Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040642.01.T01 | XP_013449738.1 | 82.373 | 295 | 10 | 1 | 1 | 253 | 86 | 380 | 3.52E-164 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040642.01.T01 | Q93ZQ3 | 54.153 | 301 | 81 | 6 | 1 | 250 | 86 | 380 | 2.33E-103 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040642.01.T01 | A0A072U326 | 82.373 | 295 | 10 | 1 | 1 | 253 | 86 | 380 | 1.68e-164 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048258.01 | MsG0780040642.01 | 0.833293 | 5.794662e-56 | 6.644398e-53 |
| MsG0180003857.01 | MsG0780040642.01 | 0.800003 | 1.767360e-48 | 8.138805e-46 |
| MsG0180004120.01 | MsG0780040642.01 | 0.804772 | 1.840295e-49 | 9.570933e-47 |
| MsG0780040642.01 | MsG0880043684.01 | 0.808540 | 2.945329e-50 | 1.688579e-47 |
| MsG0780040642.01 | MsG0880045612.01 | 0.819756 | 9.825049e-53 | 7.628299e-50 |
| MsG0780040642.01 | MsG0880045647.01 | 0.809948 | 1.469822e-50 | 8.747102e-48 |
| MsG0780040642.01 | MsG0880047649.01 | 0.825307 | 5.034265e-54 | 4.571598e-51 |
| MsG0380012118.01 | MsG0780040642.01 | 0.800830 | 1.198787e-48 | 5.637709e-46 |
| MsG0380013041.01 | MsG0780040642.01 | 0.806195 | 9.256334e-50 | 4.993133e-47 |
| MsG0480023706.01 | MsG0780040642.01 | 0.801215 | 1.000209e-48 | 4.749905e-46 |
| MsG0380015394.01 | MsG0780040642.01 | 0.802577 | 5.252628e-49 | 2.582045e-46 |
| MsG0580028923.01 | MsG0780040642.01 | 0.802197 | 6.288270e-49 | 3.061336e-46 |
| MsG0780038393.01 | MsG0780040642.01 | 0.807659 | 4.538073e-50 | 2.542104e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040642.01.T01 | MTR_7g094940 | 82.373 | 295 | 10 | 1 | 1 | 253 | 86 | 380 | 4.27e-168 | 469 |
| MsG0780040642.01.T01 | MTR_1g072190 | 58.621 | 290 | 70 | 5 | 1 | 246 | 86 | 369 | 1.18e-103 | 306 |
| MsG0780040642.01.T01 | MTR_1g095165 | 30.530 | 321 | 139 | 9 | 10 | 252 | 140 | 454 | 6.15e-36 | 133 |
| MsG0780040642.01.T01 | MTR_0368s0010 | 31.752 | 274 | 115 | 7 | 45 | 252 | 23 | 290 | 2.54e-33 | 122 |
| MsG0780040642.01.T01 | MTR_2g029510 | 33.333 | 279 | 116 | 11 | 9 | 233 | 134 | 396 | 7.12e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780040642.01.T01 | AT3G63200 | 54.153 | 301 | 81 | 6 | 1 | 250 | 86 | 380 | 2.37e-104 | 308 |
| MsG0780040642.01.T01 | AT2G39220 | 29.245 | 318 | 154 | 7 | 1 | 252 | 165 | 477 | 7.11e-35 | 130 |
| MsG0780040642.01.T01 | AT3G54950 | 31.058 | 293 | 127 | 8 | 10 | 233 | 163 | 449 | 3.38e-30 | 117 |
| MsG0780040642.01.T01 | AT4G29800 | 30.968 | 310 | 136 | 9 | 1 | 233 | 178 | 486 | 8.22e-29 | 114 |
| MsG0780040642.01.T01 | AT4G29800 | 30.225 | 311 | 138 | 9 | 1 | 233 | 178 | 487 | 3.04e-27 | 109 |
Find 53 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTTTCAACTTCGAGCTT+TGG | 0.337029 | 7:-80513032 | MsG0780040642.01.T01:CDS |
| CGCCGTTAGTCTCGTGCTAA+TGG | 0.350594 | 7:-80512175 | None:intergenic |
| TGTTGGGAAATGCTTTCAAT+TGG | 0.372905 | 7:-80512700 | MsG0780040642.01.T01:CDS |
| TTTGTGCAGGCATTTGGTTT+GGG | 0.380361 | 7:-80512371 | MsG0780040642.01.T01:intron |
| GGCATTTGGTTTGGGAGAAA+AGG | 0.387921 | 7:-80512363 | MsG0780040642.01.T01:CDS |
| TACTGACTATGCGAGGATTC+AGG | 0.388689 | 7:-80512672 | MsG0780040642.01.T01:intron |
| GTTTGGGAGAAAAGGGAAGT+TGG | 0.393884 | 7:-80512355 | MsG0780040642.01.T01:CDS |
| CAAAGCTCGAAGTTGAAACT+TGG | 0.395282 | 7:+80513033 | None:intergenic |
| GTGCAACGTCTTGTTGCTAC+TGG | 0.398631 | 7:-80512233 | MsG0780040642.01.T01:CDS |
| TTTGGGAGAAAAGGGAAGTT+GGG | 0.449030 | 7:-80512354 | MsG0780040642.01.T01:CDS |
| AAAGGGAAGTTGGGAAGAAA+CGG | 0.458731 | 7:-80512345 | MsG0780040642.01.T01:CDS |
| ATCACCACTGATGATGGATT+TGG | 0.463331 | 7:-80513327 | MsG0780040642.01.T01:CDS |
| CGCTGGTGCTCCGTTTCCGA+TGG | 0.464766 | 7:+80512811 | None:intergenic |
| CTGTTAATTTCATTGCTGAC+AGG | 0.470929 | 7:-80513278 | MsG0780040642.01.T01:CDS |
| GGGAAAATCGTTGACATTGA+AGG | 0.471091 | 7:-80513142 | MsG0780040642.01.T01:CDS |
| TACTCTTCGTTGAGAATCTC+CGG | 0.471120 | 7:+80513208 | None:intergenic |
| AGAAACCGTTGATCAGATGT+TGG | 0.478228 | 7:-80512717 | MsG0780040642.01.T01:CDS |
| GTATTGGAGTCGTTACCGTT+TGG | 0.480768 | 7:-80512305 | MsG0780040642.01.T01:CDS |
| CGTTACCGTTTGGTGGGAAA+CGG | 0.481378 | 7:-80512295 | MsG0780040642.01.T01:CDS |
| GAAACCGTTGATCAGATGTT+GGG | 0.486925 | 7:-80512716 | MsG0780040642.01.T01:CDS |
| GCATTTGGTTTGGGAGAAAA+GGG | 0.487381 | 7:-80512362 | MsG0780040642.01.T01:CDS |
| TTGGAGTCGTTACCGTTTGG+TGG | 0.498381 | 7:-80512302 | MsG0780040642.01.T01:CDS |
| GGTGTTGAATGAGAGAGTAT+TGG | 0.507963 | 7:-80512321 | MsG0780040642.01.T01:CDS |
| GCAATGATCACCACTGATGA+TGG | 0.521349 | 7:-80513333 | MsG0780040642.01.T01:CDS |
| TGGAGTCGTTACCGTTTGGT+GGG | 0.535065 | 7:-80512301 | MsG0780040642.01.T01:CDS |
| CACCATTAGCACGAGACTAA+CGG | 0.541087 | 7:+80512173 | None:intergenic |
| TGGAACGGCTTGAAGAGACT+TGG | 0.566533 | 7:+80512982 | None:intergenic |
| TCACGACGCATTCTGTTCGC+TGG | 0.568343 | 7:+80512794 | None:intergenic |
| AGTAACCGTTTCCCACCAAA+CGG | 0.569382 | 7:+80512290 | None:intergenic |
| GGCGTAATCTTGCATGGACT+AGG | 0.570747 | 7:+80512194 | None:intergenic |
| TCGTGAATGTTCAACGTCGA+CGG | 0.577186 | 7:-80512768 | MsG0780040642.01.T01:CDS |
| ACTAACGGCGTAATCTTGCA+TGG | 0.577915 | 7:+80512188 | None:intergenic |
| ATTTCCCAACATCTGATCAA+CGG | 0.595899 | 7:+80512712 | None:intergenic |
| GAATCCTCGCATAGTCAGTA+CGG | 0.600379 | 7:+80512675 | None:intergenic |
| TGAATGTTCAACGTCGACGG+TGG | 0.606449 | 7:-80512765 | MsG0780040642.01.T01:CDS |
| TCGACGGAAGCGAACTGGAA+CGG | 0.607610 | 7:+80512967 | None:intergenic |
| ACTTGGCGACTCCGACGCAT+CGG | 0.614092 | 7:+80513050 | None:intergenic |
| TTTCAAGGAAAAGAAAGCGA+GGG | 0.614411 | 7:-80513162 | MsG0780040642.01.T01:CDS |
| TCGTTGAGAATCTCCGGCGC+CGG | 0.615276 | 7:+80513214 | None:intergenic |
| GCATCTCTAGCAGTATAGAG+AGG | 0.616286 | 7:+80513300 | None:intergenic |
| GAATAGTGTTGAGGATCTGA+TGG | 0.617697 | 7:-80512840 | MsG0780040642.01.T01:intron |
| TTTCTCACGAGCCGATGCGT+CGG | 0.628264 | 7:-80513061 | MsG0780040642.01.T01:CDS |
| TCATAACAAGGAATAAGCAA+AGG | 0.630651 | 7:+80513108 | None:intergenic |
| GGGAAGTTGGGAAGAAACGG+AGG | 0.634045 | 7:-80512342 | MsG0780040642.01.T01:CDS |
| GTGGTTGACATTGCTCTCGA+CGG | 0.634047 | 7:-80512746 | MsG0780040642.01.T01:CDS |
| CTAACAGTAACAGAATTGAG+AGG | 0.636540 | 7:-80512259 | MsG0780040642.01.T01:CDS |
| CCCGTCGGTGAATAGTGTTG+AGG | 0.647118 | 7:-80512849 | MsG0780040642.01.T01:intron |
| GTAATCTTGCATGGACTAGG+TGG | 0.653482 | 7:+80512197 | None:intergenic |
| CGGCTTGAAGAGACTTGGAG+TGG | 0.655997 | 7:+80512987 | None:intergenic |
| TCGGCTCGTGAGAAAACGAA+CGG | 0.678847 | 7:+80513069 | None:intergenic |
| TCTACCAAATCCATCATCAG+TGG | 0.680119 | 7:+80513323 | None:intergenic |
| GGAACCGTACTGACTATGCG+AGG | 0.687220 | 7:-80512679 | MsG0780040642.01.T01:CDS |
| GAAGTCTTGAGATCATAACA+AGG | 0.736456 | 7:+80513096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAATATAATCATATGTGT+CGG | + | Chr7:80512935-80512954 | None:intergenic | 20.0% |
| !!! | CTCAAAGTGATTAATTTTAA+CGG | - | Chr7:80513095-80513114 | MsG0780040642.01.T01:CDS | 20.0% |
| !!! | TTTTATAAAATGAAATCCGT+CGG | - | Chr7:80512262-80512281 | MsG0780040642.01.T01:CDS | 20.0% |
| ! | GATAGAAAGTAGTAAAAAAC+AGG | - | Chr7:80513052-80513071 | MsG0780040642.01.T01:CDS | 25.0% |
| !!! | ATTTTAACGGAGTGAATTAA+CGG | - | Chr7:80513108-80513127 | MsG0780040642.01.T01:CDS | 25.0% |
| AGAAGCAAAAGATACAAACA+CGG | + | Chr7:80513001-80513020 | None:intergenic | 30.0% | |
| TCATAACAAGGAATAAGCAA+AGG | + | Chr7:80512403-80512422 | None:intergenic | 30.0% | |
| TGGAGAAAATTCACAACTAT+TGG | + | Chr7:80512869-80512888 | None:intergenic | 30.0% | |
| ACGTCTTTCATCAGAAGTTA+TGG | + | Chr7:80512889-80512908 | None:intergenic | 35.0% | |
| ATTTCCCAACATCTGATCAA+CGG | + | Chr7:80512799-80512818 | None:intergenic | 35.0% | |
| CTAACAGTAACAGAATTGAG+AGG | - | Chr7:80513249-80513268 | MsG0780040642.01.T01:CDS | 35.0% | |
| CTGTTAATTTCATTGCTGAC+AGG | - | Chr7:80512230-80512249 | MsG0780040642.01.T01:CDS | 35.0% | |
| GAAGTCTTGAGATCATAACA+AGG | + | Chr7:80512415-80512434 | None:intergenic | 35.0% | |
| TGTTGGGAAATGCTTTCAAT+TGG | - | Chr7:80512808-80512827 | MsG0780040642.01.T01:CDS | 35.0% | |
| TTTCAAGGAAAAGAAAGCGA+GGG | - | Chr7:80512346-80512365 | MsG0780040642.01.T01:CDS | 35.0% | |
| TTTCTGTCTAATGCACTGTT+TGG | - | Chr7:80513026-80513045 | MsG0780040642.01.T01:CDS | 35.0% | |
| ! | TTGTTGAAGCGAGTTTTTCA+AGG | - | Chr7:80512331-80512350 | MsG0780040642.01.T01:CDS | 35.0% |
| !! | TGTATTTTTGTGCAGGCATT+TGG | - | Chr7:80513131-80513150 | MsG0780040642.01.T01:CDS | 35.0% |
| !! | TTAACGGTGTATTTTTGTGC+AGG | - | Chr7:80513124-80513143 | MsG0780040642.01.T01:CDS | 35.0% |
| !! | TTTTCAAGGAAAAGAAAGCG+AGG | - | Chr7:80512345-80512364 | MsG0780040642.01.T01:CDS | 35.0% |
| AAAGGGAAGTTGGGAAGAAA+CGG | - | Chr7:80513163-80513182 | MsG0780040642.01.T01:CDS | 40.0% | |
| AGAAACCGTTGATCAGATGT+TGG | - | Chr7:80512791-80512810 | MsG0780040642.01.T01:CDS | 40.0% | |
| ATAACAACGTGATTTCCCGT+CGG | - | Chr7:80512644-80512663 | MsG0780040642.01.T01:intron | 40.0% | |
| CAAAGCTCGAAGTTGAAACT+TGG | + | Chr7:80512478-80512497 | None:intergenic | 40.0% | |
| CAAGTTTCAACTTCGAGCTT+TGG | - | Chr7:80512476-80512495 | MsG0780040642.01.T01:intron | 40.0% | |
| GAAACCGTTGATCAGATGTT+GGG | - | Chr7:80512792-80512811 | MsG0780040642.01.T01:CDS | 40.0% | |
| GGGAAAATCGTTGACATTGA+AGG | - | Chr7:80512366-80512385 | MsG0780040642.01.T01:intron | 40.0% | |
| TACTCTTCGTTGAGAATCTC+CGG | + | Chr7:80512303-80512322 | None:intergenic | 40.0% | |
| TCTACCAAATCCATCATCAG+TGG | + | Chr7:80512188-80512207 | None:intergenic | 40.0% | |
| TTTGGGAGAAAAGGGAAGTT+GGG | - | Chr7:80513154-80513173 | MsG0780040642.01.T01:CDS | 40.0% | |
| ! | GAATAGTGTTGAGGATCTGA+TGG | - | Chr7:80512668-80512687 | MsG0780040642.01.T01:intron | 40.0% |
| ! | GGTGTTGAATGAGAGAGTAT+TGG | - | Chr7:80513187-80513206 | MsG0780040642.01.T01:CDS | 40.0% |
| ! | GTGTCGGTACATAATCTTGT+TGG | + | Chr7:80512919-80512938 | None:intergenic | 40.0% |
| ! | TTTGTGCAGGCATTTGGTTT+GGG | - | Chr7:80513137-80513156 | MsG0780040642.01.T01:CDS | 40.0% |
| ! | TTTTGTGCAGGCATTTGGTT+TGG | - | Chr7:80513136-80513155 | MsG0780040642.01.T01:CDS | 40.0% |
| !! | ATCACCACTGATGATGGATT+TGG | - | Chr7:80512181-80512200 | MsG0780040642.01.T01:CDS | 40.0% |
| !! | GCATTTGGTTTGGGAGAAAA+GGG | - | Chr7:80513146-80513165 | MsG0780040642.01.T01:CDS | 40.0% |
| !! | TGGTTTGGTGATGAACAATC+CGG | - | Chr7:80512594-80512613 | MsG0780040642.01.T01:intron | 40.0% |
| !!! | ATGGTTTTGTCCATCGGAAA+CGG | - | Chr7:80512687-80512706 | MsG0780040642.01.T01:CDS | 40.0% |
| !!! | GATCTGATGGTTTTGTCCAT+CGG | - | Chr7:80512681-80512700 | MsG0780040642.01.T01:CDS | 40.0% |
| ACTAACGGCGTAATCTTGCA+TGG | + | Chr7:80513323-80513342 | None:intergenic | 45.0% | |
| AGTAACCGTTTCCCACCAAA+CGG | + | Chr7:80513221-80513240 | None:intergenic | 45.0% | |
| CTTCTGATGAAAGACGTGTC+TGG | - | Chr7:80512892-80512911 | MsG0780040642.01.T01:intron | 45.0% | |
| GAATCCTCGCATAGTCAGTA+CGG | + | Chr7:80512836-80512855 | None:intergenic | 45.0% | |
| GCATCTCTAGCAGTATAGAG+AGG | + | Chr7:80512211-80512230 | None:intergenic | 45.0% | |
| GTATTGGAGTCGTTACCGTT+TGG | - | Chr7:80513203-80513222 | MsG0780040642.01.T01:CDS | 45.0% | |
| GTTTGGGAGAAAAGGGAAGT+TGG | - | Chr7:80513153-80513172 | MsG0780040642.01.T01:CDS | 45.0% | |
| TCCTCAACACTATTCACCGA+CGG | + | Chr7:80512663-80512682 | None:intergenic | 45.0% | |
| TCGTGAATGTTCAACGTCGA+CGG | - | Chr7:80512740-80512759 | MsG0780040642.01.T01:CDS | 45.0% | |
| ! | TACTGACTATGCGAGGATTC+AGG | - | Chr7:80512836-80512855 | MsG0780040642.01.T01:CDS | 45.0% |
| !! | GGCATTTGGTTTGGGAGAAA+AGG | - | Chr7:80513145-80513164 | MsG0780040642.01.T01:CDS | 45.0% |
| !! | GTAATCTTGCATGGACTAGG+TGG | + | Chr7:80513314-80513333 | None:intergenic | 45.0% |
| AAAAACCTCATGCTCAGCCG+TGG | - | Chr7:80512567-80512586 | MsG0780040642.01.T01:intron | 50.0% | |
| CCTCAACACTATTCACCGAC+GGG | + | Chr7:80512662-80512681 | None:intergenic | 50.0% | |
| GGCGTAATCTTGCATGGACT+AGG | + | Chr7:80513317-80513336 | None:intergenic | 50.0% | |
| GTGGTTGACATTGCTCTCGA+CGG | - | Chr7:80512762-80512781 | MsG0780040642.01.T01:CDS | 50.0% | |
| TGAATGTTCAACGTCGACGG+TGG | - | Chr7:80512743-80512762 | MsG0780040642.01.T01:CDS | 50.0% | |
| TGGAACGGCTTGAAGAGACT+TGG | + | Chr7:80512529-80512548 | None:intergenic | 50.0% | |
| TGGAGTCGTTACCGTTTGGT+GGG | - | Chr7:80513207-80513226 | MsG0780040642.01.T01:CDS | 50.0% | |
| TTGGAGTCGTTACCGTTTGG+TGG | - | Chr7:80513206-80513225 | MsG0780040642.01.T01:CDS | 50.0% | |
| ! | CGTTACCGTTTGGTGGGAAA+CGG | - | Chr7:80513213-80513232 | MsG0780040642.01.T01:CDS | 50.0% |
| ! | GCATGAGGTTTTTCCGTCGA+CGG | + | Chr7:80512560-80512579 | None:intergenic | 50.0% |
| ! | GTGCAACGTCTTGTTGCTAC+TGG | - | Chr7:80513275-80513294 | MsG0780040642.01.T01:CDS | 50.0% |
| ! | TCGGCTCGTGAGAAAACGAA+CGG | + | Chr7:80512442-80512461 | None:intergenic | 50.0% |
| !! | AATCCGTCGGTGTTTTTCGC+CGG | - | Chr7:80512275-80512294 | MsG0780040642.01.T01:CDS | 50.0% |
| CATCACCAAACCACCGTCCA+CGG | + | Chr7:80512587-80512606 | None:intergenic | 55.0% | |
| CCCGTCGGTGAATAGTGTTG+AGG | - | Chr7:80512659-80512678 | MsG0780040642.01.T01:intron | 55.0% | |
| CGGCTTGAAGAGACTTGGAG+TGG | + | Chr7:80512524-80512543 | None:intergenic | 55.0% | |
| GATGAACAATCCGGCAGCAG+CGG | - | Chr7:80512603-80512622 | MsG0780040642.01.T01:intron | 55.0% | |
| GGGAAGTTGGGAAGAAACGG+AGG | - | Chr7:80513166-80513185 | MsG0780040642.01.T01:CDS | 55.0% | |
| TCACGACGCATTCTGTTCGC+TGG | + | Chr7:80512717-80512736 | None:intergenic | 55.0% | |
| TCGACGGAAGCGAACTGGAA+CGG | + | Chr7:80512544-80512563 | None:intergenic | 55.0% | |
| TTCCAGTTCGCTTCCGTCGA+CGG | - | Chr7:80512544-80512563 | MsG0780040642.01.T01:intron | 55.0% | |
| TTTCTCACGAGCCGATGCGT+CGG | - | Chr7:80512447-80512466 | MsG0780040642.01.T01:intron | 55.0% | |
| !! | GGAACCGTACTGACTATGCG+AGG | - | Chr7:80512829-80512848 | MsG0780040642.01.T01:CDS | 55.0% |
| ACCTCATGCTCAGCCGTGGA+CGG | - | Chr7:80512571-80512590 | MsG0780040642.01.T01:intron | 60.0% | |
| ACTTGGCGACTCCGACGCAT+CGG | + | Chr7:80512461-80512480 | None:intergenic | 60.0% | |
| TCGTTGAGAATCTCCGGCGC+CGG | + | Chr7:80512297-80512316 | None:intergenic | 60.0% | |
| TTCCGTCGACGGAAGCGAAC+TGG | + | Chr7:80512549-80512568 | None:intergenic | 60.0% | |
| ACCGTCCACGGCTGAGCATG+AGG | + | Chr7:80512575-80512594 | None:intergenic | 65.0% | |
| CGCTGGTGCTCCGTTTCCGA+TGG | + | Chr7:80512700-80512719 | None:intergenic | 65.0% | |
| CTCAGCCGTGGACGGTGGTT+TGG | - | Chr7:80512579-80512598 | MsG0780040642.01.T01:intron | 65.0% | |
| TCATGCTCAGCCGTGGACGG+TGG | - | Chr7:80512574-80512593 | MsG0780040642.01.T01:intron | 65.0% | |
| TGCGTAACAGCCGCTGCTGC+CGG | + | Chr7:80512616-80512635 | None:intergenic | 65.0% | |
| ! | GCGCCGGCGAAAAACACCGA+CGG | + | Chr7:80512281-80512300 | None:intergenic | 65.0% |
| !! | TCGGTGTTTTTCGCCGGCGC+CGG | - | Chr7:80512281-80512300 | MsG0780040642.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 80512178 | 80513352 | 80512178 | ID=MsG0780040642.01;Name=MsG0780040642.01 |
| Chr7 | mRNA | 80512178 | 80513352 | 80512178 | ID=MsG0780040642.01.T01;Parent=MsG0780040642.01;Name=MsG0780040642.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|253 |
| Chr7 | exon | 80512982 | 80513352 | 80512982 | ID=MsG0780040642.01.T01:exon:18604;Parent=MsG0780040642.01.T01 |
| Chr7 | exon | 80512673 | 80512856 | 80512673 | ID=MsG0780040642.01.T01:exon:18603;Parent=MsG0780040642.01.T01 |
| Chr7 | exon | 80512178 | 80512384 | 80512178 | ID=MsG0780040642.01.T01:exon:18602;Parent=MsG0780040642.01.T01 |
| Chr7 | CDS | 80512982 | 80513352 | 80512982 | ID=MsG0780040642.01.T01:cds;Parent=MsG0780040642.01.T01 |
| Chr7 | CDS | 80512673 | 80512856 | 80512673 | ID=MsG0780040642.01.T01:cds;Parent=MsG0780040642.01.T01 |
| Chr7 | CDS | 80512178 | 80512384 | 80512178 | ID=MsG0780040642.01.T01:cds;Parent=MsG0780040642.01.T01 |
| Gene Sequence |
| Protein sequence |
