AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040310.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040310.01.T01 MTR_7g088090 89.375 320 6 1 1 292 1 320 0.0 576
MsG0780040310.01.T01 MTR_6g026800 54.848 330 102 9 1 292 1 321 2.90e-93 279
MsG0780040310.01.T01 MTR_3g010660 42.089 316 127 9 16 290 20 320 4.92e-63 202
MsG0780040310.01.T01 MTR_8g043960 43.322 307 129 9 15 292 23 313 2.14e-62 200
MsG0780040310.01.T01 MTR_4g085910 31.672 341 127 11 16 264 18 344 1.48e-30 118
MsG0780040310.01.T01 MTR_2g086390 34.322 236 96 8 49 270 70 260 4.00e-24 99.4
MsG0780040310.01.T01 MTR_2g086390 33.478 230 95 6 49 265 70 254 1.03e-23 98.2
MsG0780040310.01.T01 MTR_5g088230 57.647 85 35 1 206 290 184 267 2.44e-19 85.9
MsG0780040310.01.T01 MTR_5g088230 57.647 85 35 1 206 290 179 262 2.75e-19 85.5
MsG0780040310.01.T01 MTR_2g086340 37.778 225 99 9 57 265 86 285 1.93e-17 81.3
MsG0780040310.01.T01 MTR_3g101780 67.213 61 19 1 207 267 339 398 5.52e-17 80.9
MsG0780040310.01.T01 MTR_5g060990 28.723 282 137 11 20 255 41 304 7.60e-17 79.3
MsG0780040310.01.T01 MTR_7g015990 76.596 47 8 1 221 264 120 166 5.43e-13 66.6
MsG0780040310.01.T01 MTR_8g075130 62.963 54 17 1 214 264 98 151 1.45e-12 65.1
MsG0780040310.01.T01 MTR_5g022780 31.004 229 116 9 70 264 1 221 5.53e-12 64.7
MsG0780040310.01.T01 MTR_4g094390 60.714 56 22 0 208 263 117 172 7.75e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040310.01.T01 AT3G56850 50.154 325 101 11 1 292 1 297 1.88e-83 253
MsG0780040310.01.T01 AT2G41070 47.078 308 101 12 1 292 10 271 1.09e-70 219
MsG0780040310.01.T01 AT2G41070 47.078 308 101 12 1 292 1 262 1.18e-70 219
MsG0780040310.01.T01 AT2G41070 47.078 308 101 12 1 292 1 262 1.18e-70 219
MsG0780040310.01.T01 AT2G41070 47.078 308 101 12 1 292 1 262 1.18e-70 219
MsG0780040310.01.T01 AT2G41070 45.196 281 92 12 1 265 1 235 2.44e-55 179
MsG0780040310.01.T01 AT1G45249 53.153 111 37 5 189 291 312 415 3.70e-20 90.1
MsG0780040310.01.T01 AT1G45249 53.153 111 37 5 189 291 327 430 3.78e-20 90.1
MsG0780040310.01.T01 AT1G45249 53.153 111 37 5 189 291 327 430 3.78e-20 90.1
MsG0780040310.01.T01 AT2G36270 70.149 67 18 2 205 270 341 406 2.03e-18 85.1
MsG0780040310.01.T01 AT2G36270 70.149 67 18 2 205 270 341 406 2.14e-18 85.1
MsG0780040310.01.T01 AT2G36270 70.149 67 18 2 205 270 341 406 2.14e-18 85.1
MsG0780040310.01.T01 AT4G34000 48.113 106 44 3 169 264 312 416 1.05e-17 83.2
MsG0780040310.01.T01 AT4G34000 48.113 106 44 3 169 264 312 416 1.26e-17 83.2
MsG0780040310.01.T01 AT4G34000 48.113 106 44 3 169 264 312 416 1.26e-17 83.2
MsG0780040310.01.T01 AT4G34000 48.113 106 44 3 169 264 312 416 1.26e-17 83.2
MsG0780040310.01.T01 AT4G35900 56.579 76 32 1 217 292 211 285 2.25e-17 80.9
MsG0780040310.01.T01 AT3G44460 32.281 285 135 9 16 267 35 294 2.56e-17 81.3
MsG0780040310.01.T01 AT1G45249 48.361 122 37 6 189 291 312 426 2.67e-17 82.0
MsG0780040310.01.T01 AT2G17770 55.556 72 31 1 221 292 125 195 4.51e-15 72.8
MsG0780040310.01.T01 AT1G49720 52.632 95 35 4 206 291 298 391 8.13e-15 74.3
MsG0780040310.01.T01 AT1G49720 52.632 95 35 4 206 291 298 391 8.13e-15 74.3
MsG0780040310.01.T01 AT3G19290 65.306 49 17 0 216 264 347 395 1.33e-13 70.9
MsG0780040310.01.T01 AT1G49720 64.407 59 20 1 206 264 298 355 1.45e-13 70.9
MsG0780040310.01.T01 AT1G03970 31.220 205 83 7 68 269 85 234 1.68e-13 69.7
MsG0780040310.01.T01 AT3G19290 65.306 49 17 0 216 264 347 395 1.69e-13 70.9
MsG0780040310.01.T01 AT3G19290 65.306 49 17 0 216 264 347 395 1.69e-13 70.9
MsG0780040310.01.T01 AT3G19290 65.306 49 17 0 216 264 347 395 1.73e-13 70.9
MsG0780040310.01.T01 AT5G44080 29.536 237 108 8 68 289 120 312 2.42e-13 69.7
MsG0780040310.01.T01 AT5G42910 42.991 107 51 5 190 289 264 367 5.86e-11 62.8

Find 89 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCATGGTCAACTGGCTTC+TGG 0.131375 7:-75788766 MsG0780040310.01.T01:CDS
CTGAAGCTGCTGCAAGGTTC+TGG 0.133053 7:-75788820 MsG0780040310.01.T01:intron
ATGAATCCATTGACACTTTC+TGG 0.149546 7:-75788736 MsG0780040310.01.T01:CDS
TTATGGCTTTATTACCATTT+TGG 0.161501 7:-75786045 MsG0780040310.01.T01:three_prime_UTR
CAAGGTTCTGGGTTGGATTC+TGG 0.161848 7:-75788808 MsG0780040310.01.T01:CDS
TTTGTCACCGTCTTCTTTAA+TGG 0.283520 7:-75788335 MsG0780040310.01.T01:CDS
TGTGGTTCAACAGCCTGTTT+TGG 0.318849 7:-75788386 MsG0780040310.01.T01:CDS
AGAAAACTATTGATGAGGTT+TGG 0.366361 7:-75788702 MsG0780040310.01.T01:CDS
TGAAGCTGCTGCAAGGTTCT+GGG 0.406826 7:-75788819 MsG0780040310.01.T01:intron
GTTCTGCGAAGCTGATGCTT+AGG 0.411723 7:+75786340 None:intergenic
GGGTCTGGTGGTGGCATACT+TGG 0.413639 7:+75786361 None:intergenic
CACAAACTCAAGGTAGGAAA+AGG 0.414409 7:-75788297 MsG0780040310.01.T01:CDS
TCGGTCGCGGGCTAGAAAAC+AGG 0.419550 7:-75788197 MsG0780040310.01.T01:intron
AGAACAAAAGACTGGAACTT+TGG 0.437900 7:-75788959 MsG0780040310.01.T01:CDS
GTGTATCCTGCATCCAAAAC+AGG 0.438961 7:+75788373 None:intergenic
TTACATGCAGCATGGTCAAC+TGG 0.446389 7:-75788773 MsG0780040310.01.T01:CDS
TGCTGGGTAAACTGAAAGTC+TGG 0.447007 7:+75786106 None:intergenic
GGGAATCTGCAGCTCGGTCG+CGG 0.454529 7:-75788210 MsG0780040310.01.T01:CDS
AGCATGGTCAACTGGCTTCT+GGG 0.456125 7:-75788765 MsG0780040310.01.T01:CDS
ACGCTCAAGTATCCAACAAC+TGG 0.461162 7:-75786220 MsG0780040310.01.T01:three_prime_UTR
CTGATGCATATATATAGTGC+TGG 0.462398 7:+75786089 None:intergenic
AGCAAATGCTAAAGAACTGC+TGG 0.466698 7:+75786255 None:intergenic
TTTGCAATAAAGTCTTCAAA+GGG 0.467582 7:+75786306 None:intergenic
ATACATCCCAGCATGGTCAT+TGG 0.471305 7:-75788513 MsG0780040310.01.T01:CDS
TTCTGCGAAGCTGATGCTTA+GGG 0.478401 7:+75786341 None:intergenic
ATTCGCACCACACAGACAAC+AGG 0.488019 7:+75786018 None:intergenic
ATTTGCAATAAAGTCTTCAA+AGG 0.492126 7:+75786305 None:intergenic
CTGTGGAGAGGAGGCAGAAG+AGG 0.493448 7:-75788246 MsG0780040310.01.T01:CDS
GGCTTATAAAATGTACATAC+AGG 0.493849 7:+75786127 None:intergenic
GAGGATTTCTTGATGAAAGC+TGG 0.496759 7:-75788610 MsG0780040310.01.T01:CDS
TAAAGAACTGCTGGAGCGCT+TGG 0.497363 7:+75786264 None:intergenic
TGATGCTGATGTTGTTGTTG+TGG 0.499071 7:+75788460 None:intergenic
AGTGAGGATAATGCTATGTC+AGG 0.499581 7:-75788565 MsG0780040310.01.T01:CDS
GCTGCTGCAAGGTTCTGGGT+TGG 0.509312 7:-75788815 MsG0780040310.01.T01:CDS
AGATCACCAGAAAGTGTCAA+TGG 0.510245 7:+75788730 None:intergenic
TGTTGTGGTTGCTGCACTGA+AGG 0.512843 7:+75788475 None:intergenic
CATCAGAATAATATGATGAC+TGG 0.520032 7:-75788433 MsG0780040310.01.T01:CDS
ACAGGCTTACACGCAAGAGC+TGG 0.521050 7:-75788081 MsG0780040310.01.T01:intron
GGAATCTGCAGCTCGGTCGC+GGG 0.521215 7:-75788209 MsG0780040310.01.T01:CDS
AAGGGTTGCCTCTGGTGTTG+TGG 0.526242 7:-75788278 MsG0780040310.01.T01:CDS
GGTAGGAAAAGGGTTGCCTC+TGG 0.527641 7:-75788286 MsG0780040310.01.T01:CDS
CGAAGCTGATGCTTAGGGTC+TGG 0.529237 7:+75786346 None:intergenic
GTTGTGGTTGCTGCACTGAA+GGG 0.529499 7:+75788476 None:intergenic
ACAGAAGAAGAGTGCTACTC+AGG 0.538779 7:-75788668 MsG0780040310.01.T01:CDS
ACAAACTCAAGGTAGGAAAA+GGG 0.545104 7:-75788296 MsG0780040310.01.T01:CDS
ATGCTGCATGTAACCATCAC+TGG 0.546349 7:+75788783 None:intergenic
AGAAGAGTGCTACTCAGGAT+AGG 0.549626 7:-75788663 MsG0780040310.01.T01:CDS
ATGCTACGGTTAATTATCGC+TGG 0.553161 7:-75786175 MsG0780040310.01.T01:three_prime_UTR
AAAAGACTGGAACTTTGGCT+AGG 0.557530 7:-75788954 MsG0780040310.01.T01:CDS
CAGATACACAAACTCAAGGT+AGG 0.558085 7:-75788303 MsG0780040310.01.T01:CDS
GCAATCCAAGAACAAAAGAC+TGG 0.559028 7:-75788967 MsG0780040310.01.T01:CDS
TGGTTTAAACTAACTTCATG+AGG 0.566973 7:-75785953 MsG0780040310.01.T01:three_prime_UTR
TGATGCTTAGGGTCTGGTGG+TGG 0.567579 7:+75786352 None:intergenic
ATTTAGAAGAAGAGAATGAA+AGG 0.569359 7:-75788043 MsG0780040310.01.T01:CDS
GTACAATCTCACATTTGATG+AGG 0.569368 7:-75788920 MsG0780040310.01.T01:intron
GTTGCTGCACTGAAGGGACT+TGG 0.573952 7:+75788482 None:intergenic
CAGGAAAACACTTTCGAAGA+GGG 0.574231 7:+75786146 None:intergenic
TAGTAAGAAAACTATTGATG+AGG 0.581872 7:-75788707 MsG0780040310.01.T01:CDS
ACTGCATCCAATGACCATGC+TGG 0.582214 7:+75788506 None:intergenic
TTGGATTCTGGAACCAGTGA+TGG 0.584696 7:-75788796 MsG0780040310.01.T01:CDS
AGGATAATGCTATGTCAGGA+AGG 0.586500 7:-75788561 MsG0780040310.01.T01:CDS
CACTGAATCATTTCCTAGTG+AGG 0.587073 7:-75788581 MsG0780040310.01.T01:CDS
AGCTGATGCTTAGGGTCTGG+TGG 0.587120 7:+75786349 None:intergenic
GGACCTCTGAAGCTGCTGCA+AGG 0.593869 7:-75788826 MsG0780040310.01.T01:intron
AAAGACTGGAACTTTGGCTA+GGG 0.596011 7:-75788953 MsG0780040310.01.T01:CDS
AGGTTATATGACTGGTCATG+TGG 0.602596 7:-75788404 MsG0780040310.01.T01:CDS
TGATGCATATATATAGTGCT+GGG 0.607050 7:+75786090 None:intergenic
CTGCATCCAATGACCATGCT+GGG 0.608106 7:+75788507 None:intergenic
ACTGGAACTTTGGCTAGGGA+AGG 0.612277 7:-75788949 MsG0780040310.01.T01:CDS
TTGAGAAAACTGTGGAGAGG+AGG 0.618222 7:-75788255 MsG0780040310.01.T01:CDS
ACAGGAAAACACTTTCGAAG+AGG 0.620950 7:+75786145 None:intergenic
AAAATAGGGAATCTGCAGCT+CGG 0.624873 7:-75788216 MsG0780040310.01.T01:CDS
TACACTTGGTGAGATGACTC+TGG 0.627462 7:-75788632 MsG0780040310.01.T01:CDS
GATAGGAGAACAGCTACACT+TGG 0.637974 7:-75788646 MsG0780040310.01.T01:CDS
TCATCAGATACACAAACTCA+AGG 0.638560 7:-75788307 MsG0780040310.01.T01:CDS
GAAGTAGCCATTAAAGAAGA+CGG 0.641922 7:+75788328 None:intergenic
TTGAAAATGGGATCTCATGG+AGG 0.642088 7:-75788991 None:intergenic
TTTCTTGATGAAAGCTGGTG+TGG 0.647086 7:-75788605 MsG0780040310.01.T01:CDS
CTCACTAGGAAATGATTCAG+TGG 0.653229 7:+75788582 None:intergenic
TTTCTCAACCACAACACCAG+AGG 0.653421 7:+75788270 None:intergenic
TGCAGGATACACTGAAGCAA+TGG 0.653801 7:-75788362 MsG0780040310.01.T01:CDS
GGATAATGCTATGTCAGGAA+GGG 0.659996 7:-75788560 MsG0780040310.01.T01:CDS
GACATAGCATTATCCTCACT+AGG 0.666638 7:+75788568 None:intergenic
AGTGATGGTTACATGCAGCA+TGG 0.680149 7:-75788781 MsG0780040310.01.T01:CDS
CAACAAAATACATCCCAGCA+TGG 0.680747 7:-75788520 MsG0780040310.01.T01:CDS
TGGTTGAGAAAACTGTGGAG+AGG 0.682616 7:-75788258 MsG0780040310.01.T01:CDS
TTGCAATAAAGTCTTCAAAG+GGG 0.695239 7:+75786307 None:intergenic
ACTTGGTGAGATGACTCTGG+AGG 0.705699 7:-75788629 MsG0780040310.01.T01:CDS
TGTTGTGGTTGAGAAAACTG+TGG 0.749971 7:-75788263 MsG0780040310.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTATATAATAAAAATGATG+TGG - Chr7:75788117-75788136 MsG0780040310.01.T01:intron 15.0%
!!! AGTTTTCATTATTTCAAAAT+TGG - Chr7:75787705-75787724 MsG0780040310.01.T01:intron 15.0%
!!! ATTTTGTTAAATCATATAGA+AGG - Chr7:75787385-75787404 MsG0780040310.01.T01:intron 15.0%
!!! GTTTTCATTATTTCAAAATT+GGG - Chr7:75787706-75787725 MsG0780040310.01.T01:intron 15.0%
!! AAAACTTCAAGAAAGAATAA+AGG + Chr7:75787154-75787173 None:intergenic 20.0%
!! ATTCCTAATTGAATTACTTA+AGG + Chr7:75788427-75788446 None:intergenic 20.0%
!! CAAAAATATGATTCAATAAC+TGG - Chr7:75787101-75787120 MsG0780040310.01.T01:intron 20.0%
!! TATGATTTAACAAAATTGAC+AGG + Chr7:75787381-75787400 None:intergenic 20.0%
!!! TAAATCATATAGAAGGTTTT+TGG - Chr7:75787392-75787411 MsG0780040310.01.T01:intron 20.0%
!!! TATATAGATGTTTTCAGAAA+TGG + Chr7:75788105-75788124 None:intergenic 20.0%
! AAACAGATCATAAAGCAAAA+AGG + Chr7:75788180-75788199 None:intergenic 25.0%
! AAATCAGAGATAAATGATCA+AGG + Chr7:75788319-75788338 None:intergenic 25.0%
! AACTTAACAATGTATGAAGT+AGG + Chr7:75787689-75787708 None:intergenic 25.0%
! AAGAAATAGAATGTTTACAC+TGG - Chr7:75787069-75787088 MsG0780040310.01.T01:intron 25.0%
! AATAAAGTATAGATGCAAAC+TGG + Chr7:75786940-75786959 None:intergenic 25.0%
! AATAATAACGCTAACTGAAA+CGG + Chr7:75787131-75787150 None:intergenic 25.0%
! AATGGTATAATAACTAACCA+GGG + Chr7:75787591-75787610 None:intergenic 25.0%
! AGAAGAGGATGATTAAAAAT+AGG - Chr7:75786692-75786711 MsG0780040310.01.T01:intron 25.0%
! ATGTCTCAATAAAAGCTAAA+TGG + Chr7:75787495-75787514 None:intergenic 25.0%
! ATTTAGAAGAAGAGAATGAA+AGG - Chr7:75786880-75786899 MsG0780040310.01.T01:intron 25.0%
! ATTTGCAATAAAGTCTTCAA+AGG + Chr7:75788621-75788640 None:intergenic 25.0%
! CAAAATAGAGATTCATGTTA+AGG + Chr7:75787180-75787199 None:intergenic 25.0%
! CAACCTTAAGTAATTCAATT+AGG - Chr7:75788421-75788440 MsG0780040310.01.T01:CDS 25.0%
! CAGGAAAGGATAAATATTAA+TGG + Chr7:75787911-75787930 None:intergenic 25.0%
! GAAGAGGATGATTAAAAATA+GGG - Chr7:75786693-75786712 MsG0780040310.01.T01:intron 25.0%
! TAGTAAGAAAACTATTGATG+AGG - Chr7:75786216-75786235 MsG0780040310.01.T01:three_prime_UTR 25.0%
! TTTGCAATAAAGTCTTCAAA+GGG + Chr7:75788620-75788639 None:intergenic 25.0%
!!! GTAGTCATTGTTTTTGTTAA+TGG - Chr7:75786779-75786798 MsG0780040310.01.T01:intron 25.0%
!!! TAGAAAGTACTCTTGTTTAA+TGG - Chr7:75787803-75787822 MsG0780040310.01.T01:intron 25.0%
!!! TATGGCTTTATTACCATTTT+GGG - Chr7:75788879-75788898 MsG0780040310.01.T01:intron 25.0%
!!! TTATGGCTTTATTACCATTT+TGG - Chr7:75788878-75788897 MsG0780040310.01.T01:intron 25.0%
!!! TTTGTTTTGTTGAGAATTTG+TGG - Chr7:75788028-75788047 MsG0780040310.01.T01:CDS 25.0%
AAAAATAGCTTTCCAGTTGT+TGG + Chr7:75788718-75788737 None:intergenic 30.0%
AACTAACAAAAGCTTGTGAT+AGG + Chr7:75787871-75787890 None:intergenic 30.0%
AGAAAACTATTGATGAGGTT+TGG - Chr7:75786221-75786240 MsG0780040310.01.T01:three_prime_UTR 30.0%
AGGAAATGTTCAAAAATCTG+CGG + Chr7:75787775-75787794 None:intergenic 30.0%
ATCTAGATTCATGCTTCTAA+GGG + Chr7:75786057-75786076 None:intergenic 30.0%
ATGACATATATTTGTGTGTG+TGG - Chr7:75786810-75786829 MsG0780040310.01.T01:intron 30.0%
ATGGTATAATAACTAACCAG+GGG + Chr7:75787590-75787609 None:intergenic 30.0%
CAAATCAGCTTGGAAATTTA+GGG - Chr7:75786028-75786047 MsG0780040310.01.T01:three_prime_UTR 30.0%
CAATGGTATAATAACTAACC+AGG + Chr7:75787592-75787611 None:intergenic 30.0%
CATCAGAATAATATGATGAC+TGG - Chr7:75786490-75786509 MsG0780040310.01.T01:intron 30.0%
CGAAAGTTTATGAGATAATC+TGG - Chr7:75787440-75787459 MsG0780040310.01.T01:intron 30.0%
CTATACTTTATTCCTTTGTC+TGG - Chr7:75786948-75786967 MsG0780040310.01.T01:intron 30.0%
GGCTTATAAAATGTACATAC+AGG + Chr7:75788799-75788818 None:intergenic 30.0%
GGTTGAAATGTTAGTTAATG+AGG - Chr7:75787022-75787041 MsG0780040310.01.T01:intron 30.0%
TCAAATCAGCTTGGAAATTT+AGG - Chr7:75786027-75786046 MsG0780040310.01.T01:three_prime_UTR 30.0%
TCCAAAACAATATTCAGGAA+AGG + Chr7:75787925-75787944 None:intergenic 30.0%
TGATGCATATATATAGTGCT+GGG + Chr7:75788836-75788855 None:intergenic 30.0%
TGGTTTAAACTAACTTCATG+AGG - Chr7:75788970-75788989 MsG0780040310.01.T01:CDS 30.0%
TTGCAATAAAGTCTTCAAAG+GGG + Chr7:75788619-75788638 None:intergenic 30.0%
! AAATGATGTGGTGATTTTGA+TGG - Chr7:75788129-75788148 MsG0780040310.01.T01:intron 30.0%
! ACAAGCTTTTGTTAGTTGAT+TGG - Chr7:75787874-75787893 MsG0780040310.01.T01:intron 30.0%
! ATTTTGAACGGAACACATTA+TGG - Chr7:75788861-75788880 MsG0780040310.01.T01:intron 30.0%
! CTGATCTCTAAAAAGTGATT+TGG - Chr7:75788462-75788481 MsG0780040310.01.T01:CDS 30.0%
! TCCTTTCCTGAATATTGTTT+TGG - Chr7:75787921-75787940 MsG0780040310.01.T01:intron 30.0%
! TGCATCAGTGTAATTTTGAA+CGG - Chr7:75788849-75788868 MsG0780040310.01.T01:intron 30.0%
! TGTTTTCAGAAATGGAATGA+AGG + Chr7:75788097-75788116 None:intergenic 30.0%
! TTTGCTTATTAAGCTTTGTG+TGG - Chr7:75787196-75787215 MsG0780040310.01.T01:intron 30.0%
!! CAAGAGTACTTTCTATCAAA+TGG + Chr7:75787798-75787817 None:intergenic 30.0%
!! TAAAGTAACCTTTGAAGTCA+TGG + Chr7:75787974-75787993 None:intergenic 30.0%
!!! ATGGCTTTATTACCATTTTG+GGG - Chr7:75788880-75788899 MsG0780040310.01.T01:intron 30.0%
!!! TGACTTTGTTTTTCTAAAGC+TGG - Chr7:75787833-75787852 MsG0780040310.01.T01:intron 30.0%
!!! TGGAAAGCTATTTTTCTTCT+GGG - Chr7:75788723-75788742 MsG0780040310.01.T01:CDS 30.0%
!!! TGTGACTAGCAAAACTTTTT+TGG - Chr7:75788950-75788969 MsG0780040310.01.T01:CDS 30.0%
!!! TTCCTGAATATTGTTTTGGA+GGG - Chr7:75787925-75787944 MsG0780040310.01.T01:intron 30.0%
!!! TTTCCTGAATATTGTTTTGG+AGG - Chr7:75787924-75787943 MsG0780040310.01.T01:intron 30.0%
!!! TTTTTTCTACCATCTTGTGA+AGG - Chr7:75786991-75787010 MsG0780040310.01.T01:intron 30.0%
AACAATGTATGAAGTAGGAC+AGG + Chr7:75787684-75787703 None:intergenic 35.0%
ACAAACTCAAGGTAGGAAAA+GGG - Chr7:75786627-75786646 MsG0780040310.01.T01:intron 35.0%
AGAACAAAAGACTGGAACTT+TGG - Chr7:75785964-75785983 MsG0780040310.01.T01:three_prime_UTR 35.0%
AGATCAAATGAAAGCTATGC+AGG + Chr7:75787564-75787583 None:intergenic 35.0%
ATGAATCCATTGACACTTTC+TGG - Chr7:75786187-75786206 MsG0780040310.01.T01:three_prime_UTR 35.0%
CATCTAGATTCATGCTTCTA+AGG + Chr7:75786058-75786077 None:intergenic 35.0%
CCAAACAAGCAACATCAAAA+TGG + Chr7:75787294-75787313 None:intergenic 35.0%
CTGATGCATATATATAGTGC+TGG + Chr7:75788837-75788856 None:intergenic 35.0%
GAAGTAGCCATTAAAGAAGA+CGG + Chr7:75786598-75786617 None:intergenic 35.0%
GAGTACTTTCTATCAAATGG+AGG + Chr7:75787795-75787814 None:intergenic 35.0%
GTACAATCTCACATTTGATG+AGG - Chr7:75786003-75786022 MsG0780040310.01.T01:three_prime_UTR 35.0%
TACCCTCCAAAACAATATTC+AGG + Chr7:75787930-75787949 None:intergenic 35.0%
TAGTGGCAACACAAGAAATT+AGG + Chr7:75787746-75787765 None:intergenic 35.0%
TAGTTAATGAGGACTTCAAC+TGG - Chr7:75787033-75787052 MsG0780040310.01.T01:intron 35.0%
TCATCAGATACACAAACTCA+AGG - Chr7:75786616-75786635 MsG0780040310.01.T01:intron 35.0%
TCTAATGGTATGGGTTTCAA+TGG + Chr7:75787609-75787628 None:intergenic 35.0%
TGGTATAATAACTAACCAGG+GGG + Chr7:75787589-75787608 None:intergenic 35.0%
TTCGTGTAAAGATCCATTTC+CGG + Chr7:75787424-75787443 None:intergenic 35.0%
TTTGTCACCGTCTTCTTTAA+TGG - Chr7:75786588-75786607 MsG0780040310.01.T01:intron 35.0%
! AAGTTCCAGTCTTTTGTTCT+TGG + Chr7:75785964-75785983 None:intergenic 35.0%
! TCTATTTCTTAAGCAAGCAC+CGG + Chr7:75787059-75787078 None:intergenic 35.0%
! TGAGTTGCTGAAGAATTTTG+TGG - Chr7:75786076-75786095 MsG0780040310.01.T01:three_prime_UTR 35.0%
!! CCATTTTGATGTTGCTTGTT+TGG - Chr7:75787291-75787310 MsG0780040310.01.T01:intron 35.0%
!! TTTTGATGGTTAAACCTAGC+TGG - Chr7:75788143-75788162 MsG0780040310.01.T01:intron 35.0%
!!! AATATGATGACTGGTTTTGC+AGG - Chr7:75786499-75786518 MsG0780040310.01.T01:intron 35.0%
!!! AGAAGGTTTTTGGCTTTAAC+CGG - Chr7:75787402-75787421 MsG0780040310.01.T01:intron 35.0%
!!! CTGGAAAGCTATTTTTCTTC+TGG - Chr7:75788722-75788741 MsG0780040310.01.T01:CDS 35.0%
!!! GGAAAGCTATTTTTCTTCTG+GGG - Chr7:75788724-75788743 MsG0780040310.01.T01:CDS 35.0%
!!! TGGCTTTATTACCATTTTGG+GGG - Chr7:75788881-75788900 MsG0780040310.01.T01:intron 35.0%
!!! TTTTTGGCTTTAACCGGAAA+TGG - Chr7:75787408-75787427 MsG0780040310.01.T01:intron 35.0%
AAAAGACTGGAACTTTGGCT+AGG - Chr7:75785969-75785988 MsG0780040310.01.T01:three_prime_UTR 40.0%
AAAATAGGGAATCTGCAGCT+CGG - Chr7:75786707-75786726 MsG0780040310.01.T01:intron 40.0%
AAAGACTGGAACTTTGGCTA+GGG - Chr7:75785970-75785989 MsG0780040310.01.T01:three_prime_UTR 40.0%
AAAGCAGCTCAGCAATCTAA+TGG + Chr7:75787624-75787643 None:intergenic 40.0%
ACAAATGTCACACCAGACAA+AGG + Chr7:75786963-75786982 None:intergenic 40.0%
ACAGGAAAACACTTTCGAAG+AGG + Chr7:75788781-75788800 None:intergenic 40.0%
AGCAAATGCTAAAGAACTGC+TGG + Chr7:75788671-75788690 None:intergenic 40.0%
AGCTCAGCAATCTAATGGTA+TGG + Chr7:75787619-75787638 None:intergenic 40.0%
AGGATAATGCTATGTCAGGA+AGG - Chr7:75786362-75786381 MsG0780040310.01.T01:CDS 40.0%
AGTGAGGATAATGCTATGTC+AGG - Chr7:75786358-75786377 MsG0780040310.01.T01:CDS 40.0%
ATGCTACGGTTAATTATCGC+TGG - Chr7:75788748-75788767 MsG0780040310.01.T01:CDS 40.0%
CAACAAAATACATCCCAGCA+TGG - Chr7:75786403-75786422 MsG0780040310.01.T01:intron 40.0%
CACAAACTCAAGGTAGGAAA+AGG - Chr7:75786626-75786645 MsG0780040310.01.T01:intron 40.0%
CACTGAATCATTTCCTAGTG+AGG - Chr7:75786342-75786361 MsG0780040310.01.T01:CDS 40.0%
CAGATACACAAACTCAAGGT+AGG - Chr7:75786620-75786639 MsG0780040310.01.T01:intron 40.0%
CAGGAAAACACTTTCGAAGA+GGG + Chr7:75788780-75788799 None:intergenic 40.0%
CTCACTAGGAAATGATTCAG+TGG + Chr7:75786344-75786363 None:intergenic 40.0%
CTCTAGTGAATCTTTCATGC+AGG - Chr7:75788522-75788541 MsG0780040310.01.T01:CDS 40.0%
GACATAGCATTATCCTCACT+AGG + Chr7:75786358-75786377 None:intergenic 40.0%
GAGGATTTCTTGATGAAAGC+TGG - Chr7:75786313-75786332 MsG0780040310.01.T01:exon 40.0%
GCAATCCAAGAACAAAAGAC+TGG - Chr7:75785956-75785975 MsG0780040310.01.T01:three_prime_UTR 40.0%
GCTCAGCAATCTAATGGTAT+GGG + Chr7:75787618-75787637 None:intergenic 40.0%
GGATAATGCTATGTCAGGAA+GGG - Chr7:75786363-75786382 MsG0780040310.01.T01:CDS 40.0%
GTTGCAGACATAGATAGTTC+TGG + Chr7:75788405-75788424 None:intergenic 40.0%
TGATGAGGTTCAAATCAGCT+TGG - Chr7:75786018-75786037 MsG0780040310.01.T01:three_prime_UTR 40.0%
TGTTGTGGTTGAGAAAACTG+TGG - Chr7:75786660-75786679 MsG0780040310.01.T01:intron 40.0%
TTGTCTGGTGTGACATTTGT+TGG - Chr7:75786963-75786982 MsG0780040310.01.T01:intron 40.0%
TTGTGGTCTAGATGACAAAG+AGG - Chr7:75788045-75788064 MsG0780040310.01.T01:CDS 40.0%
TTTCATTTGATCTTTCCCCC+TGG - Chr7:75787571-75787590 MsG0780040310.01.T01:intron 40.0%
TTTCTTGATGAAAGCTGGTG+TGG - Chr7:75786318-75786337 MsG0780040310.01.T01:exon 40.0%
! AAAATCTGCGGCTCTTTTAG+TGG + Chr7:75787763-75787782 None:intergenic 40.0%
! AGGTTATATGACTGGTCATG+TGG - Chr7:75786519-75786538 MsG0780040310.01.T01:intron 40.0%
! GGTTTTGCAGGTTATATGAC+TGG - Chr7:75786511-75786530 MsG0780040310.01.T01:intron 40.0%
! TCTTTCCAAACTGACTTCCA+TGG + Chr7:75787335-75787354 None:intergenic 40.0%
! TGATGCTGATGTTGTTGTTG+TGG + Chr7:75786466-75786485 None:intergenic 40.0%
! TTTTGCAACCATGCTAACCA+TGG - Chr7:75787315-75787334 MsG0780040310.01.T01:intron 40.0%
!! AGATCACCAGAAAGTGTCAA+TGG + Chr7:75786196-75786215 None:intergenic 40.0%
!! AGTAACCTTTGAAGTCATGG+AGG + Chr7:75787971-75787990 None:intergenic 40.0%
!! TTTTCTTCTGGGGAATGCTA+CGG - Chr7:75788734-75788753 MsG0780040310.01.T01:CDS 40.0%
ACGCTCAAGTATCCAACAAC+TGG - Chr7:75788703-75788722 MsG0780040310.01.T01:CDS 45.0%
AGTGATGGTTACATGCAGCA+TGG - Chr7:75786142-75786161 MsG0780040310.01.T01:three_prime_UTR 45.0%
ATACATCCCAGCATGGTCAT+TGG - Chr7:75786410-75786429 MsG0780040310.01.T01:intron 45.0%
ATGCTGCATGTAACCATCAC+TGG + Chr7:75786143-75786162 None:intergenic 45.0%
CACTCATTGCCTTCACAAGA+TGG + Chr7:75787003-75787022 None:intergenic 45.0%
CAGTAGTGTGCAGTTTGTCT+TGG - Chr7:75788202-75788221 MsG0780040310.01.T01:CDS 45.0%
CATCTTGTGAAGGCAATGAG+TGG - Chr7:75787001-75787020 MsG0780040310.01.T01:intron 45.0%
GATAGGAGAACAGCTACACT+TGG - Chr7:75786277-75786296 MsG0780040310.01.T01:three_prime_UTR 45.0%
GCTAACCATGGAAGTCAGTT+TGG - Chr7:75787327-75787346 MsG0780040310.01.T01:intron 45.0%
GGTTAAACCTAGCTGGACTA+TGG - Chr7:75788150-75788169 MsG0780040310.01.T01:intron 45.0%
GTAGGACAGGATTGAACAGA+AGG + Chr7:75787671-75787690 None:intergenic 45.0%
GTGTATCCTGCATCCAAAAC+AGG + Chr7:75786553-75786572 None:intergenic 45.0%
TAATGAGGACTTCAACTGGC+CGG - Chr7:75787037-75787056 MsG0780040310.01.T01:intron 45.0%
TCTGTCCTCCATGACTTCAA+AGG - Chr7:75787963-75787982 MsG0780040310.01.T01:intron 45.0%
TGCAGGATACACTGAAGCAA+TGG - Chr7:75786561-75786580 MsG0780040310.01.T01:intron 45.0%
TGCTGGGTAAACTGAAAGTC+TGG + Chr7:75788820-75788839 None:intergenic 45.0%
TGGTTGAGAAAACTGTGGAG+AGG - Chr7:75786665-75786684 MsG0780040310.01.T01:intron 45.0%
TTACATGCAGCATGGTCAAC+TGG - Chr7:75786150-75786169 MsG0780040310.01.T01:three_prime_UTR 45.0%
TTCTGCGAAGCTGATGCTTA+GGG + Chr7:75788585-75788604 None:intergenic 45.0%
TTGAGAAAACTGTGGAGAGG+AGG - Chr7:75786668-75786687 MsG0780040310.01.T01:intron 45.0%
TTTCTCAACCACAACACCAG+AGG + Chr7:75786656-75786675 None:intergenic 45.0%
! ACTGACTTCCATGGTTAGCA+TGG + Chr7:75787326-75787345 None:intergenic 45.0%
! GAGCGCTTGGAAATTTTGCT+AGG + Chr7:75788649-75788668 None:intergenic 45.0%
! TACACTTGGTGAGATGACTC+TGG - Chr7:75786291-75786310 MsG0780040310.01.T01:three_prime_UTR 45.0%
! TGTGGTTCAACAGCCTGTTT+TGG - Chr7:75786537-75786556 MsG0780040310.01.T01:intron 45.0%
!! ACAGAAGAAGAGTGCTACTC+AGG - Chr7:75786255-75786274 MsG0780040310.01.T01:three_prime_UTR 45.0%
!! AGAAGAGTGCTACTCAGGAT+AGG - Chr7:75786260-75786279 MsG0780040310.01.T01:three_prime_UTR 45.0%
!! TTGGATTCTGGAACCAGTGA+TGG - Chr7:75786127-75786146 MsG0780040310.01.T01:three_prime_UTR 45.0%
ACTGCATCCAATGACCATGC+TGG + Chr7:75786420-75786439 None:intergenic 50.0%
ACTGGAACTTTGGCTAGGGA+AGG - Chr7:75785974-75785993 MsG0780040310.01.T01:three_prime_UTR 50.0%
AGACAACAGGACCCCCAAAA+TGG + Chr7:75788895-75788914 None:intergenic 50.0%
AGGTAGTCCATAGTCCAGCT+AGG + Chr7:75788160-75788179 None:intergenic 50.0%
ATTCGCACCACACAGACAAC+AGG + Chr7:75788908-75788927 None:intergenic 50.0%
CTGCATCCAATGACCATGCT+GGG + Chr7:75786419-75786438 None:intergenic 50.0%
GTTCTGCGAAGCTGATGCTT+AGG + Chr7:75788586-75788605 None:intergenic 50.0%
GTTGTGGTTGCTGCACTGAA+GGG + Chr7:75786450-75786469 None:intergenic 50.0%
TGAAGCTGCTGCAAGGTTCT+GGG - Chr7:75786104-75786123 MsG0780040310.01.T01:three_prime_UTR 50.0%
TGTTGTGGTTGCTGCACTGA+AGG + Chr7:75786451-75786470 None:intergenic 50.0%
! ACTTGGTGAGATGACTCTGG+AGG - Chr7:75786294-75786313 MsG0780040310.01.T01:three_prime_UTR 50.0%
! AGCATGGTCAACTGGCTTCT+GGG - Chr7:75786158-75786177 MsG0780040310.01.T01:three_prime_UTR 50.0%
! TAAAGAACTGCTGGAGCGCT+TGG + Chr7:75788662-75788681 None:intergenic 50.0%
! TGTGTGTGGTGTCAACGAAC+AGG - Chr7:75786824-75786843 MsG0780040310.01.T01:intron 50.0%
!! CAACAGCCTGTTTTGGATGC+AGG - Chr7:75786544-75786563 MsG0780040310.01.T01:intron 50.0%
!! CAAGGTTCTGGGTTGGATTC+TGG - Chr7:75786115-75786134 MsG0780040310.01.T01:three_prime_UTR 50.0%
ACAGGCTTACACGCAAGAGC+TGG - Chr7:75786842-75786861 MsG0780040310.01.T01:intron 55.0%
AGCTGATGCTTAGGGTCTGG+TGG + Chr7:75788577-75788596 None:intergenic 55.0%
CGAAGCTGATGCTTAGGGTC+TGG + Chr7:75788580-75788599 None:intergenic 55.0%
CTGAAGCTGCTGCAAGGTTC+TGG - Chr7:75786103-75786122 MsG0780040310.01.T01:three_prime_UTR 55.0%
GAACCTTGCAGCAGCTTCAG+AGG + Chr7:75786103-75786122 None:intergenic 55.0%
GGTAGGAAAAGGGTTGCCTC+TGG - Chr7:75786637-75786656 MsG0780040310.01.T01:intron 55.0%
GTTGCTGCACTGAAGGGACT+TGG + Chr7:75786444-75786463 None:intergenic 55.0%
TGATGCTTAGGGTCTGGTGG+TGG + Chr7:75788574-75788593 None:intergenic 55.0%
! AAGGGTTGCCTCTGGTGTTG+TGG - Chr7:75786645-75786664 MsG0780040310.01.T01:intron 55.0%
! CAGCATGGTCAACTGGCTTC+TGG - Chr7:75786157-75786176 MsG0780040310.01.T01:three_prime_UTR 55.0%
CTGTGGAGAGGAGGCAGAAG+AGG - Chr7:75786677-75786696 MsG0780040310.01.T01:intron 60.0%
TGGGGGTCCTGTTGTCTGTG+TGG - Chr7:75788898-75788917 MsG0780040310.01.T01:intron 60.0%
!! GCTGCTGCAAGGTTCTGGGT+TGG - Chr7:75786108-75786127 MsG0780040310.01.T01:three_prime_UTR 60.0%
!! GGACCTCTGAAGCTGCTGCA+AGG - Chr7:75786097-75786116 MsG0780040310.01.T01:three_prime_UTR 60.0%
!! GGGTCTGGTGGTGGCATACT+TGG + Chr7:75788565-75788584 None:intergenic 60.0%
!! TCGGTCGCGGGCTAGAAAAC+AGG - Chr7:75786726-75786745 MsG0780040310.01.T01:intron 60.0%
GGAATCTGCAGCTCGGTCGC+GGG - Chr7:75786714-75786733 MsG0780040310.01.T01:intron 65.0%
GGGAATCTGCAGCTCGGTCG+CGG - Chr7:75786713-75786732 MsG0780040310.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 75785938 75789007 75785938 ID=MsG0780040310.01;Name=MsG0780040310.01
Chr7 mRNA 75785938 75789007 75785938 ID=MsG0780040310.01.T01;Parent=MsG0780040310.01;Name=MsG0780040310.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.66|0.5|1|0.66|0.5|4|383|292
Chr7 exon 75785938 75786401 75785938 ID=MsG0780040310.01.T01:exon:14497;Parent=MsG0780040310.01.T01
Chr7 exon 75788028 75788099 75788028 ID=MsG0780040310.01.T01:exon:14496;Parent=MsG0780040310.01.T01
Chr7 exon 75788198 75788836 75788198 ID=MsG0780040310.01.T01:exon:14495;Parent=MsG0780040310.01.T01
Chr7 exon 75788921 75789007 75788921 ID=MsG0780040310.01.T01:exon:14494;Parent=MsG0780040310.01.T01
Chr7 CDS 75788921 75789007 75788921 ID=MsG0780040310.01.T01:cds;Parent=MsG0780040310.01.T01
Chr7 CDS 75788198 75788836 75788198 ID=MsG0780040310.01.T01:cds;Parent=MsG0780040310.01.T01
Chr7 CDS 75788028 75788099 75788028 ID=MsG0780040310.01.T01:cds;Parent=MsG0780040310.01.T01
Chr7 CDS 75786321 75786401 75786321 ID=MsG0780040310.01.T01:cds;Parent=MsG0780040310.01.T01
Chr7 three_prime_UTR 75785938 75786320 75785938 ID=MsG0780040310.01.T01:three_prime_utr;Parent=MsG0780040310.01.T01
Gene Sequence

>MsG0780040310.01.T01

ATGGGATCTCATGGAGGAGCAATCCAAGAACAAAAGACTGGAACTTTGGCTAGGGAAGGATCTTTGTACAATCTCACATTTGATGAGCTGCTGCAAGGTTCTGGGTTGGATTCTGGAACCAGTGATGGTTACATGCAGCATGGTCAACTGGCTTCTGGGTCATCTATGAATCCATTGACACTTTCTGGTGATCTTAGTAAGAAAACTATTGATGAGGTTTGGAGAGATATGCAACAGAAGAAGAGTGCTACTCAGGATAGGAGAACAGCTACACTTGGTGAGATGACTCTGGAGGATTTCTTGATGAAAGCTGGTGTGGCCACTGAATCATTTCCTAGTGAGGATAATGCTATGTCAGGAAGGGTTGATTCTCAACAGCAGCAACAAAATACATCCCAGCATGGTCATTGGATGCAGTACCAAGTCCCTTCAGTGCAGCAACCACAACAACAACATCAGCATCAAAATCATCAGAATAATATGATGACTGGTTTTGCAGGTTATATGACTGGTCATGTGGTTCAACAGCCTGTTTTGGATGCAGGATACACTGAAGCAATGGTGAGTTTGTCACCGTCTTCTTTAATGGCTACTTCATCAGATACACAAACTCAAGGTAGGAAAAGGGTTGCCTCTGGTGTTGTGGTTGAGAAAACTGTGGAGAGGAGGCAGAAGAGGATGATTAAAAATAGGGAATCTGCAGCTCGGTCGCGGGCTAGAAAACAGGCTTACACGCAAGAGCTGGAGATCAAAGTGTCACATTTAGAAGAAGAGAATGAAAGGCTTAAAAGATTACATGAGATAGAGAGAGTATTGCCAAGTATGCCACCACCAGACCCTAAGCATCAGCTTCGCAGAACTAGCTCAGCTCCCCTTTGA
Protein sequence

>MsG0780040310.01.T01

MGSHGGAIQEQKTGTLAREGSLYNLTFDELLQGSGLDSGTSDGYMQHGQLASGSSMNPLTLSGDLSKKTIDEVWRDMQQKKSATQDRRTATLGEMTLEDFLMKAGVATESFPSEDNAMSGRVDSQQQQQNTSQHGHWMQYQVPSVQQPQQQHQHQNHQNNMMTGFAGYMTGHVVQQPVLDAGYTEAMVSLSPSSLMATSSDTQTQGRKRVASGVVVEKTVERRQKRMIKNRESAARSRARKQAYTQELEIKVSHLEEENERLKRLHEIERVLPSMPPPDPKHQLRRTSSAPL*