AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025971.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025971.01.T01 MTR_5g037380 78.947 228 9 2 1 189 1 228 1.62e-123 348
MsG0580025971.01.T01 MTR_8g061950 49.554 224 70 3 1 183 1 222 4.78e-67 205
MsG0580025971.01.T01 MTR_7g065720 40.278 216 89 3 1 179 1 213 5.01e-47 154
MsG0580025971.01.T01 MTR_3g099757 38.967 213 93 3 1 179 1 210 1.50e-45 150
MsG0580025971.01.T01 MTR_7g065740 41.204 216 87 3 1 179 1 213 1.67e-45 150
MsG0580025971.01.T01 MTR_1g090100 37.615 218 97 3 6 187 3 217 2.20e-44 147
MsG0580025971.01.T01 MTR_7g065260 40.865 208 82 5 1 171 8 211 4.93e-44 146
MsG0580025971.01.T01 MTR_7g065660 38.605 215 93 3 1 179 1 212 3.69e-43 144
MsG0580025971.01.T01 MTR_7g065750 39.437 213 89 3 1 176 1 210 4.51e-43 144
MsG0580025971.01.T01 MTR_1g090060 36.967 211 94 3 5 179 3 210 4.73e-43 144
MsG0580025971.01.T01 MTR_1g090090 37.441 211 93 3 5 179 3 210 8.86e-43 143
MsG0580025971.01.T01 MTR_2g070110 38.249 217 97 4 4 187 3 215 1.44e-42 142
MsG0580025971.01.T01 MTR_1g115195 40.000 210 86 3 5 177 3 209 4.99e-42 140
MsG0580025971.01.T01 MTR_2g070180 40.887 203 82 6 8 176 7 205 1.22e-41 140
MsG0580025971.01.T01 MTR_4g019790 37.788 217 98 3 5 187 7 220 3.86e-41 139
MsG0580025971.01.T01 MTR_1g090070 35.455 220 102 3 5 187 9 225 4.16e-41 139
MsG0580025971.01.T01 MTR_7g065600 37.674 215 95 3 1 179 1 212 4.81e-41 138
MsG0580025971.01.T01 MTR_7g065640 39.899 198 96 5 1 179 1 194 4.90e-41 138
MsG0580025971.01.T01 MTR_2g070070 37.156 218 99 5 4 187 3 216 5.62e-41 138
MsG0580025971.01.T01 MTR_7g065590 37.674 215 95 4 1 179 1 212 1.39e-40 137
MsG0580025971.01.T01 MTR_8g087425 36.620 213 98 4 1 179 1 210 1.96e-40 137
MsG0580025971.01.T01 MTR_2g070200 38.117 223 95 6 3 189 2 217 2.88e-40 136
MsG0580025971.01.T01 MTR_2g070150 39.320 206 87 5 4 175 3 204 2.90e-40 135
MsG0580025971.01.T01 MTR_2g070060 36.697 218 100 4 4 187 3 216 1.06e-39 135
MsG0580025971.01.T01 MTR_4g019780 36.937 222 100 4 1 185 1 219 1.08e-39 135
MsG0580025971.01.T01 MTR_4g059730 34.722 216 102 2 4 183 3 215 2.07e-39 134
MsG0580025971.01.T01 MTR_7g065290 37.674 215 95 3 1 179 1 212 3.25e-39 134
MsG0580025971.01.T01 MTR_7g065630 35.909 220 100 4 2 187 22 234 5.62e-39 134
MsG0580025971.01.T01 MTR_8g087410 34.579 214 103 3 1 180 2 212 8.18e-39 132
MsG0580025971.01.T01 MTR_2g070130 38.605 215 94 6 3 183 2 212 1.34e-38 132
MsG0580025971.01.T01 MTR_7g065270 37.209 215 96 3 1 179 1 212 2.27e-38 131
MsG0580025971.01.T01 MTR_7g065710 38.498 213 89 5 1 179 1 205 1.19e-37 129
MsG0580025971.01.T01 MTR_7g065265 37.209 215 96 3 1 179 1 212 1.26e-37 129
MsG0580025971.01.T01 MTR_6g080440 37.441 211 95 3 3 179 1 208 1.35e-37 129
MsG0580025971.01.T01 MTR_7g065680 36.239 218 98 4 4 187 6 216 2.20e-37 129
MsG0580025971.01.T01 MTR_2g070210 38.785 214 91 5 4 181 3 212 5.61e-37 128
MsG0580025971.01.T01 MTR_7g065700 36.408 206 90 5 4 175 6 204 2.36e-36 126
MsG0580025971.01.T01 MTR_1g090150 35.714 210 97 2 5 179 3 209 5.45e-36 125
MsG0580025971.01.T01 MTR_2g070140 38.000 200 86 5 18 183 1 196 6.12e-36 124
MsG0580025971.01.T01 MTR_7g065230 37.198 207 86 5 1 171 1 199 8.87e-36 125
MsG0580025971.01.T01 MTR_3g467420 35.981 214 99 4 2 181 6 215 1.90e-35 124
MsG0580025971.01.T01 MTR_5g040430 31.776 214 105 3 3 177 5 216 3.04e-35 124
MsG0580025971.01.T01 MTR_3g467430 35.349 215 101 4 1 181 5 215 5.59e-35 123
MsG0580025971.01.T01 MTR_2g070120 36.190 210 96 5 4 179 3 208 1.12e-34 122
MsG0580025971.01.T01 MTR_8g056940 40.741 189 74 6 3 157 2 186 1.53e-33 119
MsG0580025971.01.T01 MTR_5g076900 34.272 213 100 5 4 181 5 212 1.25e-31 114
MsG0580025971.01.T01 MTR_5g037390 64.368 87 27 1 29 111 11 97 1.28e-30 108
MsG0580025971.01.T01 MTR_0186s0030 51.887 106 49 2 3 108 2 105 1.63e-30 108
MsG0580025971.01.T01 MTR_4g124130 34.434 212 100 6 4 180 3 210 6.83e-30 109
MsG0580025971.01.T01 MTR_2g072120 56.716 67 23 2 49 111 2 66 2.32e-19 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025971.01.T01 AT1G10370 49.099 222 73 2 1 183 1 221 1.77e-68 208
MsG0580025971.01.T01 AT1G10360 48.402 219 73 2 1 180 1 218 1.18e-65 201
MsG0580025971.01.T01 AT1G59700 44.907 216 78 3 4 179 5 219 4.79e-61 190
MsG0580025971.01.T01 AT1G59670 42.130 216 84 3 4 179 5 219 2.26e-57 180
MsG0580025971.01.T01 AT1G27130 42.342 222 84 5 1 180 1 220 4.01e-52 167
MsG0580025971.01.T01 AT1G27140 41.629 221 84 4 1 178 1 219 8.60e-50 161
MsG0580025971.01.T01 AT1G69930 40.654 214 86 2 6 180 13 224 2.04e-47 155
MsG0580025971.01.T01 AT1G69920 38.636 220 92 4 2 180 31 248 3.92e-45 150
MsG0580025971.01.T01 AT3G09270 36.986 219 101 4 4 187 5 221 2.72e-40 136
MsG0580025971.01.T01 AT2G29490 36.530 219 101 4 4 187 6 221 2.81e-40 136
MsG0580025971.01.T01 AT2G29420 34.579 214 103 3 3 182 7 217 2.45e-39 134
MsG0580025971.01.T01 AT1G78340 38.318 214 94 4 4 183 3 212 3.52e-39 133
MsG0580025971.01.T01 AT2G29470 34.862 218 103 4 6 187 8 222 3.88e-38 131
MsG0580025971.01.T01 AT1G78370 35.749 207 95 4 8 180 7 209 7.67e-38 130
MsG0580025971.01.T01 AT1G78320 38.756 209 90 4 4 178 3 207 1.05e-36 127
MsG0580025971.01.T01 AT2G29480 35.096 208 97 4 6 178 8 212 6.20e-36 125
MsG0580025971.01.T01 AT1G17170 37.321 209 94 4 4 179 3 207 7.95e-36 125
MsG0580025971.01.T01 AT1G17190 35.945 217 101 6 1 183 1 213 1.45e-35 124
MsG0580025971.01.T01 AT1G78380 36.493 211 96 4 4 180 3 209 4.82e-35 123
MsG0580025971.01.T01 AT2G29460 32.877 219 109 4 4 187 6 221 6.31e-35 122
MsG0580025971.01.T01 AT1G53680 35.849 212 96 5 8 183 10 217 6.93e-34 120
MsG0580025971.01.T01 AT1G78360 36.967 211 94 5 8 183 7 213 8.20e-34 120
MsG0580025971.01.T01 AT1G17180 35.071 211 99 5 4 180 3 209 1.78e-33 119
MsG0580025971.01.T01 AT2G29450 32.273 220 110 3 4 187 5 221 1.16e-32 117
MsG0580025971.01.T01 AT3G43800 34.703 219 105 5 1 183 1 217 2.24e-32 116
MsG0580025971.01.T01 AT2G29440 31.364 220 113 3 3 187 4 220 5.46e-31 112
MsG0580025971.01.T01 AT5G62480 30.876 217 106 3 4 178 7 221 7.46e-30 110
MsG0580025971.01.T01 AT1G74590 46.535 101 52 1 8 108 10 108 8.38e-29 107
MsG0580025971.01.T01 AT1G78320 31.579 209 78 4 4 178 3 180 2.42e-21 87.0
MsG0580025971.01.T01 AT5G62480 24.424 217 93 3 4 178 7 194 4.08e-15 70.9
MsG0580025971.01.T01 AT5G62480 23.963 217 95 3 4 178 7 195 9.37e-15 70.1

Find 44 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACAAGTTTATCAGTTTC+TGG 0.176738 5:+28388156 None:intergenic
ATCGAGCCAGTGCTAGATTT+TGG 0.182535 5:-28389765 MsG0580025971.01.T01:CDS
TACAAATGACTTAAAGCTTT+TGG 0.189237 5:-28390040 MsG0580025971.01.T01:CDS
TTTCTTTCACATAACTTAAA+AGG 0.191225 5:-28390150 MsG0580025971.01.T01:five_prime_UTR
GGCTTTGTTGATATTGCTTT+TGG 0.238595 5:-28388309 MsG0580025971.01.T01:CDS
TTGAATATATTGATCAAGTT+TGG 0.240973 5:-28389831 MsG0580025971.01.T01:CDS
AGGGTTAAAGAGAAATTTAC+TGG 0.259293 5:-28388267 MsG0580025971.01.T01:CDS
CTGAAGAAACAAATCACTTT+TGG 0.266212 5:+28389927 None:intergenic
TGCCCTTTCAATCAAAGGTT+TGG 0.302670 5:-28389980 MsG0580025971.01.T01:CDS
AAACTCCTGCTTTGGTGAAA+TGG 0.308703 5:-28388221 MsG0580025971.01.T01:CDS
GATGCTATTTGAGTTGGTTA+AGG 0.346291 5:-28388287 MsG0580025971.01.T01:CDS
AAAATCCCAGTTCTCATTCA+TGG 0.351236 5:-28389886 MsG0580025971.01.T01:CDS
ATGCTATTTGAGTTGGTTAA+GGG 0.404161 5:-28388286 MsG0580025971.01.T01:CDS
TTATCTCCATGAATGAGAAC+TGG 0.409182 5:+28389880 None:intergenic
AACTCCTGCTTTGGTGAAAT+GGG 0.410113 5:-28388220 MsG0580025971.01.T01:CDS
ATTTGTGCCCTCACTGCAAA+TGG 0.420611 5:+28390003 None:intergenic
TGCTGTTGATCCTGCTGTGA+AGG 0.420863 5:-28388187 MsG0580025971.01.T01:CDS
AATCCAAACCTTTGATTGAA+AGG 0.422743 5:+28389977 None:intergenic
ATCCAAACCTTTGATTGAAA+GGG 0.436790 5:+28389978 None:intergenic
CAAATTGCCCTTTCAATCAA+AGG 0.440999 5:-28389985 MsG0580025971.01.T01:CDS
GCATTTGAAGGAAGGATTGA+GGG 0.446813 5:+28389793 None:intergenic
GTTCAGTCCATTTGCAGTGA+GGG 0.459556 5:-28390010 MsG0580025971.01.T01:CDS
TGAAGCTAAAACTCCTGCTT+TGG 0.478097 5:-28388229 MsG0580025971.01.T01:CDS
TATTATTGCAGATTCACAAA+TGG 0.479491 5:+28389855 None:intergenic
GGCTACCTACATCGATGATA+AGG 0.485441 5:-28389743 MsG0580025971.01.T01:intron
AGTCATTTGTAGCCATCGCT+TGG 0.490420 5:+28390052 None:intergenic
TCAGCCCATTTCACCAAAGC+AGG 0.493696 5:+28388216 None:intergenic
GCTGTTGATCCTGCTGTGAA+GGG 0.509763 5:-28388186 MsG0580025971.01.T01:CDS
AGCATTTGAAGGAAGGATTG+AGG 0.510266 5:+28389792 None:intergenic
GCTCGATCATAAGCATTTGA+AGG 0.517556 5:+28389781 None:intergenic
AGAGAAATTTACTGGAGAGA+AGG 0.518055 5:-28388259 MsG0580025971.01.T01:CDS
TTCTTCTTGAAGGACTAGAC+AGG 0.522752 5:+28390115 None:intergenic
GGTAGAATTCCCTTCACAGC+AGG 0.524477 5:+28388177 None:intergenic
GATCATAAGCATTTGAAGGA+AGG 0.533721 5:+28389785 None:intergenic
AACAGCAGCAGCTATAGCTA+AGG 0.547314 5:+28388128 None:intergenic
GAACAAGAGCAGTGGAGGAA+AGG 0.556671 5:-28388354 MsG0580025971.01.T01:intron
TATCTCACATTCCTCTACTT+AGG 0.557566 5:+28388105 None:intergenic
TAATACCTTATCATCGATGT+AGG 0.558338 5:+28389738 None:intergenic
ACCAGAAACTGATAAACTTG+TGG 0.558982 5:-28388157 MsG0580025971.01.T01:CDS
TATCTCCATGAATGAGAACT+GGG 0.572303 5:+28389881 None:intergenic
GGTAGCCCAAAATCTAGCAC+TGG 0.582048 5:+28389759 None:intergenic
GGTTCAGTCCATTTGCAGTG+AGG 0.592150 5:-28390011 MsG0580025971.01.T01:CDS
ATATTTCTGATTCCAAGCGA+TGG 0.596039 5:-28390064 MsG0580025971.01.T01:exon
CTGCTGCTGTTCCTAAGTAG+AGG 0.599645 5:-28388116 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTGTTTATATAGAAAT+TGG - Chr5:28388689-28388708 MsG0580025971.01.T01:intron 10.0%
!! AATTTAAAAACCAATATATT+TGG + Chr5:28388609-28388628 None:intergenic 10.0%
!!! TTCTATATAAACAATTTTAA+AGG + Chr5:28388687-28388706 None:intergenic 10.0%
!! ATAAAATCAATTATTCTACA+CGG - Chr5:28388734-28388753 MsG0580025971.01.T01:intron 15.0%
!! TATTTAGTGTTTACTAAATA+TGG + Chr5:28389454-28389473 None:intergenic 15.0%
!!! AAAGTGTTTTTTTTTAATAG+GGG + Chr5:28388830-28388849 None:intergenic 15.0%
!!! GAAAGTGTTTTTTTTTAATA+GGG + Chr5:28388831-28388850 None:intergenic 15.0%
!!! TGATATTATTTCTCTATTTT+TGG - Chr5:28389761-28389780 MsG0580025971.01.T01:CDS 15.0%
!! AATATGGAATAATCTAAAGA+TGG + Chr5:28389438-28389457 None:intergenic 20.0%
!! CAAACCTTAATTATATTAGA+AGG + Chr5:28388762-28388781 None:intergenic 20.0%
!! CTAAAGAATAAATCCTAAAT+CGG - Chr5:28389082-28389101 MsG0580025971.01.T01:intron 20.0%
!! TAAGGTTAGTAAAATGAATA+AGG + Chr5:28388566-28388585 None:intergenic 20.0%
!! TAATCCTAAAAATTTCACTA+AGG + Chr5:28388584-28388603 None:intergenic 20.0%
!! TAGGATTAATCCAAATATAT+TGG - Chr5:28388596-28388615 MsG0580025971.01.T01:intron 20.0%
!! TTGAATATATTGATCAAGTT+TGG - Chr5:28388438-28388457 MsG0580025971.01.T01:intron 20.0%
!! TTGTATCTTATAAGAGTAAA+AGG - Chr5:28389593-28389612 MsG0580025971.01.T01:intron 20.0%
!! TTTCTTTCACATAACTTAAA+AGG - Chr5:28388119-28388138 MsG0580025971.01.T01:CDS 20.0%
!!! AAGTGTTTTTTTTTAATAGG+GGG + Chr5:28388829-28388848 None:intergenic 20.0%
!!! ATCAGAAATATTTTACTAGA+CGG + Chr5:28388196-28388215 None:intergenic 20.0%
!!! ATTGATTCAATATGATATAG+TGG + Chr5:28389742-28389761 None:intergenic 20.0%
!!! CAATAAATTTTATCAACTTC+TGG + Chr5:28389622-28389641 None:intergenic 20.0%
!!! GGAAAGTGTTTTTTTTTAAT+AGG + Chr5:28388832-28388851 None:intergenic 20.0%
!!! TTTTTTTTTCTTCTTCTTGA+AGG + Chr5:28388167-28388186 None:intergenic 20.0%
! AAGACCAGAATACAAATATT+TGG + Chr5:28389045-28389064 None:intergenic 25.0%
! GATCAAGTTTGGAAAAATAA+TGG - Chr5:28388449-28388468 MsG0580025971.01.T01:intron 25.0%
! GGTACCTTCTAATATAATTA+AGG - Chr5:28388755-28388774 MsG0580025971.01.T01:intron 25.0%
! GTTTAGTCATTGAAAAATGT+TGG - Chr5:28389146-28389165 MsG0580025971.01.T01:intron 25.0%
! TATTATTGCAGATTCACAAA+TGG + Chr5:28388417-28388436 None:intergenic 25.0%
!! ACAAATGACTTAAAGCTTTT+GGG - Chr5:28388230-28388249 MsG0580025971.01.T01:CDS 25.0%
!! ACTTTACAGTCAATTTTGTA+TGG - Chr5:28389660-28389679 MsG0580025971.01.T01:intron 25.0%
!! CGATTTAGGATTTATTCTTT+AGG + Chr5:28389084-28389103 None:intergenic 25.0%
!! CTAACCTTAGTGAAATTTTT+AGG - Chr5:28388577-28388596 MsG0580025971.01.T01:intron 25.0%
!! TACAAATGACTTAAAGCTTT+TGG - Chr5:28388229-28388248 MsG0580025971.01.T01:CDS 25.0%
!! TCAGAAATATTTTACTAGAC+GGG + Chr5:28388195-28388214 None:intergenic 25.0%
AAAACGGTGTATTTGATTGA+AGG - Chr5:28389018-28389037 MsG0580025971.01.T01:intron 30.0%
AACATAACAACATGTCAACA+TGG - Chr5:28388917-28388936 MsG0580025971.01.T01:intron 30.0%
AATCCAAACCTTTGATTGAA+AGG + Chr5:28388295-28388314 None:intergenic 30.0%
AGAACAAGAAACTTGTATGA+GGG - Chr5:28389221-28389240 MsG0580025971.01.T01:intron 30.0%
AGCAAATAAACCATTTCGTA+GGG + Chr5:28389824-28389843 None:intergenic 30.0%
AGGGTTAAAGAGAAATTTAC+TGG - Chr5:28390002-28390021 MsG0580025971.01.T01:CDS 30.0%
AGGTCCAAATATTTGTATTC+TGG - Chr5:28389038-28389057 MsG0580025971.01.T01:intron 30.0%
ATCCAAACCTTTGATTGAAA+GGG + Chr5:28388294-28388313 None:intergenic 30.0%
ATTCCTTTCAATATGAGTGA+AGG + Chr5:28388716-28388735 None:intergenic 30.0%
GATAGACTAAATCCAGAAAA+CGG - Chr5:28389002-28389021 MsG0580025971.01.T01:intron 30.0%
GGATTAGAGTAATAATAGGA+AGG + Chr5:28389378-28389397 None:intergenic 30.0%
TAATACCTTATCATCGATGT+AGG + Chr5:28388534-28388553 None:intergenic 30.0%
TAGAACAAGAAACTTGTATG+AGG - Chr5:28389220-28389239 MsG0580025971.01.T01:intron 30.0%
TCGTGCAACCTTTAATTATA+GGG + Chr5:28388892-28388911 None:intergenic 30.0%
TGATAGACCCCTATAATTAA+AGG - Chr5:28388881-28388900 MsG0580025971.01.T01:intron 30.0%
TGCAAAGAAATGTTTACTCT+CGG + Chr5:28389399-28389418 None:intergenic 30.0%
! CTGAAGAAACAAATCACTTT+TGG + Chr5:28388345-28388364 None:intergenic 30.0%
! TCTCGGATTAGAGTAATAAT+AGG + Chr5:28389382-28389401 None:intergenic 30.0%
! TTAAGGTTTGAATGCACTTT+TGG - Chr5:28388772-28388791 MsG0580025971.01.T01:intron 30.0%
!! ATGCTATTTGAGTTGGTTAA+GGG - Chr5:28389983-28390002 MsG0580025971.01.T01:CDS 30.0%
!!! ACTGGGATTTTTTTGTAAAC+AGG + Chr5:28388374-28388393 None:intergenic 30.0%
!!! CTGGGATTTTTTTGTAAACA+GGG + Chr5:28388373-28388392 None:intergenic 30.0%
!!! GATTTTTTTGTAAACAGGGT+TGG + Chr5:28388369-28388388 None:intergenic 30.0%
!!! TGGTGCAATTTTTTGCAATT+GGG - Chr5:28389781-28389800 MsG0580025971.01.T01:CDS 30.0%
!!! TTGGTGCAATTTTTTGCAAT+TGG - Chr5:28389780-28389799 MsG0580025971.01.T01:CDS 30.0%
AAAATCCCAGTTCTCATTCA+TGG - Chr5:28388383-28388402 MsG0580025971.01.T01:intron 35.0%
AAAGTTCCATTGTAACCGTA+GGG - Chr5:28389113-28389132 MsG0580025971.01.T01:intron 35.0%
ACCAGAAACTGATAAACTTG+TGG - Chr5:28390112-28390131 MsG0580025971.01.T01:five_prime_UTR 35.0%
AGAGAAATTTACTGGAGAGA+AGG - Chr5:28390010-28390029 MsG0580025971.01.T01:CDS 35.0%
CAAATTGCCCTTTCAATCAA+AGG - Chr5:28388284-28388303 MsG0580025971.01.T01:CDS 35.0%
CGTGCAACCTTTAATTATAG+GGG + Chr5:28388891-28388910 None:intergenic 35.0%
CTCGTGCAACCTTTAATTAT+AGG + Chr5:28388893-28388912 None:intergenic 35.0%
GAGCAAATAAACCATTTCGT+AGG + Chr5:28389825-28389844 None:intergenic 35.0%
GATCATAAGCATTTGAAGGA+AGG + Chr5:28388487-28388506 None:intergenic 35.0%
GTTGACATGTTGTTATGTTC+TGG + Chr5:28388916-28388935 None:intergenic 35.0%
TATCTCCATGAATGAGAACT+GGG + Chr5:28388391-28388410 None:intergenic 35.0%
TCCACAAGTTTATCAGTTTC+TGG + Chr5:28390116-28390135 None:intergenic 35.0%
TTATCTCCATGAATGAGAAC+TGG + Chr5:28388392-28388411 None:intergenic 35.0%
! AATGACTTAAAGCTTTTGGG+TGG - Chr5:28388233-28388252 MsG0580025971.01.T01:CDS 35.0%
! ACTTTGACATTAGCCGATTT+AGG + Chr5:28389098-28389117 None:intergenic 35.0%
! ATATTTCTGATTCCAAGCGA+TGG - Chr5:28388205-28388224 MsG0580025971.01.T01:CDS 35.0%
! CAATCAAATACACCGTTTTC+TGG + Chr5:28389017-28389036 None:intergenic 35.0%
!! CTTTTGGATGCTATTTGAGT+TGG - Chr5:28389976-28389995 MsG0580025971.01.T01:CDS 35.0%
!! CTTTTTGGAGGAGAGAAAAT+TGG - Chr5:28389939-28389958 MsG0580025971.01.T01:CDS 35.0%
!! GATGCTATTTGAGTTGGTTA+AGG - Chr5:28389982-28390001 MsG0580025971.01.T01:CDS 35.0%
!!! GGCTTTGTTGATATTGCTTT+TGG - Chr5:28389960-28389979 MsG0580025971.01.T01:CDS 35.0%
!!! TAAACATGTTTTGACCCCTA+CGG + Chr5:28389131-28389150 None:intergenic 35.0%
AAACTCCTGCTTTGGTGAAA+TGG - Chr5:28390048-28390067 MsG0580025971.01.T01:CDS 40.0%
AACTCCTGCTTTGGTGAAAT+GGG - Chr5:28390049-28390068 MsG0580025971.01.T01:exon 40.0%
AAGTTCCATTGTAACCGTAG+GGG - Chr5:28389114-28389133 MsG0580025971.01.T01:intron 40.0%
AGCATTTGAAGGAAGGATTG+AGG + Chr5:28388480-28388499 None:intergenic 40.0%
AGGGGTCTATCAATTGCAAA+TGG + Chr5:28388873-28388892 None:intergenic 40.0%
ATTGCTACCATGGCAAACAT+AGG + Chr5:28388801-28388820 None:intergenic 40.0%
CAAAGTTCCATTGTAACCGT+AGG - Chr5:28389112-28389131 MsG0580025971.01.T01:intron 40.0%
CAAATGGGGACAAAGTTAGA+GGG + Chr5:28388857-28388876 None:intergenic 40.0%
CTGTACAATTCCCTACGAAA+TGG - Chr5:28389811-28389830 MsG0580025971.01.T01:CDS 40.0%
GCATTTGAAGGAAGGATTGA+GGG + Chr5:28388479-28388498 None:intergenic 40.0%
GCTCGATCATAAGCATTTGA+AGG + Chr5:28388491-28388510 None:intergenic 40.0%
GGGGTCTATCAATTGCAAAT+GGG + Chr5:28388872-28388891 None:intergenic 40.0%
GGGTCTATCAATTGCAAATG+GGG + Chr5:28388871-28388890 None:intergenic 40.0%
GGTCCTTCACTCATATTGAA+AGG - Chr5:28388710-28388729 MsG0580025971.01.T01:intron 40.0%
TGAAGCTAAAACTCCTGCTT+TGG - Chr5:28390040-28390059 MsG0580025971.01.T01:CDS 40.0%
TGCCCTTTCAATCAAAGGTT+TGG - Chr5:28388289-28388308 MsG0580025971.01.T01:CDS 40.0%
TTCTTCTTGAAGGACTAGAC+AGG + Chr5:28388157-28388176 None:intergenic 40.0%
TTGCTACCATGGCAAACATA+GGG + Chr5:28388800-28388819 None:intergenic 40.0%
!! ACTTAAAGCTTTTGGGTGGT+TGG - Chr5:28388237-28388256 MsG0580025971.01.T01:CDS 40.0%
AACAGCAGCAGCTATAGCTA+AGG + Chr5:28390144-28390163 None:intergenic 45.0%
AAGAAGCCAAAATTCCGCTG+CGG + Chr5:28389174-28389193 None:intergenic 45.0%
AGTCATTTGTAGCCATCGCT+TGG + Chr5:28388220-28388239 None:intergenic 45.0%
ATTTGTGCCCTCACTGCAAA+TGG + Chr5:28388269-28388288 None:intergenic 45.0%
GATGTGTTGAACAAGAGCAG+TGG - Chr5:28389907-28389926 MsG0580025971.01.T01:CDS 45.0%
GCAAATGGGGACAAAGTTAG+AGG + Chr5:28388858-28388877 None:intergenic 45.0%
GGCTACCTACATCGATGATA+AGG - Chr5:28388526-28388545 MsG0580025971.01.T01:intron 45.0%
GTTCAGTCCATTTGCAGTGA+GGG - Chr5:28388259-28388278 MsG0580025971.01.T01:CDS 45.0%
TGCTACCATGGCAAACATAG+GGG + Chr5:28388799-28388818 None:intergenic 45.0%
TTTGACCCCTACGGTTACAA+TGG + Chr5:28389122-28389141 None:intergenic 45.0%
! ATCGAGCCAGTGCTAGATTT+TGG - Chr5:28388504-28388523 MsG0580025971.01.T01:intron 45.0%
! CAGTGGAGGAAAGGACTTTT+TGG - Chr5:28389924-28389943 MsG0580025971.01.T01:CDS 45.0%
! TAGGAAGGAGAGTACATGAG+AGG + Chr5:28389363-28389382 None:intergenic 45.0%
! TCGAGCCAGTGCTAGATTTT+GGG - Chr5:28388505-28388524 MsG0580025971.01.T01:intron 45.0%
! TGGAGGAAAGGACTTTTTGG+AGG - Chr5:28389927-28389946 MsG0580025971.01.T01:CDS 45.0%
!! AACTAGCAGAAGTGCTTGTG+AGG - Chr5:28389878-28389897 MsG0580025971.01.T01:CDS 45.0%
GAACAAGAGCAGTGGAGGAA+AGG - Chr5:28389915-28389934 MsG0580025971.01.T01:CDS 50.0%
GCTACCATGGCAAACATAGG+GGG + Chr5:28388798-28388817 None:intergenic 50.0%
GCTGTTGATCCTGCTGTGAA+GGG - Chr5:28390083-28390102 MsG0580025971.01.T01:five_prime_UTR 50.0%
GGGGGTCAAAATTGCTACCA+TGG + Chr5:28388811-28388830 None:intergenic 50.0%
GGTAGAATTCCCTTCACAGC+AGG + Chr5:28390095-28390114 None:intergenic 50.0%
GGTAGCCCAAAATCTAGCAC+TGG + Chr5:28388513-28388532 None:intergenic 50.0%
GGTTCAGTCCATTTGCAGTG+AGG - Chr5:28388258-28388277 MsG0580025971.01.T01:CDS 50.0%
GTGTTGAACAAGAGCAGTGG+AGG - Chr5:28389910-28389929 MsG0580025971.01.T01:CDS 50.0%
TCAGCCCATTTCACCAAAGC+AGG + Chr5:28390056-28390075 None:intergenic 50.0%
TGCTGTTGATCCTGCTGTGA+AGG - Chr5:28390082-28390101 MsG0580025971.01.T01:five_prime_UTR 50.0%
TGGGGACAAAGTTAGAGGGT+TGG + Chr5:28388853-28388872 None:intergenic 50.0%
!! AGCAGAAGTGCTTGTGAGGT+TGG - Chr5:28389882-28389901 MsG0580025971.01.T01:CDS 50.0%
!! GAAAAATGTTGGTGCCGCAG+CGG - Chr5:28389157-28389176 MsG0580025971.01.T01:intron 50.0%
TTGGCCCCCTATGTTTGCCA+TGG - Chr5:28388791-28388810 MsG0580025971.01.T01:intron 55.0%
!!! TTGGTGCCGCAGCGGAATTT+TGG - Chr5:28389165-28389184 MsG0580025971.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 28388119 28390172 28388119 ID=MsG0580025971.01;Name=MsG0580025971.01
Chr5 mRNA 28388119 28390172 28388119 ID=MsG0580025971.01.T01;Parent=MsG0580025971.01;Name=MsG0580025971.01.T01;_AED=0.48;_eAED=0.48;_QI=105|0|0.5|1|1|1|2|0|189
Chr5 exon 28388119 28388364 28388119 ID=MsG0580025971.01.T01:exon:7516;Parent=MsG0580025971.01.T01
Chr5 exon 28389744 28390172 28389744 ID=MsG0580025971.01.T01:exon:7515;Parent=MsG0580025971.01.T01
Chr5 five_prime_UTR 28390068 28390172 28390068 ID=MsG0580025971.01.T01:five_prime_utr;Parent=MsG0580025971.01.T01
Chr5 CDS 28389744 28390067 28389744 ID=MsG0580025971.01.T01:cds;Parent=MsG0580025971.01.T01
Chr5 CDS 28388119 28388364 28388119 ID=MsG0580025971.01.T01:cds;Parent=MsG0580025971.01.T01
Gene Sequence

>MsG0580025971.01.T01

ATGGCTACAAATGACTTAAAGCTTTTGGGTGGTTGGTTCAGTCCATTTGCAGTGAGGGCACAAATTGCCCTTTCAATCAAAGGTTTGGATTATGAGAACATTGTAGAAAACTTGAATTCCAAAAGTGATTTGTTTCTTCAGTCCAACCCTGTTTACAAAAAAATCCCAGTTCTCATTCATGGAGATAAAGCCATTTGTGAATCTGCAATAATAGTTGAATATATTGATCAAGTTTGGAAAAATAATGGTACTCCCTCAATCCTTCCTTCAAATGCTTATGATCGAGCCAGTGCTAGATTTTGGGCTACCTACATCGATGATAAGTGGAGGAAAGGACTTTTTGGAGGAGAGAAAATTGGCTTTGTTGATATTGCTTTTGGATGCTATTTGAGTTGGTTAAGGGTTAAAGAGAAATTTACTGGAGAGAAGGCTTTTGATGAAGCTAAAACTCCTGCTTTGGTGAAATGGGCTGAAGCTTTTGCTGTTGATCCTGCTGTGAAGGGAATTCTACCAGAAACTGATAAACTTGTGGAGTATGCCTTAGCTATAGCTGCTGCTGTTCCTAAGTAG

Protein sequence

>MsG0580025971.01.T01

MATNDLKLLGGWFSPFAVRAQIALSIKGLDYENIVENLNSKSDLFLQSNPVYKKIPVLIHGDKAICESAIIVEYIDQVWKNNGTPSILPSNAYDRASARFWATYIDDKWRKGLFGGEKIGFVDIAFGCYLSWLRVKEKFTGEKAFDEAKTPALVKWAEAFAVDPAVKGILPETDKLVEYALAIAAAVPK*