AlfalfaGEDB | MsG0880047649.01

M. sativa cultivar ZhongmuNo.1 / MsG0880047649.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047649.01.T01	XP_003610438.1	91.057	861	73	2	1	857	1	861	0	1540

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047649.01.T01	G7JJ78	91.057	861	73	2	1	857	1	861	0.0	1540

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047815.01	MsG0880047649.01	0.907733	3.680824e-81	6.614833e-77
MsG0080048258.01	MsG0880047649.01	0.899337	2.190088e-77	2.696761e-73
MsG0080048311.01	MsG0880047649.01	0.819666	1.030417e-52	7.979799e-50
MsG0080048775.01	MsG0880047649.01	0.891113	5.343628e-74	4.622754e-70
MsG0080048781.01	MsG0880047649.01	0.907534	4.567001e-81	8.134278e-77
MsG0080048797.01	MsG0880047649.01	0.829951	3.860683e-55	4.010719e-52
MsG0180000111.01	MsG0880047649.01	0.862624	4.441324e-64	1.309066e-60
MsG0180001293.01	MsG0880047649.01	0.923629	2.064256e-89	8.351713e-85
MsG0180001588.01	MsG0880047649.01	0.821672	3.564980e-53	2.919473e-50
MsG0180001719.01	MsG0880047649.01	0.859217	4.820037e-63	1.263332e-59

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047649.01.T01	MTR_4g132160	91.057	861	73	2	1	857	1	861	0.0	1540

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880047649.01.T01	AT1G16630	29.073	939	424	43	20	850	34	838	9.53e-46	177
MsG0880047649.01.T01	AT2G16270	32.591	494	202	22	8	470	12	405	2.23e-39	157
MsG0880047649.01.T01	AT2G16270	70.000	50	11	2	805	850	701	750	7.32e-11	66.6

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Find 187 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCAGTTTATGAAAC+CGG	0.441090	8:+89188239	MsG0880047649.01.T01:CDS
AAAAGCGCCGGAATTACCAC+AGG	0.610343	8:+89190410	MsG0880047649.01.T01:CDS
AAAATGGATGAATTAGGAAA+TGG	0.436029	8:-89187851	None:intergenic
AAACAAATTACCTATCCCCT+AGG	0.602260	8:+89188820	MsG0880047649.01.T01:CDS
AAAGATACCTGAAGGACTAT+TGG	0.453579	8:-89188072	None:intergenic
AAAGCCGCTAATGGAATTAG+AGG	0.426519	8:+89188866	MsG0880047649.01.T01:CDS
AAATATGCCAAGTTCAAATT+CGG	0.415242	8:+89189877	MsG0880047649.01.T01:CDS
AAATCTTCAGACTCACAACT+CGG	0.613094	8:-89188498	None:intergenic
AACAACTTCAGCATGATATG+GGG	0.647874	8:+89189570	MsG0880047649.01.T01:CDS
AACCGCTTATACAGGAGAAG+TGG	0.600502	8:-89190675	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTGAGAAATGAAGAGA+AGG	-	Chr8:89187760-89187779	None:intergenic	30.0%
ATACATTGTTAGACTTCCAT+AGG	-	Chr8:89190479-89190498	None:intergenic	30.0%
ATTTCAATCACAAATTCTCC+AGG	+	Chr8:89189152-89189171	MsG0880047649.01.T01:CDS	30.0%
GAAATTCAAAATGAAGTCTG+TGG	+	Chr8:89189899-89189918	MsG0880047649.01.T01:CDS	30.0%
GTTTCTGAATTTCTTGGATT+AGG	-	Chr8:89187957-89187976	None:intergenic	30.0%
TAGAAATACATTCACATTGC+AGG	-	Chr8:89190747-89190766	None:intergenic	30.0%
TCTGATTCTATATAAGTAGC+AGG	-	Chr8:89189659-89189678	None:intergenic	30.0%
TGAAAGAAAAAGATACCTGA+AGG	-	Chr8:89188083-89188102	None:intergenic	30.0%
TGAACATTTAGATGCAAAGT+TGG	+	Chr8:89189694-89189713	MsG0880047649.01.T01:CDS	30.0%
TGAATTTCCGAATTTGAACT+TGG	-	Chr8:89189887-89189906	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	89187756	89190865	89187756	ID=MsG0880047649.01;Name=MsG0880047649.01
Chr8	mRNA	89187756	89190865	89187756	ID=MsG0880047649.01.T01;Parent=MsG0880047649.01;Name=MsG0880047649.01.T01;_AED=0.19;_eAED=0.19;_QI=150\|1\|1\|1\|1\|1\|3\|174\|857
Chr8	exon	89187756	89188086	89187756	ID=MsG0880047649.01.T01:exon:18733;Parent=MsG0880047649.01.T01
Chr8	exon	89188199	89190513	89188199	ID=MsG0880047649.01.T01:exon:18734;Parent=MsG0880047649.01.T01
Chr8	exon	89190614	89190865	89190614	ID=MsG0880047649.01.T01:exon:18735;Parent=MsG0880047649.01.T01
Chr8	five_prime_UTR	89187756	89187905	89187756	ID=MsG0880047649.01.T01:five_prime_utr;Parent=MsG0880047649.01.T01
Chr8	CDS	89187906	89188086	89187906	ID=MsG0880047649.01.T01:cds;Parent=MsG0880047649.01.T01
Chr8	CDS	89188199	89190513	89188199	ID=MsG0880047649.01.T01:cds;Parent=MsG0880047649.01.T01
Chr8	CDS	89190614	89190691	89190614	ID=MsG0880047649.01.T01:cds;Parent=MsG0880047649.01.T01
Chr8	three_prime_UTR	89190692	89190865	89190692	ID=MsG0880047649.01.T01:three_prime_utr;Parent=MsG0880047649.01.T01

Gene Sequence

>MsG0880047649.01.T01

ATGCCTCTCAACAACGACAAATCCCCTCCAGTTTCAAATTCATCAAACCCTAATCCAAGAAATTCAGAAACCATTAACCCCATGCGAAGAAGTTTCTCAGGAAATCCATTCTCTAAACCTTCCCTCATTGCCGCTAACCCTAGATCTAGTTTCTCTCACACTCCCGCCAATAGTCCTTCAGATTTTTCAAGAAAAAGCTTTGCTGATGACAAAGAAAACACAAAAGATCAGTTTATGAAACCGGCAAAGGTTAGATCGCCAGCTGCAACATCGAAATCAACGAAGAATTTCATGTCACCGACGATCTCTGCTTCCTTCAAGATGGCTGAGTCACCGAGAAAGAAAATCCTTGCGGAGAGGAACGAGCCTACTCCTTCTTCCGACAACAAAATTCATGTTCGGAAGGTAACTTTTTCTGATCCTTTAGAACAGAAAAGGGTTGATACTGGTTCATTAGATGGGAATAGTAGAGTCCTCTTTCCGAGTTGTGAGTCTGAAGATTTGAGTGATGAAAATTTGTCTGAGTCCAATGTTGTTCCTATGGATGATTTGTCGTATAATGCTATGCGTATGAATGTTCCTATGATTCTAAACAATGATTCAGATTTTTCATTTGAAACTGTGCACACTGAACCCTCATTTCAAAATGTTCCTTTGATTAGAAACAATGATTCAGATTTTGTTAACCTTGACCCTACTTTTAAGCTTAGTCCAGCCGCGGCTACTCCTCCAGTTTCTTACACTGCTAATGCCGTAGACCCTCTTGTTGATGCTGATTCCTCTGTGCCACCTTATGACCCTAAAACAAATTACCTATCCCCTAGGCCACAATTCCTTCATTACAAACCAAAGCCGCTAATGGAATTAGAGGACAGTTTCATTATGTCAGGAAACTTTTCAGATACAGATGTTACCGAGGATACTCAGTCTGATGAATCCCAGAAGGAATCATCGGAGGATGTTTCTTCTGATGAAACTGTGAAGCAGGAAGATGATCAAATTTCTGAACAAAGTCCTGTTAGGACTCTCTTGCCAGAGAAAACAGTTGAAGCAAAGGAGCTGCAAAAACCACGCTTTTCTTTGAGATCGAAGGCTGCTGTTCTAATTTTGCTTCTTTCAATTGCTTTTGTATCAATTTCAATCACAAATTCTCCAGGGTCTCATGCTGTGTTGGAAGACTTTTATGAGGCTTATGAGTCTTCTGAACTTTCGGAGTTTGCAAAGGCTAACTTTGATCAATTCTCCCAGTTTGCAAAAGCGAATTTTGCAGGTTTCGTTCGGAATTCGCATATTTGGTATACTAAGTCGCTGTCTTCCATCTCTGAGTTGATTTCAGATGTTAGAGGAGTGCGTAATTTGTCCCAGTTGCAGTACTTTAACTTGACTGTGCTGCACGACTATAGTGCAGTTAATCAGAGTCCTATCTTTGGTCGCGGTGAAAATAAAATAGGCGACACTCGCCCTCCTGTTCAAGAAACACACGTTGCCTCAGAGATTTCGATGGATGAGTATTTTGGTGATATTTTAGCAGAGCATTATGAAGTATATGAAGAACAACTTCAGCATGATATGGGGATGAACACTGGATTTGAAAATGCATTGGATGCTCAAGAATCTGAGGAAGTGCACAATGGACAACCTGCTACTTATATAGAATCAGAAGAGCAGGCTGAACATGAACATTTAGATGCAAAGTTGGAAGAAGAAATTGATGCTAGCTTTGAAGTTGAAGATGCTTTAGAGTCTGAGGAAGCACTCGCGGGCCAATCTACTACTTTGGTAGAACCAGAGCAGGCTTTGCAACTGGTTGAATCAGTATACTCAGAAGGAGACCAAACACCAAGGGCTGATGATCATGAAAATATGCCAAGTTCAAATTCGGAAATTCAAAATGAAGTCTGTGGTGAAGGTAATGTAGATACAAAGCTGGAACAAGAAAATGATGTTAAATTAATTGGCAAAGAAAGTGATGCTGATCTCAAGCATTCACCAGTTTCAGAAGTTGCTGAGATACACACGGATGACCAAGCAGTGGGAATATCAGCTGACACAGATGCTGCAATTAGAGGGAATGAGCAGCTATTAGAAGCAACTCACATTCCTCAAAACATTGTGCTATACTTGCTGCTTTGTGCAGGTACGGTTTTTATTGCAGGTGCAACTTTTAACTGGTCAAGGAAAGTTAAAAGCAGAAGCAAAAAGTTTACTAGCTCTGTGGAGAAGCCTAAGATTGGATCTGAGGACAAGAAGATTTCCCCAGATAAGCCATCTATGAGGAATGTGCCTGTAGAAATGGACGTGGTTGGAGAATCGTGCCCTTCAGAAATGAGCAGCTTTGAGAAGAGCTCATCTAACAGAGTGAATCATTTGAGTGAAGCTACCAGCGTAGAGAAAAAGCGCCGGAATTACCACAGGAGAGAGTCGTTGGCCTCTTCTGACTACTCCATGGGTTCACCATCCTATGGAAGTCTAACAATGTATGAGAAAATTCCAAAGGGACGCGGCGAAGAGGAGATAGTTACTCCGGTTAGGCGTTCAAGTAGGATTAGGAGCATTGCCACTTCTCCTGTATAA

Protein sequence

>MsG0880047649.01.T01

MPLNNDKSPPVSNSSNPNPRNSETINPMRRSFSGNPFSKPSLIAANPRSSFSHTPANSPSDFSRKSFADDKENTKDQFMKPAKVRSPAATSKSTKNFMSPTISASFKMAESPRKKILAERNEPTPSSDNKIHVRKVTFSDPLEQKRVDTGSLDGNSRVLFPSCESEDLSDENLSESNVVPMDDLSYNAMRMNVPMILNNDSDFSFETVHTEPSFQNVPLIRNNDSDFVNLDPTFKLSPAAATPPVSYTANAVDPLVDADSSVPPYDPKTNYLSPRPQFLHYKPKPLMELEDSFIMSGNFSDTDVTEDTQSDESQKESSEDVSSDETVKQEDDQISEQSPVRTLLPEKTVEAKELQKPRFSLRSKAAVLILLLSIAFVSISITNSPGSHAVLEDFYEAYESSELSEFAKANFDQFSQFAKANFAGFVRNSHIWYTKSLSSISELISDVRGVRNLSQLQYFNLTVLHDYSAVNQSPIFGRGENKIGDTRPPVQETHVASEISMDEYFGDILAEHYEVYEEQLQHDMGMNTGFENALDAQESEEVHNGQPATYIESEEQAEHEHLDAKLEEEIDASFEVEDALESEEALAGQSTTLVEPEQALQLVESVYSEGDQTPRADDHENMPSSNSEIQNEVCGEGNVDTKLEQENDVKLIGKESDADLKHSPVSEVAEIHTDDQAVGISADTDAAIRGNEQLLEATHIPQNIVLYLLLCAGTVFIAGATFNWSRKVKSRSKKFTSSVEKPKIGSEDKKISPDKPSMRNVPVEMDVVGESCPSEMSSFEKSSSNRVNHLSEATSVEKKRRNYHRRESLASSDYSMGSPSYGSLTMYEKIPKGRGEEEIVTPVRRSSRIRSIATSPV*