGG | + | Chr6:80771591-80771610 | MsG0680034110.01.T01:intron | 40.0% | |
| ATCGAGCTGCGATTAAATTC+AGG | + | Chr6:80771964-80771983 | MsG0680034110.01.T01:CDS | 40.0% | |
| CTATGAGAGAGAGAAATGGA+AGG | + | Chr6:80771103-80771122 | MsG0680034110.01.T01:intron | 40.0% | |
| GCAAAATCAGGCTCTACTAT+TGG | + | Chr6:80771623-80771642 | MsG0680034110.01.T01:CDS | 40.0% | |
| GTTGCCATAAATGAAGATCC+AGG | - | Chr6:80771362-80771381 | None:intergenic | 40.0% | |
| TAGCAAACTGTGAAGTGATG+AGG | + | Chr6:80770619-80770638 | MsG0680034110.01.T01:intron | 40.0% | |
| TCATTCGTGGAGCAAATTAC+AGG | - | Chr6:80770828-80770847 | None:intergenic | 40.0% | |
| TCGAGCTGCGATTAAATTCA+GGG | + | Chr6:80771965-80771984 | MsG0680034110.01.T01:CDS | 40.0% | |
| TGTTGCAAAATGCCCTACAA+AGG | + | Chr6:80771479-80771498 | MsG0680034110.01.T01:intron | 40.0% | |
| TTTAATCGCAGCTCGATCAT+AGG | - | Chr6:80771961-80771980 | None:intergenic | 40.0% | |
| ! | AGGTTTGATCTGGCATTTTG+TGG | + | Chr6:80770568-80770587 | MsG0680034110.01.T01:intron | 40.0% |
| ! | CAACAAATGTTTCTGCAAGC+TGG | - | Chr6:80771461-80771480 | None:intergenic | 40.0% |
| !! | GCATTGATTCTTCCCTTAAG+AGG | + | Chr6:80771645-80771664 | MsG0680034110.01.T01:CDS | 40.0% |
| ACTGCACAAATGTGGCAGTT+GGG | + | Chr6:80772218-80772237 | MsG0680034110.01.T01:CDS | 45.0% | |
| AGAGATCTCGGATTTGATCC+GGG | - | Chr6:80770358-80770377 | None:intergenic | 45.0% | |
| CAGAGAAGCTAACTCATTCG+TGG | - | Chr6:80770841-80770860 | None:intergenic | 45.0% | |
| CAGAGATCTCGGATTTGATC+CGG | - | Chr6:80770359-80770378 | None:intergenic | 45.0% | |
| CGAGCTGCGATTAAATTCAG+GGG | + | Chr6:80771966-80771985 | MsG0680034110.01.T01:CDS | 45.0% | |
| GCGATTAAATTCAGGGGAGT+TGG | + | Chr6:80771972-80771991 | MsG0680034110.01.T01:CDS | 45.0% | |
| GGAGTAACACTGCACAAATG+TGG | + | Chr6:80772210-80772229 | MsG0680034110.01.T01:CDS | 45.0% | |
| TGATGGCAAGCAGTCAACAA+AGG | + | Chr6:80771004-80771023 | MsG0680034110.01.T01:intron | 45.0% | |
| TGCAGAAGCCTACTTACTGA+TGG | + | Chr6:80771721-80771740 | MsG0680034110.01.T01:intron | 45.0% | |
| TGGCAGCAAAGTGCAAAATC+AGG | + | Chr6:80771611-80771630 | MsG0680034110.01.T01:CDS | 45.0% | |
| TTAGAAGTCCCACACTACGA+AGG | - | Chr6:80770425-80770444 | None:intergenic | 45.0% | |
| TTATGCAGGTATACGGCAGA+TGG | + | Chr6:80770490-80770509 | MsG0680034110.01.T01:intron | 45.0% | |
| ! | AAATGTTTCTGCAAGCTGGG+CGG | - | Chr6:80771457-80771476 | None:intergenic | 45.0% |
| ! | CTTCATCCCAGCTACTTTAG+CGG | - | Chr6:80770242-80770261 | None:intergenic | 45.0% |
| ACACAGCTCATGTTGCTGCT+AGG | + | Chr6:80771853-80771872 | MsG0680034110.01.T01:CDS | 50.0% | |
| AGAGGGAGTTCGAAGTACAG+AGG | + | Chr6:80772189-80772208 | MsG0680034110.01.T01:CDS | 50.0% | |
| AGATCAAACCTCTCCTCAGG+AGG | - | Chr6:80770559-80770578 | None:intergenic | 50.0% | |
| CACTGCACAAATGTGGCAGT+TGG | + | Chr6:80772217-80772236 | MsG0680034110.01.T01:CDS | 50.0% | |
| GCTCGAATGGGTCAATTCCT+TGG | + | Chr6:80772243-80772262 | MsG0680034110.01.T01:CDS | 50.0% | |
| GGTGAGCTAAGGGACATTGA+AGG | - | Chr6:80770392-80770411 | None:intergenic | 50.0% | |
| TAGCAGCCGCTAAAGTAGCT+GGG | + | Chr6:80770233-80770252 | MsG0680034110.01.T01:CDS | 50.0% | |
| TCCTGAGGAGAGGTTTGATC+TGG | + | Chr6:80770558-80770577 | MsG0680034110.01.T01:intron | 50.0% | |
| TTACAGATGTGTCCTGGTCG+AGG | + | Chr6:80770195-80770214 | MsG0680034110.01.T01:CDS | 50.0% | |
| ! | CTTCATTGGTGATCCTCCTG+AGG | + | Chr6:80770543-80770562 | MsG0680034110.01.T01:CDS | 50.0% |
| CTAGCAGCCGCTAAAGTAGC+TGG | + | Chr6:80770232-80770251 | MsG0680034110.01.T01:CDS | 55.0% | |
| GCCAGATCAAACCTCTCCTC+AGG | - | Chr6:80770562-80770581 | None:intergenic | 55.0% | |
| GGCAGTTGGGAAGCTCGAAT+GGG | + | Chr6:80772231-80772250 | MsG0680034110.01.T01:CDS | 55.0% | |
| TGGCAGTTGGGAAGCTCGAA+TGG | + | Chr6:80772230-80772249 | MsG0680034110.01.T01:CDS | 55.0% | |
| ! | TTGGTGATCCTCCTGAGGAG+AGG | + | Chr6:80770548-80770567 | MsG0680034110.01.T01:CDS | 55.0% |
| !! | CAGCTCGGTTGGTGAGCTAA+GGG | - | Chr6:80770402-80770421 | None:intergenic | 55.0% |
| ACCGAGCTGCCTTCGTAGTG+TGG | + | Chr6:80770413-80770432 | MsG0680034110.01.T01:intron | 60.0% | |
| CACTACGAAGGCAGCTCGGT+TGG | - | Chr6:80770413-80770432 | None:intergenic | 60.0% | |
| CCCACACTACGAAGGCAGCT+CGG | - | Chr6:80770417-80770436 | None:intergenic | 60.0% | |
| CCGAGCTGCCTTCGTAGTGT+GGG | + | Chr6:80770414-80770433 | MsG0680034110.01.T01:intron | 60.0% | |
| CTATAGCGCTGTCCTCGACC+AGG | - | Chr6:80770210-80770229 | None:intergenic | 60.0% | |
| CTGGTCGAGGACAGCGCTAT+AGG | + | Chr6:80770208-80770227 | MsG0680034110.01.T01:CDS | 60.0% | |
| !! | GCAGCTCGGTTGGTGAGCTA+AGG | - | Chr6:80770403-80770422 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 80770178 | 80772275 | 80770178 | ID=MsG0680034110.01;Name=MsG0680034110.01 |
| Chr6 | mRNA | 80770178 | 80772275 | 80770178 | ID=MsG0680034110.01.T01;Parent=MsG0680034110.01;Name=MsG0680034110.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0.2|0.33|1|0.4|0.66|6|0|181 |
| Chr6 | exon | 80770178 | 80770281 | 80770178 | ID=MsG0680034110.01.T01:exon:8309;Parent=MsG0680034110.01.T01 |
| Chr6 | exon | 80770498 | 80770569 | 80770498 | ID=MsG0680034110.01.T01:exon:8308;Parent=MsG0680034110.01.T01 |
| Chr6 | exon | 80771599 | 80771666 | 80771599 | ID=MsG0680034110.01.T01:exon:8307;Parent=MsG0680034110.01.T01 |
| Chr6 | exon | 80771811 | 80771874 | 80771811 | ID=MsG0680034110.01.T01:exon:8306;Parent=MsG0680034110.01.T01 |
| Chr6 | exon | 80771956 | 80772043 | 80771956 | ID=MsG0680034110.01.T01:exon:8305;Parent=MsG0680034110.01.T01 |
| Chr6 | exon | 80772126 | 80772275 | 80772126 | ID=MsG0680034110.01.T01:exon:8304;Parent=MsG0680034110.01.T01 |
| Chr6 | CDS | 80770178 | 80770281 | 80770178 | ID=MsG0680034110.01.T01:cds;Parent=MsG0680034110.01.T01 |
| Chr6 | CDS | 80770498 | 80770569 | 80770498 | ID=MsG0680034110.01.T01:cds;Parent=MsG0680034110.01.T01 |
| Chr6 | CDS | 80771599 | 80771666 | 80771599 | ID=MsG0680034110.01.T01:cds;Parent=MsG0680034110.01.T01 |
| Chr6 | CDS | 80771811 | 80771874 | 80771811 | ID=MsG0680034110.01.T01:cds;Parent=MsG0680034110.01.T01 |
| Chr6 | CDS | 80771956 | 80772043 | 80771956 | ID=MsG0680034110.01.T01:cds;Parent=MsG0680034110.01.T01 |
| Chr6 | CDS | 80772126 | 80772275 | 80772126 | ID=MsG0680034110.01.T01:cds;Parent=MsG0680034110.01.T01 |
| Gene Sequence |
| Protein sequence |
