AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038629.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038629.01.T01 MTR_7g058900 99.095 221 2 0 1 221 1 221 4.19e-164 451
MsG0780038629.01.T01 MTR_1g047720 80.365 219 43 0 1 219 1 219 5.53e-139 388
MsG0780038629.01.T01 MTR_4g022570 84.018 219 35 0 1 219 1 219 2.85e-130 366
MsG0780038629.01.T01 MTR_2g436870 70.000 220 66 0 1 220 1 220 1.73e-120 341
MsG0780038629.01.T01 MTR_4g083490 78.756 193 41 0 3 195 5 197 1.06e-117 334
MsG0780038629.01.T01 MTR_2g028790 75.130 193 48 0 3 195 7 199 4.34e-113 322
MsG0780038629.01.T01 MTR_7g058640 71.282 195 56 0 1 195 1 195 1.02e-104 301
MsG0780038629.01.T01 MTR_1g111890 54.622 238 89 1 1 219 1 238 9.26e-98 284
MsG0780038629.01.T01 MTR_7g058640 70.930 172 50 0 1 172 1 172 2.27e-91 266
MsG0780038629.01.T01 MTR_1g047710 80.645 124 24 0 64 187 12 135 2.52e-72 216
MsG0780038629.01.T01 MTR_4g022470 82.407 108 19 0 64 171 10 117 4.09e-61 187
MsG0780038629.01.T01 MTR_7g058640 70.940 117 34 0 79 195 1 117 1.04e-57 179
MsG0780038629.01.T01 MTR_4g052550 37.559 213 130 3 5 216 2 212 1.99e-48 158
MsG0780038629.01.T01 MTR_5g089370 37.264 212 130 3 6 216 3 212 7.25e-47 154
MsG0780038629.01.T01 MTR_4g115390 33.333 216 137 3 6 216 3 216 9.75e-42 141
MsG0780038629.01.T01 MTR_4g022550 85.484 62 9 0 158 219 10 71 1.91e-20 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038629.01.T01 AT1G04760 84.091 220 35 0 1 220 1 220 5.30e-135 378
MsG0780038629.01.T01 AT1G04760 84.091 220 35 0 1 220 1 220 5.30e-135 378
MsG0780038629.01.T01 AT2G32670 85.000 220 33 0 1 220 66 285 6.87e-131 370
MsG0780038629.01.T01 AT2G33120 84.615 221 34 0 1 221 1 221 3.78e-130 366
MsG0780038629.01.T01 AT1G04750 83.105 219 37 0 1 219 1 219 2.42e-127 358
MsG0780038629.01.T01 AT2G33120 81.223 229 35 1 1 221 1 229 1.39e-126 357
MsG0780038629.01.T01 AT3G54300 55.649 239 87 1 1 220 1 239 3.73e-101 293
MsG0780038629.01.T01 AT3G54300 55.649 239 87 1 1 220 1 239 3.73e-101 293
MsG0780038629.01.T01 AT3G54300 55.649 239 87 1 1 220 1 239 3.73e-101 293
MsG0780038629.01.T01 AT2G33110 69.683 221 63 1 1 221 1 217 1.21e-98 286
MsG0780038629.01.T01 AT4G15780 68.715 179 55 1 1 178 1 179 1.56e-90 264
MsG0780038629.01.T01 AT2G33110 72.840 162 44 0 1 162 1 162 6.76e-86 253
MsG0780038629.01.T01 AT1G04750 81.560 141 26 0 79 219 1 141 1.22e-69 209
MsG0780038629.01.T01 AT1G04750 81.560 141 26 0 79 219 1 141 1.22e-69 209
MsG0780038629.01.T01 AT1G04750 81.560 141 26 0 79 219 1 141 1.22e-69 209
MsG0780038629.01.T01 AT5G22360 39.252 214 126 3 5 216 2 213 3.89e-54 173
MsG0780038629.01.T01 AT5G11150 39.070 215 125 5 5 216 2 213 3.47e-51 166
MsG0780038629.01.T01 AT5G11150 39.070 215 125 5 5 216 2 213 5.56e-51 165
MsG0780038629.01.T01 AT4G32150 37.559 213 130 3 5 216 2 212 9.61e-48 157
MsG0780038629.01.T01 AT2G25340 36.842 190 117 3 5 193 2 189 2.23e-41 140
MsG0780038629.01.T01 AT2G33120 84.375 96 15 0 126 221 44 139 3.67e-38 129
MsG0780038629.01.T01 AT3G24890 56.383 94 35 2 113 200 14 107 2.61e-26 99.0
MsG0780038629.01.T01 AT3G24890 53.846 65 26 1 110 174 11 71 1.64e-15 69.3
MsG0780038629.01.T01 AT3G24890 53.846 65 26 1 110 174 11 71 1.64e-15 69.3
MsG0780038629.01.T01 AT3G24890 53.846 65 26 1 110 174 11 71 1.64e-15 69.3
MsG0780038629.01.T01 AT3G24890 53.846 65 26 1 110 174 11 71 1.64e-15 69.3

Find 66 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGCTTTATCTTCATATTT+TGG 0.145204 7:-50163951 None:intergenic
AAAGAACAATAATGAGAATT+AGG 0.159352 7:-50163996 None:intergenic
TGTTCGATGAGGGAAGTTTC+TGG 0.242534 7:-50161295 None:intergenic
GAAGATAAAGCTAATTGTTC+TGG 0.270272 7:+50163960 MsG0780038629.01.T01:CDS
TCTCGTTCTCTATATAGTTT+AGG 0.296039 7:+50164277 MsG0780038629.01.T01:three_prime_UTR
GAAAGCTTGCTAATCTCCTC+TGG 0.379999 7:-50162586 None:intergenic
AAGAACAATAATGAGAATTA+GGG 0.385939 7:-50163995 None:intergenic
GTTGTTGCTGTTGAGTCTGC+TGG 0.391522 7:+50162329 MsG0780038629.01.T01:CDS
AAGAGTCTCAATAAAGAGTT+CGG 0.392785 7:+50162440 MsG0780038629.01.T01:CDS
AATCTTCCTTGATACGTTCA+AGG 0.408743 7:-50162373 None:intergenic
ATACGTTCAAGGAAAGCAAT+TGG 0.426895 7:-50162362 None:intergenic
GACAGAGAACCTTCGCTCTC+AGG 0.438230 7:+50162945 MsG0780038629.01.T01:CDS
CGTTCTCTATATAGTTTAGG+TGG 0.449946 7:+50164280 MsG0780038629.01.T01:three_prime_UTR
TGCTTTCCTTGAACGTATCA+AGG 0.453306 7:+50162367 MsG0780038629.01.T01:CDS
AAGATAAAGCTAATTGTTCT+GGG 0.458032 7:+50163961 MsG0780038629.01.T01:CDS
ATTATTGTTCTTTCAATCTG+TGG 0.460900 7:+50164006 MsG0780038629.01.T01:CDS
GAGAAATTAGCACTAACCTA+TGG 0.465643 7:-50164258 None:intergenic
AGAGTCTCAATAAAGAGTTC+GGG 0.482939 7:+50162441 MsG0780038629.01.T01:CDS
AGAAGAAGAAGGAATGAGTA+GGG 0.483606 7:-50161089 None:intergenic
CAACGAGGTAATTGAAGGTA+TGG 0.488938 7:-50161343 None:intergenic
GGAAGAATGTAAATCTCAAA+AGG 0.489465 7:-50164155 None:intergenic
GGCAACGGCGGTGAAGTTAC+CGG 0.490789 7:-50161261 None:intergenic
CCACATGTTTCTCCTAAGCT+TGG 0.494084 7:-50163926 None:intergenic
AGTGTTGAACGAAAAGAGAA+AGG 0.501955 7:-50161043 None:intergenic
CTGATGAATATCATAGATGT+AGG 0.502028 7:-50164176 None:intergenic
AAGAAGAAGAAGGAATGAGT+AGG 0.502328 7:-50161090 None:intergenic
AGTTGAAGCCACCAAAGAAA+AGG 0.511203 7:-50164056 None:intergenic
CTGGAGACACTGCGCGGCAA+CGG 0.514487 7:-50161276 None:intergenic
ATTGTTCTTTCAATCTGTGG+TGG 0.517961 7:+50164009 MsG0780038629.01.T01:CDS
TTTGGCAGGTTCTGGACCGT+GGG 0.521838 7:+50162896 MsG0780038629.01.T01:intron
GCTTTCTAAAGTGCAAGCTC+AGG 0.524990 7:+50162603 MsG0780038629.01.T01:CDS
AGAGGTCAAAGGAGTTATGA+TGG 0.525035 7:+50162630 MsG0780038629.01.T01:CDS
GAAAGCGATGAAGAAGAAGA+AGG 0.529465 7:-50161100 None:intergenic
GTTCTCTATATAGTTTAGGT+GGG 0.541535 7:+50164281 MsG0780038629.01.T01:three_prime_UTR
GGCAACATGGAACCAAGCTT+AGG 0.549032 7:+50163914 MsG0780038629.01.T01:CDS
TTCAATTACCTCGTTGATAG+CGG 0.554201 7:+50161350 MsG0780038629.01.T01:CDS
GCTATCAACGAGGTAATTGA+AGG 0.555122 7:-50161348 None:intergenic
ATGGTGTAGATCTAAGTTGA+AGG 0.560301 7:+50162537 MsG0780038629.01.T01:intron
AGAAATTAGCACTAACCTAT+GGG 0.561164 7:-50164257 None:intergenic
TTGAACTTATTGTTCGATGA+GGG 0.567003 7:-50161305 None:intergenic
GCTCAGGTCTCAGAGGTCAA+AGG 0.570543 7:+50162619 MsG0780038629.01.T01:CDS
ATTGAACTTATTGTTCGATG+AGG 0.575942 7:-50161306 None:intergenic
GCTGAATACACTGAGTTCAC+CGG 0.580372 7:+50161242 MsG0780038629.01.T01:CDS
GCACAAGATTTCAGGCAACA+TGG 0.581723 7:+50163901 MsG0780038629.01.T01:CDS
CATTCTCTGACTCGAGACGA+TGG 0.581724 7:+50161169 MsG0780038629.01.T01:exon
AAGTTCAATTATAACTGCGA+TGG 0.585634 7:+50161320 MsG0780038629.01.T01:CDS
TATGAAACTTAACTAAGCAA+TGG 0.588496 7:-50164353 None:intergenic
ATTCTCTGACTCGAGACGAT+GGG 0.590685 7:+50161170 MsG0780038629.01.T01:exon
AAAGCTTGCTAATCTCCTCT+GGG 0.600356 7:-50162585 None:intergenic
TATGATGGAGAATATTGAGA+AGG 0.608070 7:+50162645 MsG0780038629.01.T01:CDS
GAGACACTGCGCGGCAACGG+CGG 0.616928 7:-50161273 None:intergenic
ATCTACAGCTTCGTTGCTCG+CGG 0.618567 7:+50161206 MsG0780038629.01.T01:CDS
GAGTCAGAGAATGACAATGC+CGG 0.621174 7:-50161159 None:intergenic
AAAAGCACTGTGGATAGTAG+AGG 0.638047 7:-50164130 None:intergenic
TAGTGAAAATCATATCGAGT+GGG 0.640345 7:-50164093 None:intergenic
AGTGCAAGCTCAGGTCTCAG+AGG 0.652865 7:+50162612 MsG0780038629.01.T01:CDS
CTAGTGAAAATCATATCGAG+TGG 0.653821 7:-50164094 None:intergenic
ACCAACAGACCTGAGAGCGA+AGG 0.661970 7:-50162954 None:intergenic
TTGCTGTTGAGTCTGCTGGA+CGG 0.664323 7:+50162333 MsG0780038629.01.T01:CDS
TTTAGCAAGAAATATGCTGG+AGG 0.673624 7:+50162395 MsG0780038629.01.T01:CDS
TTGGCAGGTTCTGGACCGTG+GGG 0.702676 7:+50162897 MsG0780038629.01.T01:intron
TCAAAAGGTCAAAAGCACTG+TGG 0.723666 7:-50164140 None:intergenic
TACTGAATCCGCTATCAACG+AGG 0.730358 7:-50161358 None:intergenic
CCAAGCTTAGGAGAAACATG+TGG 0.755323 7:+50163926 MsG0780038629.01.T01:CDS
AAGTTTCTGGAGACACTGCG+CGG 0.759403 7:-50161282 None:intergenic
GTACTGTGTTGAACACCCAG+AGG 0.812131 7:+50162570 MsG0780038629.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATATATAAATA+AGG + Chr7:50161586-50161605 MsG0780038629.01.T01:intron 0.0%
!! AATTAACAAAATAAAATTTC+AGG - Chr7:50162478-50162497 None:intergenic 10.0%
!!! AAAATTTTTTGTAGATAAAA+TGG + Chr7:50162050-50162069 MsG0780038629.01.T01:intron 10.0%
!!! TCTATAATATTTATCTATTT+TGG + Chr7:50162878-50162897 MsG0780038629.01.T01:intron 10.0%
!!! TTGAAAAAAATTCATATTTT+TGG + Chr7:50163837-50163856 MsG0780038629.01.T01:intron 10.0%
!! TAGACAAATATATAGTTAAT+AGG + Chr7:50163332-50163351 MsG0780038629.01.T01:intron 15.0%
!! TAGATAAAATGGAAAATTAA+GGG + Chr7:50162061-50162080 MsG0780038629.01.T01:intron 15.0%
!! AAAGAACAATAATGAGAATT+AGG - Chr7:50163999-50164018 None:intergenic 20.0%
!! AAGAACAATAATGAGAATTA+GGG - Chr7:50163998-50164017 None:intergenic 20.0%
!! AGATAAAATGGAAAATTAAG+GGG + Chr7:50162062-50162081 MsG0780038629.01.T01:intron 20.0%
!! ATATATAAATAAGGCGTAAT+AGG + Chr7:50161595-50161614 MsG0780038629.01.T01:intron 20.0%
!! ATATATAGTTAATAGGTAAG+AGG + Chr7:50163339-50163358 MsG0780038629.01.T01:intron 20.0%
!! GTAGATAAAATGGAAAATTA+AGG + Chr7:50162060-50162079 MsG0780038629.01.T01:intron 20.0%
!! TTAATTCACCATTTACATTT+GGG - Chr7:50162164-50162183 None:intergenic 20.0%
!! TTATCACAATAAGACTTAAA+AGG + Chr7:50163484-50163503 MsG0780038629.01.T01:intron 20.0%
!! TTTAATTCACCATTTACATT+TGG - Chr7:50162165-50162184 None:intergenic 20.0%
!!! GTTAATAACTTGATTGTTTT+TGG + Chr7:50162197-50162216 MsG0780038629.01.T01:intron 20.0%
!!! TAATATTTATCTATTTTGGC+AGG + Chr7:50162882-50162901 MsG0780038629.01.T01:intron 20.0%
!!! TATCGATTAATTTTTTGAGA+TGG + Chr7:50163659-50163678 MsG0780038629.01.T01:intron 20.0%
!!! TTAGCTTTATCTTCATATTT+TGG - Chr7:50163954-50163973 None:intergenic 20.0%
!!! TTATTTTGTTAATTTGCTAG+TGG + Chr7:50162484-50162503 MsG0780038629.01.T01:intron 20.0%
! AAATAAGTTGTATTCGATGT+AGG + Chr7:50161977-50161996 MsG0780038629.01.T01:intron 25.0%
! AAGATAAAGCTAATTGTTCT+GGG + Chr7:50163961-50163980 MsG0780038629.01.T01:CDS 25.0%
! AATGTCATAGTTACATTGAA+TGG + Chr7:50163401-50163420 MsG0780038629.01.T01:intron 25.0%
! ATTATTGTTCTTTCAATCTG+TGG + Chr7:50164006-50164025 MsG0780038629.01.T01:CDS 25.0%
! ATTGAATGGAATGTTGTAAT+AGG + Chr7:50163415-50163434 MsG0780038629.01.T01:intron 25.0%
! GAAAATGTTAAAGATGTAAG+TGG - Chr7:50162675-50162694 None:intergenic 25.0%
! GTAAAAACAAATCATCAGTA+AGG + Chr7:50163596-50163615 MsG0780038629.01.T01:intron 25.0%
! GTAATCTTCAATCATAATCA+TGG + Chr7:50163281-50163300 MsG0780038629.01.T01:intron 25.0%
! GTAATTATCATTGTAAGCAT+AGG + Chr7:50163203-50163222 MsG0780038629.01.T01:intron 25.0%
! GTGTAAACTGTAGTATATTT+CGG + Chr7:50163681-50163700 MsG0780038629.01.T01:intron 25.0%
! TAAGACTTAAAAGGTAAATC+TGG + Chr7:50163493-50163512 MsG0780038629.01.T01:intron 25.0%
! TGTAAATGGTGAATTAAATC+TGG + Chr7:50162167-50162186 MsG0780038629.01.T01:intron 25.0%
! TTTACTATCCCAAATGTAAA+TGG + Chr7:50162153-50162172 MsG0780038629.01.T01:intron 25.0%
!! AAATGAATGAACCTTTTCTT+TGG + Chr7:50164045-50164064 MsG0780038629.01.T01:exon 25.0%
!! AAGAGCAACATTTAAAATTC+TGG + Chr7:50162022-50162041 MsG0780038629.01.T01:intron 25.0%
!! CAATTCATATATGATTTTGC+AGG + Chr7:50163879-50163898 MsG0780038629.01.T01:intron 25.0%
!! TTCAATCATAATCATGGTTT+TGG + Chr7:50163287-50163306 MsG0780038629.01.T01:intron 25.0%
!!! AACATTTTTGAAATCTGTGA+AGG + Chr7:50161540-50161559 MsG0780038629.01.T01:intron 25.0%
!!! ACATTTTTGAAATCTGTGAA+GGG + Chr7:50161541-50161560 MsG0780038629.01.T01:intron 25.0%
!!! AGTGTTTTTAGTAGTCAATA+TGG + Chr7:50163178-50163197 MsG0780038629.01.T01:intron 25.0%
!!! CTACCTATTTTTATTTTCCT+GGG - Chr7:50162709-50162728 None:intergenic 25.0%
!!! TCTACCTATTTTTATTTTCC+TGG - Chr7:50162710-50162729 None:intergenic 25.0%
!!! TGGAATATTTTGTTTTCTCT+TGG + Chr7:50162217-50162236 MsG0780038629.01.T01:intron 25.0%
AAGAGTCTCAATAAAGAGTT+CGG + Chr7:50162440-50162459 MsG0780038629.01.T01:CDS 30.0%
AAGTTCAATTATAACTGCGA+TGG + Chr7:50161320-50161339 MsG0780038629.01.T01:CDS 30.0%
AATAGGTATGTGATTCATGT+GGG + Chr7:50163432-50163451 MsG0780038629.01.T01:intron 30.0%
AGAAATTAGCACTAACCTAT+GGG - Chr7:50164260-50164279 None:intergenic 30.0%
AGATTACTCAGAGTATACAT+TGG - Chr7:50163268-50163287 None:intergenic 30.0%
ATTGAACTTATTGTTCGATG+AGG - Chr7:50161309-50161328 None:intergenic 30.0%
CTGATGAATATCATAGATGT+AGG - Chr7:50164179-50164198 None:intergenic 30.0%
GAAGATAAAGCTAATTGTTC+TGG + Chr7:50163960-50163979 MsG0780038629.01.T01:CDS 30.0%
GATAACCTAAAACGAAAAAG+TGG - Chr7:50163469-50163488 None:intergenic 30.0%
GCTATATAGAATGAAATCTG+AGG + Chr7:50162100-50162119 MsG0780038629.01.T01:intron 30.0%
GGAAGAATGTAAATCTCAAA+AGG - Chr7:50164158-50164177 None:intergenic 30.0%
GTTCCCAGGAAAATAAAAAT+AGG + Chr7:50162703-50162722 MsG0780038629.01.T01:intron 30.0%
GTTCTCTATATAGTTTAGGT+GGG + Chr7:50164281-50164300 MsG0780038629.01.T01:three_prime_UTR 30.0%
TAAAAGGTAAATCTGGTATG+AGG + Chr7:50163500-50163519 MsG0780038629.01.T01:intron 30.0%
TAATAGGTATGTGATTCATG+TGG + Chr7:50163431-50163450 MsG0780038629.01.T01:intron 30.0%
TAGTGAAAATCATATCGAGT+GGG - Chr7:50164096-50164115 None:intergenic 30.0%
TCTCGTTCTCTATATAGTTT+AGG + Chr7:50164277-50164296 MsG0780038629.01.T01:three_prime_UTR 30.0%
TCTTAAACCTCAACAGAAAA+AGG - Chr7:50162257-50162276 None:intergenic 30.0%
TGAGGAAGAAAGAAAACATT+TGG + Chr7:50162118-50162137 MsG0780038629.01.T01:intron 30.0%
TTGAACTTATTGTTCGATGA+GGG - Chr7:50161308-50161327 None:intergenic 30.0%
! AGCAGTCTTATAAAAGTGTA+GGG + Chr7:50163017-50163036 MsG0780038629.01.T01:intron 30.0%
! GGTTTAAGATGTTATGAGTT+TGG + Chr7:50162268-50162287 MsG0780038629.01.T01:intron 30.0%
! TACATTATGTCTTTTTGCTG+TGG + Chr7:50162730-50162749 MsG0780038629.01.T01:intron 30.0%
! TATGATGGAGAATATTGAGA+AGG + Chr7:50162645-50162664 MsG0780038629.01.T01:CDS 30.0%
!! ACATTATGTCTTTTTGCTGT+GGG + Chr7:50162731-50162750 MsG0780038629.01.T01:intron 30.0%
!! GATTTTAGCAAGAAATATGC+TGG + Chr7:50162392-50162411 MsG0780038629.01.T01:CDS 30.0%
!! GGACATGGTATTATTTTTCT+TGG + Chr7:50163702-50163721 MsG0780038629.01.T01:intron 30.0%
!! TGTGAAATCTTTGTTGTTCA+TGG + Chr7:50162518-50162537 MsG0780038629.01.T01:intron 30.0%
!!! TTTTGCCACTTTTTCGTTTT+AGG + Chr7:50163461-50163480 MsG0780038629.01.T01:intron 30.0%
AAGAAGAAGAAGGAATGAGT+AGG - Chr7:50161093-50161112 None:intergenic 35.0%
AATCTTCCTTGATACGTTCA+AGG - Chr7:50162376-50162395 None:intergenic 35.0%
ACAAGCATACACAGATCAAA+AGG - Chr7:50163578-50163597 None:intergenic 35.0%
ACTGTAGTATATTTCGGACA+TGG + Chr7:50163687-50163706 MsG0780038629.01.T01:intron 35.0%
AGAAGAAGAAGGAATGAGTA+GGG - Chr7:50161092-50161111 None:intergenic 35.0%
AGAGTCTCAATAAAGAGTTC+GGG + Chr7:50162441-50162460 MsG0780038629.01.T01:CDS 35.0%
ATACGTTCAAGGAAAGCAAT+TGG - Chr7:50162365-50162384 None:intergenic 35.0%
ATTCTACTGTACACAGATCA+AGG - Chr7:50161472-50161491 None:intergenic 35.0%
ATTGTTCTTTCAATCTGTGG+TGG + Chr7:50164009-50164028 MsG0780038629.01.T01:CDS 35.0%
CAACTTGAAACATGAACACT+TGG - Chr7:50162821-50162840 None:intergenic 35.0%
CGTTCTCTATATAGTTTAGG+TGG + Chr7:50164280-50164299 MsG0780038629.01.T01:three_prime_UTR 35.0%
CTAGTGAAAATCATATCGAG+TGG - Chr7:50164097-50164116 None:intergenic 35.0%
GAATCAAATTTCGCGTTTGA+AGG - Chr7:50163736-50163755 None:intergenic 35.0%
GAGAAATTAGCACTAACCTA+TGG - Chr7:50164261-50164280 None:intergenic 35.0%
GGGTGATAGATTGTTATAGA+TGG + Chr7:50163037-50163056 MsG0780038629.01.T01:intron 35.0%
TATAAGACTGCTGTGCTAAA+AGG - Chr7:50163009-50163028 None:intergenic 35.0%
TGTAATCACATGTGTTAGTG+TGG + Chr7:50161847-50161866 MsG0780038629.01.T01:intron 35.0%
TTGATCTGTGTACAGTAGAA+TGG + Chr7:50161471-50161490 MsG0780038629.01.T01:intron 35.0%
TTTAGCAAGAAATATGCTGG+AGG + Chr7:50162395-50162414 MsG0780038629.01.T01:CDS 35.0%
! AAACACAACATTGAGTTGTG+TGG - Chr7:50163087-50163106 None:intergenic 35.0%
! AACACAACATTGAGTTGTGT+GGG - Chr7:50163086-50163105 None:intergenic 35.0%
! AGTGTTGAACGAAAAGAGAA+AGG - Chr7:50161046-50161065 None:intergenic 35.0%
! ATGGTGTAGATCTAAGTTGA+AGG + Chr7:50162537-50162556 MsG0780038629.01.T01:intron 35.0%
! CAGCAGTCTTATAAAAGTGT+AGG + Chr7:50163016-50163035 MsG0780038629.01.T01:intron 35.0%
! TGAATGAACCTTTTCTTTGG+TGG + Chr7:50164048-50164067 MsG0780038629.01.T01:exon 35.0%
! TGGTTTTCCTTTTTCTGTTG+AGG + Chr7:50162247-50162266 MsG0780038629.01.T01:intron 35.0%
! TGTTTTCTCTTGGTGAAGTT+TGG + Chr7:50162227-50162246 MsG0780038629.01.T01:intron 35.0%
! TTCAATTACCTCGTTGATAG+CGG + Chr7:50161350-50161369 MsG0780038629.01.T01:CDS 35.0%
!!! CTTTTTTCTCTCTCTACAAC+CGG + Chr7:50161140-50161159 MsG0780038629.01.T01:five_prime_UTR 35.0%
!!! TTATCTATTTTGGCAGGTTC+TGG + Chr7:50162888-50162907 MsG0780038629.01.T01:intron 35.0%
AGAGGTCAAAGGAGTTATGA+TGG + Chr7:50162630-50162649 MsG0780038629.01.T01:CDS 40.0%
AGTTGAAGCCACCAAAGAAA+AGG - Chr7:50164059-50164078 None:intergenic 40.0%
CAACGAGGTAATTGAAGGTA+TGG - Chr7:50161346-50161365 None:intergenic 40.0%
CATGCTATGAAGCACATAAG+CGG + Chr7:50161759-50161778 MsG0780038629.01.T01:intron 40.0%
GAAAGCGATGAAGAAGAAGA+AGG - Chr7:50161103-50161122 None:intergenic 40.0%
GCTATCAACGAGGTAATTGA+AGG - Chr7:50161351-50161370 None:intergenic 40.0%
TAAGTGCTCTCGATTACGAA+AGG - Chr7:50163777-50163796 None:intergenic 40.0%
TGCTTTCCTTGAACGTATCA+AGG + Chr7:50162367-50162386 MsG0780038629.01.T01:CDS 40.0%
TTGAATGTGAGTGTGTGACA+TGG + Chr7:50162850-50162869 MsG0780038629.01.T01:intron 40.0%
! AAAGCTCAATTTTCTCCCCA+CGG - Chr7:50162915-50162934 None:intergenic 40.0%
! ATTTTCCTGGGAACAGAGAA+GGG - Chr7:50162697-50162716 None:intergenic 40.0%
! CACTTCATTTTGTCTCCCAT+AGG + Chr7:50164242-50164261 MsG0780038629.01.T01:three_prime_UTR 40.0%
! GTGCATTGACACATTGAAAC+TGG + Chr7:50161795-50161814 MsG0780038629.01.T01:intron 40.0%
! TATTTTCCTGGGAACAGAGA+AGG - Chr7:50162698-50162717 None:intergenic 40.0%
! TTTTGCAGGCACAAGATTTC+AGG + Chr7:50163893-50163912 MsG0780038629.01.T01:intron 40.0%
!! AAAAGCACTGTGGATAGTAG+AGG - Chr7:50164133-50164152 None:intergenic 40.0%
!! AAAGCTTGCTAATCTCCTCT+GGG - Chr7:50162588-50162607 None:intergenic 40.0%
!! TATGTCTTTTTGCTGTGGGT+GGG + Chr7:50162735-50162754 MsG0780038629.01.T01:intron 40.0%
!! TCAAAAGGTCAAAAGCACTG+TGG - Chr7:50164143-50164162 None:intergenic 40.0%
!! TTATGTCTTTTTGCTGTGGG+TGG + Chr7:50162734-50162753 MsG0780038629.01.T01:intron 40.0%
ATGTTCAACTGACACGACAC+AGG - Chr7:50161924-50161943 None:intergenic 45.0%
ATTCTGATCGAAGACGTGTC+TGG - Chr7:50161882-50161901 None:intergenic 45.0%
CACGTCTTCGATCAGAATGT+CGG + Chr7:50161884-50161903 MsG0780038629.01.T01:intron 45.0%
CCAAGCTTAGGAGAAACATG+TGG + Chr7:50163926-50163945 MsG0780038629.01.T01:CDS 45.0%
CCACATGTTTCTCCTAAGCT+TGG - Chr7:50163929-50163948 None:intergenic 45.0%
GAGTCAGAGAATGACAATGC+CGG - Chr7:50161162-50161181 None:intergenic 45.0%
GCACAAGATTTCAGGCAACA+TGG + Chr7:50163901-50163920 MsG0780038629.01.T01:CDS 45.0%
GCTGAATACACTGAGTTCAC+CGG + Chr7:50161242-50161261 MsG0780038629.01.T01:CDS 45.0%
TACTGAATCCGCTATCAACG+AGG - Chr7:50161361-50161380 None:intergenic 45.0%
TGTGTCAATGCACTTGTGTC+TGG - Chr7:50161788-50161807 None:intergenic 45.0%
TGTTCGATGAGGGAAGTTTC+TGG - Chr7:50161298-50161317 None:intergenic 45.0%
! ATTCTCTGACTCGAGACGAT+GGG + Chr7:50161170-50161189 MsG0780038629.01.T01:exon 45.0%
! ATTTTCCCTTCTCTGTTCCC+AGG + Chr7:50162689-50162708 MsG0780038629.01.T01:intron 45.0%
! GGGATTTTCAGCATTTCGTG+AGG + Chr7:50164301-50164320 MsG0780038629.01.T01:three_prime_UTR 45.0%
!! GAAAGCTTGCTAATCTCCTC+TGG - Chr7:50162589-50162608 None:intergenic 45.0%
!! GCTTTCTAAAGTGCAAGCTC+AGG + Chr7:50162603-50162622 MsG0780038629.01.T01:CDS 45.0%
!!! TTATTTTCTTAAATTATTAT+CGG - Chr7:50161712-50161731 None:intergenic 5.0%
ATCTACAGCTTCGTTGCTCG+CGG + Chr7:50161206-50161225 MsG0780038629.01.T01:CDS 50.0%
CAACCGACGCTTCAGATTGA+AGG - Chr7:50161955-50161974 None:intergenic 50.0%
CGATTACGAAAGGTCACTGC+AGG - Chr7:50163767-50163786 None:intergenic 50.0%
GGCAACATGGAACCAAGCTT+AGG + Chr7:50163914-50163933 MsG0780038629.01.T01:CDS 50.0%
GTACTGTGTTGAACACCCAG+AGG + Chr7:50162570-50162589 MsG0780038629.01.T01:CDS 50.0%
! AAGTTTCTGGAGACACTGCG+CGG - Chr7:50161285-50161304 None:intergenic 50.0%
! ACGCCTTCAATCTGAAGCGT+CGG + Chr7:50161949-50161968 MsG0780038629.01.T01:intron 50.0%
! CATTCTCTGACTCGAGACGA+TGG + Chr7:50161169-50161188 MsG0780038629.01.T01:exon 50.0%
! GTTGTTGCTGTTGAGTCTGC+TGG + Chr7:50162329-50162348 MsG0780038629.01.T01:CDS 50.0%
! TTGCTGTTGAGTCTGCTGGA+CGG + Chr7:50162333-50162352 MsG0780038629.01.T01:CDS 50.0%
ACCAACAGACCTGAGAGCGA+AGG - Chr7:50162957-50162976 None:intergenic 55.0%
ACCTTCGCTCTCAGGTCTGT+TGG + Chr7:50162953-50162972 MsG0780038629.01.T01:intron 55.0%
AGTGCAAGCTCAGGTCTCAG+AGG + Chr7:50162612-50162631 MsG0780038629.01.T01:CDS 55.0%
AGTTGTGTGGGAGAGAGCAG+GGG - Chr7:50163074-50163093 None:intergenic 55.0%
GACAGAGAACCTTCGCTCTC+AGG + Chr7:50162945-50162964 MsG0780038629.01.T01:CDS 55.0%
GAGTTGTGTGGGAGAGAGCA+GGG - Chr7:50163075-50163094 None:intergenic 55.0%
GCTCAGGTCTCAGAGGTCAA+AGG + Chr7:50162619-50162638 MsG0780038629.01.T01:CDS 55.0%
TGAGTTGTGTGGGAGAGAGC+AGG - Chr7:50163076-50163095 None:intergenic 55.0%
!! TTTGGCAGGTTCTGGACCGT+GGG + Chr7:50162896-50162915 MsG0780038629.01.T01:intron 55.0%
!!! TTTTGGCAGGTTCTGGACCG+TGG + Chr7:50162895-50162914 MsG0780038629.01.T01:intron 55.0%
GGCAACGGCGGTGAAGTTAC+CGG - Chr7:50161264-50161283 None:intergenic 60.0%
!! TTGGCAGGTTCTGGACCGTG+GGG + Chr7:50162897-50162916 MsG0780038629.01.T01:intron 60.0%
CTGGAGACACTGCGCGGCAA+CGG - Chr7:50161279-50161298 None:intergenic 65.0%
GAGACACTGCGCGGCAACGG+CGG - Chr7:50161276-50161295 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 50161028 50164363 50161028 ID=MsG0780038629.01;Name=MsG0780038629.01
Chr7 mRNA 50161028 50164363 50161028 ID=MsG0780038629.01.T01;Parent=MsG0780038629.01;Name=MsG0780038629.01.T01;_AED=0.49;_eAED=0.49;_QI=160|1|1|1|1|1|5|313|221
Chr7 exon 50161028 50161377 50161028 ID=MsG0780038629.01.T01:exon:6803;Parent=MsG0780038629.01.T01
Chr7 exon 50162321 50162462 50162321 ID=MsG0780038629.01.T01:exon:6804;Parent=MsG0780038629.01.T01
Chr7 exon 50162546 50162666 50162546 ID=MsG0780038629.01.T01:exon:6805;Parent=MsG0780038629.01.T01
Chr7 exon 50162904 50162966 50162904 ID=MsG0780038629.01.T01:exon:6806;Parent=MsG0780038629.01.T01
Chr7 exon 50163901 50164363 50163901 ID=MsG0780038629.01.T01:exon:6807;Parent=MsG0780038629.01.T01
Chr7 five_prime_UTR 50161028 50161187 50161028 ID=MsG0780038629.01.T01:five_prime_utr;Parent=MsG0780038629.01.T01
Chr7 CDS 50161188 50161377 50161188 ID=MsG0780038629.01.T01:cds;Parent=MsG0780038629.01.T01
Chr7 CDS 50162321 50162462 50162321 ID=MsG0780038629.01.T01:cds;Parent=MsG0780038629.01.T01
Chr7 CDS 50162546 50162666 50162546 ID=MsG0780038629.01.T01:cds;Parent=MsG0780038629.01.T01
Chr7 CDS 50162904 50162966 50162904 ID=MsG0780038629.01.T01:cds;Parent=MsG0780038629.01.T01
Chr7 CDS 50163901 50164050 50163901 ID=MsG0780038629.01.T01:cds;Parent=MsG0780038629.01.T01
Chr7 three_prime_UTR 50164051 50164363 50164051 ID=MsG0780038629.01.T01:three_prime_utr;Parent=MsG0780038629.01.T01
Gene Sequence

>MsG0780038629.01.T01

ATGGGACAACAATCGTTGATCTACAGCTTCGTTGCTCGCGGCACTGTCATTCTCGCTGAATACACTGAGTTCACCGGTAACTTCACCGCCGTTGCCGCGCAGTGTCTCCAGAAACTTCCCTCATCGAACAATAAGTTCAATTATAACTGCGATGGCCATACCTTCAATTACCTCGTTGATAGCGGATTCACTTACTGTGTTGTTGCTGTTGAGTCTGCTGGACGGCAAATTCCAATTGCTTTCCTTGAACGTATCAAGGAAGATTTTAGCAAGAAATATGCTGGAGGAAAAGCTGAAAACGCAGCTGCTAAGAGTCTCAATAAAGAGTTCGGATCTAAGTTGAAGGAGCAGATGCAGTACTGTGTTGAACACCCAGAGGAGATTAGCAAGCTTTCTAAAGTGCAAGCTCAGGTCTCAGAGGTCAAAGGAGTTATGATGGAGAATATTGAGAAGGTTCTGGACCGTGGGGAGAAAATTGAGCTTTTAGTAGACAAGACAGAGAACCTTCGCTCTCAGGCACAAGATTTCAGGCAACATGGAACCAAGCTTAGGAGAAACATGTGGTTCCAAAATATGAAGATAAAGCTAATTGTTCTGGGTATCATAATTGCCCTAATTCTCATTATTGTTCTTTCAATCTGTGGTGGCTTCAACTGTTCTAAATGA
Protein sequence

>MsG0780038629.01.T01

MGQQSLIYSFVARGTVILAEYTEFTGNFTAVAAQCLQKLPSSNNKFNYNCDGHTFNYLVDSGFTYCVVAVESAGRQIPIAFLERIKEDFSKKYAGGKAENAAAKSLNKEFGSKLKEQMQYCVEHPEEISKLSKVQAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQHGTKLRRNMWFQNMKIKLIVLGIIIALILIIVLSICGGFNCSK*