AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035723.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035723.01.T01 MTR_6g088270 96.190 210 8 0 120 329 845 1054 4.92e-135 409
MsG0680035723.01.T01 MTR_6g088270 58.113 265 93 2 74 325 550 809 1.96e-93 300
MsG0680035723.01.T01 MTR_6g088270 95.000 120 6 0 1 120 625 744 3.81e-70 236
MsG0680035723.01.T01 MTR_6g088270 72.500 120 33 0 1 120 866 985 2.79e-53 188
MsG0680035723.01.T01 MTR_2g039780 72.989 174 31 3 157 329 58 216 2.99e-76 233
MsG0680035723.01.T01 MTR_2g039780 51.515 99 33 2 22 119 63 147 9.47e-24 97.4
MsG0680035723.01.T01 MTR_6g087300 68.306 183 29 1 119 301 204 357 9.73e-71 224
MsG0680035723.01.T01 MTR_6g087300 58.163 98 41 0 26 123 50 147 7.38e-28 111
MsG0680035723.01.T01 MTR_6g087300 41.026 156 42 3 166 319 50 157 1.42e-26 108
MsG0680035723.01.T01 MTR_6g087300 44.538 119 37 1 1 119 226 315 1.07e-20 91.7
MsG0680035723.01.T01 MTR_6g084360 71.687 166 18 1 156 321 973 1109 6.01e-67 227
MsG0680035723.01.T01 MTR_6g084360 48.333 120 32 2 17 135 974 1064 8.51e-24 102
MsG0680035723.01.T01 MTR_0428s0020 56.995 193 28 4 120 312 39 176 3.96e-54 177
MsG0680035723.01.T01 MTR_0428s0020 38.889 180 66 5 1 153 60 222 2.23e-24 99.4
MsG0680035723.01.T01 MTR_2g039790 80.909 110 8 1 120 229 16 112 4.40e-52 169
MsG0680035723.01.T01 MTR_2g039790 56.383 94 28 1 1 94 37 117 2.01e-26 102
MsG0680035723.01.T01 MTR_6g088240 53.191 188 71 3 142 317 1 183 7.77e-52 169
MsG0680035723.01.T01 MTR_6g088240 40.769 130 66 4 2 122 1 128 1.56e-16 77.0
MsG0680035723.01.T01 MTR_6g027070 66.667 135 25 2 1 134 29 144 2.59e-49 162
MsG0680035723.01.T01 MTR_6g027070 56.667 150 46 2 125 274 13 143 1.82e-47 157
MsG0680035723.01.T01 MTR_6g488290 56.111 180 24 4 120 299 39 163 1.09e-48 162
MsG0680035723.01.T01 MTR_6g488290 43.137 153 68 2 1 153 60 193 2.46e-27 106
MsG0680035723.01.T01 MTR_6g088250 85.057 87 13 0 120 206 1256 1342 1.56e-38 145
MsG0680035723.01.T01 MTR_6g088250 66.154 65 22 0 1 65 1277 1341 3.61e-20 92.0
MsG0680035723.01.T01 MTR_6g066260 64.211 95 34 0 13 107 3 97 1.30e-32 117
MsG0680035723.01.T01 MTR_6g066260 56.962 79 34 0 168 246 18 96 5.56e-24 94.7
MsG0680035723.01.T01 MTR_6g087200 72.368 76 11 1 45 120 1033 1098 3.06e-26 110
MsG0680035723.01.T01 MTR_6g087200 51.852 81 29 1 185 265 1033 1103 5.33e-20 91.7
MsG0680035723.01.T01 MTR_6g003970 47.525 101 52 1 121 221 23 122 2.60e-18 84.7
MsG0680035723.01.T01 MTR_6g087190 76.923 39 9 0 173 211 15 53 7.74e-15 68.9
MsG0680035723.01.T01 MTR_6g081090 89.474 38 4 0 119 156 5 42 1.53e-14 69.7
MsG0680035723.01.T01 MTR_6g488300 70.588 51 10 1 2 47 1284 1334 4.96e-13 70.5
MsG0680035723.01.T01 MTR_6g488300 37.273 110 63 2 74 183 1222 1325 2.98e-11 65.1
MsG0680035723.01.T01 MTR_0428s0030 39.640 111 61 2 74 183 1274 1379 1.32e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035723.01.T01 AT4G29060 81.068 206 36 1 114 319 749 951 3.29e-109 340
MsG0680035723.01.T01 AT4G29060 71.642 201 57 0 125 325 519 719 7.87e-96 304
MsG0680035723.01.T01 AT4G29060 84.167 120 19 0 1 120 535 654 1.02e-61 212
MsG0680035723.01.T01 AT4G29060 70.588 119 35 0 1 119 773 891 1.74e-49 177
MsG0680035723.01.T01 AT4G29060 75.385 195 42 1 125 319 519 707 8.93e-98 304
MsG0680035723.01.T01 AT4G29060 75.000 120 24 1 1 120 535 648 6.79e-53 185
MsG0680035723.01.T01 AT4G11120 27.628 333 189 11 3 323 91 383 5.88e-20 90.1
MsG0680035723.01.T01 AT4G11120 52.688 93 41 2 128 220 76 165 2.76e-18 85.5

Find 69 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTGTCACAATGGTTTC+CGG 0.229096 6:+111231367 None:intergenic
TCCTTCAGCTGCCAGTCTTC+CGG 0.299109 6:+111231555 None:intergenic
ACACTGTCATCCCTAATAAA+AGG 0.300952 6:+111231229 None:intergenic
GCAAGCATATCTCAGGAAAA+AGG 0.318552 6:-111231602 MsG0680035723.01.T01:CDS
TGACAGCAGGATCGGTGTTT+TGG 0.339026 6:-111233019 MsG0680035723.01.T01:CDS
TGTGTCTATTGAAGATATTC+CGG 0.348987 6:-111231386 MsG0680035723.01.T01:CDS
CCTTCCTTCGGCAGTTGCTC+TGG 0.387278 6:+111233059 None:intergenic
AGTAGTGGTCTCAGCCTCTT+TGG 0.388620 6:-111231710 MsG0680035723.01.T01:CDS
CTCTTTGAAAATTTCACCTC+GGG 0.404855 6:+111232966 None:intergenic
ACAATAACCAAATGTTGATT+AGG 0.433079 6:-111230990 MsG0680035723.01.T01:three_prime_UTR
CCATACCAGCGTAGCTTACA+AGG 0.437055 6:-111231099 MsG0680035723.01.T01:exon
AACGGAAGGCGATCTTGAAA+TGG 0.442168 6:-111231626 MsG0680035723.01.T01:CDS
AGGCAAAGTATAGCTGCTAT+TGG 0.446332 6:-111231187 MsG0680035723.01.T01:CDS
ACTGATCTGTATCTGTATTG+AGG 0.453212 6:-111230953 MsG0680035723.01.T01:three_prime_UTR
CCTTGTAAGCTACGCTGGTA+TGG 0.454533 6:+111231099 None:intergenic
AGAAGATCTTGCGTCTAAAC+CGG 0.459676 6:-111232830 MsG0680035723.01.T01:CDS
GTCCGCGCCTAATCAACATT+TGG 0.463484 6:+111230983 None:intergenic
AGAAACCGGTGCAGGGATGA+TGG 0.468491 6:-111231671 MsG0680035723.01.T01:CDS
TGATAAGAAATCCGGAAGAC+TGG 0.475292 6:-111231566 MsG0680035723.01.T01:CDS
AAATGAGAAATTCAAGGAGT+TGG 0.479305 6:-111231455 MsG0680035723.01.T01:CDS
GGTAGAATCTCAGAGAGGTT+AGG 0.483789 6:-111231274 MsG0680035723.01.T01:CDS
CTCATTTCTGCCAACAAAGT+CGG 0.497173 6:+111231471 None:intergenic
TCTTTCTTCACGAACCCCTC+AGG 0.498978 6:+111232874 None:intergenic
GCAAGTTGCTGCTTGTCCAC+AGG 0.499547 6:-111231416 MsG0680035723.01.T01:CDS
TAAGAAAGCTCTAGCTGAAA+CGG 0.503189 6:-111231644 MsG0680035723.01.T01:CDS
AAACACCGATCCTGCTGTCA+TGG 0.503436 6:+111233022 None:intergenic
AAATGGCGCAAGCATATCTC+AGG 0.509392 6:-111231609 MsG0680035723.01.T01:CDS
TCGAAGTTGTTTGACCAAAG+AGG 0.511389 6:+111231696 None:intergenic
TGGCAGAAATGAGAAATTCA+AGG 0.513242 6:-111231461 MsG0680035723.01.T01:CDS
GTAAGAACCTACCCTTCCTT+CGG 0.515924 6:+111233047 None:intergenic
CTTCGAGAAGAAACCGGTGC+AGG 0.515929 6:-111231679 MsG0680035723.01.T01:CDS
AAACAACTTCGAGAAGAAAC+CGG 0.517661 6:-111231685 MsG0680035723.01.T01:CDS
CCAGAGCAACTGCCGAAGGA+AGG 0.527704 6:-111233059 MsG0680035723.01.T01:CDS
TCATCCGCTGATAAGAAATC+CGG 0.529747 6:-111231574 MsG0680035723.01.T01:CDS
TGTTCTCGGGTTTCGAAGCA+AGG 0.537039 6:+111231317 None:intergenic
AACTGTGAAACCGACTTTGT+TGG 0.542867 6:-111231481 MsG0680035723.01.T01:CDS
GAAAACCTTGTAAGCTACGC+TGG 0.543376 6:+111231094 None:intergenic
GTAACAACATACTCTACTTG+AGG 0.544533 6:+111232907 None:intergenic
CTGGCAGCTGAAGGAAGAAT+CGG 0.544679 6:-111231547 MsG0680035723.01.T01:CDS
TCCGGAAACCATTGTGACAA+AGG 0.554208 6:-111231368 MsG0680035723.01.T01:CDS
TAACAACATACTCTACTTGA+GGG 0.554497 6:+111232908 None:intergenic
AGGGCACGCAGCCACTTGCA+TGG 0.557616 6:+111232927 None:intergenic
TACATCCATGACAGCAGGAT+CGG 0.561063 6:-111233027 MsG0680035723.01.T01:CDS
GCAACCAGAGCAACTGCCGA+AGG 0.564971 6:-111233063 MsG0680035723.01.T01:CDS
GTTACTGAAGACGTTCCTGA+GGG 0.568964 6:-111232889 MsG0680035723.01.T01:CDS
ATTGCTCTTTCTGAAAGTGA+AGG 0.568973 6:-111233147 MsG0680035723.01.T01:CDS
CAGAGCAACTGCCGAAGGAA+GGG 0.570180 6:-111233058 MsG0680035723.01.T01:CDS
ACAGTCCATCATCCCTGCAC+CGG 0.573161 6:+111231666 None:intergenic
GTTCTTACATCCATGACAGC+AGG 0.575669 6:-111233032 MsG0680035723.01.T01:CDS
TACATTCACGATGCACGCAT+CGG 0.579474 6:-111231520 MsG0680035723.01.T01:CDS
GCTCTTTGAAAATTTCACCT+CGG 0.580352 6:+111232965 None:intergenic
TCCGGAAGACTGGCAGCTGA+AGG 0.588358 6:-111231556 MsG0680035723.01.T01:CDS
TTCGAGAAGAAACCGGTGCA+GGG 0.595472 6:-111231678 MsG0680035723.01.T01:CDS
ATAGACACAAACTGAACCTG+TGG 0.609443 6:+111231400 None:intergenic
GGGGTTCGTGAAGAAAGAAA+CGG 0.615442 6:-111232869 MsG0680035723.01.T01:CDS
AACCAAATGTTGATTAGGCG+CGG 0.618795 6:-111230985 MsG0680035723.01.T01:three_prime_UTR
TCTTCCGGATTTCTTATCAG+CGG 0.630776 6:+111231570 None:intergenic
TTGCAGGAAATCAACAGTAG+TGG 0.637215 6:-111231725 MsG0680035723.01.T01:intron
GCAACTGCCGAAGGAAGGGT+AGG 0.649712 6:-111233054 MsG0680035723.01.T01:CDS
TGTTACTGAAGACGTTCCTG+AGG 0.653279 6:-111232890 MsG0680035723.01.T01:CDS
ATCTGTATTGAGGATACATG+AGG 0.655371 6:-111230943 MsG0680035723.01.T01:three_prime_UTR
AAAGCTCTAGCTGAAACGGA+AGG 0.659074 6:-111231640 MsG0680035723.01.T01:CDS
CAGTGTTGTAGTGAAAGACT+TGG 0.668834 6:-111231212 MsG0680035723.01.T01:CDS
TCAAAGGAAGAAGTATGCAG+CGG 0.673981 6:-111231049 MsG0680035723.01.T01:three_prime_UTR
CGATGATATAGCCATGCAAG+TGG 0.678787 6:-111232938 MsG0680035723.01.T01:CDS
TTGTAGTGAAAGACTTGGTG+AGG 0.687704 6:-111231207 MsG0680035723.01.T01:CDS
TTGGAGAGAACATTAAAGTG+CGG 0.701032 6:-111231168 MsG0680035723.01.T01:CDS
TTACTGAAGACGTTCCTGAG+GGG 0.704570 6:-111232888 MsG0680035723.01.T01:CDS
TCGAGGGTAGAATCTCAGAG+AGG 0.719030 6:-111231279 MsG0680035723.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAACTAATTTATATATAT+AGG - Chr6:111231963-111231982 MsG0680035723.01.T01:intron 10.0%
!! TTAAATATTGTTAAAATAGT+TGG - Chr6:111231827-111231846 MsG0680035723.01.T01:intron 10.0%
!! ATTTAACATAAATACAGTTT+GGG + Chr6:111231813-111231832 None:intergenic 15.0%
!! TATTTAACATAAATACAGTT+TGG + Chr6:111231814-111231833 None:intergenic 15.0%
!!! GTAATATTTGTTGAAAATTA+TGG + Chr6:111232121-111232140 None:intergenic 15.0%
!! ACACAAAATTTGAGAAAAAA+TGG - Chr6:111232259-111232278 MsG0680035723.01.T01:intron 20.0%
!! TTGAAAATTATGGAATCATA+GGG + Chr6:111232111-111232130 None:intergenic 20.0%
! ACTTTATCATTCTTGATGTA+GGG + Chr6:111231312-111231331 None:intergenic 25.0%
! GAAATCTACAAACTATATCA+GGG - Chr6:111231752-111231771 MsG0680035723.01.T01:intron 25.0%
! GAGAAAATATGAAAGTTACA+AGG - Chr6:111231373-111231392 MsG0680035723.01.T01:CDS 25.0%
! GTTGAAAATTATGGAATCAT+AGG + Chr6:111232112-111232131 None:intergenic 25.0%
! TAAAATAGTTGGAAGTTATG+TGG - Chr6:111231838-111231857 MsG0680035723.01.T01:intron 25.0%
! TATCTACTTAGGCATAATTA+CGG + Chr6:111231602-111231621 None:intergenic 25.0%
! TGAAATCTACAAACTATATC+AGG - Chr6:111231751-111231770 MsG0680035723.01.T01:intron 25.0%
! TTATTGAACTACACTTACTT+TGG + Chr6:111231541-111231560 None:intergenic 25.0%
!! AATTTTCTCTCTAATGTTCT+CGG + Chr6:111232745-111232764 None:intergenic 25.0%
!! ACAATAACCAAATGTTGATT+AGG - Chr6:111233055-111233074 MsG0680035723.01.T01:CDS 25.0%
!! ATTAGAGAGAAAATTTTCGA+GGG - Chr6:111232750-111232769 MsG0680035723.01.T01:intron 25.0%
!!! AGTATTTGTTGCATTTTCAA+AGG - Chr6:111232980-111232999 MsG0680035723.01.T01:CDS 25.0%
!!! TCAATTTTGAAACAGAAATC+TGG - Chr6:111233026-111233045 MsG0680035723.01.T01:CDS 25.0%
AAATGAGAAATTCAAGGAGT+TGG - Chr6:111232590-111232609 MsG0680035723.01.T01:intron 30.0%
AACATAAATACAGTTTGGGA+AGG + Chr6:111231809-111231828 None:intergenic 30.0%
AAGTTATGTGGAGTTAGTTA+AGG - Chr6:111231850-111231869 MsG0680035723.01.T01:intron 30.0%
ATCCTTGATCTAATTTACTC+CGG + Chr6:111231237-111231256 None:intergenic 30.0%
ATGCCTAAGTAGATATTTCT+TGG - Chr6:111231607-111231626 MsG0680035723.01.T01:CDS 30.0%
ATTAGATCAAGGATTGTTGA+AGG - Chr6:111231243-111231262 MsG0680035723.01.T01:CDS 30.0%
CAAATCATACAATCACAGTT+AGG + Chr6:111232177-111232196 None:intergenic 30.0%
CACTTTATCATTCTTGATGT+AGG + Chr6:111231313-111231332 None:intergenic 30.0%
GAATGATAAAGTGACAGTAA+AGG - Chr6:111231320-111231339 MsG0680035723.01.T01:CDS 30.0%
TAAAGTGACAGTAAAGGATA+TGG - Chr6:111231326-111231345 MsG0680035723.01.T01:CDS 30.0%
TAACAACATACTCTACTTGA+GGG + Chr6:111231140-111231159 None:intergenic 30.0%
TGAAGTGAATGAAAAAGAGT+AGG + Chr6:111231682-111231701 None:intergenic 30.0%
TGTGTCTATTGAAGATATTC+CGG - Chr6:111232659-111232678 MsG0680035723.01.T01:intron 30.0%
! ATTTTCTCTCTAATGTTCTC+GGG + Chr6:111232744-111232763 None:intergenic 30.0%
! CATTAGAGAGAAAATTTTCG+AGG - Chr6:111232749-111232768 MsG0680035723.01.T01:intron 30.0%
! TGAAAGTTACAAGGTTTGTT+CGG - Chr6:111231382-111231401 MsG0680035723.01.T01:CDS 30.0%
! TTCTTTTTCCTTTGTCACAA+TGG + Chr6:111232688-111232707 None:intergenic 30.0%
AAACAACTTCGAGAAGAAAC+CGG - Chr6:111232360-111232379 MsG0680035723.01.T01:intron 35.0%
AAATACAGTTTGGGAAGGTT+AGG + Chr6:111231804-111231823 None:intergenic 35.0%
AACCGGAGTAAATTAGATCA+AGG - Chr6:111231232-111231251 MsG0680035723.01.T01:CDS 35.0%
AAGGATAAGGAAAAGACTTG+AGG - Chr6:111231266-111231285 MsG0680035723.01.T01:CDS 35.0%
AATACAGTTTGGGAAGGTTA+GGG + Chr6:111231803-111231822 None:intergenic 35.0%
ACACTGTCATCCCTAATAAA+AGG + Chr6:111232819-111232838 None:intergenic 35.0%
ACTGATCTGTATCTGTATTG+AGG - Chr6:111233092-111233111 MsG0680035723.01.T01:CDS 35.0%
ATCTGTATTGAGGATACATG+AGG - Chr6:111233102-111233121 MsG0680035723.01.T01:CDS 35.0%
ATTGTTCAATGTTGTGTTGC+AGG - Chr6:111232304-111232323 MsG0680035723.01.T01:intron 35.0%
CAAGAGCTCCTTAGAAAAAA+AGG - Chr6:111230937-111230956 MsG0680035723.01.T01:three_prime_UTR 35.0%
CAAGCATATCTCAGGAAAAA+GGG - Chr6:111232444-111232463 MsG0680035723.01.T01:intron 35.0%
CTATAGCAAGATTAACTCGT+AGG + Chr6:111232143-111232162 None:intergenic 35.0%
GAGCCAAGAAATATCTACTT+AGG + Chr6:111231613-111231632 None:intergenic 35.0%
GTAAACTAGAGTTAGTAGCT+TGG - Chr6:111231915-111231934 MsG0680035723.01.T01:intron 35.0%
GTAACAACATACTCTACTTG+AGG + Chr6:111231141-111231160 None:intergenic 35.0%
TCAAATGTCCGTATTTGTGT+TGG + Chr6:111232222-111232241 None:intergenic 35.0%
TGGCAGAAATGAGAAATTCA+AGG - Chr6:111232584-111232603 MsG0680035723.01.T01:intron 35.0%
TTGGAGAGAACATTAAAGTG+CGG - Chr6:111232877-111232896 MsG0680035723.01.T01:CDS 35.0%
! ATTGCTCTTTCTGAAAGTGA+AGG - Chr6:111230898-111230917 MsG0680035723.01.T01:three_prime_UTR 35.0%
! CTCTTTGAAAATTTCACCTC+GGG + Chr6:111231082-111231101 None:intergenic 35.0%
! GCTCTTTGAAAATTTCACCT+CGG + Chr6:111231083-111231102 None:intergenic 35.0%
! TAAGAAAGCTCTAGCTGAAA+CGG - Chr6:111232401-111232420 MsG0680035723.01.T01:intron 35.0%
! TTAAAGTGCGGCATTTTGTT+CGG - Chr6:111232889-111232908 MsG0680035723.01.T01:CDS 35.0%
! TTTTGTGTGTACAACTAGCA+CGG + Chr6:111232247-111232266 None:intergenic 35.0%
!! AAGCATAAGAGTACTCATGA+GGG + Chr6:111232059-111232078 None:intergenic 35.0%
!! TCTAGAGCAGCCTTTTATTA+GGG - Chr6:111232806-111232825 MsG0680035723.01.T01:intron 35.0%
!!! TCGCTAAGCCTTTTTTTCTA+AGG + Chr6:111230948-111230967 None:intergenic 35.0%
!!! TTCTAGAGCAGCCTTTTATT+AGG - Chr6:111232805-111232824 MsG0680035723.01.T01:intron 35.0%
AGAAGATCTTGCGTCTAAAC+CGG - Chr6:111231215-111231234 MsG0680035723.01.T01:CDS 40.0%
AGGCAAAGTATAGCTGCTAT+TGG - Chr6:111232858-111232877 MsG0680035723.01.T01:CDS 40.0%
ATAGACACAAACTGAACCTG+TGG + Chr6:111232648-111232667 None:intergenic 40.0%
CAGTGTTGTAGTGAAAGACT+TGG - Chr6:111232833-111232852 MsG0680035723.01.T01:CDS 40.0%
CTCATTTCTGCCAACAAAGT+CGG + Chr6:111232577-111232596 None:intergenic 40.0%
GATCAAGGATTGTTGAAGGA+AGG - Chr6:111231247-111231266 MsG0680035723.01.T01:CDS 40.0%
GCAAGCATATCTCAGGAAAA+AGG - Chr6:111232443-111232462 MsG0680035723.01.T01:intron 40.0%
GGATTGTTGAAGGAAGGATA+AGG - Chr6:111231253-111231272 MsG0680035723.01.T01:CDS 40.0%
TCATCCGCTGATAAGAAATC+CGG - Chr6:111232471-111232490 MsG0680035723.01.T01:intron 40.0%
TCCTTTGTCACAATGGTTTC+CGG + Chr6:111232681-111232700 None:intergenic 40.0%
TCGAAGTTGTTTGACCAAAG+AGG + Chr6:111232352-111232371 None:intergenic 40.0%
TCTTCCGGATTTCTTATCAG+CGG + Chr6:111232478-111232497 None:intergenic 40.0%
TGATAAGAAATCCGGAAGAC+TGG - Chr6:111232479-111232498 MsG0680035723.01.T01:intron 40.0%
TTGCAGGAAATCAACAGTAG+TGG - Chr6:111232320-111232339 MsG0680035723.01.T01:intron 40.0%
! AACCAAATGTTGATTAGGCG+CGG - Chr6:111233060-111233079 MsG0680035723.01.T01:CDS 40.0%
! AACTGTGAAACCGACTTTGT+TGG - Chr6:111232564-111232583 MsG0680035723.01.T01:intron 40.0%
! CATTTTGTTCGGTTCACTCT+CGG - Chr6:111232900-111232919 MsG0680035723.01.T01:CDS 40.0%
! TACTTTGGTTCAAGTCTCCT+TGG + Chr6:111231526-111231545 None:intergenic 40.0%
! TCAAAGGAAGAAGTATGCAG+CGG - Chr6:111232996-111233015 MsG0680035723.01.T01:CDS 40.0%
!! CAAGCATAAGAGTACTCATG+AGG + Chr6:111232060-111232079 None:intergenic 40.0%
!! GGAAAGCACCAACACAAATA+CGG - Chr6:111232211-111232230 MsG0680035723.01.T01:intron 40.0%
!! TTGTAGTGAAAGACTTGGTG+AGG - Chr6:111232838-111232857 MsG0680035723.01.T01:CDS 40.0%
AAATGGCGCAAGCATATCTC+AGG - Chr6:111232436-111232455 MsG0680035723.01.T01:intron 45.0%
AACGGAAGGCGATCTTGAAA+TGG - Chr6:111232419-111232438 MsG0680035723.01.T01:intron 45.0%
AGCTGTGTGCTAAATCGTTC+AGG - Chr6:111231633-111231652 MsG0680035723.01.T01:CDS 45.0%
CGATGATATAGCCATGCAAG+TGG - Chr6:111231107-111231126 MsG0680035723.01.T01:exon 45.0%
CGCACAAACTTCAGCAAAAC+CGG - Chr6:111231461-111231480 MsG0680035723.01.T01:CDS 45.0%
GAAAACCTTGTAAGCTACGC+TGG + Chr6:111232954-111232973 None:intergenic 45.0%
GCTGTGTGCTAAATCGTTCA+GGG - Chr6:111231634-111231653 MsG0680035723.01.T01:CDS 45.0%
GGGGTTCGTGAAGAAAGAAA+CGG - Chr6:111231176-111231195 MsG0680035723.01.T01:CDS 45.0%
GGGTTTGGAAAAGAAAAGCC+AGG - Chr6:111231419-111231438 MsG0680035723.01.T01:CDS 45.0%
GGTAGAATCTCAGAGAGGTT+AGG - Chr6:111232771-111232790 MsG0680035723.01.T01:intron 45.0%
GTAAGAACCTACCCTTCCTT+CGG + Chr6:111231001-111231020 None:intergenic 45.0%
GTGCTAAATCGTTCAGGGAA+TGG - Chr6:111231639-111231658 MsG0680035723.01.T01:CDS 45.0%
GTTACTGAAGACGTTCCTGA+GGG - Chr6:111231156-111231175 MsG0680035723.01.T01:CDS 45.0%
GTTCTTACATCCATGACAGC+AGG - Chr6:111231013-111231032 MsG0680035723.01.T01:three_prime_UTR 45.0%
TACATCCATGACAGCAGGAT+CGG - Chr6:111231018-111231037 MsG0680035723.01.T01:three_prime_UTR 45.0%
TACATTCACGATGCACGCAT+CGG - Chr6:111232525-111232544 MsG0680035723.01.T01:intron 45.0%
TCCGGAAACCATTGTGACAA+AGG - Chr6:111232677-111232696 MsG0680035723.01.T01:intron 45.0%
TCTGTCACTGGAGTAGTTAC+CGG + Chr6:111231483-111231502 None:intergenic 45.0%
TGTTACTGAAGACGTTCCTG+AGG - Chr6:111231155-111231174 MsG0680035723.01.T01:CDS 45.0%
TTACTGAAGACGTTCCTGAG+GGG - Chr6:111231157-111231176 MsG0680035723.01.T01:CDS 45.0%
! AAAGCTCTAGCTGAAACGGA+AGG - Chr6:111232405-111232424 MsG0680035723.01.T01:intron 45.0%
! AGGTTTGTTCGGTTCAACCT+CGG - Chr6:111231393-111231412 MsG0680035723.01.T01:CDS 45.0%
! CGGTTTTGCTGAAGTTTGTG+CGG + Chr6:111231463-111231482 None:intergenic 45.0%
! TGATTTGTGAGCGTCAGTCT+AGG - Chr6:111232190-111232209 MsG0680035723.01.T01:intron 45.0%
AAACACCGATCCTGCTGTCA+TGG + Chr6:111231026-111231045 None:intergenic 50.0%
AGTAGTGGTCTCAGCCTCTT+TGG - Chr6:111232335-111232354 MsG0680035723.01.T01:intron 50.0%
CCATACCAGCGTAGCTTACA+AGG - Chr6:111232946-111232965 MsG0680035723.01.T01:CDS 50.0%
CCTTGTAAGCTACGCTGGTA+TGG + Chr6:111232949-111232968 None:intergenic 50.0%
CGACTTCAGCAGCAAAATCC+TGG + Chr6:111231440-111231459 None:intergenic 50.0%
CTGGCAGCTGAAGGAAGAAT+CGG - Chr6:111232498-111232517 MsG0680035723.01.T01:intron 50.0%
GGTAACTACTCCAGTGACAG+AGG - Chr6:111231482-111231501 MsG0680035723.01.T01:CDS 50.0%
GTCCGCGCCTAATCAACATT+TGG + Chr6:111233065-111233084 None:intergenic 50.0%
TCAAGTCTCCTTGGCTTCTG+CGG + Chr6:111231517-111231536 None:intergenic 50.0%
TCGAGGGTAGAATCTCAGAG+AGG - Chr6:111232766-111232785 MsG0680035723.01.T01:intron 50.0%
TCTTTCTTCACGAACCCCTC+AGG + Chr6:111231174-111231193 None:intergenic 50.0%
TGTTCTCGGGTTTCGAAGCA+AGG + Chr6:111232731-111232750 None:intergenic 50.0%
TTCGAGAAGAAACCGGTGCA+GGG - Chr6:111232367-111232386 MsG0680035723.01.T01:intron 50.0%
! GAGACAGATTTTGTCTCCCG+AGG - Chr6:111231063-111231082 MsG0680035723.01.T01:three_prime_UTR 50.0%
! TCTTTTCCAAACCCTCTCCG+AGG + Chr6:111231413-111231432 None:intergenic 50.0%
!! TGACAGCAGGATCGGTGTTT+TGG - Chr6:111231026-111231045 MsG0680035723.01.T01:three_prime_UTR 50.0%
ACAGTCCATCATCCCTGCAC+CGG + Chr6:111232382-111232401 None:intergenic 55.0%
AGAAACCGGTGCAGGGATGA+TGG - Chr6:111232374-111232393 MsG0680035723.01.T01:intron 55.0%
CAGAGCAACTGCCGAAGGAA+GGG - Chr6:111230987-111231006 MsG0680035723.01.T01:three_prime_UTR 55.0%
CTTCGAGAAGAAACCGGTGC+AGG - Chr6:111232366-111232385 MsG0680035723.01.T01:intron 55.0%
GTTCAACCTCGGAGAGGGTT+TGG - Chr6:111231404-111231423 MsG0680035723.01.T01:CDS 55.0%
GTTCGGTTCAACCTCGGAGA+GGG - Chr6:111231399-111231418 MsG0680035723.01.T01:CDS 55.0%
TCCTTCAGCTGCCAGTCTTC+CGG + Chr6:111232493-111232512 None:intergenic 55.0%
TGTTCGGTTCAACCTCGGAG+AGG - Chr6:111231398-111231417 MsG0680035723.01.T01:CDS 55.0%
! GCAAGTTGCTGCTTGTCCAC+AGG - Chr6:111232629-111232648 MsG0680035723.01.T01:intron 55.0%
CCAGAGCAACTGCCGAAGGA+AGG - Chr6:111230986-111231005 MsG0680035723.01.T01:three_prime_UTR 60.0%
CCTTCCTTCGGCAGTTGCTC+TGG + Chr6:111230989-111231008 None:intergenic 60.0%
GCAACCAGAGCAACTGCCGA+AGG - Chr6:111230982-111231001 MsG0680035723.01.T01:three_prime_UTR 60.0%
GCAACTGCCGAAGGAAGGGT+AGG - Chr6:111230991-111231010 MsG0680035723.01.T01:three_prime_UTR 60.0%
TCCGGAAGACTGGCAGCTGA+AGG - Chr6:111232489-111232508 MsG0680035723.01.T01:intron 60.0%
AGGGCACGCAGCCACTTGCA+TGG + Chr6:111231121-111231140 None:intergenic 65.0%
GCAGCAGGCTCCTCTGTCAC+TGG + Chr6:111231495-111231514 None:intergenic 65.0%
TCCTTGGCTTCTGCGGCAGC+AGG + Chr6:111231510-111231529 None:intergenic 65.0%
GCCTGCTGCCGCAGAAGCCA+AGG - Chr6:111231506-111231525 MsG0680035723.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 111230883 111233184 111230883 ID=MsG0680035723.01;Name=MsG0680035723.01
Chr6 mRNA 111230883 111233184 111230883 ID=MsG0680035723.01.T01;Parent=MsG0680035723.01;Name=MsG0680035723.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0.5|1|1|1|2|225|329
Chr6 exon 111230883 111231741 111230883 ID=MsG0680035723.01.T01:exon:14950;Parent=MsG0680035723.01.T01
Chr6 exon 111232829 111233184 111232829 ID=MsG0680035723.01.T01:exon:14949;Parent=MsG0680035723.01.T01
Chr6 CDS 111232829 111233184 111232829 ID=MsG0680035723.01.T01:cds;Parent=MsG0680035723.01.T01
Chr6 CDS 111231108 111231741 111231108 ID=MsG0680035723.01.T01:cds;Parent=MsG0680035723.01.T01
Chr6 three_prime_UTR 111230883 111231107 111230883 ID=MsG0680035723.01.T01:three_prime_utr;Parent=MsG0680035723.01.T01
Gene Sequence

>MsG0680035723.01.T01

ATGATGGAGTGCAAAATTGCTCTTTCTGAAAGTGAAGGTGACATTATCAAAGCACAAGAGCTCCTTAGAAAAAAAGGCTTAGCGAGTGCAGACAAGAAAGCAACCAGAGCAACTGCCGAAGGAAGGGTAGGTTCTTACATCCATGACAGCAGGATCGGTGTTTTGGTAGAAGTAAACTGCGAGACAGATTTTGTCTCCCGAGGTGAAATTTTCAAAGAGCTTGTCGATGATATAGCCATGCAAGTGGCTGCGTGCCCTCAAGTAGAGTATGTTGTTACTGAAGACGTTCCTGAGGGGTTCGTGAAGAAAGAAACGGAGATAGAAATGCAAAAAGAAGATCTTGCGTCTAAACCGGAGAAATCAACAGTAGTGGTCTCAGCCTCTTTGGTCAAACAACTTCGAGAAGAAACCGGTGCAGGGATGATGGACTGTAAGAAAGCTCTAGCTGAAACGGAAGGCGATCTTGAAATGGCGCAAGCATATCTCAGGAAAAAGGGTCTCTCATCCGCTGATAAGAAATCCGGAAGACTGGCAGCTGAAGGAAGAATCGGTACATACATTCACGATGCACGCATCGGTGTTCTAATTGAAGTGAACTGTGAAACCGACTTTGTTGGCAGAAATGAGAAATTCAAGGAGTTGGTTGATGATCTTGCAATGCAAGTTGCTGCTTGTCCACAGGTTCAGTTTGTGTCTATTGAAGATATTCCGGAAACCATTGTGACAAAGGAAAAAGAATTTGAGATGCAAAGAGAAGACCTTGCTTCGAAACCCGAGAACATTAGAGAGAAAATTTTCGAGGGTAGAATCTCAGAGAGGTTAGGAGAGCTTGCTCTTCTAGAGCAGCCTTTTATTAGGGATGACAGTGTTGTAGTGAAAGACTTGGTGAGGCAAAGTATAGCTGCTATTGGAGAGAACATTAAAGTGCGGCATTTTGTTCGGTTCACTCTCGGAGAAACAGTTCAAAAAGAAACAGCCATACCAGCGTAG
Protein sequence

>MsG0680035723.01.T01

MMECKIALSESEGDIIKAQELLRKKGLASADKKATRATAEGRVGSYIHDSRIGVLVEVNCETDFVSRGEIFKELVDDIAMQVAACPQVEYVVTEDVPEGFVKKETEIEMQKEDLASKPEKSTVVVSASLVKQLREETGAGMMDCKKALAETEGDLEMAQAYLRKKGLSSADKKSGRLAAEGRIGTYIHDARIGVLIEVNCETDFVGRNEKFKELVDDLAMQVAACPQVQFVSIEDIPETIVTKEKEFEMQREDLASKPENIREKIFEGRISERLGELALLEQPFIRDDSVVVKDLVRQSIAAIGENIKVRHFVRFTLGETVQKETAIPA*