AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040256.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040256.01.T01 MTR_7g086710 96.711 456 15 0 1 456 1 456 0.0 903
MsG0780040256.01.T01 MTR_6g027560 64.615 195 43 1 256 450 68 236 6.29e-76 238
MsG0780040256.01.T01 MTR_6g027560 61.290 62 24 0 81 142 2 63 1.58e-20 90.9
MsG0780040256.01.T01 MTR_3g033520 32.367 414 266 5 48 452 137 545 1.40e-69 231
MsG0780040256.01.T01 MTR_3g033520 32.367 414 266 5 48 452 156 564 2.37e-69 231
MsG0780040256.01.T01 MTR_5g054780 26.496 351 241 6 121 458 128 474 1.23e-21 97.8
MsG0780040256.01.T01 MTR_1g111330 27.823 248 168 4 220 458 235 480 1.80e-20 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040256.01.T01 AT3G04440 52.594 424 196 4 35 457 24 443 9.08e-156 450
MsG0780040256.01.T01 AT3G04440 52.594 424 196 4 35 457 47 466 1.43e-155 450
MsG0780040256.01.T01 AT3G03700 52.594 424 196 4 35 457 47 466 1.53e-155 450
MsG0780040256.01.T01 AT5G17830 39.813 427 239 7 35 457 24 436 2.19e-102 313
MsG0780040256.01.T01 AT5G17830 39.813 427 239 7 35 457 45 457 4.10e-102 313
MsG0780040256.01.T01 AT5G13760 31.278 454 284 9 5 447 115 551 3.86e-68 228
MsG0780040256.01.T01 AT1G25500 26.209 393 264 11 83 458 40 423 8.71e-19 89.0
MsG0780040256.01.T01 AT1G25500 26.209 393 264 11 83 458 98 481 1.08e-18 89.0
MsG0780040256.01.T01 AT1G25500 28.270 237 159 4 180 407 69 303 2.93e-14 73.9

Find 113 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACGCCACTGAAATCTTAT+TGG 0.164445 7:-75007951 MsG0780040256.01.T01:CDS
AAACACTAAAAGCAGTTTCT+TGG 0.214173 7:+75008886 None:intergenic
GACACAGTCAAGCACTTAAT+TGG 0.226546 7:-75007653 MsG0780040256.01.T01:CDS
GGAATTCTGTTTGTGTTAAT+TGG 0.230019 7:-75008064 MsG0780040256.01.T01:CDS
CTGCTAGTTTGGTTCTGTTT+TGG 0.252106 7:+75007816 None:intergenic
GCCAATGAGGAAAGCATAAA+TGG 0.270913 7:+75007253 None:intergenic
GATGCAAATGTCTGCTAGTT+TGG 0.288876 7:+75007805 None:intergenic
AGGCGCTCAGGGCAGCATTT+TGG 0.291910 7:-75008114 MsG0780040256.01.T01:CDS
ATTAGAGGAATTGATAGATT+TGG 0.297890 7:-75007387 MsG0780040256.01.T01:CDS
TCTGGTTCTGATTTCAATCT+TGG 0.322434 7:-75008287 MsG0780040256.01.T01:CDS
TCCATTTATGCTTTCCTCAT+TGG 0.331608 7:-75007254 MsG0780040256.01.T01:CDS
TTTCCTCATTGGCTATTTCC+TGG 0.332358 7:-75007243 MsG0780040256.01.T01:intron
CTCAACTATTCCAGTACGTT+TGG 0.342405 7:-75006503 MsG0780040256.01.T01:CDS
TGCAAGCATCTTCTGATACT+TGG 0.353711 7:-75007430 MsG0780040256.01.T01:CDS
GCAGTGATTCAATCCCTCTA+TGG 0.358187 7:-75007998 MsG0780040256.01.T01:CDS
GTTGTCTTGTGAGTGGAATC+TGG 0.359633 7:-75007313 MsG0780040256.01.T01:CDS
TTCAATCCCTCTATGGTTGT+TGG 0.364985 7:-75007991 MsG0780040256.01.T01:CDS
GTTCATTAGAGTTGGATTAG+AGG 0.368326 7:-75007402 MsG0780040256.01.T01:CDS
TTGTGACAAAGGGGAATAGA+TGG 0.384175 7:-75007490 MsG0780040256.01.T01:CDS
TTAATTGGAAGTGTTTGTAT+AGG 0.391167 7:-75007638 MsG0780040256.01.T01:CDS
GCCACCCGGAAAAGGCGCTC+AGG 0.396296 7:-75008126 MsG0780040256.01.T01:CDS
GCGCGATCAACGAGTCTGAT+TGG 0.406915 7:-75007575 MsG0780040256.01.T01:CDS
ACCACTTCTCAGGGTGGAAA+TGG 0.409082 7:+75008218 None:intergenic
AGTGGAGGGTACCACTTCTC+AGG 0.432046 7:+75008208 None:intergenic
ATGGCCACAAGCATGTGTTT+CGG 0.434234 7:-75006572 MsG0780040256.01.T01:CDS
TCAATCCCTCTATGGTTGTT+GGG 0.439021 7:-75007990 MsG0780040256.01.T01:CDS
AATTGGTTCTGCATTGAGTT+TGG 0.444379 7:-75008047 MsG0780040256.01.T01:CDS
TGGGACATGTTCATTAGAGT+TGG 0.448487 7:-75007410 MsG0780040256.01.T01:CDS
CATTGCACGCCACCCGGAAA+AGG 0.449923 7:-75008134 MsG0780040256.01.T01:CDS
TATCTTCAGTGTTTAAGCTC+TGG 0.452282 7:+75006444 None:intergenic
GCGTCGCTTCTTGTGACAAA+GGG 0.456779 7:-75007500 MsG0780040256.01.T01:CDS
GATAAATTCTTTGATAATGT+TGG 0.457004 7:-75006300 MsG0780040256.01.T01:three_prime_UTR
AAGATAATAGAATAGGATAA+TGG 0.476066 7:-75006427 MsG0780040256.01.T01:three_prime_UTR
GTTGTGTGTTTCTGTCATGA+TGG 0.478948 7:+75008809 None:intergenic
TCTGCATTGAGTTTGGTAGT+TGG 0.480328 7:-75008040 MsG0780040256.01.T01:CDS
GCATGTTCTTTAACTGTCAT+CGG 0.486379 7:-75007890 MsG0780040256.01.T01:CDS
GCAAGCATCTTCTGATACTT+GGG 0.490664 7:-75007429 MsG0780040256.01.T01:CDS
TTCTTGGTTTGACGTGGCAA+TGG 0.491082 7:-75008159 MsG0780040256.01.T01:CDS
CTTCTTGCATCAACAGTATG+TGG 0.493764 7:-75008187 MsG0780040256.01.T01:CDS
TTCTTGTGTTAGTTGTTCGA+TGG 0.494911 7:-75007528 MsG0780040256.01.T01:CDS
TCTTGTGTTAGTTGTTCGAT+GGG 0.495039 7:-75007527 MsG0780040256.01.T01:CDS
TCTGTCATGATGGTTATTCA+AGG 0.499092 7:+75008819 None:intergenic
TCCCTCTATGGTTGTTGGGT+CGG 0.500054 7:-75007986 MsG0780040256.01.T01:CDS
AACACTGAAGATAATAGAAT+AGG 0.502804 7:-75006434 MsG0780040256.01.T01:three_prime_UTR
TGAAGCTGCTCCAAACGTAC+TGG 0.503110 7:+75006493 None:intergenic
CCATTGTTAACGTGTGCAAT+GGG 0.510592 7:-75008085 MsG0780040256.01.T01:CDS
ATGTTGGAGTTTATAACAAA+GGG 0.512752 7:-75007457 MsG0780040256.01.T01:CDS
CAATACAAGTCACAGTTTCA+AGG 0.513646 7:-75007733 MsG0780040256.01.T01:CDS
GTCAACACACCAACAGTGGC+AGG 0.513691 7:-75008352 MsG0780040256.01.T01:CDS
ACAACAAACTCTTCACATTG+AGG 0.513760 7:-75008776 MsG0780040256.01.T01:intron
TTAGTGATCATACTGAGCCT+TGG 0.514837 7:-75007782 MsG0780040256.01.T01:CDS
CATGTTGGAGTTTATAACAA+AGG 0.518902 7:-75007458 MsG0780040256.01.T01:CDS
CCACCCGGAAAAGGCGCTCA+GGG 0.520194 7:-75008125 MsG0780040256.01.T01:CDS
AGTCAAATTGAGTGCTCTGT+GGG 0.523005 7:+75006524 None:intergenic
TAAAGAACATGCTAAGCGCT+TGG 0.526362 7:+75007901 None:intergenic
TTGATAGATTTGGATCTCAC+TGG 0.529011 7:-75007377 MsG0780040256.01.T01:CDS
TTCTTGCATCAACAGTATGT+GGG 0.529436 7:-75008186 MsG0780040256.01.T01:CDS
TCGTTGATCGCGCAAAGCCT+CGG 0.530299 7:+75007585 None:intergenic
TTTCTTAGTGGTGTTGCAGT+GGG 0.533646 7:-75007344 MsG0780040256.01.T01:CDS
GCAATTTGTTGTCTTGTGAG+TGG 0.535101 7:-75007320 MsG0780040256.01.T01:CDS
AGCATAAATGGATAATTCCA+TGG 0.536059 7:+75007265 None:intergenic
TGTGACAAAGGGGAATAGAT+GGG 0.538791 7:-75007489 MsG0780040256.01.T01:CDS
GCTCTGTGGGTTCTCTGCAT+AGG 0.541459 7:+75006537 None:intergenic
ATGGATCATTGCACGCCACC+CGG 0.544707 7:-75008140 MsG0780040256.01.T01:CDS
AGAGTCCAATGGTAGGGACT+AGG 0.550828 7:+75007609 None:intergenic
ACTTCTCAGGGTGGAAATGG+TGG 0.554387 7:+75008221 None:intergenic
TACCGACCCAACAACCATAG+AGG 0.555733 7:+75007984 None:intergenic
TGATCATACTGAGCCTTGGA+TGG 0.561287 7:-75007778 MsG0780040256.01.T01:CDS
ACCATTTCCACCCTGAGAAG+TGG 0.561789 7:-75008219 MsG0780040256.01.T01:CDS
AATACAAGTCACAGTTTCAA+GGG 0.562497 7:-75007732 MsG0780040256.01.T01:CDS
TTTCTTGTGTCTGGAATTGG+CGG 0.566415 7:-75007851 MsG0780040256.01.T01:CDS
AGAAACCAATAAGATTTCAG+TGG 0.568615 7:+75007946 None:intergenic
TGCGTCGCTTCTTGTGACAA+AGG 0.570182 7:-75007501 MsG0780040256.01.T01:CDS
CTCGGAAGAGTCCAATGGTA+GGG 0.572026 7:+75007603 None:intergenic
CTTCTCAGGGTGGAAATGGT+GGG 0.576067 7:+75008222 None:intergenic
AGAGTTTGTTGTTGAACCTG+TGG 0.577575 7:+75008787 None:intergenic
ATGTGTTTCGGCTTACTATG+TGG 0.578932 7:-75006560 MsG0780040256.01.T01:CDS
TCCATTGTTAACGTGTGCAA+TGG 0.579007 7:-75008086 MsG0780040256.01.T01:CDS
CCCATTGCACACGTTAACAA+TGG 0.579161 7:+75008085 None:intergenic
TCCATCCTAGTCCCTACCAT+TGG 0.583452 7:-75007614 MsG0780040256.01.T01:CDS
TGACAGAAACACACAACCAC+AGG 0.590412 7:-75008803 MsG0780040256.01.T01:CDS
ATGGTGGGAGGAAGAGTCCA+TGG 0.595433 7:+75008237 None:intergenic
TTTCTTGCTCCCTACCAATG+AGG 0.596203 7:+75008922 None:intergenic
GAGCCTTGGATGGACTATGC+AGG 0.596223 7:-75007768 MsG0780040256.01.T01:CDS
GGGGAATTCTTGGTTTGACG+TGG 0.600163 7:-75008165 MsG0780040256.01.T01:CDS
CCTCGGAAGAGTCCAATGGT+AGG 0.600402 7:+75007602 None:intergenic
ACTGTTGATGCAAGAAGTGG+AGG 0.603281 7:+75008193 None:intergenic
AATTCTTGAGATAATAGCAT+AGG 0.608917 7:-75006365 MsG0780040256.01.T01:three_prime_UTR
ACCGACCCAACAACCATAGA+GGG 0.610841 7:+75007985 None:intergenic
GAACCTGCATAGTCCATCCA+AGG 0.616356 7:+75007765 None:intergenic
CATACTGTTGATGCAAGAAG+TGG 0.616654 7:+75008190 None:intergenic
TCTTGCATCAACAGTATGTG+GGG 0.620725 7:-75008185 MsG0780040256.01.T01:CDS
GTGACAAAGGGGAATAGATG+GGG 0.624112 7:-75007488 MsG0780040256.01.T01:CDS
CGATCAACGAGTCTGATTGG+AGG 0.624496 7:-75007572 MsG0780040256.01.T01:CDS
CCTACCATTGGACTCTTCCG+AGG 0.624707 7:-75007602 MsG0780040256.01.T01:CDS
TTACCAGGAAATAGCCAATG+AGG 0.629798 7:+75007240 None:intergenic
TCCAATGGTAGGGACTAGGA+TGG 0.634390 7:+75007613 None:intergenic
CTCAGGGTGGAAATGGTGGG+AGG 0.637257 7:+75008225 None:intergenic
GTCATGATGGTTATTCAAGG+TGG 0.642755 7:+75008822 None:intergenic
AGTGTAGGTTGGCTATTGCA+TGG 0.643535 7:-75006591 MsG0780040256.01.T01:CDS
CATCATCTATGGTCTTACCA+TGG 0.643916 7:-75008254 MsG0780040256.01.T01:CDS
AGTGTACAAGAACTATGCCA+TGG 0.645968 7:-75007282 MsG0780040256.01.T01:CDS
CGTCGCTTCTTGTGACAAAG+GGG 0.649425 7:-75007499 MsG0780040256.01.T01:CDS
CTTTGTCAACACACCAACAG+TGG 0.654660 7:-75008356 MsG0780040256.01.T01:CDS
GTGGAGGGTACCACTTCTCA+GGG 0.659062 7:+75008209 None:intergenic
GAGTCAAATTGAGTGCTCTG+TGG 0.662787 7:+75006523 None:intergenic
ACCAATGAGGCAAAACCAGT+AGG 0.668160 7:+75008935 None:intergenic
CTGTTGATGCAAGAAGTGGA+GGG 0.675349 7:+75008194 None:intergenic
AAAGCCTCGGAAGAGTCCAA+TGG 0.682584 7:+75007598 None:intergenic
CTTGCATCAACAGTATGTGG+GGG 0.686111 7:-75008184 MsG0780040256.01.T01:CDS
TAAGCCGAAACACATGCTTG+TGG 0.693260 7:+75006568 None:intergenic
GAGGGTACCACTTCTCAGGG+TGG 0.704312 7:+75008212 None:intergenic
TGTCACAAAATGCAACTCTG+AGG 0.714153 7:+75007672 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTATATTATAATAATAA+AGG - Chr7:75008026-75008045 MsG0780040256.01.T01:CDS 0.0%
!!! TGAATTTAAAATATTTGAAT+TGG + Chr7:75007997-75008016 None:intergenic 10.0%
!! AAACATTAACATAAACAAAA+TGG - Chr7:75008471-75008490 MsG0780040256.01.T01:intron 15.0%
!! CTTCATTATTAAGAAAAATA+GGG + Chr7:75008497-75008516 None:intergenic 15.0%
!! TCTTCATTATTAAGAAAAAT+AGG + Chr7:75008498-75008517 None:intergenic 15.0%
!!! AATAAGTTGAAATTAGTTTA+TGG + Chr7:75008152-75008171 None:intergenic 15.0%
!!! TATAATAATAAAGGTTTGTT+TGG - Chr7:75008035-75008054 MsG0780040256.01.T01:CDS 15.0%
!! AAAAAATAATTAAGTGCGTA+TGG + Chr7:75008301-75008320 None:intergenic 20.0%
!! AAGATAATAGAATAGGATAA+TGG - Chr7:75008774-75008793 MsG0780040256.01.T01:intron 20.0%
!! AGAATTTACTATTTGAATTG+AGG + Chr7:75008352-75008371 None:intergenic 20.0%
!! AGTAAAGAAGAAAAGATTAA+AGG + Chr7:75006481-75006500 None:intergenic 20.0%
!! ATCAATATACTATAACGAAT+CGG + Chr7:75006763-75006782 None:intergenic 20.0%
!! TTGATTGTTTAATCTATAGA+AGG - Chr7:75006778-75006797 MsG0780040256.01.T01:intron 20.0%
!!! GATAAATTCTTTGATAATGT+TGG - Chr7:75008901-75008920 MsG0780040256.01.T01:five_prime_UTR 20.0%
! AACACTGAAGATAATAGAAT+AGG - Chr7:75008767-75008786 MsG0780040256.01.T01:intron 25.0%
! AATTCTTGAGATAATAGCAT+AGG - Chr7:75008836-75008855 MsG0780040256.01.T01:exon 25.0%
! ATGTTGGAGTTTATAACAAA+GGG - Chr7:75007744-75007763 MsG0780040256.01.T01:CDS 25.0%
! ATTAGAGGAATTGATAGATT+TGG - Chr7:75007814-75007833 MsG0780040256.01.T01:CDS 25.0%
! CTCAAGAATATTGAAAGAAA+TGG + Chr7:75006598-75006617 None:intergenic 25.0%
! TATGTATTTGCGTAATTGTT+TGG - Chr7:75008096-75008115 MsG0780040256.01.T01:CDS 25.0%
!! GTTAAGTATATGCATTTTTC+TGG - Chr7:75007491-75007510 MsG0780040256.01.T01:CDS 25.0%
!!! TTAATTGGAAGTGTTTGTAT+AGG - Chr7:75007563-75007582 MsG0780040256.01.T01:CDS 25.0%
!!! TTTACTTTTTCTTTCAACTG+TGG - Chr7:75006495-75006514 MsG0780040256.01.T01:CDS 25.0%
AAACACTAAAAGCAGTTTCT+TGG + Chr7:75006318-75006337 None:intergenic 30.0%
AATACAAGTCACAGTTTCAA+GGG - Chr7:75007469-75007488 MsG0780040256.01.T01:CDS 30.0%
AATAGCCGTTTCTTCAAATT+CGG - Chr7:75006652-75006671 MsG0780040256.01.T01:intron 30.0%
AGAAACCAATAAGATTTCAG+TGG + Chr7:75007258-75007277 None:intergenic 30.0%
AGCATAAATGGATAATTCCA+TGG + Chr7:75007939-75007958 None:intergenic 30.0%
CATGTTGGAGTTTATAACAA+AGG - Chr7:75007743-75007762 MsG0780040256.01.T01:CDS 30.0%
GGAATTCTGTTTGTGTTAAT+TGG - Chr7:75007137-75007156 MsG0780040256.01.T01:intron 30.0%
TGATTTATTTGAGCCTATAC+CGG - Chr7:75008060-75008079 MsG0780040256.01.T01:CDS 30.0%
! AAGTATATGCATTTTTCTGG+AGG - Chr7:75007494-75007513 MsG0780040256.01.T01:CDS 30.0%
! GATTCTTTTCTACTTGTATC+TGG - Chr7:75006896-75006915 MsG0780040256.01.T01:intron 30.0%
! GTGATTTTCATCATCATCTA+TGG - Chr7:75006936-75006955 MsG0780040256.01.T01:intron 30.0%
! TGAATTGAGGTTTGATAATC+AGG + Chr7:75008339-75008358 None:intergenic 30.0%
! TTTGATAATCAGGCTATGTT+TGG + Chr7:75008329-75008348 None:intergenic 30.0%
ACAACAAACTCTTCACATTG+AGG - Chr7:75006425-75006444 MsG0780040256.01.T01:three_prime_UTR 35.0%
ACGCAAATACATATGCTAGT+AGG + Chr7:75008089-75008108 None:intergenic 35.0%
ATAGAAGGCTAAAGTCAACT+TGG - Chr7:75006793-75006812 MsG0780040256.01.T01:intron 35.0%
CAATACAAGTCACAGTTTCA+AGG - Chr7:75007468-75007487 MsG0780040256.01.T01:CDS 35.0%
CATAGCCGAATTTGAAGAAA+CGG + Chr7:75006660-75006679 None:intergenic 35.0%
GCATGTTCTTTAACTGTCAT+CGG - Chr7:75007311-75007330 MsG0780040256.01.T01:CDS 35.0%
TAATTGTTTGGACGAGCTTA+TGG - Chr7:75008108-75008127 MsG0780040256.01.T01:CDS 35.0%
TACGCTGTTTGTACAAAATG+TGG + Chr7:75006709-75006728 None:intergenic 35.0%
TAGTCACAGAAGTAATACAG+AGG + Chr7:75008561-75008580 None:intergenic 35.0%
TATCTTCAGTGTTTAAGCTC+TGG + Chr7:75008760-75008779 None:intergenic 35.0%
TCCATTTATGCTTTCCTCAT+TGG - Chr7:75007947-75007966 MsG0780040256.01.T01:CDS 35.0%
TCTGTCATGATGGTTATTCA+AGG + Chr7:75006385-75006404 None:intergenic 35.0%
TCTTGTGTTAGTTGTTCGAT+GGG - Chr7:75007674-75007693 MsG0780040256.01.T01:CDS 35.0%
TTCTTGCATCAACAGTATGT+GGG - Chr7:75007015-75007034 MsG0780040256.01.T01:intron 35.0%
TTCTTGTGTTAGTTGTTCGA+TGG - Chr7:75007673-75007692 MsG0780040256.01.T01:CDS 35.0%
TTGATAGATTTGGATCTCAC+TGG - Chr7:75007824-75007843 MsG0780040256.01.T01:CDS 35.0%
! GTTCATTAGAGTTGGATTAG+AGG - Chr7:75007799-75007818 MsG0780040256.01.T01:CDS 35.0%
!! AATTGGTTCTGCATTGAGTT+TGG - Chr7:75007154-75007173 MsG0780040256.01.T01:intron 35.0%
!! TATATGCATTTTTCTGGAGG+AGG - Chr7:75007497-75007516 MsG0780040256.01.T01:CDS 35.0%
!! TCTGGTTCTGATTTCAATCT+TGG - Chr7:75006914-75006933 MsG0780040256.01.T01:intron 35.0%
!! TGTTTTCTTGTGTCTGGAAT+TGG - Chr7:75007347-75007366 MsG0780040256.01.T01:CDS 35.0%
!!! GTGCAGTTTTGAATTCAACA+TGG - Chr7:75006356-75006375 MsG0780040256.01.T01:three_prime_UTR 35.0%
ACCTACACTGCAAAACTCAT+TGG + Chr7:75008599-75008618 None:intergenic 40.0%
AGTCAAATTGAGTGCTCTGT+GGG + Chr7:75008680-75008699 None:intergenic 40.0%
AGTGTACAAGAACTATGCCA+TGG - Chr7:75007919-75007938 MsG0780040256.01.T01:CDS 40.0%
ATGTGTTTCGGCTTACTATG+TGG - Chr7:75008641-75008660 MsG0780040256.01.T01:intron 40.0%
ATTGGAACTGAGTTCTTACC+AGG + Chr7:75007979-75007998 None:intergenic 40.0%
CATACTGTTGATGCAAGAAG+TGG + Chr7:75007014-75007033 None:intergenic 40.0%
CCATTGTTAACGTGTGCAAT+GGG - Chr7:75007116-75007135 MsG0780040256.01.T01:intron 40.0%
CTACGCCACTGAAATCTTAT+TGG - Chr7:75007250-75007269 MsG0780040256.01.T01:CDS 40.0%
CTCAACTATTCCAGTACGTT+TGG - Chr7:75008698-75008717 MsG0780040256.01.T01:intron 40.0%
CTTCTTGCATCAACAGTATG+TGG - Chr7:75007014-75007033 MsG0780040256.01.T01:intron 40.0%
GACACAGTCAAGCACTTAAT+TGG - Chr7:75007548-75007567 MsG0780040256.01.T01:CDS 40.0%
GATGCAAATGTCTGCTAGTT+TGG + Chr7:75007399-75007418 None:intergenic 40.0%
GCAAGCATCTTCTGATACTT+GGG - Chr7:75007772-75007791 MsG0780040256.01.T01:CDS 40.0%
GGCGTAAATGCTTATCATAG+AGG + Chr7:75008280-75008299 None:intergenic 40.0%
GTCATGATGGTTATTCAAGG+TGG + Chr7:75006382-75006401 None:intergenic 40.0%
TAAAGAACATGCTAAGCGCT+TGG + Chr7:75007303-75007322 None:intergenic 40.0%
TACATATGCTAGTAGGTAGC+CGG + Chr7:75008082-75008101 None:intergenic 40.0%
TATTCCTGTGTTGTCGATCA+CGG - Chr7:75006620-75006639 MsG0780040256.01.T01:intron 40.0%
TCAATCCCTCTATGGTTGTT+GGG - Chr7:75007211-75007230 MsG0780040256.01.T01:intron 40.0%
TCCATTGTTAACGTGTGCAA+TGG - Chr7:75007115-75007134 MsG0780040256.01.T01:intron 40.0%
TCTTGCATCAACAGTATGTG+GGG - Chr7:75007016-75007035 MsG0780040256.01.T01:intron 40.0%
TGCAAGCATCTTCTGATACT+TGG - Chr7:75007771-75007790 MsG0780040256.01.T01:CDS 40.0%
TGGGACATGTTCATTAGAGT+TGG - Chr7:75007791-75007810 MsG0780040256.01.T01:CDS 40.0%
TGTCACAAAATGCAACTCTG+AGG + Chr7:75007532-75007551 None:intergenic 40.0%
TGTGACAAAGGGGAATAGAT+GGG - Chr7:75007712-75007731 MsG0780040256.01.T01:CDS 40.0%
TTACCAGGAAATAGCCAATG+AGG + Chr7:75007964-75007983 None:intergenic 40.0%
TTAGTGATCATACTGAGCCT+TGG - Chr7:75007419-75007438 MsG0780040256.01.T01:CDS 40.0%
TTCAATCCCTCTATGGTTGT+TGG - Chr7:75007210-75007229 MsG0780040256.01.T01:intron 40.0%
TTGTGACAAAGGGGAATAGA+TGG - Chr7:75007711-75007730 MsG0780040256.01.T01:CDS 40.0%
! AACTTGGTTGTTTCAAGTGC+AGG - Chr7:75006809-75006828 MsG0780040256.01.T01:intron 40.0%
! ATGAGTTTTGCAGTGTAGGT+TGG - Chr7:75008599-75008618 MsG0780040256.01.T01:intron 40.0%
! CATCATCTATGGTCTTACCA+TGG - Chr7:75006947-75006966 MsG0780040256.01.T01:intron 40.0%
! GCCAATGAGGAAAGCATAAA+TGG + Chr7:75007951-75007970 None:intergenic 40.0%
! GGTGCATTCTGTTTTCTTAG+TGG - Chr7:75007845-75007864 MsG0780040256.01.T01:CDS 40.0%
! GTTGTGTGTTTCTGTCATGA+TGG + Chr7:75006395-75006414 None:intergenic 40.0%
! TCCAATGAGTTTTGCAGTGT+AGG - Chr7:75008595-75008614 MsG0780040256.01.T01:intron 40.0%
! TCTGCATTGAGTTTGGTAGT+TGG - Chr7:75007161-75007180 MsG0780040256.01.T01:intron 40.0%
! TTTCCTCATTGGCTATTTCC+TGG - Chr7:75007958-75007977 MsG0780040256.01.T01:CDS 40.0%
! TTTCTTGTGTCTGGAATTGG+CGG - Chr7:75007350-75007369 MsG0780040256.01.T01:CDS 40.0%
!! AGAGTTTGTTGTTGAACCTG+TGG + Chr7:75006417-75006436 None:intergenic 40.0%
!! GCAATTTGTTGTCTTGTGAG+TGG - Chr7:75007881-75007900 MsG0780040256.01.T01:CDS 40.0%
!! TTTCTTAGTGGTGTTGCAGT+GGG - Chr7:75007857-75007876 MsG0780040256.01.T01:CDS 40.0%
!!! CTGCTAGTTTGGTTCTGTTT+TGG + Chr7:75007388-75007407 None:intergenic 40.0%
!!! TACTGCTGTTTTCTTGTGTC+TGG - Chr7:75007341-75007360 MsG0780040256.01.T01:CDS 40.0%
!!! TTTTCTTAGTGGTGTTGCAG+TGG - Chr7:75007856-75007875 MsG0780040256.01.T01:CDS 40.0%
ACAGTATGTGGGGGAATTCT+TGG - Chr7:75007026-75007045 MsG0780040256.01.T01:intron 45.0%
ACCAATGAGGCAAAACCAGT+AGG + Chr7:75006269-75006288 None:intergenic 45.0%
ACTGTTGATGCAAGAAGTGG+AGG + Chr7:75007011-75007030 None:intergenic 45.0%
ATGGCCACAAGCATGTGTTT+CGG - Chr7:75008629-75008648 MsG0780040256.01.T01:intron 45.0%
CCCATTGCACACGTTAACAA+TGG + Chr7:75007119-75007138 None:intergenic 45.0%
CTGTTGATGCAAGAAGTGGA+GGG + Chr7:75007010-75007029 None:intergenic 45.0%
CTTGCATCAACAGTATGTGG+GGG - Chr7:75007017-75007036 MsG0780040256.01.T01:intron 45.0%
CTTTGTCAACACACCAACAG+TGG - Chr7:75006845-75006864 MsG0780040256.01.T01:intron 45.0%
GAGTCAAATTGAGTGCTCTG+TGG + Chr7:75008681-75008700 None:intergenic 45.0%
GCAGTGATTCAATCCCTCTA+TGG - Chr7:75007203-75007222 MsG0780040256.01.T01:intron 45.0%
GTGACAAAGGGGAATAGATG+GGG - Chr7:75007713-75007732 MsG0780040256.01.T01:CDS 45.0%
GTTGTCTTGTGAGTGGAATC+TGG - Chr7:75007888-75007907 MsG0780040256.01.T01:CDS 45.0%
TAAGCCGAAACACATGCTTG+TGG + Chr7:75008636-75008655 None:intergenic 45.0%
TGACAGAAACACACAACCAC+AGG - Chr7:75006398-75006417 MsG0780040256.01.T01:three_prime_UTR 45.0%
TGATCATACTGAGCCTTGGA+TGG - Chr7:75007423-75007442 MsG0780040256.01.T01:CDS 45.0%
TGTACAAACAGCGTATTGCG+CGG - Chr7:75006714-75006733 MsG0780040256.01.T01:intron 45.0%
TTTCTTGCTCCCTACCAATG+AGG + Chr7:75006282-75006301 None:intergenic 45.0%
TTTGGACGAGCTTATGGAAG+CGG - Chr7:75008114-75008133 MsG0780040256.01.T01:CDS 45.0%
! AGTGTAGGTTGGCTATTGCA+TGG - Chr7:75008610-75008629 MsG0780040256.01.T01:intron 45.0%
! TTCTTGGTTTGACGTGGCAA+TGG - Chr7:75007042-75007061 MsG0780040256.01.T01:intron 45.0%
!! ACTGTTTTTCCTGCCACTGT+TGG + Chr7:75006861-75006880 None:intergenic 45.0%
!! AGATGGGGTTTTGTGCATGT+TGG - Chr7:75007728-75007747 MsG0780040256.01.T01:CDS 45.0%
!! GCAACAAGCAAGCTTGTTGA+GGG + Chr7:75006559-75006578 None:intergenic 45.0%
!! TGCAACAAGCAAGCTTGTTG+AGG + Chr7:75006560-75006579 None:intergenic 45.0%
!!! ACTGGTTTTGCCTCATTGGT+AGG - Chr7:75006269-75006288 MsG0780040256.01.T01:three_prime_UTR 45.0%
!!! CTGGTTTTGCCTCATTGGTA+GGG - Chr7:75006270-75006289 MsG0780040256.01.T01:three_prime_UTR 45.0%
!!! TCCTACTGGTTTTGCCTCAT+TGG - Chr7:75006265-75006284 MsG0780040256.01.T01:three_prime_UTR 45.0%
AAAGCCTCGGAAGAGTCCAA+TGG + Chr7:75007606-75007625 None:intergenic 50.0%
ACCACTTCTCAGGGTGGAAA+TGG + Chr7:75006986-75007005 None:intergenic 50.0%
ACCATTTCCACCCTGAGAAG+TGG - Chr7:75006982-75007001 MsG0780040256.01.T01:intron 50.0%
ACCGACCCAACAACCATAGA+GGG + Chr7:75007219-75007238 None:intergenic 50.0%
ACTTCTCAGGGTGGAAATGG+TGG + Chr7:75006983-75007002 None:intergenic 50.0%
AGAGTCCAATGGTAGGGACT+AGG + Chr7:75007595-75007614 None:intergenic 50.0%
CAATCCGTGATCGACAACAC+AGG + Chr7:75006627-75006646 None:intergenic 50.0%
CGATCAACGAGTCTGATTGG+AGG - Chr7:75007629-75007648 MsG0780040256.01.T01:CDS 50.0%
CGTCGCTTCTTGTGACAAAG+GGG - Chr7:75007702-75007721 MsG0780040256.01.T01:CDS 50.0%
CTCGGAAGAGTCCAATGGTA+GGG + Chr7:75007601-75007620 None:intergenic 50.0%
CTTCTCAGGGTGGAAATGGT+GGG + Chr7:75006982-75007001 None:intergenic 50.0%
GAACCTGCATAGTCCATCCA+AGG + Chr7:75007439-75007458 None:intergenic 50.0%
GCGTCGCTTCTTGTGACAAA+GGG - Chr7:75007701-75007720 MsG0780040256.01.T01:CDS 50.0%
TACCGACCCAACAACCATAG+AGG + Chr7:75007220-75007239 None:intergenic 50.0%
TCCAATGGTAGGGACTAGGA+TGG + Chr7:75007591-75007610 None:intergenic 50.0%
TCCATCCTAGTCCCTACCAT+TGG - Chr7:75007587-75007606 MsG0780040256.01.T01:CDS 50.0%
TCCCTCTATGGTTGTTGGGT+CGG - Chr7:75007215-75007234 MsG0780040256.01.T01:intron 50.0%
TGAAGCTGCTCCAAACGTAC+TGG + Chr7:75008711-75008730 None:intergenic 50.0%
TGCGTCGCTTCTTGTGACAA+AGG - Chr7:75007700-75007719 MsG0780040256.01.T01:CDS 50.0%
TGCTAGTAGGTAGCCGGTAT+AGG + Chr7:75008076-75008095 None:intergenic 50.0%
! GGGGAATTCTTGGTTTGACG+TGG - Chr7:75007036-75007055 MsG0780040256.01.T01:intron 50.0%
!!! AAGCGCTTGGTTTTAGCAGG+AGG + Chr7:75007290-75007309 None:intergenic 50.0%
!!! GCTAAGCGCTTGGTTTTAGC+AGG + Chr7:75007293-75007312 None:intergenic 50.0%
ATGGATCATTGCACGCCACC+CGG - Chr7:75007061-75007080 MsG0780040256.01.T01:intron 55.0%
CCTACCATTGGACTCTTCCG+AGG - Chr7:75007599-75007618 MsG0780040256.01.T01:CDS 55.0%
CCTCGGAAGAGTCCAATGGT+AGG + Chr7:75007602-75007621 None:intergenic 55.0%
GCGCGATCAACGAGTCTGAT+TGG - Chr7:75007626-75007645 MsG0780040256.01.T01:CDS 55.0%
GCTCTGTGGGTTCTCTGCAT+AGG + Chr7:75008667-75008686 None:intergenic 55.0%
GTCAACACACCAACAGTGGC+AGG - Chr7:75006849-75006868 MsG0780040256.01.T01:intron 55.0%
TCGTTGATCGCGCAAAGCCT+CGG + Chr7:75007619-75007638 None:intergenic 55.0%
! ATGGTGGGAGGAAGAGTCCA+TGG + Chr7:75006967-75006986 None:intergenic 55.0%
!! AGTGGAGGGTACCACTTCTC+AGG + Chr7:75006996-75007015 None:intergenic 55.0%
!! GAGCCTTGGATGGACTATGC+AGG - Chr7:75007433-75007452 MsG0780040256.01.T01:CDS 55.0%
!! GTGGAGGGTACCACTTCTCA+GGG + Chr7:75006995-75007014 None:intergenic 55.0%
CATTGCACGCCACCCGGAAA+AGG - Chr7:75007067-75007086 MsG0780040256.01.T01:intron 60.0%
! AGGCGCTCAGGGCAGCATTT+TGG - Chr7:75007087-75007106 MsG0780040256.01.T01:intron 60.0%
! CTCAGGGTGGAAATGGTGGG+AGG + Chr7:75006979-75006998 None:intergenic 60.0%
!! GAGGGTACCACTTCTCAGGG+TGG + Chr7:75006992-75007011 None:intergenic 60.0%
! CTGCCCTGAGCGCCTTTTCC+GGG + Chr7:75007082-75007101 None:intergenic 65.0%
! GCTGCCCTGAGCGCCTTTTC+CGG + Chr7:75007083-75007102 None:intergenic 65.0%
!! CCACCCGGAAAAGGCGCTCA+GGG - Chr7:75007076-75007095 MsG0780040256.01.T01:intron 65.0%
! CCCTGAGCGCCTTTTCCGGG+TGG + Chr7:75007079-75007098 None:intergenic 70.0%
!! GCCACCCGGAAAAGGCGCTC+AGG - Chr7:75007075-75007094 MsG0780040256.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 75006256 75008967 75006256 ID=MsG0780040256.01;Name=MsG0780040256.01
Chr7 mRNA 75006256 75008967 75006256 ID=MsG0780040256.01.T01;Parent=MsG0780040256.01;Name=MsG0780040256.01.T01;_AED=0.04;_eAED=0.04;_QI=119|1|1|1|0.5|0.33|3|200|458
Chr7 exon 75006256 75006611 75006256 ID=MsG0780040256.01.T01:exon:14198;Parent=MsG0780040256.01.T01
Chr7 exon 75007244 75008392 75007244 ID=MsG0780040256.01.T01:exon:14197;Parent=MsG0780040256.01.T01
Chr7 exon 75008777 75008967 75008777 ID=MsG0780040256.01.T01:exon:14196;Parent=MsG0780040256.01.T01
Chr7 five_prime_UTR 75008849 75008967 75008849 ID=MsG0780040256.01.T01:five_prime_utr;Parent=MsG0780040256.01.T01
Chr7 CDS 75008777 75008848 75008777 ID=MsG0780040256.01.T01:cds;Parent=MsG0780040256.01.T01
Chr7 CDS 75007244 75008392 75007244 ID=MsG0780040256.01.T01:cds;Parent=MsG0780040256.01.T01
Chr7 CDS 75006456 75006611 75006456 ID=MsG0780040256.01.T01:cds;Parent=MsG0780040256.01.T01
Chr7 three_prime_UTR 75006256 75006455 75006256 ID=MsG0780040256.01.T01:three_prime_utr;Parent=MsG0780040256.01.T01
Gene Sequence

>MsG0780040256.01.T01

ATGGCCACCTTGAATAACCATCATGACAGAAACACACAACCACAGGTTCAACAACAAACTCTTCACATTGAGGCACAAGATTCAAGCTTTGTCAACACACCAACAGTGGCAGGAAAAACAGTCAGAAAGCTATTTCAGATTCTTTTCTACTTGTATCTGGTTCTGATTTCAATCTTGGTGATTTTCATCATCATCTATGGTCTTACCATGGACTCTTCCTCCCACCATTTCCACCCTGAGAAGTGGTACCCTCCACTTCTTGCATCAACAGTATGTGGGGGAATTCTTGGTTTGACGTGGCAATGGATCATTGCACGCCACCCGGAAAAGGCGCTCAGGGCAGCATTTTGGTTGAGTCCATTGTTAACGTGTGCAATGGGAATTCTGTTTGTGTTAATTGGTTCTGCATTGAGTTTGGTAGTTGGTATAGTTTCTTTGATTTCTGCAGTGATTCAATCCCTCTATGGTTGTTGGGTCGGTAAGAGATTCGTCTACGCCACTGAAATCTTATTGGTTTCTAAAGCTTCTCCTCCTGCTAAAACCAAGCGCTTAGCATGTTCTTTAACTGTCATCGGTATCATTTACTGCTGTTTTCTTGTGTCTGGAATTGGCGGCGCAAAAGCTATCCAAAACAGAACCAAACTAGCAGACATTTGCATCTTAGTGATCATACTGAGCCTTGGATGGACTATGCAGGTTCTAAAGAATGCAATACAAGTCACAGTTTCAAGGGTTAAGTATATGCATTTTTCTGGAGGAGGTGACATAGACCTCAGAGTTGCATTTTGTGACACAGTCAAGCACTTAATTGGAAGTGTTTGTATAGGCTCCATCCTAGTCCCTACCATTGGACTCTTCCGAGGCTTTGCGCGATCAACGAGTCTGATTGGAGGTGAAACAAATGAGTGCATGTTTTCTTGTGTTAGTTGTTCGATGGGAATTGCGTCGCTTCTTGTGACAAAGGGGAATAGATGGGGTTTTGTGCATGTTGGAGTTTATAACAAAGGGTTTGTGCAAGCATCTTCTGATACTTGGGACATGTTCATTAGAGTTGGATTAGAGGAATTGATAGATTTGGATCTCACTGGTGCATTCTGTTTTCTTAGTGGTGTTGCAGTGGGTGCAATTTGTTGTCTTGTGAGTGGAATCTGGAGTCTTGTAGTGTACAAGAACTATGCCATGGAATTATCCATTTATGCTTTCCTCATTGGCTATTTCCTGTGTAGGTTGGCTATTGCATGGCCACAAGCATGTGTTTCGGCTTACTATGTGGCCTATGCAGAGAACCCACAGAGCACTCAATTTGACTCAACTATTCCAGTACGTTTGGAGCAGCTTCACAGATCTCAAGCTATACAAAGATCTTCCAGAGCTTAA
Protein sequence

>MsG0780040256.01.T01

MATLNNHHDRNTQPQVQQQTLHIEAQDSSFVNTPTVAGKTVRKLFQILFYLYLVLISILVIFIIIYGLTMDSSSHHFHPEKWYPPLLASTVCGGILGLTWQWIIARHPEKALRAAFWLSPLLTCAMGILFVLIGSALSLVVGIVSLISAVIQSLYGCWVGKRFVYATEILLVSKASPPAKTKRLACSLTVIGIIYCCFLVSGIGGAKAIQNRTKLADICILVIILSLGWTMQVLKNAIQVTVSRVKYMHFSGGGDIDLRVAFCDTVKHLIGSVCIGSILVPTIGLFRGFARSTSLIGGETNECMFSCVSCSMGIASLLVTKGNRWGFVHVGVYNKGFVQASSDTWDMFIRVGLEELIDLDLTGAFCFLSGVAVGAICCLVSGIWSLVVYKNYAMELSIYAFLIGYFLCRLAIAWPQACVSAYYVAYAENPQSTQFDSTIPVRLEQLHRSQAIQRSSRA*