Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037715.01.T01 | KEH22226.1 | 79.897 | 194 | 24 | 2 | 14 | 192 | 366 | 559 | 1.44E-99 | 313 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037715.01.T01 | Q9MB42 | 72.68 | 194 | 38 | 2 | 14 | 192 | 431 | 624 | 2.97E-91 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037715.01.T01 | A0A072TYF7 | 79.897 | 194 | 24 | 2 | 14 | 192 | 366 | 559 | 6.86e-100 | 313 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580025832.01 | MsG0780037715.01 | 0.802161 | 6.398241e-49 | 3.112115e-46 |
| MsG0780037642.01 | MsG0780037715.01 | 0.865480 | 5.729556e-65 | 1.866878e-61 |
| MsG0780037678.01 | MsG0780037715.01 | 0.843534 | 1.321171e-58 | 2.073282e-55 |
| MsG0780037715.01 | MsG0780037716.01 | 0.849808 | 2.549283e-60 | 4.891181e-57 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037715.01.T01 | MTR_7g034535 | 79.897 | 194 | 24 | 2 | 14 | 192 | 366 | 559 | 1.74e-103 | 313 |
| MsG0780037715.01.T01 | MTR_4g005190 | 70.619 | 194 | 42 | 2 | 14 | 192 | 431 | 624 | 1.77e-89 | 276 |
| MsG0780037715.01.T01 | MTR_3g436160 | 70.681 | 191 | 41 | 2 | 14 | 189 | 370 | 560 | 5.35e-89 | 275 |
| MsG0780037715.01.T01 | MTR_4g005190 | 70.619 | 194 | 42 | 2 | 14 | 192 | 431 | 624 | 7.64e-89 | 276 |
| MsG0780037715.01.T01 | MTR_4g005270 | 68.557 | 194 | 46 | 2 | 14 | 192 | 431 | 624 | 3.13e-86 | 269 |
| MsG0780037715.01.T01 | MTR_0013s0230 | 68.912 | 193 | 45 | 2 | 15 | 192 | 432 | 624 | 2.61e-84 | 264 |
| MsG0780037715.01.T01 | MTR_8g016975 | 65.464 | 194 | 52 | 1 | 14 | 192 | 431 | 624 | 3.74e-83 | 261 |
| MsG0780037715.01.T01 | MTR_8g017020 | 63.918 | 194 | 55 | 2 | 14 | 192 | 397 | 590 | 2.50e-81 | 256 |
| MsG0780037715.01.T01 | MTR_8g016960 | 61.111 | 198 | 55 | 3 | 14 | 192 | 425 | 619 | 4.41e-79 | 250 |
| MsG0780037715.01.T01 | MTR_6g034985 | 50.239 | 209 | 84 | 3 | 2 | 190 | 411 | 619 | 1.31e-64 | 212 |
| MsG0780037715.01.T01 | MTR_6g093180 | 49.524 | 210 | 86 | 2 | 1 | 190 | 410 | 619 | 1.39e-63 | 209 |
| MsG0780037715.01.T01 | MTR_6g035010 | 52.910 | 189 | 74 | 2 | 17 | 190 | 431 | 619 | 5.95e-61 | 202 |
| MsG0780037715.01.T01 | MTR_5g008810 | 51.042 | 192 | 79 | 2 | 14 | 190 | 429 | 620 | 2.85e-58 | 195 |
| MsG0780037715.01.T01 | MTR_7g062020 | 45.146 | 206 | 95 | 3 | 3 | 190 | 426 | 631 | 6.22e-52 | 177 |
| MsG0780037715.01.T01 | MTR_6g088140 | 45.146 | 206 | 95 | 3 | 3 | 190 | 399 | 604 | 4.32e-49 | 169 |
| MsG0780037715.01.T01 | MTR_6g088140 | 45.146 | 206 | 95 | 3 | 3 | 190 | 399 | 604 | 7.72e-49 | 169 |
| MsG0780037715.01.T01 | MTR_6g093100 | 43.458 | 214 | 95 | 4 | 3 | 190 | 425 | 638 | 6.05e-46 | 161 |
| MsG0780037715.01.T01 | MTR_8g016940 | 58.333 | 132 | 42 | 2 | 74 | 192 | 2 | 133 | 9.11e-46 | 152 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037715.01.T01 | AT1G78955 | 55.670 | 194 | 71 | 1 | 14 | 192 | 257 | 450 | 3.05e-70 | 224 |
| MsG0780037715.01.T01 | AT1G78955 | 55.670 | 194 | 71 | 1 | 14 | 192 | 367 | 560 | 6.47e-70 | 223 |
| MsG0780037715.01.T01 | AT1G78955 | 55.670 | 194 | 71 | 1 | 14 | 192 | 367 | 560 | 1.52e-69 | 223 |
| MsG0780037715.01.T01 | AT1G78950 | 58.854 | 192 | 64 | 2 | 14 | 190 | 432 | 623 | 2.06e-69 | 225 |
| MsG0780037715.01.T01 | AT1G78955 | 55.670 | 194 | 71 | 1 | 14 | 192 | 367 | 560 | 2.21e-69 | 224 |
| MsG0780037715.01.T01 | AT1G78950 | 58.854 | 192 | 64 | 2 | 14 | 190 | 441 | 632 | 2.34e-69 | 225 |
| MsG0780037715.01.T01 | AT1G78955 | 55.670 | 194 | 71 | 1 | 14 | 192 | 432 | 625 | 5.16e-69 | 224 |
| MsG0780037715.01.T01 | AT1G78970 | 52.133 | 211 | 81 | 3 | 2 | 192 | 412 | 622 | 3.38e-68 | 221 |
| MsG0780037715.01.T01 | AT1G78970 | 52.133 | 211 | 81 | 3 | 2 | 192 | 412 | 622 | 3.38e-68 | 221 |
| MsG0780037715.01.T01 | AT1G78970 | 52.133 | 211 | 81 | 3 | 2 | 192 | 412 | 622 | 3.38e-68 | 221 |
| MsG0780037715.01.T01 | AT1G78960 | 54.922 | 193 | 72 | 2 | 15 | 192 | 282 | 474 | 9.58e-67 | 215 |
| MsG0780037715.01.T01 | AT1G66960 | 56.216 | 185 | 66 | 1 | 23 | 192 | 450 | 634 | 1.57e-66 | 217 |
| MsG0780037715.01.T01 | AT1G66960 | 56.216 | 185 | 66 | 1 | 23 | 192 | 441 | 625 | 1.65e-66 | 217 |
| MsG0780037715.01.T01 | AT1G66960 | 56.216 | 185 | 66 | 1 | 23 | 192 | 441 | 625 | 1.65e-66 | 217 |
| MsG0780037715.01.T01 | AT1G66960 | 56.216 | 185 | 66 | 1 | 23 | 192 | 441 | 625 | 1.65e-66 | 217 |
| MsG0780037715.01.T01 | AT1G78960 | 54.922 | 193 | 72 | 2 | 15 | 192 | 433 | 625 | 1.07e-65 | 214 |
| MsG0780037715.01.T01 | AT1G78960 | 54.922 | 193 | 72 | 2 | 15 | 192 | 433 | 625 | 1.37e-65 | 214 |
| MsG0780037715.01.T01 | AT1G78960 | 54.922 | 193 | 72 | 2 | 15 | 192 | 433 | 625 | 1.37e-65 | 214 |
| MsG0780037715.01.T01 | AT1G78960 | 54.922 | 193 | 72 | 2 | 15 | 192 | 433 | 625 | 1.37e-65 | 214 |
| MsG0780037715.01.T01 | AT2G07050 | 49.479 | 192 | 82 | 2 | 14 | 190 | 338 | 529 | 8.65e-58 | 192 |
| MsG0780037715.01.T01 | AT5G48010 | 46.842 | 190 | 82 | 2 | 18 | 190 | 441 | 628 | 9.45e-58 | 194 |
| MsG0780037715.01.T01 | AT1G78500 | 47.340 | 188 | 84 | 1 | 18 | 190 | 442 | 629 | 2.36e-57 | 192 |
| MsG0780037715.01.T01 | AT1G78500 | 47.340 | 188 | 84 | 1 | 18 | 190 | 442 | 629 | 2.36e-57 | 192 |
| MsG0780037715.01.T01 | AT2G07050 | 49.479 | 192 | 82 | 2 | 14 | 190 | 429 | 620 | 2.71e-57 | 192 |
| MsG0780037715.01.T01 | AT4G15340 | 49.735 | 189 | 76 | 2 | 19 | 190 | 442 | 628 | 3.78e-57 | 192 |
| MsG0780037715.01.T01 | AT4G15370 | 48.352 | 182 | 86 | 2 | 17 | 190 | 442 | 623 | 1.81e-56 | 190 |
| MsG0780037715.01.T01 | AT4G15370 | 48.352 | 182 | 86 | 2 | 17 | 190 | 439 | 620 | 1.83e-56 | 190 |
| MsG0780037715.01.T01 | AT5G36150 | 44.974 | 189 | 89 | 2 | 17 | 190 | 435 | 623 | 1.99e-53 | 182 |
| MsG0780037715.01.T01 | AT5G36150 | 44.974 | 189 | 89 | 2 | 17 | 190 | 435 | 623 | 1.99e-53 | 182 |
| MsG0780037715.01.T01 | AT5G48010 | 46.409 | 181 | 88 | 3 | 18 | 190 | 441 | 620 | 1.42e-51 | 177 |
| MsG0780037715.01.T01 | AT3G29255 | 43.915 | 189 | 91 | 2 | 17 | 190 | 381 | 569 | 2.20e-51 | 176 |
| MsG0780037715.01.T01 | AT5G42600 | 40.741 | 189 | 97 | 2 | 17 | 190 | 436 | 624 | 3.79e-47 | 164 |
| MsG0780037715.01.T01 | AT3G45130 | 43.750 | 192 | 93 | 2 | 14 | 190 | 429 | 620 | 1.28e-41 | 149 |
| MsG0780037715.01.T01 | AT3G45130 | 43.750 | 192 | 93 | 2 | 14 | 190 | 429 | 620 | 1.28e-41 | 149 |
| MsG0780037715.01.T01 | AT3G45130 | 43.750 | 192 | 93 | 2 | 14 | 190 | 429 | 620 | 1.28e-41 | 149 |
| MsG0780037715.01.T01 | AT3G45130 | 43.750 | 192 | 93 | 2 | 14 | 190 | 429 | 620 | 1.37e-41 | 149 |
| MsG0780037715.01.T01 | AT3G45130 | 43.750 | 192 | 93 | 2 | 14 | 190 | 429 | 620 | 1.37e-41 | 149 |
| MsG0780037715.01.T01 | AT4G15340 | 44.531 | 128 | 52 | 2 | 19 | 129 | 442 | 567 | 2.85e-28 | 110 |
Find 72 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGAATTTGCTTCATTTA+TGG | 0.192754 | 7:-31856363 | MsG0780037715.01.T01:CDS |
| TTTCATTCTTGCAGGGTAAA+AGG | 0.210250 | 7:-31856733 | MsG0780037715.01.T01:intron |
| CACAAACTTATTGAAGAAAT+TGG | 0.250257 | 7:-31857526 | MsG0780037715.01.T01:CDS |
| ATAACTAAAGCTTGAATTGC+TGG | 0.340316 | 7:+31856498 | None:intergenic |
| GCCAATCACCCTCTTCCAAC+TGG | 0.347244 | 7:+31855618 | None:intergenic |
| TTTGTACAACATTTGATTGT+TGG | 0.359225 | 7:+31856073 | None:intergenic |
| TGGTTCATGGTATGGAAGTT+GGG | 0.361550 | 7:-31856382 | MsG0780037715.01.T01:CDS |
| ATCTCTTTCTTCCTATGCTC+TGG | 0.363167 | 7:+31856459 | None:intergenic |
| CCCAGTTGGAAGAGGGTGAT+TGG | 0.374695 | 7:-31855619 | MsG0780037715.01.T01:three_prime_UTR |
| TATGTTCCATTGTCTTCCAC+TGG | 0.389336 | 7:-31855131 | MsG0780037715.01.T01:three_prime_UTR |
| ACAAAGAGAGGATGGTGGTT+GGG | 0.397928 | 7:-31856248 | MsG0780037715.01.T01:three_prime_UTR |
| ATGGTTCATGGTATGGAAGT+TGG | 0.403489 | 7:-31856383 | MsG0780037715.01.T01:CDS |
| TTCATTCTTGCAGGGTAAAA+GGG | 0.437768 | 7:-31856732 | MsG0780037715.01.T01:intron |
| CTCATGAGTTTAATTTATGC+TGG | 0.439245 | 7:-31856039 | MsG0780037715.01.T01:three_prime_UTR |
| GGTAGCCAAGAATGGGATGC+TGG | 0.444230 | 7:-31857573 | None:intergenic |
| AAAAGGGTGGTATGCCATCA+TGG | 0.448537 | 7:-31856716 | MsG0780037715.01.T01:CDS |
| GCTCGTGCCGGCTCCCATGA+TGG | 0.450509 | 7:+31856702 | None:intergenic |
| CAATTTCTTCAATAAGTTTG+TGG | 0.455963 | 7:+31857527 | None:intergenic |
| ATAGAGATATTTCCCATTGT+GGG | 0.457853 | 7:-31855174 | MsG0780037715.01.T01:three_prime_UTR |
| GTTACGAATAGCAACAGAAT+TGG | 0.459020 | 7:+31856294 | None:intergenic |
| CAAAGAGAGGATGGTGGTTG+GGG | 0.465183 | 7:-31856247 | MsG0780037715.01.T01:three_prime_UTR |
| AGAGATTGTGGGTGAAAAGA+TGG | 0.466261 | 7:-31856937 | MsG0780037715.01.T01:CDS |
| CTTAATGAAATCATGTCCTC+TGG | 0.468515 | 7:+31857492 | None:intergenic |
| AAAGATGATGGTTCATGGTA+TGG | 0.471672 | 7:-31856390 | MsG0780037715.01.T01:CDS |
| GAGTTTAATTTATGCTGGCC+AGG | 0.472869 | 7:-31856034 | MsG0780037715.01.T01:intron |
| ATGCATCGTCATATTTCTAA+AGG | 0.486909 | 7:-31857141 | MsG0780037715.01.T01:CDS |
| AACCATTCTTGAGCTCGTGC+CGG | 0.489934 | 7:+31856690 | None:intergenic |
| CTTGGTGGATTAGCAGCTGC+TGG | 0.492984 | 7:-31856328 | MsG0780037715.01.T01:exon |
| TATTTATTGTAGGGAATCAC+AGG | 0.496137 | 7:-31855235 | MsG0780037715.01.T01:intron |
| ATGTTCCATTGTCTTCCACT+GGG | 0.501307 | 7:-31855130 | MsG0780037715.01.T01:three_prime_UTR |
| CATCAATTCCCAGTTGGAAG+AGG | 0.502190 | 7:-31855627 | MsG0780037715.01.T01:three_prime_UTR |
| CAGGTTAGGGACAACCCATC+AGG | 0.506799 | 7:-31857177 | MsG0780037715.01.T01:CDS |
| TGATTTCATTAAGAAATCTC+AGG | 0.511905 | 7:-31857482 | MsG0780037715.01.T01:intron |
| TATAGAGATATTTCCCATTG+TGG | 0.519245 | 7:-31855175 | MsG0780037715.01.T01:three_prime_UTR |
| TGGTATGCCATCATGGGAGC+CGG | 0.523148 | 7:-31856709 | MsG0780037715.01.T01:CDS |
| ACTCAGCTAAAGCCCACAAT+GGG | 0.529293 | 7:+31855162 | None:intergenic |
| CAAATGTTGTACAAACTGCA+TGG | 0.533252 | 7:-31856065 | MsG0780037715.01.T01:three_prime_UTR |
| CACAAAGAGAGGATGGTGGT+TGG | 0.535338 | 7:-31856249 | MsG0780037715.01.T01:three_prime_UTR |
| AAATGTTGTACAAACTGCAT+GGG | 0.536757 | 7:-31856064 | MsG0780037715.01.T01:three_prime_UTR |
| AGCCGGCACGAGCTCAAGAA+TGG | 0.544550 | 7:-31856692 | MsG0780037715.01.T01:intron |
| TACTCTTAAAATCTCCTGAT+GGG | 0.544976 | 7:+31857163 | None:intergenic |
| TATGAGTATGTTGAGTGCAC+TGG | 0.545103 | 7:-31856522 | MsG0780037715.01.T01:CDS |
| CCAATCACCCTCTTCCAACT+GGG | 0.547783 | 7:+31855619 | None:intergenic |
| CAGCACGATGAAGAGGAGTA+AGG | 0.552188 | 7:+31855660 | None:intergenic |
| TCTCTGATCAAGACCATGGA+TGG | 0.553082 | 7:-31857107 | MsG0780037715.01.T01:CDS |
| ATACTCTTAAAATCTCCTGA+TGG | 0.554329 | 7:+31857162 | None:intergenic |
| GTAGCCAAGAATGGGATGCT+GGG | 0.555547 | 7:-31857572 | None:intergenic |
| AATCAGAAACTTGCCATCCA+TGG | 0.558868 | 7:+31857094 | None:intergenic |
| ATTTCTCATCAATTCCCAGT+TGG | 0.563375 | 7:-31855633 | MsG0780037715.01.T01:three_prime_UTR |
| GTTTCTGATTGCACCGCAGA+TGG | 0.563530 | 7:-31857081 | MsG0780037715.01.T01:CDS |
| GGTTCATGGTATGGAAGTTG+GGG | 0.567893 | 7:-31856381 | MsG0780037715.01.T01:CDS |
| AAAGGGTGGTATGCCATCAT+GGG | 0.569198 | 7:-31856715 | MsG0780037715.01.T01:CDS |
| GTCATATTTCTAAAGGCTCG+TGG | 0.569948 | 7:-31857134 | MsG0780037715.01.T01:CDS |
| GATTGTTGGCTTTCTTCAAG+AGG | 0.581272 | 7:+31856087 | None:intergenic |
| TCTTCTCACAACACAAAGAG+AGG | 0.584977 | 7:-31856260 | MsG0780037715.01.T01:three_prime_UTR |
| ATCAATTCCCAGTTGGAAGA+GGG | 0.587110 | 7:-31855626 | MsG0780037715.01.T01:three_prime_UTR |
| CTCACAACACAAAGAGAGGA+TGG | 0.591101 | 7:-31856256 | MsG0780037715.01.T01:three_prime_UTR |
| ATTTACCTTCAGACCATCTG+CGG | 0.595501 | 7:+31857068 | None:intergenic |
| TCATGTCCTCTGGCAAGTGA+AGG | 0.597460 | 7:+31857502 | None:intergenic |
| AATGTTGCCTCCAGAGATTG+TGG | 0.602295 | 7:-31856949 | MsG0780037715.01.T01:CDS |
| TACTCAGCTAAAGCCCACAA+TGG | 0.603816 | 7:+31855161 | None:intergenic |
| ATAAGCTATATCCAGAGCAT+AGG | 0.604185 | 7:-31856470 | MsG0780037715.01.T01:CDS |
| GTGAAAAGATGGAACTAGAG+AGG | 0.605404 | 7:-31856926 | MsG0780037715.01.T01:intron |
| ATTCTTGCAGGGTAAAAGGG+TGG | 0.634141 | 7:-31856729 | MsG0780037715.01.T01:intron |
| ATGTTGCCTCCAGAGATTGT+GGG | 0.635342 | 7:-31856948 | MsG0780037715.01.T01:CDS |
| TTGCACCGCAGATGGTCTGA+AGG | 0.640126 | 7:-31857073 | MsG0780037715.01.T01:intron |
| ACTTTCTCTGATCAAGACCA+TGG | 0.645283 | 7:-31857111 | MsG0780037715.01.T01:CDS |
| TGTTCCATTGTCTTCCACTG+GGG | 0.645805 | 7:-31855129 | MsG0780037715.01.T01:three_prime_UTR |
| TTAACCCCAGTGGAAGACAA+TGG | 0.667469 | 7:+31855125 | None:intergenic |
| ATTGGTCCTTCACTTGCCAG+AGG | 0.678032 | 7:-31857508 | MsG0780037715.01.T01:CDS |
| AATGTTGTACAAACTGCATG+GGG | 0.691397 | 7:-31856063 | MsG0780037715.01.T01:three_prime_UTR |
| ACAACACAAAGAGAGGATGG+TGG | 0.742113 | 7:-31856253 | MsG0780037715.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATTTGTCTTAAAATT+TGG | + | Chr7:31855224-31855243 | None:intergenic | 10.0% |
| !!! | AATTAGTTTATATTAAATCT+GGG | + | Chr7:31855994-31856013 | None:intergenic | 10.0% |
| !!! | AATTTTGTTTATTTATTGTA+GGG | - | Chr7:31857355-31857374 | MsG0780037715.01.T01:intron | 10.0% |
| !!! | TAATTAGTTTATATTAAATC+TGG | + | Chr7:31855995-31856014 | None:intergenic | 10.0% |
| !!! | TAATTTTGTTTATTTATTGT+AGG | - | Chr7:31857354-31857373 | MsG0780037715.01.T01:intron | 10.0% |
| !! | AAATAAAGCATAAATTTCAT+TGG | + | Chr7:31855400-31855419 | None:intergenic | 15.0% |
| !! | AATACATCAATGAAAATATA+GGG | + | Chr7:31855759-31855778 | None:intergenic | 15.0% |
| !! | TACTTAAATATTAAATAACG+AGG | - | Chr7:31857025-31857044 | MsG0780037715.01.T01:intron | 15.0% |
| !!! | GCATTTAATTATATTTTTCT+TGG | + | Chr7:31857240-31857259 | None:intergenic | 15.0% |
| !!! | TAATTTTCGTAAATTAAAGA+AGG | + | Chr7:31855179-31855198 | None:intergenic | 15.0% |
| !! | ACTTTCTAATTCTTGTATAT+AGG | - | Chr7:31856906-31856925 | MsG0780037715.01.T01:intron | 20.0% |
| !! | ATAAAGAAAACAAAACATTG+TGG | - | Chr7:31857141-31857160 | MsG0780037715.01.T01:CDS | 20.0% |
| !! | CAATACATCAATGAAAATAT+AGG | + | Chr7:31855760-31855779 | None:intergenic | 20.0% |
| !! | TAAAGAAAACAAAACATTGT+GGG | - | Chr7:31857142-31857161 | MsG0780037715.01.T01:CDS | 20.0% |
| !! | TTAAGATTCATTTGCATTTA+TGG | + | Chr7:31856869-31856888 | None:intergenic | 20.0% |
| !!! | AAATTTATGCTTTATTTCAC+AGG | - | Chr7:31855403-31855422 | MsG0780037715.01.T01:intron | 20.0% |
| !!! | ATAATTATTATTTACTGGCT+TGG | + | Chr7:31855267-31855286 | None:intergenic | 20.0% |
| !!! | TAAATTGAGTTTTGATTTCA+TGG | + | Chr7:31857276-31857295 | None:intergenic | 20.0% |
| ! | AGTATTAATTAACATGAACC+TGG | + | Chr7:31857009-31857028 | None:intergenic | 25.0% |
| ! | ATGCAAATGAATCTTAACAT+TGG | - | Chr7:31856872-31856891 | MsG0780037715.01.T01:intron | 25.0% |
| ! | CAATACCGAAATTGATATAT+AGG | - | Chr7:31857069-31857088 | MsG0780037715.01.T01:intron | 25.0% |
| ! | CAATTTCTTCAATAAGTTTG+TGG | + | Chr7:31855075-31855094 | None:intergenic | 25.0% |
| ! | CACAAACTTATTGAAGAAAT+TGG | - | Chr7:31855073-31855092 | MsG0780037715.01.T01:three_prime_UTR | 25.0% |
| ! | GTATTAATTAACATGAACCT+GGG | + | Chr7:31857008-31857027 | None:intergenic | 25.0% |
| ! | TAAATCACCAATAAACTCTT+TGG | - | Chr7:31855602-31855621 | MsG0780037715.01.T01:intron | 25.0% |
| ! | TATTAATTAACATGAACCTG+GGG | + | Chr7:31857007-31857026 | None:intergenic | 25.0% |
| ! | TCCTTCCTATATATCAATTT+CGG | + | Chr7:31857077-31857096 | None:intergenic | 25.0% |
| ! | TGATTTCATTAAGAAATCTC+AGG | - | Chr7:31855117-31855136 | MsG0780037715.01.T01:three_prime_UTR | 25.0% |
| ! | TGCATTTATGGTAATAATTG+TGG | + | Chr7:31856857-31856876 | None:intergenic | 25.0% |
| ! | TTTGTACAACATTTGATTGT+TGG | + | Chr7:31856529-31856548 | None:intergenic | 25.0% |
| !! | TAACTCTGTTATTTATTTGC+AGG | - | Chr7:31856013-31856032 | MsG0780037715.01.T01:intron | 25.0% |
| !! | TATTGATTATACAATGCTAC+TGG | + | Chr7:31857124-31857143 | None:intergenic | 25.0% |
| !!! | AACTCAATATGAACCTTTTT+TGG | + | Chr7:31856397-31856416 | None:intergenic | 25.0% |
| !!! | ACTCAATATGAACCTTTTTT+GGG | + | Chr7:31856396-31856415 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTCATTCTTGCA+GGG | - | Chr7:31855859-31855878 | MsG0780037715.01.T01:intron | 25.0% |
| AAATGTTGTACAAACTGCAT+GGG | - | Chr7:31856535-31856554 | MsG0780037715.01.T01:CDS | 30.0% | |
| ACCGAAATTGATATATAGGA+AGG | - | Chr7:31857073-31857092 | MsG0780037715.01.T01:intron | 30.0% | |
| ATAACTAAAGCTTGAATTGC+TGG | + | Chr7:31856104-31856123 | None:intergenic | 30.0% | |
| ATACTCTTAAAATCTCCTGA+TGG | + | Chr7:31855440-31855459 | None:intergenic | 30.0% | |
| ATAGAGATATTTCCCATTGT+GGG | - | Chr7:31857425-31857444 | MsG0780037715.01.T01:intron | 30.0% | |
| ATTAATTAACATGAACCTGG+GGG | + | Chr7:31857006-31857025 | None:intergenic | 30.0% | |
| ATTAGCACACATATTGTTCA+AGG | + | Chr7:31855370-31855389 | None:intergenic | 30.0% | |
| ATTGATTAGTAGAACTTTCC+TGG | + | Chr7:31855731-31855750 | None:intergenic | 30.0% | |
| ATTGTGAGCTAAGCATAAAT+AGG | + | Chr7:31857053-31857072 | None:intergenic | 30.0% | |
| CGTAAATTAAAGAAGGAGAA+CGG | + | Chr7:31855172-31855191 | None:intergenic | 30.0% | |
| GAAGATACACAAAAAGATGA+TGG | - | Chr7:31856197-31856216 | MsG0780037715.01.T01:intron | 30.0% | |
| GTATGCTCTTCATGAATTAA+AGG | - | Chr7:31856587-31856606 | MsG0780037715.01.T01:intron | 30.0% | |
| TAAATTAATCGCTACACAAG+TGG | + | Chr7:31857183-31857202 | None:intergenic | 30.0% | |
| TACAATGTCTGCGAAAAATT+CGG | + | Chr7:31856051-31856070 | None:intergenic | 30.0% | |
| TACTCTTAAAATCTCCTGAT+GGG | + | Chr7:31855439-31855458 | None:intergenic | 30.0% | |
| TATAGAGATATTTCCCATTG+TGG | - | Chr7:31857424-31857443 | MsG0780037715.01.T01:intron | 30.0% | |
| TATTTATTGTAGGGAATCAC+AGG | - | Chr7:31857364-31857383 | MsG0780037715.01.T01:intron | 30.0% | |
| TGAAACACCAAAGAGTTTAT+TGG | + | Chr7:31855612-31855631 | None:intergenic | 30.0% | |
| ! | ATGCATCGTCATATTTCTAA+AGG | - | Chr7:31855458-31855477 | MsG0780037715.01.T01:intron | 30.0% |
| ! | CATCTTTTTGTGTATCTTCA+AGG | + | Chr7:31856196-31856215 | None:intergenic | 30.0% |
| ! | CTCATGAGTTTAATTTATGC+TGG | - | Chr7:31856560-31856579 | MsG0780037715.01.T01:CDS | 30.0% |
| !! | ATGCTTTATTTCACAGGTTA+GGG | - | Chr7:31855409-31855428 | MsG0780037715.01.T01:intron | 30.0% |
| !! | TATGCTTTATTTCACAGGTT+AGG | - | Chr7:31855408-31855427 | MsG0780037715.01.T01:intron | 30.0% |
| !!! | CTTTTTTCTTTCATTCTTGC+AGG | - | Chr7:31855858-31855877 | MsG0780037715.01.T01:intron | 30.0% |
| !!! | TTATGGTACTTTTTTGCTCT+TGG | - | Chr7:31856253-31856272 | MsG0780037715.01.T01:three_prime_UTR | 30.0% |
| AATGTTGTACAAACTGCATG+GGG | - | Chr7:31856536-31856555 | MsG0780037715.01.T01:CDS | 35.0% | |
| ACTTTGTCAAGACACTCTAA+TGG | - | Chr7:31857211-31857230 | MsG0780037715.01.T01:intron | 35.0% | |
| ATAAGCTATATCCAGAGCAT+AGG | - | Chr7:31856129-31856148 | MsG0780037715.01.T01:intron | 35.0% | |
| ATTCTTTAACTAATGCCCTG+AGG | + | Chr7:31856650-31856669 | None:intergenic | 35.0% | |
| ATTTCTCATCAATTCCCAGT+TGG | - | Chr7:31856966-31856985 | MsG0780037715.01.T01:CDS | 35.0% | |
| CAAATGTTGTACAAACTGCA+TGG | - | Chr7:31856534-31856553 | MsG0780037715.01.T01:CDS | 35.0% | |
| CTATCTTTCATGCCCAAAAA+AGG | - | Chr7:31856381-31856400 | MsG0780037715.01.T01:CDS | 35.0% | |
| CTTAATGAAATCATGTCCTC+TGG | + | Chr7:31855110-31855129 | None:intergenic | 35.0% | |
| CTTAGTTAGTGTTCATCATC+AGG | - | Chr7:31855344-31855363 | MsG0780037715.01.T01:intron | 35.0% | |
| CTTTGTCAAGACACTCTAAT+GGG | - | Chr7:31857212-31857231 | MsG0780037715.01.T01:intron | 35.0% | |
| GAAAACAAAACATTGTGGGT+AGG | - | Chr7:31857146-31857165 | MsG0780037715.01.T01:CDS | 35.0% | |
| GTTACGAATAGCAACAGAAT+TGG | + | Chr7:31856308-31856327 | None:intergenic | 35.0% | |
| TTCATTCTTGCAGGGTAAAA+GGG | - | Chr7:31855867-31855886 | MsG0780037715.01.T01:intron | 35.0% | |
| TTCTTTAACTAATGCCCTGA+GGG | + | Chr7:31856649-31856668 | None:intergenic | 35.0% | |
| TTTCATTCTTGCAGGGTAAA+AGG | - | Chr7:31855866-31855885 | MsG0780037715.01.T01:intron | 35.0% | |
| TTTGTCAAGACACTCTAATG+GGG | - | Chr7:31857213-31857232 | MsG0780037715.01.T01:intron | 35.0% | |
| ! | AAAGATGATGGTTCATGGTA+TGG | - | Chr7:31856209-31856228 | MsG0780037715.01.T01:intron | 35.0% |
| ! | AACTGGTTCTCACTCAAATT+AGG | - | Chr7:31856827-31856846 | MsG0780037715.01.T01:intron | 35.0% |
| ! | CACAAAAAGATGATGGTTCA+TGG | - | Chr7:31856204-31856223 | MsG0780037715.01.T01:intron | 35.0% |
| ! | TAATTCATGAAGAGCATACC+TGG | + | Chr7:31856586-31856605 | None:intergenic | 35.0% |
| ! | TGGGGAATTTGCTTCATTTA+TGG | - | Chr7:31856236-31856255 | MsG0780037715.01.T01:three_prime_UTR | 35.0% |
| !!! | TTTTTCAAGTTTAACCCCAG+TGG | + | Chr7:31857487-31857506 | None:intergenic | 35.0% |
| AAATATCCTCTGCACACAAC+TGG | - | Chr7:31856810-31856829 | MsG0780037715.01.T01:intron | 40.0% | |
| AATCAGAAACTTGCCATCCA+TGG | + | Chr7:31855508-31855527 | None:intergenic | 40.0% | |
| AATGATAACCAGTGCCTCAA+GGG | + | Chr7:31856775-31856794 | None:intergenic | 40.0% | |
| AATGTCTGCGAAAAATTCGG+TGG | + | Chr7:31856048-31856067 | None:intergenic | 40.0% | |
| ACTTTCTCTGATCAAGACCA+TGG | - | Chr7:31855488-31855507 | MsG0780037715.01.T01:intron | 40.0% | |
| AGAGATTGTGGGTGAAAAGA+TGG | - | Chr7:31855662-31855681 | MsG0780037715.01.T01:three_prime_UTR | 40.0% | |
| AGTTGTGTGCAGAGGATATT+TGG | + | Chr7:31856811-31856830 | None:intergenic | 40.0% | |
| ATCAATTCCCAGTTGGAAGA+GGG | - | Chr7:31856973-31856992 | MsG0780037715.01.T01:intron | 40.0% | |
| ATCTCTTTCTTCCTATGCTC+TGG | + | Chr7:31856143-31856162 | None:intergenic | 40.0% | |
| ATGGTTCATGGTATGGAAGT+TGG | - | Chr7:31856216-31856235 | MsG0780037715.01.T01:intron | 40.0% | |
| ATGTCTGCGAAAAATTCGGT+GGG | + | Chr7:31856047-31856066 | None:intergenic | 40.0% | |
| ATGTTCCATTGTCTTCCACT+GGG | - | Chr7:31857469-31857488 | MsG0780037715.01.T01:intron | 40.0% | |
| ATGTTTAACCATTGCCCTTG+AGG | - | Chr7:31856758-31856777 | MsG0780037715.01.T01:intron | 40.0% | |
| ATTTACCTTCAGACCATCTG+CGG | + | Chr7:31855534-31855553 | None:intergenic | 40.0% | |
| GTGAAAAGATGGAACTAGAG+AGG | - | Chr7:31855673-31855692 | MsG0780037715.01.T01:three_prime_UTR | 40.0% | |
| TATGAGTATGTTGAGTGCAC+TGG | - | Chr7:31856077-31856096 | MsG0780037715.01.T01:three_prime_UTR | 40.0% | |
| TATGTTCCATTGTCTTCCAC+TGG | - | Chr7:31857468-31857487 | MsG0780037715.01.T01:intron | 40.0% | |
| TCTTCTCACAACACAAAGAG+AGG | - | Chr7:31856339-31856358 | MsG0780037715.01.T01:CDS | 40.0% | |
| TGGTTCATGGTATGGAAGTT+GGG | - | Chr7:31856217-31856236 | MsG0780037715.01.T01:intron | 40.0% | |
| ! | AATTTTGCAGCACGATGAAG+AGG | + | Chr7:31856949-31856968 | None:intergenic | 40.0% |
| ! | ATCTTTTCACCCACAATCTC+TGG | + | Chr7:31855663-31855682 | None:intergenic | 40.0% |
| ! | GAGTTTAATTTATGCTGGCC+AGG | - | Chr7:31856565-31856584 | MsG0780037715.01.T01:CDS | 40.0% |
| ! | GTCATATTTCTAAAGGCTCG+TGG | - | Chr7:31855465-31855484 | MsG0780037715.01.T01:intron | 40.0% |
| !! | GATTGTTGGCTTTCTTCAAG+AGG | + | Chr7:31856515-31856534 | None:intergenic | 40.0% |
| !!! | TGGTACTTTTTTGCTCTTGG+TGG | - | Chr7:31856256-31856275 | MsG0780037715.01.T01:three_prime_UTR | 40.0% |
| AAAAGGGTGGTATGCCATCA+TGG | - | Chr7:31855883-31855902 | MsG0780037715.01.T01:intron | 45.0% | |
| AAAGGGTGGTATGCCATCAT+GGG | - | Chr7:31855884-31855903 | MsG0780037715.01.T01:intron | 45.0% | |
| AATGTTGCCTCCAGAGATTG+TGG | - | Chr7:31855650-31855669 | MsG0780037715.01.T01:three_prime_UTR | 45.0% | |
| ACAACACAAAGAGAGGATGG+TGG | - | Chr7:31856346-31856365 | MsG0780037715.01.T01:CDS | 45.0% | |
| ACTCAGCTAAAGCCCACAAT+GGG | + | Chr7:31857440-31857459 | None:intergenic | 45.0% | |
| ATGTTGCCTCCAGAGATTGT+GGG | - | Chr7:31855651-31855670 | MsG0780037715.01.T01:three_prime_UTR | 45.0% | |
| ATTCTTGCAGGGTAAAAGGG+TGG | - | Chr7:31855870-31855889 | MsG0780037715.01.T01:intron | 45.0% | |
| CATCAATTCCCAGTTGGAAG+AGG | - | Chr7:31856972-31856991 | MsG0780037715.01.T01:intron | 45.0% | |
| CTCACAACACAAAGAGAGGA+TGG | - | Chr7:31856343-31856362 | MsG0780037715.01.T01:CDS | 45.0% | |
| GAATGATAACCAGTGCCTCA+AGG | + | Chr7:31856776-31856795 | None:intergenic | 45.0% | |
| GGTTCATGGTATGGAAGTTG+GGG | - | Chr7:31856218-31856237 | MsG0780037715.01.T01:intron | 45.0% | |
| TACTCAGCTAAAGCCCACAA+TGG | + | Chr7:31857441-31857460 | None:intergenic | 45.0% | |
| TCTCTGATCAAGACCATGGA+TGG | - | Chr7:31855492-31855511 | MsG0780037715.01.T01:intron | 45.0% | |
| TGTTCCATTGTCTTCCACTG+GGG | - | Chr7:31857470-31857489 | MsG0780037715.01.T01:intron | 45.0% | |
| TTAACCCCAGTGGAAGACAA+TGG | + | Chr7:31857477-31857496 | None:intergenic | 45.0% | |
| ! | ACAAAGAGAGGATGGTGGTT+GGG | - | Chr7:31856351-31856370 | MsG0780037715.01.T01:CDS | 45.0% |
| ! | TTTTCACCCACAATCTCTGG+AGG | + | Chr7:31855660-31855679 | None:intergenic | 45.0% |
| !! | ACAAAATTAAAATTAATAAT+AGG | + | Chr7:31857343-31857362 | None:intergenic | 5.0% |
| !! | TAATTATAATTATTATTTAC+TGG | + | Chr7:31855272-31855291 | None:intergenic | 5.0% |
| AACCATTCTTGAGCTCGTGC+CGG | + | Chr7:31855912-31855931 | None:intergenic | 50.0% | |
| AACTTTCCTGGAGCGACAAC+AGG | + | Chr7:31855719-31855738 | None:intergenic | 50.0% | |
| ATTGGTCCTTCACTTGCCAG+AGG | - | Chr7:31855091-31855110 | MsG0780037715.01.T01:three_prime_UTR | 50.0% | |
| CAGCACGATGAAGAGGAGTA+AGG | + | Chr7:31856942-31856961 | None:intergenic | 50.0% | |
| CCAATCACCCTCTTCCAACT+GGG | + | Chr7:31856983-31857002 | None:intergenic | 50.0% | |
| GTTTCTGATTGCACCGCAGA+TGG | - | Chr7:31855518-31855537 | MsG0780037715.01.T01:intron | 50.0% | |
| TCATGTCCTCTGGCAAGTGA+AGG | + | Chr7:31855100-31855119 | None:intergenic | 50.0% | |
| TGAGAACCAGTTGTGTGCAG+AGG | + | Chr7:31856819-31856838 | None:intergenic | 50.0% | |
| ! | CAAAGAGAGGATGGTGGTTG+GGG | - | Chr7:31856352-31856371 | MsG0780037715.01.T01:CDS | 50.0% |
| ! | CACAAAGAGAGGATGGTGGT+TGG | - | Chr7:31856350-31856369 | MsG0780037715.01.T01:CDS | 50.0% |
| AACCAGTGCCTCAAGGGCAA+TGG | + | Chr7:31856769-31856788 | None:intergenic | 55.0% | |
| AACCATTGCCCTTGAGGCAC+TGG | - | Chr7:31856764-31856783 | MsG0780037715.01.T01:intron | 55.0% | |
| CAATCTCCTGTTGTCGCTCC+AGG | - | Chr7:31855710-31855729 | MsG0780037715.01.T01:intron | 55.0% | |
| CAGGTTAGGGACAACCCATC+AGG | - | Chr7:31855422-31855441 | MsG0780037715.01.T01:intron | 55.0% | |
| CCCAGTTGGAAGAGGGTGAT+TGG | - | Chr7:31856980-31856999 | MsG0780037715.01.T01:intron | 55.0% | |
| CTTGCTAACCAGTGCCCTCA+GGG | - | Chr7:31856632-31856651 | MsG0780037715.01.T01:intron | 55.0% | |
| GCCAATCACCCTCTTCCAAC+TGG | + | Chr7:31856984-31857003 | None:intergenic | 55.0% | |
| TCTTGCTAACCAGTGCCCTC+AGG | - | Chr7:31856631-31856650 | MsG0780037715.01.T01:intron | 55.0% | |
| TGGTATGCCATCATGGGAGC+CGG | - | Chr7:31855890-31855909 | MsG0780037715.01.T01:intron | 55.0% | |
| TTGCACCGCAGATGGTCTGA+AGG | - | Chr7:31855526-31855545 | MsG0780037715.01.T01:intron | 55.0% | |
| ! | AACTAATGCCCTGAGGGCAC+TGG | + | Chr7:31856643-31856662 | None:intergenic | 55.0% |
| !! | CTTGGTGGATTAGCAGCTGC+TGG | - | Chr7:31856271-31856290 | MsG0780037715.01.T01:three_prime_UTR | 55.0% |
| AGCCGGCACGAGCTCAAGAA+TGG | - | Chr7:31855907-31855926 | MsG0780037715.01.T01:intron | 60.0% | |
| ! | GAAGAGGGTGATTGGCCCCC+AGG | - | Chr7:31856988-31857007 | MsG0780037715.01.T01:intron | 65.0% |
| !! | GCTCGTGCCGGCTCCCATGA+TGG | + | Chr7:31855900-31855919 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 31855037 | 31857584 | 31855037 | ID=MsG0780037715.01;Name=MsG0780037715.01 |
| Chr7 | mRNA | 31855037 | 31857584 | 31855037 | ID=MsG0780037715.01.T01;Parent=MsG0780037715.01;Name=MsG0780037715.01.T01;_AED=0.15;_eAED=0.18;_QI=0|0.57|0.5|1|0.57|0.5|8|494|194 |
| Chr7 | exon | 31857483 | 31857584 | 31857483 | ID=MsG0780037715.01.T01:exon:1157;Parent=MsG0780037715.01.T01 |
| Chr7 | exon | 31857074 | 31857196 | 31857074 | ID=MsG0780037715.01.T01:exon:1158;Parent=MsG0780037715.01.T01 |
| Chr7 | exon | 31856927 | 31856988 | 31856927 | ID=MsG0780037715.01.T01:exon:1159;Parent=MsG0780037715.01.T01 |
| Chr7 | exon | 31856693 | 31856741 | 31856693 | ID=MsG0780037715.01.T01:exon:1160;Parent=MsG0780037715.01.T01 |
| Chr7 | exon | 31856219 | 31856586 | 31856219 | ID=MsG0780037715.01.T01:exon:1161;Parent=MsG0780037715.01.T01 |
| Chr7 | exon | 31856035 | 31856118 | 31856035 | ID=MsG0780037715.01.T01:exon:1162;Parent=MsG0780037715.01.T01 |
| Chr7 | exon | 31855612 | 31855693 | 31855612 | ID=MsG0780037715.01.T01:exon:1163;Parent=MsG0780037715.01.T01 |
| Chr7 | exon | 31855037 | 31855245 | 31855037 | ID=MsG0780037715.01.T01:exon:1164;Parent=MsG0780037715.01.T01 |
| Chr7 | CDS | 31857483 | 31857584 | 31857483 | ID=MsG0780037715.01.T01:cds;Parent=MsG0780037715.01.T01 |
| Chr7 | CDS | 31857074 | 31857196 | 31857074 | ID=MsG0780037715.01.T01:cds;Parent=MsG0780037715.01.T01 |
| Chr7 | CDS | 31856927 | 31856988 | 31856927 | ID=MsG0780037715.01.T01:cds;Parent=MsG0780037715.01.T01 |
| Chr7 | CDS | 31856693 | 31856741 | 31856693 | ID=MsG0780037715.01.T01:cds;Parent=MsG0780037715.01.T01 |
| Chr7 | CDS | 31856338 | 31856586 | 31856338 | ID=MsG0780037715.01.T01:cds;Parent=MsG0780037715.01.T01 |
| Chr7 | three_prime_UTR | 31856219 | 31856337 | 31856219 | ID=MsG0780037715.01.T01:three_prime_utr;Parent=MsG0780037715.01.T01 |
| Chr7 | three_prime_UTR | 31856035 | 31856118 | 31856035 | ID=MsG0780037715.01.T01:three_prime_utr;Parent=MsG0780037715.01.T01 |
| Chr7 | three_prime_UTR | 31855612 | 31855693 | 31855612 | ID=MsG0780037715.01.T01:three_prime_utr;Parent=MsG0780037715.01.T01 |
| Chr7 | three_prime_UTR | 31855037 | 31855245 | 31855037 | ID=MsG0780037715.01.T01:three_prime_utr;Parent=MsG0780037715.01.T01 |
| Gene Sequence |
| Protein sequence |
