Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036914.01.T01 | XP_013450231.1 | 71.875 | 480 | 70 | 6 | 1 | 426 | 35 | 503 | 0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036914.01.T01 | Q7XJK8 | 34.884 | 86 | 56 | 0 | 1 | 86 | 31 | 116 | 4.64E-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036914.01.T01 | A0A072U3F6 | 71.875 | 480 | 70 | 6 | 1 | 426 | 35 | 503 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0780036914.01 | MsG0780041205.01 | PPI |
| MsG0780036914.01 | MsG0880044714.01 | PPI |
| MsG0780036914.01 | MsG0380016712.01 | PPI |
| MsG0780036914.01 | MsG0780041205.01 | PPI |
| MsG0780036914.01 | MsG0780041205.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036914.01.T01 | MTR_7g106510 | 71.875 | 480 | 70 | 6 | 1 | 426 | 35 | 503 | 0.0 | 615 |
| MsG0780036914.01.T01 | MTR_4g019670 | 70.612 | 490 | 75 | 6 | 1 | 426 | 35 | 519 | 0.0 | 608 |
| MsG0780036914.01.T01 | MTR_3g093900 | 43.237 | 414 | 180 | 9 | 1 | 382 | 35 | 425 | 7.95e-89 | 280 |
| MsG0780036914.01.T01 | MTR_3g093900 | 36.918 | 279 | 142 | 8 | 179 | 426 | 295 | 570 | 2.46e-27 | 114 |
| MsG0780036914.01.T01 | MTR_8g467500 | 54.741 | 232 | 101 | 1 | 3 | 234 | 37 | 264 | 3.09e-63 | 206 |
| MsG0780036914.01.T01 | MTR_4g032260 | 40.625 | 96 | 57 | 0 | 3 | 98 | 34 | 129 | 4.92e-17 | 78.6 |
| MsG0780036914.01.T01 | MTR_4g032290 | 32.500 | 160 | 81 | 4 | 3 | 141 | 34 | 187 | 6.99e-17 | 80.1 |
| MsG0780036914.01.T01 | MTR_3g466980 | 31.298 | 131 | 89 | 1 | 1 | 130 | 32 | 162 | 1.54e-16 | 78.6 |
| MsG0780036914.01.T01 | MTR_4g031910 | 35.938 | 128 | 72 | 2 | 3 | 126 | 34 | 155 | 4.66e-16 | 77.4 |
| MsG0780036914.01.T01 | MTR_3g466900 | 32.258 | 124 | 83 | 1 | 1 | 123 | 2 | 125 | 8.44e-16 | 74.3 |
| MsG0780036914.01.T01 | MTR_3g065100 | 36.364 | 88 | 56 | 0 | 1 | 88 | 32 | 119 | 7.13e-15 | 74.3 |
| MsG0780036914.01.T01 | MTR_3g466930 | 33.065 | 124 | 82 | 1 | 1 | 123 | 2 | 125 | 8.38e-15 | 71.2 |
| MsG0780036914.01.T01 | MTR_3g466830 | 36.134 | 119 | 75 | 1 | 3 | 120 | 33 | 151 | 1.79e-14 | 71.2 |
| MsG0780036914.01.T01 | MTR_4g032620 | 34.066 | 91 | 60 | 0 | 3 | 93 | 34 | 124 | 7.10e-14 | 71.2 |
| MsG0780036914.01.T01 | MTR_2g035610 | 35.165 | 91 | 59 | 0 | 1 | 91 | 32 | 122 | 4.37e-13 | 66.2 |
| MsG0780036914.01.T01 | MTR_3g466890 | 31.967 | 122 | 82 | 1 | 1 | 121 | 31 | 152 | 5.08e-13 | 67.0 |
| MsG0780036914.01.T01 | MTR_5g075380 | 32.812 | 128 | 82 | 4 | 3 | 128 | 34 | 159 | 5.40e-12 | 64.3 |
| MsG0780036914.01.T01 | MTR_8g036130 | 36.000 | 100 | 62 | 1 | 1 | 98 | 32 | 131 | 5.67e-12 | 65.9 |
| MsG0780036914.01.T01 | MTR_3g031240 | 29.545 | 88 | 62 | 0 | 1 | 88 | 32 | 119 | 2.94e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036914.01.T01 | AT2G40210 | 27.941 | 136 | 95 | 2 | 1 | 136 | 32 | 164 | 4.32e-14 | 73.9 |
| MsG0780036914.01.T01 | AT2G15660 | 31.852 | 135 | 85 | 5 | 6 | 137 | 30 | 160 | 5.34e-14 | 72.0 |
| MsG0780036914.01.T01 | AT1G65300 | 34.884 | 86 | 56 | 0 | 1 | 86 | 31 | 116 | 4.74e-12 | 66.6 |
| MsG0780036914.01.T01 | AT5G26630 | 31.655 | 139 | 89 | 4 | 6 | 143 | 37 | 170 | 7.03e-11 | 62.4 |
Find 85 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTCCTCAAGAAAATTT+TGG | 0.166377 | 7:+16277250 | MsG0780036914.01.T01:CDS |
| TTGACTCAAACTTGGTTATT+AGG | 0.210241 | 7:-16276242 | None:intergenic |
| TTGGCTAATCAAGCCGATTT+TGG | 0.211096 | 7:+16276753 | MsG0780036914.01.T01:CDS |
| TTGTCTCCTCAAGGCTATTT+TGG | 0.216341 | 7:+16277028 | MsG0780036914.01.T01:CDS |
| CAAAATCTTCAAAGTTAAAT+TGG | 0.246957 | 7:-16277276 | None:intergenic |
| TTTGATAACAACTTTGATAA+TGG | 0.285439 | 7:+16276780 | MsG0780036914.01.T01:CDS |
| GATGGTGATGGGGTACATTC+TGG | 0.296453 | 7:+16276579 | MsG0780036914.01.T01:CDS |
| CCAACAACCCTTGTTAGATT+TGG | 0.298734 | 7:+16276629 | MsG0780036914.01.T01:CDS |
| AGAAAATGAAGAGACTTTAA+TGG | 0.303503 | 7:+16276362 | MsG0780036914.01.T01:CDS |
| GAGGCATGTGCGGTTGTGTT+TGG | 0.334552 | 7:+16276168 | MsG0780036914.01.T01:CDS |
| ACTTTATTGACAATAATTAC+AGG | 0.378521 | 7:+16277550 | MsG0780036914.01.T01:CDS |
| AGGCATGTGCGGTTGTGTTT+GGG | 0.389221 | 7:+16276169 | MsG0780036914.01.T01:CDS |
| TTTGAAGATCAAGAAAACTT+TGG | 0.393915 | 7:+16277160 | MsG0780036914.01.T01:CDS |
| GTTATCAAAATCGCCAAAAT+CGG | 0.397560 | 7:-16276766 | None:intergenic |
| TTTGAAGTTCACGGAAACTT+TGG | 0.397952 | 7:+16277384 | MsG0780036914.01.T01:intron |
| TCTTCTAAAGTAAAAGATAT+TGG | 0.398866 | 7:-16276558 | None:intergenic |
| CTTCAACCCTGGATTTCCTT+CGG | 0.403734 | 7:+16277578 | MsG0780036914.01.T01:CDS |
| AACTATGGCGGGAATATTGA+TGG | 0.421629 | 7:+16277501 | MsG0780036914.01.T01:CDS |
| GAAAATGAAGAGACTTTAAT+GGG | 0.430958 | 7:+16276363 | MsG0780036914.01.T01:CDS |
| ATGGTGATGGGGTACATTCT+GGG | 0.432610 | 7:+16276580 | MsG0780036914.01.T01:CDS |
| GTGATACCAAGCCATCAATA+TGG | 0.435009 | 7:+16276196 | MsG0780036914.01.T01:CDS |
| CATTCTGGGGTTAACATGTA+TGG | 0.436691 | 7:+16276594 | MsG0780036914.01.T01:CDS |
| GGCGGGAATATTGATGGAGA+TGG | 0.443464 | 7:+16277507 | MsG0780036914.01.T01:CDS |
| TGTGCGGTTGTGTTTGGGCC+AGG | 0.446264 | 7:+16276174 | MsG0780036914.01.T01:CDS |
| ATATGAACACCACCATTGCT+TGG | 0.455645 | 7:-16277459 | None:intergenic |
| CCAAATCTAACAAGGGTTGT+TGG | 0.460158 | 7:-16276629 | None:intergenic |
| GTAGGAGATGGCCATATTGA+TGG | 0.460403 | 7:-16276207 | None:intergenic |
| GGAGGTCAAAGCAACTTTCA+AGG | 0.462180 | 7:+16277049 | MsG0780036914.01.T01:CDS |
| GAAGATCAAGAAAACTTTGG+AGG | 0.480766 | 7:+16277163 | MsG0780036914.01.T01:CDS |
| TTCATCAAAACAACTATGGC+GGG | 0.481653 | 7:+16277490 | MsG0780036914.01.T01:CDS |
| AGATGGCCATATTGATGGCT+TGG | 0.488355 | 7:-16276202 | None:intergenic |
| TACAGGAGCAACTTCAACCC+TGG | 0.492929 | 7:+16277567 | MsG0780036914.01.T01:CDS |
| GATGTCTAGGCATTTAGAAA+AGG | 0.494516 | 7:+16276497 | MsG0780036914.01.T01:CDS |
| ATCAATATGGCCATCTCCTA+CGG | 0.502373 | 7:+16276209 | MsG0780036914.01.T01:CDS |
| GATGGAGGAGGATTATTAAG+AGG | 0.505755 | 7:-16276528 | None:intergenic |
| TTTACTTTAGAAGATGGTGA+TGG | 0.506036 | 7:+16276567 | MsG0780036914.01.T01:CDS |
| GCGGGAATATTGATGGAGAT+GGG | 0.511752 | 7:+16277508 | MsG0780036914.01.T01:CDS |
| TTACTTTAGAAGATGGTGAT+GGG | 0.515841 | 7:+16276568 | MsG0780036914.01.T01:CDS |
| AACAACCATGGAAGTAGCAT+GGG | 0.515871 | 7:+16276687 | MsG0780036914.01.T01:CDS |
| ATGCATCAAATTGAAAATGA+AGG | 0.516317 | 7:+16276393 | MsG0780036914.01.T01:CDS |
| TAACAACTTTGATAATGGCA+TGG | 0.528915 | 7:+16276785 | MsG0780036914.01.T01:CDS |
| GAATGACATTGACTCAAACT+TGG | 0.529201 | 7:-16276250 | None:intergenic |
| CCTCCACTAACAGATCTTAG+TGG | 0.531606 | 7:+16276714 | MsG0780036914.01.T01:CDS |
| GAAGTTCACGGAAACTTTGG+AGG | 0.534452 | 7:+16277387 | MsG0780036914.01.T01:intron |
| GTATCCCCATGCTACTTCCA+TGG | 0.535942 | 7:-16276692 | None:intergenic |
| ATATTGATGGAGATGGGATG+CGG | 0.537575 | 7:+16277514 | MsG0780036914.01.T01:CDS |
| CTAACAGATCTTAGTGGTGG+TGG | 0.538898 | 7:+16276720 | MsG0780036914.01.T01:CDS |
| GTGTAGGTGTTGTCTCCTCA+AGG | 0.544400 | 7:+16277019 | MsG0780036914.01.T01:intron |
| GTTGTTCACCAAAATGGAGC+AGG | 0.556851 | 7:+16276125 | None:intergenic |
| AACAACTTTGATAATGGCAT+GGG | 0.559423 | 7:+16276786 | MsG0780036914.01.T01:CDS |
| ATTGATGGCTTGGTATCACC+TGG | 0.559804 | 7:-16276192 | None:intergenic |
| TCTTCAGCCACCGTAGGAGA+TGG | 0.560949 | 7:-16276219 | None:intergenic |
| CCACCACTAAGATCTGTTAG+TGG | 0.562274 | 7:-16276717 | None:intergenic |
| TGGTGGTGGTTGTGATAACT+TGG | 0.567708 | 7:+16276734 | MsG0780036914.01.T01:CDS |
| AGATCACTAGAAAGATGTCT+AGG | 0.570407 | 7:+16276484 | MsG0780036914.01.T01:CDS |
| AATATGGCCATCTCCTACGG+TGG | 0.571701 | 7:+16276212 | MsG0780036914.01.T01:CDS |
| TAATAATCCTCCTCCATCGT+TGG | 0.573169 | 7:+16276533 | MsG0780036914.01.T01:CDS |
| TTTCTCAACCAAATCTAACA+AGG | 0.573944 | 7:-16276637 | None:intergenic |
| ATTGGTGCCAACGATGGAGG+AGG | 0.576273 | 7:-16276540 | None:intergenic |
| TAACAACCATGGAAGTAGCA+TGG | 0.577578 | 7:+16276686 | MsG0780036914.01.T01:CDS |
| AAAGATATTGGTGCCAACGA+TGG | 0.578886 | 7:-16276546 | None:intergenic |
| TACTTTAGAAGATGGTGATG+GGG | 0.582286 | 7:+16276569 | MsG0780036914.01.T01:CDS |
| GACAATCTTATGTGGCATTG+AGG | 0.582492 | 7:+16276149 | MsG0780036914.01.T01:CDS |
| TGGTGATGGGGTACATTCTG+GGG | 0.588241 | 7:+16276581 | MsG0780036914.01.T01:CDS |
| TTTATTCCGAAGGAAATCCA+GGG | 0.595152 | 7:-16277584 | None:intergenic |
| GATATTGGTGCCAACGATGG+AGG | 0.597015 | 7:-16276543 | None:intergenic |
| TTTCATCAAAACAACTATGG+CGG | 0.600213 | 7:+16277489 | MsG0780036914.01.T01:CDS |
| TTCTCAACCAAATCTAACAA+GGG | 0.610146 | 7:-16276636 | None:intergenic |
| CATGAAAATCCAAGCAATGG+TGG | 0.610991 | 7:+16277450 | MsG0780036914.01.T01:CDS |
| CCACATGAAAATCCAAGCAA+TGG | 0.614633 | 7:+16277447 | MsG0780036914.01.T01:CDS |
| TCACCTGAAAATTCTAGTGG+TGG | 0.615267 | 7:+16276816 | MsG0780036914.01.T01:CDS |
| AAAGTTGATCAAATGAGCAG+TGG | 0.618596 | 7:+16276657 | MsG0780036914.01.T01:CDS |
| GAGCAGGTGACAATCTTATG+TGG | 0.620327 | 7:+16276141 | MsG0780036914.01.T01:CDS |
| ATTAGGTCTTCAGCCACCGT+AGG | 0.620414 | 7:-16276225 | None:intergenic |
| CCATCACCTGAAAATTCTAG+TGG | 0.626301 | 7:+16276813 | MsG0780036914.01.T01:CDS |
| TCATCACATGAAAATCATAG+TGG | 0.635133 | 7:+16276896 | MsG0780036914.01.T01:CDS |
| TTCTCATTCAGATTTGCATG+TGG | 0.650408 | 7:-16277109 | None:intergenic |
| AGTGGTTTCATTAACAACCA+TGG | 0.657021 | 7:+16276675 | MsG0780036914.01.T01:CDS |
| ATGATACATGTAGCAACATG+TGG | 0.657144 | 7:+16277418 | MsG0780036914.01.T01:CDS |
| ATGTGGCATTGAGGCATGTG+CGG | 0.658684 | 7:+16276158 | MsG0780036914.01.T01:CDS |
| ACATCATAGATAGCAGCATG+TGG | 0.662980 | 7:+16277194 | MsG0780036914.01.T01:CDS |
| CCACTAAGATCTGTTAGTGG+AGG | 0.673960 | 7:-16276714 | None:intergenic |
| TGACCTCCAAAATAGCCTTG+AGG | 0.689761 | 7:-16277034 | None:intergenic |
| CCACTAACAGATCTTAGTGG+TGG | 0.700550 | 7:+16276717 | MsG0780036914.01.T01:CDS |
| ACAACCATGGAAGTAGCATG+GGG | 0.707023 | 7:+16276688 | MsG0780036914.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTTATTGACAATAATTAC+AGG | + | Chr7:16277550-16277569 | MsG0780036914.01.T01:CDS | 20.0% |
| !! | CAAAATCTTCAAAGTTAAAT+TGG | - | Chr7:16277279-16277298 | None:intergenic | 20.0% |
| !!! | ATATCTTTTACTTTAGAAGA+TGG | + | Chr7:16276561-16276580 | MsG0780036914.01.T01:CDS | 20.0% |
| !!! | TCTTCTAAAGTAAAAGATAT+TGG | - | Chr7:16276561-16276580 | None:intergenic | 20.0% |
| !!! | TTTGATAACAACTTTGATAA+TGG | + | Chr7:16276780-16276799 | MsG0780036914.01.T01:CDS | 20.0% |
| ! | AACAAATAGGTAGCAATATT+GGG | + | Chr7:16276968-16276987 | MsG0780036914.01.T01:intron | 25.0% |
| ! | AGAAAATGAAGAGACTTTAA+TGG | + | Chr7:16276362-16276381 | MsG0780036914.01.T01:CDS | 25.0% |
| ! | ATGCATCAAATTGAAAATGA+AGG | + | Chr7:16276393-16276412 | MsG0780036914.01.T01:CDS | 25.0% |
| ! | GAAAATGAAGAGACTTTAAT+GGG | + | Chr7:16276363-16276382 | MsG0780036914.01.T01:CDS | 25.0% |
| ! | TAACAAATAGGTAGCAATAT+TGG | + | Chr7:16276967-16276986 | MsG0780036914.01.T01:intron | 25.0% |
| ! | TTTGAAGATCAAGAAAACTT+TGG | + | Chr7:16277160-16277179 | MsG0780036914.01.T01:CDS | 25.0% |
| !! | ACTTTTCATCAAAACAACTA+TGG | + | Chr7:16277486-16277505 | MsG0780036914.01.T01:CDS | 25.0% |
| !! | ATACAACATGCAAATTTTAG+TGG | + | Chr7:16277217-16277236 | MsG0780036914.01.T01:CDS | 25.0% |
| !! | TATTTGTTAATAAAATGCCC+CGG | - | Chr7:16276956-16276975 | None:intergenic | 25.0% |
| !! | TGATCTTCAAAATTTTCTTG+AGG | - | Chr7:16277151-16277170 | None:intergenic | 25.0% |
| !!! | CAAAGAAATTTTGAAGTTCA+CGG | + | Chr7:16277375-16277394 | MsG0780036914.01.T01:intron | 25.0% |
| CAATCACATGAAAATCCTAA+TGG | + | Chr7:16276994-16277013 | MsG0780036914.01.T01:intron | 30.0% | |
| GTTATCAAAATCGCCAAAAT+CGG | - | Chr7:16276769-16276788 | None:intergenic | 30.0% | |
| TATCCTCCAAAAAAGTCAAT+TGG | - | Chr7:16276302-16276321 | None:intergenic | 30.0% | |
| TCATCACATGAAAATCATAG+TGG | + | Chr7:16276896-16276915 | MsG0780036914.01.T01:CDS | 30.0% | |
| TTCTCAACCAAATCTAACAA+GGG | - | Chr7:16276639-16276658 | None:intergenic | 30.0% | |
| TTGACTCAAACTTGGTTATT+AGG | - | Chr7:16276245-16276264 | None:intergenic | 30.0% | |
| TTTCATCAAAACAACTATGG+CGG | + | Chr7:16277489-16277508 | MsG0780036914.01.T01:CDS | 30.0% | |
| TTTCTCAACCAAATCTAACA+AGG | - | Chr7:16276640-16276659 | None:intergenic | 30.0% | |
| ! | TCTTCAAAATTTTCTTGAGG+AGG | - | Chr7:16277148-16277167 | None:intergenic | 30.0% |
| ! | TTACTTTAGAAGATGGTGAT+GGG | + | Chr7:16276568-16276587 | MsG0780036914.01.T01:CDS | 30.0% |
| ! | TTGCTTCCTCAAGAAAATTT+TGG | + | Chr7:16277250-16277269 | MsG0780036914.01.T01:CDS | 30.0% |
| ! | TTTACTTTAGAAGATGGTGA+TGG | + | Chr7:16276567-16276586 | MsG0780036914.01.T01:CDS | 30.0% |
| !! | AACAACTTTGATAATGGCAT+GGG | + | Chr7:16276786-16276805 | MsG0780036914.01.T01:CDS | 30.0% |
| !! | GAAGATTTTGATAACAACAC+AGG | + | Chr7:16277289-16277308 | MsG0780036914.01.T01:CDS | 30.0% |
| !! | GCAAGATTTTGATAGTATCA+TGG | + | Chr7:16276868-16276887 | MsG0780036914.01.T01:CDS | 30.0% |
| !! | GGGGCATTTTATTAACAAAT+AGG | + | Chr7:16276955-16276974 | MsG0780036914.01.T01:intron | 30.0% |
| !! | TAACAACTTTGATAATGGCA+TGG | + | Chr7:16276785-16276804 | MsG0780036914.01.T01:CDS | 30.0% |
| !!! | ATTGACTTTTTTGGAGGATA+AGG | + | Chr7:16276302-16276321 | MsG0780036914.01.T01:CDS | 30.0% |
| !!! | TTGACTTTTTTGGAGGATAA+GGG | + | Chr7:16276303-16276322 | MsG0780036914.01.T01:CDS | 30.0% |
| !!! | TTTCTTTTTCGATCTTTGCA+AGG | - | Chr7:16276347-16276366 | None:intergenic | 30.0% |
| AGATCACTAGAAAGATGTCT+AGG | + | Chr7:16276484-16276503 | MsG0780036914.01.T01:CDS | 35.0% | |
| AGTGGTTTCATTAACAACCA+TGG | + | Chr7:16276675-16276694 | MsG0780036914.01.T01:CDS | 35.0% | |
| ATACCACCACATACAAATCA+TGG | + | Chr7:16277325-16277344 | MsG0780036914.01.T01:intron | 35.0% | |
| ATGATACATGTAGCAACATG+TGG | + | Chr7:16277418-16277437 | MsG0780036914.01.T01:CDS | 35.0% | |
| GAAGATCAAGAAAACTTTGG+AGG | + | Chr7:16277163-16277182 | MsG0780036914.01.T01:CDS | 35.0% | |
| GATGTCTAGGCATTTAGAAA+AGG | + | Chr7:16276497-16276516 | MsG0780036914.01.T01:CDS | 35.0% | |
| TCACATGAAAATCCTAATGG+TGG | + | Chr7:16276997-16277016 | MsG0780036914.01.T01:intron | 35.0% | |
| TTCATCAAAACAACTATGGC+GGG | + | Chr7:16277490-16277509 | MsG0780036914.01.T01:CDS | 35.0% | |
| TTCTCATTCAGATTTGCATG+TGG | - | Chr7:16277112-16277131 | None:intergenic | 35.0% | |
| ! | AAACCACCACTAGAATTTTC+AGG | - | Chr7:16276822-16276841 | None:intergenic | 35.0% |
| ! | AAAGTTGATCAAATGAGCAG+TGG | + | Chr7:16276657-16276676 | MsG0780036914.01.T01:CDS | 35.0% |
| ! | TACTTTAGAAGATGGTGATG+GGG | + | Chr7:16276569-16276588 | MsG0780036914.01.T01:CDS | 35.0% |
| ! | TGGTCTCCAAAATTTTCTTG+AGG | - | Chr7:16277259-16277278 | None:intergenic | 35.0% |
| ! | TTTGAAGTTCACGGAAACTT+TGG | + | Chr7:16277384-16277403 | MsG0780036914.01.T01:intron | 35.0% |
| !! | CAACATGCAAATTTTAGTGG+TGG | + | Chr7:16277220-16277239 | MsG0780036914.01.T01:CDS | 35.0% |
| !! | CAAGGTTTTGATGACATTAC+AGG | + | Chr7:16277067-16277086 | MsG0780036914.01.T01:CDS | 35.0% |
| !! | GAATGACATTGACTCAAACT+TGG | - | Chr7:16276253-16276272 | None:intergenic | 35.0% |
| !!! | GACTGACCAATTGACTTTTT+TGG | + | Chr7:16276293-16276312 | MsG0780036914.01.T01:CDS | 35.0% |
| !!! | TGACCAATTGACTTTTTTGG+AGG | + | Chr7:16276296-16276315 | MsG0780036914.01.T01:CDS | 35.0% |
| AACAACCATGGAAGTAGCAT+GGG | + | Chr7:16276687-16276706 | MsG0780036914.01.T01:CDS | 40.0% | |
| ACATCATAGATAGCAGCATG+TGG | + | Chr7:16277194-16277213 | MsG0780036914.01.T01:CDS | 40.0% | |
| ACCACATACAAATCATGGTG+TGG | + | Chr7:16277330-16277349 | MsG0780036914.01.T01:intron | 40.0% | |
| ATATGAACACCACCATTGCT+TGG | - | Chr7:16277462-16277481 | None:intergenic | 40.0% | |
| ATATTGATGGAGATGGGATG+CGG | + | Chr7:16277514-16277533 | MsG0780036914.01.T01:CDS | 40.0% | |
| ATCAATATGGCCATCTCCTA+CGG | + | Chr7:16276209-16276228 | MsG0780036914.01.T01:CDS | 40.0% | |
| CATGAAAATCCAAGCAATGG+TGG | + | Chr7:16277450-16277469 | MsG0780036914.01.T01:CDS | 40.0% | |
| CATGATATGTTTCTTCCTCG+TGG | + | Chr7:16276926-16276945 | MsG0780036914.01.T01:intron | 40.0% | |
| CCAAATCTAACAAGGGTTGT+TGG | - | Chr7:16276632-16276651 | None:intergenic | 40.0% | |
| CCAACAACCCTTGTTAGATT+TGG | + | Chr7:16276629-16276648 | MsG0780036914.01.T01:CDS | 40.0% | |
| CCACATGAAAATCCAAGCAA+TGG | + | Chr7:16277447-16277466 | MsG0780036914.01.T01:CDS | 40.0% | |
| CCATCACCTGAAAATTCTAG+TGG | + | Chr7:16276813-16276832 | MsG0780036914.01.T01:CDS | 40.0% | |
| GACAATCTTATGTGGCATTG+AGG | + | Chr7:16276149-16276168 | MsG0780036914.01.T01:CDS | 40.0% | |
| GATGGAGGAGGATTATTAAG+AGG | - | Chr7:16276531-16276550 | None:intergenic | 40.0% | |
| GTGATACCAAGCCATCAATA+TGG | + | Chr7:16276196-16276215 | MsG0780036914.01.T01:CDS | 40.0% | |
| TAACAACCATGGAAGTAGCA+TGG | + | Chr7:16276686-16276705 | MsG0780036914.01.T01:CDS | 40.0% | |
| TAATAATCCTCCTCCATCGT+TGG | + | Chr7:16276533-16276552 | MsG0780036914.01.T01:CDS | 40.0% | |
| TCACCTGAAAATTCTAGTGG+TGG | + | Chr7:16276816-16276835 | MsG0780036914.01.T01:CDS | 40.0% | |
| ! | AACTATGGCGGGAATATTGA+TGG | + | Chr7:16277501-16277520 | MsG0780036914.01.T01:CDS | 40.0% |
| ! | ACACCATGATTTGTATGTGG+TGG | - | Chr7:16277331-16277350 | None:intergenic | 40.0% |
| ! | ACCACACCATGATTTGTATG+TGG | - | Chr7:16277334-16277353 | None:intergenic | 40.0% |
| ! | CCATTGCTTGGATTTTCATG+TGG | - | Chr7:16277450-16277469 | None:intergenic | 40.0% |
| ! | GAAAATCCTAATGGTGGTGT+AGG | + | Chr7:16277003-16277022 | MsG0780036914.01.T01:intron | 40.0% |
| ! | TTGCTTGGATTTTCATGTGG+AGG | - | Chr7:16277447-16277466 | None:intergenic | 40.0% |
| ! | TTGTCTCCTCAAGGCTATTT+TGG | + | Chr7:16277028-16277047 | MsG0780036914.01.T01:CDS | 40.0% |
| !! | AAAGATATTGGTGCCAACGA+TGG | - | Chr7:16276549-16276568 | None:intergenic | 40.0% |
| !! | CATTCTGGGGTTAACATGTA+TGG | + | Chr7:16276594-16276613 | MsG0780036914.01.T01:CDS | 40.0% |
| !! | TTGGCTAATCAAGCCGATTT+TGG | + | Chr7:16276753-16276772 | MsG0780036914.01.T01:CDS | 40.0% |
| !!! | CCACTAGAATTTTCAGGTGA+TGG | - | Chr7:16276816-16276835 | None:intergenic | 40.0% |
| ACAACACCTACACCACCATT+AGG | - | Chr7:16277012-16277031 | None:intergenic | 45.0% | |
| ACAACCATGGAAGTAGCATG+GGG | + | Chr7:16276688-16276707 | MsG0780036914.01.T01:CDS | 45.0% | |
| CCACCACTAAGATCTGTTAG+TGG | - | Chr7:16276720-16276739 | None:intergenic | 45.0% | |
| CCACTAACAGATCTTAGTGG+TGG | + | Chr7:16276717-16276736 | MsG0780036914.01.T01:CDS | 45.0% | |
| CCACTAAGATCTGTTAGTGG+AGG | - | Chr7:16276717-16276736 | None:intergenic | 45.0% | |
| CCTCCACTAACAGATCTTAG+TGG | + | Chr7:16276714-16276733 | MsG0780036914.01.T01:CDS | 45.0% | |
| CTAACAGATCTTAGTGGTGG+TGG | + | Chr7:16276720-16276739 | MsG0780036914.01.T01:CDS | 45.0% | |
| CTTCAACCCTGGATTTCCTT+CGG | + | Chr7:16277578-16277597 | MsG0780036914.01.T01:CDS | 45.0% | |
| GAAGTTCACGGAAACTTTGG+AGG | + | Chr7:16277387-16277406 | MsG0780036914.01.T01:intron | 45.0% | |
| GAGCAGGTGACAATCTTATG+TGG | + | Chr7:16276141-16276160 | MsG0780036914.01.T01:CDS | 45.0% | |
| GCGGGAATATTGATGGAGAT+GGG | + | Chr7:16277508-16277527 | MsG0780036914.01.T01:CDS | 45.0% | |
| GGAGGTCAAAGCAACTTTCA+AGG | + | Chr7:16277049-16277068 | MsG0780036914.01.T01:CDS | 45.0% | |
| GTAGGAGATGGCCATATTGA+TGG | - | Chr7:16276210-16276229 | None:intergenic | 45.0% | |
| GTTTCTTCCTCGTGGAAATC+CGG | + | Chr7:16276934-16276953 | MsG0780036914.01.T01:intron | 45.0% | |
| TTTCTTCCTCGTGGAAATCC+GGG | + | Chr7:16276935-16276954 | MsG0780036914.01.T01:intron | 45.0% | |
| ! | AGATGGCCATATTGATGGCT+TGG | - | Chr7:16276205-16276224 | None:intergenic | 45.0% |
| ! | TGACCTCCAAAATAGCCTTG+AGG | - | Chr7:16277037-16277056 | None:intergenic | 45.0% |
| !! | ATGGTGATGGGGTACATTCT+GGG | + | Chr7:16276580-16276599 | MsG0780036914.01.T01:CDS | 45.0% |
| !! | ATTGATGGCTTGGTATCACC+TGG | - | Chr7:16276195-16276214 | None:intergenic | 45.0% |
| !! | TCTCCTCAAGGCTATTTTGG+AGG | + | Chr7:16277031-16277050 | MsG0780036914.01.T01:CDS | 45.0% |
| !! | TGGTGGTGGTTGTGATAACT+TGG | + | Chr7:16276734-16276753 | MsG0780036914.01.T01:CDS | 45.0% |
| AATATGGCCATCTCCTACGG+TGG | + | Chr7:16276212-16276231 | MsG0780036914.01.T01:CDS | 50.0% | |
| AGGCATGTGCGGTTGTGTTT+GGG | + | Chr7:16276169-16276188 | MsG0780036914.01.T01:CDS | 50.0% | |
| ATTAGGTCTTCAGCCACCGT+AGG | - | Chr7:16276228-16276247 | None:intergenic | 50.0% | |
| GGCGGGAATATTGATGGAGA+TGG | + | Chr7:16277507-16277526 | MsG0780036914.01.T01:CDS | 50.0% | |
| TACAGGAGCAACTTCAACCC+TGG | + | Chr7:16277567-16277586 | MsG0780036914.01.T01:CDS | 50.0% | |
| TTCTTCCTCGTGGAAATCCG+GGG | + | Chr7:16276936-16276955 | MsG0780036914.01.T01:intron | 50.0% | |
| ! | ATGTGGCATTGAGGCATGTG+CGG | + | Chr7:16276158-16276177 | MsG0780036914.01.T01:CDS | 50.0% |
| ! | GTATCCCCATGCTACTTCCA+TGG | - | Chr7:16276695-16276714 | None:intergenic | 50.0% |
| ! | GTGTAGGTGTTGTCTCCTCA+AGG | + | Chr7:16277019-16277038 | MsG0780036914.01.T01:intron | 50.0% |
| !! | GATATTGGTGCCAACGATGG+AGG | - | Chr7:16276546-16276565 | None:intergenic | 50.0% |
| !! | GATGGTGATGGGGTACATTC+TGG | + | Chr7:16276579-16276598 | MsG0780036914.01.T01:CDS | 50.0% |
| !! | TGGTGATGGGGTACATTCTG+GGG | + | Chr7:16276581-16276600 | MsG0780036914.01.T01:CDS | 50.0% |
| AAATGCCCCGGATTTCCACG+AGG | - | Chr7:16276944-16276963 | None:intergenic | 55.0% | |
| GAGGCATGTGCGGTTGTGTT+TGG | + | Chr7:16276168-16276187 | MsG0780036914.01.T01:CDS | 55.0% | |
| TCTTCAGCCACCGTAGGAGA+TGG | - | Chr7:16276222-16276241 | None:intergenic | 55.0% | |
| !! | ATTGGTGCCAACGATGGAGG+AGG | - | Chr7:16276543-16276562 | None:intergenic | 55.0% |
| TGTGCGGTTGTGTTTGGGCC+AGG | + | Chr7:16276174-16276193 | MsG0780036914.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 16276138 | 16277605 | 16276138 | ID=MsG0780036914.01;Name=MsG0780036914.01 |
| Chr7 | mRNA | 16276138 | 16277605 | 16276138 | ID=MsG0780036914.01.T01;Parent=MsG0780036914.01;Name=MsG0780036914.01.T01;_AED=0.09;_eAED=0.13;_QI=0|0|0|1|1|1|3|0|426 |
| Chr7 | exon | 16276138 | 16276917 | 16276138 | ID=MsG0780036914.01.T01:exon:25473;Parent=MsG0780036914.01.T01 |
| Chr7 | exon | 16277025 | 16277310 | 16277025 | ID=MsG0780036914.01.T01:exon:25474;Parent=MsG0780036914.01.T01 |
| Chr7 | exon | 16277391 | 16277605 | 16277391 | ID=MsG0780036914.01.T01:exon:25475;Parent=MsG0780036914.01.T01 |
| Chr7 | CDS | 16276138 | 16276917 | 16276138 | ID=MsG0780036914.01.T01:cds;Parent=MsG0780036914.01.T01 |
| Chr7 | CDS | 16277025 | 16277310 | 16277025 | ID=MsG0780036914.01.T01:cds;Parent=MsG0780036914.01.T01 |
| Chr7 | CDS | 16277391 | 16277605 | 16277391 | ID=MsG0780036914.01.T01:cds;Parent=MsG0780036914.01.T01 |
| Gene Sequence |
| Protein sequence |
