Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012118.01.T01 | AES68738.2 | 85.222 | 203 | 3 | 1 | 1 | 176 | 46 | 248 | 8.87E-111 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012118.01.T01 | O04496 | 46.262 | 214 | 76 | 4 | 1 | 176 | 67 | 279 | 5.36E-54 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012118.01.T01 | G7J0H7 | 85.222 | 203 | 3 | 1 | 1 | 176 | 46 | 248 | 4.24e-111 | 334 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047815.01 | MsG0380012118.01 | 0.873441 | 1.467200e-67 | 6.368841e-64 |
| MsG0080048258.01 | MsG0380012118.01 | 0.864793 | 9.413549e-65 | 2.992826e-61 |
| MsG0080048775.01 | MsG0380012118.01 | 0.803023 | 4.248032e-49 | 2.112023e-46 |
| MsG0080048781.01 | MsG0380012118.01 | 0.804720 | 1.886215e-49 | 9.797157e-47 |
| MsG0180001293.01 | MsG0380012118.01 | 0.853186 | 2.821436e-61 | 6.045207e-58 |
| MsG0180001588.01 | MsG0380012118.01 | 0.824141 | 9.478532e-54 | 8.325065e-51 |
| MsG0180001719.01 | MsG0380012118.01 | 0.801669 | 8.075508e-49 | 3.879041e-46 |
| MsG0180002218.01 | MsG0380012118.01 | 0.808830 | 2.554439e-50 | 1.475579e-47 |
| MsG0180002397.01 | MsG0380012118.01 | 0.805910 | 1.062364e-49 | 5.689215e-47 |
| MsG0180003427.01 | MsG0380012118.01 | 0.802042 | 6.768624e-49 | 3.282261e-46 |
| MsG0180003857.01 | MsG0380012118.01 | 0.863861 | 1.839152e-64 | 5.658414e-61 |
| MsG0180004120.01 | MsG0380012118.01 | 0.847358 | 1.216498e-59 | 2.156651e-56 |
| MsG0180004185.01 | MsG0380012118.01 | 0.830934 | 2.219598e-55 | 2.373046e-52 |
| MsG0180004299.01 | MsG0380012118.01 | 0.836676 | 8.139893e-57 | 1.033118e-53 |
| MsG0180004375.01 | MsG0380012118.01 | 0.839212 | 1.813741e-57 | 2.487465e-54 |
| MsG0180004538.01 | MsG0380012118.01 | 0.847188 | 1.354415e-59 | 2.388238e-56 |
| MsG0180004583.01 | MsG0380012118.01 | 0.877282 | 7.122725e-69 | 3.561375e-65 |
| MsG0180004652.01 | MsG0380012118.01 | 0.817332 | 3.483410e-52 | 2.529435e-49 |
| MsG0180004828.01 | MsG0380012118.01 | 0.802209 | 6.254717e-49 | 3.045909e-46 |
| MsG0180004835.01 | MsG0380012118.01 | 0.838286 | 3.146965e-57 | 4.195135e-54 |
| MsG0180005553.01 | MsG0380012118.01 | 0.807313 | 5.372137e-50 | 2.982596e-47 |
| MsG0180005655.01 | MsG0380012118.01 | 0.832768 | 7.830303e-56 | 8.838505e-53 |
| MsG0180006133.01 | MsG0380012118.01 | 0.827788 | 1.288901e-54 | 1.256972e-51 |
| MsG0380011846.01 | MsG0380012118.01 | 0.941106 | 7.394698e-101 | 8.473148e-96 |
| MsG0380012118.01 | MsG0380012818.01 | 0.827206 | 1.777658e-54 | 1.704673e-51 |
| MsG0380012118.01 | MsG0380012956.01 | 0.800644 | 1.308323e-48 | 6.123862e-46 |
| MsG0380012118.01 | MsG0380013041.01 | 0.841533 | 4.484701e-58 | 6.609226e-55 |
| MsG0380012118.01 | MsG0380014542.01 | 0.880045 | 7.582162e-70 | 4.209387e-66 |
| MsG0380012118.01 | MsG0380014544.01 | 0.840179 | 1.016173e-57 | 1.435967e-54 |
| MsG0380012118.01 | MsG0380014666.01 | 0.806539 | 7.833421e-50 | 4.262772e-47 |
| MsG0380012118.01 | MsG0380014807.01 | 0.804791 | 1.823063e-49 | 9.486252e-47 |
| MsG0380012118.01 | MsG0380015090.01 | 0.832508 | 9.084043e-56 | 1.017473e-52 |
| MsG0380012118.01 | MsG0380015340.01 | 0.817487 | 3.214942e-52 | 2.344482e-49 |
| MsG0380012118.01 | MsG0380015394.01 | 0.842295 | 2.821481e-58 | 4.259055e-55 |
| MsG0380012118.01 | MsG0380015409.01 | 0.829573 | 4.773997e-55 | 4.905138e-52 |
| MsG0380012118.01 | MsG0380015825.01 | 0.831087 | 2.036049e-55 | 2.186588e-52 |
| MsG0380012118.01 | MsG0380015954.01 | 0.836875 | 7.239359e-57 | 9.244296e-54 |
| MsG0380012118.01 | MsG0380016027.01 | 0.824821 | 6.557414e-54 | 5.873214e-51 |
| MsG0380012118.01 | MsG0380016091.01 | 0.800565 | 1.357564e-48 | 6.341575e-46 |
| MsG0380012118.01 | MsG0380017079.01 | 0.848146 | 7.382711e-60 | 1.341874e-56 |
| MsG0380012118.01 | MsG0380017282.01 | 0.803682 | 3.102847e-49 | 1.569016e-46 |
| MsG0380012118.01 | MsG0380017696.01 | 0.827555 | 1.466262e-54 | 1.420291e-51 |
| MsG0380012118.01 | MsG0380018055.01 | 0.897785 | 1.003273e-76 | 1.151493e-72 |
| MsG0380012118.01 | MsG0480018228.01 | 0.840273 | 9.605356e-58 | 1.361159e-54 |
| MsG0380012118.01 | MsG0480019054.01 | 0.802933 | 4.434784e-49 | 2.199903e-46 |
| MsG0380012118.01 | MsG0480020398.01 | 0.814611 | 1.410851e-51 | 9.510984e-49 |
| MsG0380012118.01 | MsG0480020856.01 | 0.833444 | 5.315650e-56 | 6.122913e-53 |
| MsG0380012118.01 | MsG0480021100.01 | 0.844249 | 8.500339e-59 | 1.364113e-55 |
| MsG0380012118.01 | MsG0480021301.01 | 0.816355 | 5.771904e-52 | 4.080721e-49 |
| MsG0380012118.01 | MsG0480021456.01 | 0.863284 | 2.777947e-64 | 8.377359e-61 |
| MsG0380012118.01 | MsG0480021773.01 | 0.869675 | 2.592312e-66 | 9.810642e-63 |
| MsG0380012118.01 | MsG0480021902.01 | 0.848684 | 5.237822e-60 | 9.689741e-57 |
| MsG0380012118.01 | MsG0480022307.01 | 0.818768 | 1.649762e-52 | 1.246238e-49 |
| MsG0380012118.01 | MsG0480022378.01 | 0.820604 | 6.281730e-53 | 4.993024e-50 |
| MsG0380012118.01 | MsG0480022682.01 | 0.872514 | 2.999856e-67 | 1.259004e-63 |
| MsG0380012118.01 | MsG0480022784.01 | 0.836442 | 9.336291e-57 | 1.176748e-53 |
| MsG0380012118.01 | MsG0480022991.01 | 0.805344 | 1.397121e-49 | 7.373546e-47 |
| MsG0380012118.01 | MsG0480023003.01 | 0.811686 | 6.183387e-51 | 3.852557e-48 |
| MsG0380012118.01 | MsG0480023064.01 | 0.812544 | 4.019754e-51 | 2.563103e-48 |
| MsG0380012118.01 | MsG0480023424.01 | 0.809655 | 1.699833e-50 | 1.003839e-47 |
| MsG0380012118.01 | MsG0480023426.01 | 0.834359 | 3.137330e-56 | 3.714467e-53 |
| MsG0380012118.01 | MsG0480023653.01 | 0.868475 | 6.353124e-66 | 2.301089e-62 |
| MsG0380012118.01 | MsG0480023706.01 | 0.841554 | 4.429079e-58 | 6.531744e-55 |
| MsG0380012118.01 | MsG0480023861.01 | 0.874218 | 8.018019e-68 | 3.579575e-64 |
| MsG0380012118.01 | MsG0480024002.01 | 0.807549 | 4.788228e-50 | 2.674610e-47 |
| MsG0380012118.01 | MsG0480024019.01 | 0.807972 | 3.893250e-50 | 2.198871e-47 |
| MsG0380012118.01 | MsG0580024158.01 | 0.801903 | 7.229892e-49 | 3.493645e-46 |
| MsG0380012118.01 | MsG0580024276.01 | 0.805196 | 1.499879e-49 | 7.886085e-47 |
| MsG0380012118.01 | MsG0580024773.01 | 0.863417 | 2.526371e-64 | 7.652602e-61 |
| MsG0380012118.01 | MsG0580024787.01 | 0.853360 | 2.516682e-61 | 5.423573e-58 |
| MsG0380012118.01 | MsG0580025056.01 | 0.816004 | 6.915939e-52 | 4.842654e-49 |
| MsG0380012118.01 | MsG0580025186.01 | 0.815389 | 9.480004e-52 | 6.527206e-49 |
| MsG0380012118.01 | MsG0580025504.01 | 0.824838 | 6.498806e-54 | 5.823307e-51 |
| MsG0380012118.01 | MsG0580025775.01 | 0.819463 | 1.146433e-52 | 8.828592e-50 |
| MsG0380012118.01 | MsG0580027854.01 | 0.806787 | 6.941537e-50 | 3.801511e-47 |
| MsG0380012118.01 | MsG0580028364.01 | 0.807122 | 5.897920e-50 | 3.258011e-47 |
| MsG0380012118.01 | MsG0580028923.01 | 0.835217 | 1.907969e-56 | 2.317908e-53 |
| MsG0380012118.01 | MsG0580028927.01 | 0.803250 | 3.812665e-49 | 1.906714e-46 |
| MsG0380012118.01 | MsG0580028955.01 | 0.834918 | 2.270191e-56 | 2.733121e-53 |
| MsG0380012118.01 | MsG0580029261.01 | 0.815079 | 1.110802e-51 | 7.583334e-49 |
| MsG0380012118.01 | MsG0580029591.01 | 0.801131 | 1.040512e-48 | 4.931028e-46 |
| MsG0380012118.01 | MsG0680033696.01 | 0.809042 | 2.300440e-50 | 1.336451e-47 |
| MsG0380012118.01 | MsG0680035350.01 | 0.823852 | 1.107876e-53 | 9.652021e-51 |
| MsG0380012118.01 | MsG0680035776.01 | 0.802380 | 5.767934e-49 | 2.821371e-46 |
| MsG0380012118.01 | MsG0780036534.01 | 0.805657 | 1.200658e-49 | 6.388099e-47 |
| MsG0380012118.01 | MsG0780037741.01 | 0.808252 | 3.393752e-50 | 1.931082e-47 |
| MsG0380012118.01 | MsG0780038393.01 | 0.827848 | 1.247434e-54 | 1.218730e-51 |
| MsG0380012118.01 | MsG0780038402.01 | 0.859030 | 5.483945e-63 | 1.427962e-59 |
| MsG0380012118.01 | MsG0780038736.01 | 0.843715 | 1.181255e-58 | 1.864344e-55 |
| MsG0380012118.01 | MsG0780039861.01 | 0.845068 | 5.112433e-59 | 8.419772e-56 |
| MsG0380012118.01 | MsG0780040620.01 | 0.832871 | 7.379956e-56 | 8.356090e-53 |
| MsG0380012118.01 | MsG0780040641.01 | 0.835011 | 2.150144e-56 | 2.595843e-53 |
| MsG0380012118.01 | MsG0780040642.01 | 0.800830 | 1.198787e-48 | 5.637709e-46 |
| MsG0380012118.01 | MsG0780040899.01 | 0.826322 | 2.890312e-54 | 2.701685e-51 |
| MsG0380012118.01 | MsG0780040978.01 | 0.808482 | 3.030705e-50 | 1.734939e-47 |
| MsG0380012118.01 | MsG0780041273.01 | 0.811821 | 5.779798e-51 | 3.614085e-48 |
| MsG0380012118.01 | MsG0780041340.01 | 0.821614 | 3.676332e-53 | 3.005569e-50 |
| MsG0380012118.01 | MsG0780041359.01 | 0.830500 | 2.836013e-55 | 2.993198e-52 |
| MsG0380012118.01 | MsG0880042366.01 | 0.808845 | 2.535195e-50 | 1.465050e-47 |
| MsG0380012118.01 | MsG0880043684.01 | 0.924419 | 7.225428e-90 | 3.048687e-85 |
| MsG0380012118.01 | MsG0880043714.01 | 0.921427 | 3.626361e-88 | 1.297253e-83 |
| MsG0380012118.01 | MsG0880044437.01 | 0.851431 | 8.916274e-61 | 1.804397e-57 |
| MsG0380012118.01 | MsG0880044984.01 | 0.801389 | 9.215840e-49 | 4.395634e-46 |
| MsG0380012118.01 | MsG0880045439.01 | 0.823389 | 1.421900e-53 | 1.222479e-50 |
| MsG0380012118.01 | MsG0880045612.01 | 0.881299 | 2.693199e-70 | 1.569294e-66 |
| MsG0380012118.01 | MsG0880045647.01 | 0.881419 | 2.437446e-70 | 1.426985e-66 |
| MsG0380012118.01 | MsG0880045802.01 | 0.810406 | 1.171008e-50 | 7.052412e-48 |
| MsG0380012118.01 | MsG0880045879.01 | 0.832781 | 7.769223e-56 | 8.773247e-53 |
| MsG0380012118.01 | MsG0880045989.01 | 0.815564 | 8.664316e-52 | 5.994436e-49 |
| MsG0380012118.01 | MsG0880046646.01 | 0.828482 | 8.775123e-55 | 8.733353e-52 |
| MsG0380012118.01 | MsG0880046904.01 | 0.844586 | 6.897728e-59 | 1.118793e-55 |
| MsG0380012118.01 | MsG0880046905.01 | 0.808564 | 2.910836e-50 | 1.669815e-47 |
| MsG0380012118.01 | MsG0880046993.01 | 0.824421 | 8.145340e-54 | 7.210875e-51 |
| MsG0380012118.01 | MsG0880047414.01 | 0.808759 | 2.644729e-50 | 1.524899e-47 |
| MsG0380012118.01 | MsG0880047649.01 | 0.895574 | 8.418054e-76 | 8.785558e-72 |
| MsG0380012118.01 | MsG0880047681.01 | 0.810196 | 1.299816e-50 | 7.785103e-48 |
| MsG0280006563.01 | MsG0380012118.01 | 0.844125 | 9.177019e-59 | 1.467115e-55 |
| MsG0280007408.01 | MsG0380012118.01 | 0.811784 | 5.886575e-51 | 3.677280e-48 |
| MsG0280007695.01 | MsG0380012118.01 | 0.825320 | 4.999428e-54 | 4.541838e-51 |
| MsG0280009866.01 | MsG0380012118.01 | 0.853371 | 2.497144e-61 | 5.383584e-58 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012118.01.T01 | MTR_3g014290 | 85.222 | 203 | 3 | 1 | 1 | 176 | 46 | 248 | 1.07e-114 | 334 |
| MsG0380012118.01.T01 | MTR_1g037630 | 84.729 | 203 | 4 | 1 | 1 | 176 | 58 | 260 | 3.67e-114 | 333 |
| MsG0380012118.01.T01 | MTR_8g039540 | 70.098 | 204 | 33 | 1 | 1 | 176 | 62 | 265 | 1.44e-82 | 253 |
| MsG0380012118.01.T01 | MTR_3g100500 | 50.481 | 208 | 70 | 5 | 1 | 176 | 62 | 268 | 2.23e-43 | 151 |
| MsG0380012118.01.T01 | MTR_1g115210 | 29.651 | 172 | 89 | 4 | 33 | 173 | 144 | 314 | 8.36e-15 | 73.2 |
| MsG0380012118.01.T01 | MTR_3g097150 | 28.319 | 226 | 109 | 9 | 7 | 186 | 71 | 289 | 1.14e-14 | 72.8 |
| MsG0380012118.01.T01 | MTR_3g053710 | 26.066 | 211 | 111 | 7 | 5 | 174 | 89 | 295 | 5.41e-14 | 70.9 |
| MsG0380012118.01.T01 | MTR_4g007740 | 26.540 | 211 | 102 | 7 | 22 | 183 | 120 | 326 | 2.41e-13 | 68.9 |
| MsG0380012118.01.T01 | MTR_5g038360 | 29.808 | 208 | 97 | 9 | 6 | 168 | 59 | 262 | 4.72e-13 | 68.2 |
| MsG0380012118.01.T01 | MTR_2g059460 | 30.734 | 218 | 92 | 11 | 31 | 193 | 49 | 262 | 5.77e-13 | 67.8 |
| MsG0380012118.01.T01 | MTR_2g028190 | 26.316 | 209 | 99 | 7 | 1 | 155 | 55 | 262 | 2.60e-12 | 65.9 |
| MsG0380012118.01.T01 | MTR_0036s0070 | 31.579 | 190 | 86 | 9 | 36 | 184 | 91 | 277 | 1.76e-11 | 63.5 |
| MsG0380012118.01.T01 | MTR_4g045857 | 30.357 | 224 | 105 | 12 | 11 | 184 | 29 | 251 | 3.97e-11 | 62.0 |
| MsG0380012118.01.T01 | MTR_0036s0110 | 28.856 | 201 | 92 | 8 | 36 | 186 | 95 | 294 | 4.03e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012118.01.T01 | AT3G54400 | 60.099 | 203 | 51 | 3 | 4 | 176 | 55 | 257 | 3.19e-75 | 234 |
| MsG0380012118.01.T01 | AT5G07030 | 61.765 | 204 | 48 | 2 | 3 | 176 | 82 | 285 | 5.12e-68 | 216 |
| MsG0380012118.01.T01 | AT1G09750 | 46.262 | 214 | 76 | 4 | 1 | 176 | 67 | 279 | 5.46e-55 | 182 |
| MsG0380012118.01.T01 | AT5G10770 | 29.208 | 202 | 103 | 5 | 13 | 176 | 109 | 308 | 9.75e-15 | 73.2 |
Find 120 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTAACTTGGAAGCAATT+AGG | 0.215956 | 3:+11092194 | MsG0380012118.01.T01:CDS |
| ATGTGGACTGATAGAGGTTT+TGG | 0.221853 | 3:-11092043 | None:intergenic |
| TACATTGTTAGGGCTAAAAT+TGG | 0.237202 | 3:+11089934 | MsG0380012118.01.T01:CDS |
| AGAGTCCAACTTACATTGTT+AGG | 0.250009 | 3:+11089923 | MsG0380012118.01.T01:CDS |
| TCGTGCAAGTTCACGGGTTA+TGG | 0.253778 | 3:+11093174 | MsG0380012118.01.T01:three_prime_UTR |
| ATTAAAACCATGAATATAAA+TGG | 0.256477 | 3:-11092920 | None:intergenic |
| TACTAATAAAATGGTCAATA+TGG | 0.278950 | 3:+11092859 | MsG0380012118.01.T01:three_prime_UTR |
| TTCAAGTCTCTTAACTTCTC+TGG | 0.284577 | 3:+11092086 | MsG0380012118.01.T01:CDS |
| TTGTTTGGGTAATGGTAATA+TGG | 0.291779 | 3:+11092893 | MsG0380012118.01.T01:three_prime_UTR |
| GTTATTGTGGGTACAACTAT+TGG | 0.294174 | 3:-11092631 | None:intergenic |
| TGGTACTCCATTTATATTCA+TGG | 0.299093 | 3:+11092913 | MsG0380012118.01.T01:three_prime_UTR |
| TGCCCCACCACAAGGTCTAT+TGG | 0.300448 | 3:+11091983 | MsG0380012118.01.T01:CDS |
| ATGGCATTAGAAAAGTTGTT+TGG | 0.306401 | 3:+11092878 | MsG0380012118.01.T01:three_prime_UTR |
| TAATAGAGTGATGATCTTCT+AGG | 0.307781 | 3:-11092172 | None:intergenic |
| AATTTAATCCACACACAATA+TGG | 0.311808 | 3:-11093002 | None:intergenic |
| ACTTCAATTCCTTGATAGTT+TGG | 0.314174 | 3:+11089852 | MsG0380012118.01.T01:CDS |
| TGTTAACTTGGAAGCAATTA+GGG | 0.316746 | 3:+11092195 | MsG0380012118.01.T01:CDS |
| TTGAAGTCTAGTTGTGTCTT+TGG | 0.320386 | 3:-11089836 | None:intergenic |
| GCCCCACCACAAGGTCTATT+GGG | 0.322798 | 3:+11091984 | MsG0380012118.01.T01:CDS |
| ACCACAAGGTCTATTGGGCT+TGG | 0.324083 | 3:+11091989 | MsG0380012118.01.T01:CDS |
| ATCCTCTTGGGCTGAGCAAC+AGG | 0.344589 | 3:-11092125 | None:intergenic |
| TCAGTTGTACCTATTGCTTC+TGG | 0.351822 | 3:+11089886 | MsG0380012118.01.T01:CDS |
| TCCACCTCAAACTTTGCTTT+TGG | 0.353103 | 3:+11089960 | MsG0380012118.01.T01:CDS |
| TGAGCTATGTACTAATAAAA+TGG | 0.376219 | 3:+11092850 | MsG0380012118.01.T01:three_prime_UTR |
| TAGAAAAGTTGTTTGGGTAA+TGG | 0.389268 | 3:+11092885 | MsG0380012118.01.T01:three_prime_UTR |
| TGGCATTAGAAAAGTTGTTT+GGG | 0.395633 | 3:+11092879 | MsG0380012118.01.T01:three_prime_UTR |
| AGCAACCCAACCCTAGAGTT+AGG | 0.397947 | 3:-11092825 | None:intergenic |
| TTCCTCTATTGCTGCTAACT+TGG | 0.399833 | 3:+11091881 | MsG0380012118.01.T01:CDS |
| CAACACCGAGTTCACGTTAT+CGG | 0.406159 | 3:-11092751 | None:intergenic |
| TCAAGTCTCTTAACTTCTCT+GGG | 0.406816 | 3:+11092087 | MsG0380012118.01.T01:CDS |
| AGGGATGTCACTGTGAGCTT+TGG | 0.406981 | 3:-11092580 | None:intergenic |
| TTATTGTGGGTACAACTATT+GGG | 0.409081 | 3:-11092630 | None:intergenic |
| AACACCGAGTTCACGTTATC+GGG | 0.416344 | 3:-11092750 | None:intergenic |
| TTCTCTGGGTCTTTGAGACT+TGG | 0.418986 | 3:+11092101 | MsG0380012118.01.T01:CDS |
| GATTCCTTGCACTGCTGTGA+TGG | 0.422634 | 3:+11090011 | MsG0380012118.01.T01:CDS |
| GGTCTATTGGGCTTGGGCCG+AGG | 0.426354 | 3:+11091996 | MsG0380012118.01.T01:CDS |
| ATGTCCCTAACTCTAGGGTT+GGG | 0.426588 | 3:+11092820 | MsG0380012118.01.T01:three_prime_UTR |
| ACGAGTTCCGGCGAAGAGTT+GGG | 0.449433 | 3:+11092557 | MsG0380012118.01.T01:CDS |
| TCGCGGTCAGAGACGAGTTC+CGG | 0.451366 | 3:+11092545 | MsG0380012118.01.T01:CDS |
| CCGAATGTGTAGCTAGGAAC+TGG | 0.451414 | 3:-11091933 | None:intergenic |
| GATGTCCCTAACTCTAGGGT+TGG | 0.453769 | 3:+11092819 | MsG0380012118.01.T01:three_prime_UTR |
| GAGTCCAACTTACATTGTTA+GGG | 0.456447 | 3:+11089924 | MsG0380012118.01.T01:CDS |
| TCATTGATGTCCCTAACTCT+AGG | 0.457703 | 3:+11092814 | MsG0380012118.01.T01:three_prime_UTR |
| ATACAAATATAACTCAACTT+TGG | 0.457825 | 3:-11093036 | None:intergenic |
| CCACAAGGTCTATTGGGCTT+GGG | 0.462842 | 3:+11091990 | MsG0380012118.01.T01:CDS |
| GTTATCGGGCGCGGCTGCCA+TGG | 0.467214 | 3:-11092736 | None:intergenic |
| GACGAGTTCCGGCGAAGAGT+TGG | 0.471255 | 3:+11092556 | MsG0380012118.01.T01:CDS |
| ACAATAACATTCATGTTCTC+TGG | 0.476619 | 3:+11092646 | MsG0380012118.01.T01:three_prime_UTR |
| TACCAAGTTAGCAGCAATAG+AGG | 0.476643 | 3:-11091883 | None:intergenic |
| TAATTAATCGTGCAAGTTCA+CGG | 0.477436 | 3:+11093167 | MsG0380012118.01.T01:three_prime_UTR |
| ATCACTCTATTATGTTAACT+TGG | 0.480477 | 3:+11092183 | MsG0380012118.01.T01:CDS |
| TGCCTGCGGTGCTATGTATA+AGG | 0.481118 | 3:-11092699 | None:intergenic |
| TTCTAGCTACCAAACTATCA+AGG | 0.482357 | 3:-11089861 | None:intergenic |
| GAGGGGTATACTAATCCTCT+TGG | 0.482676 | 3:-11092138 | None:intergenic |
| TAGAGGAACTGCCATAGGTT+AGG | 0.483289 | 3:-11091866 | None:intergenic |
| TGCAATTTCAACCTAACCTA+TGG | 0.486060 | 3:+11091855 | MsG0380012118.01.T01:CDS |
| ATTTGTCTACCAGAAGCAAT+AGG | 0.487565 | 3:-11089895 | None:intergenic |
| CATGAGCTCACACCACAACT+AGG | 0.490130 | 3:-11091834 | None:intergenic |
| AGCATGTGTCAAACCCTCCT+AGG | 0.490363 | 3:-11092600 | None:intergenic |
| TTAGCCCTAACAATGTAAGT+TGG | 0.493596 | 3:-11089928 | None:intergenic |
| AATTAATCGTGCAAGTTCAC+GGG | 0.495787 | 3:+11093168 | MsG0380012118.01.T01:three_prime_UTR |
| TTTGAGACAAAAGTGACAAC+GGG | 0.499233 | 3:-11092019 | None:intergenic |
| CCAGTTCCTAGCTACACATT+CGG | 0.501249 | 3:+11091933 | MsG0380012118.01.T01:CDS |
| CATTGATGTCCCTAACTCTA+GGG | 0.503024 | 3:+11092815 | MsG0380012118.01.T01:three_prime_UTR |
| AAGAGAATGTGGACTGATAG+AGG | 0.503256 | 3:-11092049 | None:intergenic |
| TCTCTGACCGCGACATAGAC+TGG | 0.507592 | 3:-11092535 | None:intergenic |
| ACAAAAGTGACAACGGGCCT+CGG | 0.507840 | 3:-11092013 | None:intergenic |
| TTCTAGGGTTCTTGAGAAGA+GGG | 0.513267 | 3:-11092156 | None:intergenic |
| GCAACCCAACCCTAGAGTTA+GGG | 0.520593 | 3:-11092824 | None:intergenic |
| TACCAGGTACCGTGTTTACT+CGG | 0.522295 | 3:+11092503 | MsG0380012118.01.T01:intron |
| AGGGGTATACTAATCCTCTT+GGG | 0.533131 | 3:-11092137 | None:intergenic |
| AATAGAGTGATGATCTTCTA+GGG | 0.533715 | 3:-11092171 | None:intergenic |
| AGCATCATTACTAGTATCCA+TGG | 0.542507 | 3:-11089983 | None:intergenic |
| CTTCTAGGGTTCTTGAGAAG+AGG | 0.543537 | 3:-11092157 | None:intergenic |
| AGAGAACATGAATGTTATTG+TGG | 0.546745 | 3:-11092644 | None:intergenic |
| CTCACACCACAACTAGGGTT+AGG | 0.549658 | 3:-11091828 | None:intergenic |
| CGAGTTCACGTTATCGGGCG+CGG | 0.555456 | 3:-11092745 | None:intergenic |
| ATACTAGTAATGATGCTGCT+TGG | 0.557490 | 3:+11089989 | MsG0380012118.01.T01:CDS |
| GCAGCACCACGTGTTTGCCA+TGG | 0.558710 | 3:+11092719 | MsG0380012118.01.T01:three_prime_UTR |
| CGGCTGCCATGGCAAACACG+TGG | 0.558949 | 3:-11092725 | None:intergenic |
| AAGCTCACAGTGACATCCCT+AGG | 0.564717 | 3:+11092583 | MsG0380012118.01.T01:CDS |
| ATGGCCAAAAGCAAAGTTTG+AGG | 0.566083 | 3:-11089964 | None:intergenic |
| GAGAACATGAATGTTATTGT+GGG | 0.566607 | 3:-11092643 | None:intergenic |
| AGGAACTGGATCAGTGGCTA+AGG | 0.567544 | 3:-11091919 | None:intergenic |
| AGCCCAATAGACCTTGTGGT+GGG | 0.567593 | 3:-11091986 | None:intergenic |
| CGCGCCCGATAACGTGAACT+CGG | 0.569919 | 3:+11092746 | MsG0380012118.01.T01:three_prime_UTR |
| TAATGGTGAGTGTGTGTCAC+GGG | 0.573160 | 3:+11093064 | MsG0380012118.01.T01:three_prime_UTR |
| AAGTTAAGAGACTTGAAACT+TGG | 0.573810 | 3:-11092080 | None:intergenic |
| CAGGTACCTAACCCTAGTTG+TGG | 0.574866 | 3:+11091822 | MsG0380012118.01.T01:intron |
| GCATGTGTCAAACCCTCCTA+GGG | 0.576135 | 3:-11092599 | None:intergenic |
| GCTTTGGCCCAACTCTTCGC+CGG | 0.583717 | 3:-11092564 | None:intergenic |
| GCCCAATAGACCTTGTGGTG+GGG | 0.592501 | 3:-11091985 | None:intergenic |
| CAAACACGTGGTGCTGCCTG+CGG | 0.592640 | 3:-11092713 | None:intergenic |
| ATCCTTATACATAGCACCGC+AGG | 0.593768 | 3:+11092697 | MsG0380012118.01.T01:three_prime_UTR |
| GACCTGTTGCTCAGCCCAAG+AGG | 0.602178 | 3:+11092123 | MsG0380012118.01.T01:CDS |
| GGCACTTCTGCCCCACCACA+AGG | 0.603196 | 3:+11091975 | MsG0380012118.01.T01:CDS |
| GCCAAAAGCAAAGTTTGAGG+TGG | 0.603568 | 3:-11089961 | None:intergenic |
| ACACAACCGAATGTGTAGCT+AGG | 0.605985 | 3:-11091939 | None:intergenic |
| TGGCAAACAGTAAGAGAATG+TGG | 0.607273 | 3:-11092060 | None:intergenic |
| ATGAGCTCACACCACAACTA+GGG | 0.616988 | 3:-11091833 | None:intergenic |
| AAGCCCAATAGACCTTGTGG+TGG | 0.617029 | 3:-11091987 | None:intergenic |
| CAAGCTAGGTAGCTAGCTAG+AGG | 0.617249 | 3:-11093095 | None:intergenic |
| GTAATGGTGAGTGTGTGTCA+CGG | 0.620572 | 3:+11093063 | MsG0380012118.01.T01:three_prime_UTR |
| TGCAACTAGCCGAGTAAACA+CGG | 0.620584 | 3:-11092512 | None:intergenic |
| TGGTGGGGCAGAAGTGCCTG+TGG | 0.622551 | 3:-11091970 | None:intergenic |
| CCCAAGCCCAATAGACCTTG+TGG | 0.625674 | 3:-11091990 | None:intergenic |
| CTCACAGTGACATCCCTAGG+AGG | 0.629537 | 3:+11092586 | MsG0380012118.01.T01:CDS |
| ACAACCATCACAGCAGTGCA+AGG | 0.631126 | 3:-11090015 | None:intergenic |
| AGCAATAGAGGAACTGCCAT+AGG | 0.635860 | 3:-11091871 | None:intergenic |
| GCTCAAAATCTTACACCATG+TGG | 0.641307 | 3:-11092971 | None:intergenic |
| TCACAGTGACATCCCTAGGA+GGG | 0.649521 | 3:+11092587 | MsG0380012118.01.T01:CDS |
| TAGGTTTGATTCTAACCACA+TGG | 0.650604 | 3:+11092956 | MsG0380012118.01.T01:three_prime_UTR |
| TCTAGGGTTCTTGAGAAGAG+GGG | 0.652701 | 3:-11092155 | None:intergenic |
| TAAGAACTCCATATTGTGTG+TGG | 0.659295 | 3:+11092994 | MsG0380012118.01.T01:three_prime_UTR |
| GTTTGAGACAAAAGTGACAA+CGG | 0.666616 | 3:-11092020 | None:intergenic |
| GTAGCTAGGAACTGGATCAG+TGG | 0.674788 | 3:-11091925 | None:intergenic |
| AGTTGCACCAGTCTATGTCG+CGG | 0.693109 | 3:+11092528 | MsG0380012118.01.T01:CDS |
| TGTATAAGGATGTTGTCTTG+TGG | 0.694390 | 3:-11092685 | None:intergenic |
| TAGGGACATCAATGAGCACA+CGG | 0.705781 | 3:-11092806 | None:intergenic |
| GGACATCAATGAGCACACGG+TGG | 0.780138 | 3:-11092803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTAGTAAAACTTA+GGG | - | Chr3:11091034-11091053 | None:intergenic | 10.0% |
| !!! | AATATTACAATTTTTTATGA+AGG | - | Chr3:11090520-11090539 | None:intergenic | 10.0% |
| !!! | TTATATTTGTATTTTTGTAA+TGG | + | Chr3:11093047-11093066 | MsG0380012118.01.T01:three_prime_UTR | 10.0% |
| !! | AATTATTAGAATAAATACCT+TGG | - | Chr3:11090489-11090508 | None:intergenic | 15.0% |
| !! | ATTAAAACCATGAATATAAA+TGG | - | Chr3:11092923-11092942 | None:intergenic | 15.0% |
| !!! | AATCAACTTAGATTTTAAAT+TGG | - | Chr3:11090371-11090390 | None:intergenic | 15.0% |
| !!! | ACTACTTAAATTATTTTACT+TGG | + | Chr3:11091180-11091199 | MsG0380012118.01.T01:intron | 15.0% |
| !!! | ATCAACTTAGATTTTAAATT+GGG | - | Chr3:11090370-11090389 | None:intergenic | 15.0% |
| !!! | ATTAACTTGAAGAATTTAAT+TGG | - | Chr3:11090995-11091014 | None:intergenic | 15.0% |
| !!! | CAAATATTTTAGTAAAACTT+AGG | - | Chr3:11091035-11091054 | None:intergenic | 15.0% |
| !!! | CTAAGTTTTACTAAAATATT+TGG | + | Chr3:11091033-11091052 | MsG0380012118.01.T01:intron | 15.0% |
| !!! | TATAACATAACCTATTTTTT+TGG | - | Chr3:11091138-11091157 | None:intergenic | 15.0% |
| !!! | TTTATTTTGTTTCATTTTTC+AGG | + | Chr3:11091803-11091822 | MsG0380012118.01.T01:intron | 15.0% |
| !!! | TTTTGTTTAAAAAATTACGA+AGG | + | Chr3:11090233-11090252 | MsG0380012118.01.T01:intron | 15.0% |
| !! | AAAAAAAATATGTAAGAGCT+TGG | - | Chr3:11090401-11090420 | None:intergenic | 20.0% |
| !! | AAAAAATGTTCATGAAGAAA+AGG | - | Chr3:11090442-11090461 | None:intergenic | 20.0% |
| !! | AAAGAATCATGATATGATTA+TGG | - | Chr3:11092465-11092484 | None:intergenic | 20.0% |
| !! | AATTGTTGTACCAAAAAAAT+AGG | + | Chr3:11091125-11091144 | MsG0380012118.01.T01:intron | 20.0% |
| !! | ATACAAATATAACTCAACTT+TGG | - | Chr3:11093039-11093058 | None:intergenic | 20.0% |
| !! | ATTTATTGTTAAACATTACC+AGG | + | Chr3:11092487-11092506 | MsG0380012118.01.T01:intron | 20.0% |
| !! | GTACTAATTTCATAATGAAA+GGG | + | Chr3:11091264-11091283 | MsG0380012118.01.T01:intron | 20.0% |
| !! | TAAATTGAACTAAGTTTAGT+TGG | + | Chr3:11091621-11091640 | MsG0380012118.01.T01:intron | 20.0% |
| !! | TACATAAAAATTGTTTGAAC+TGG | + | Chr3:11090895-11090914 | MsG0380012118.01.T01:intron | 20.0% |
| !! | TACTAATAAAATGGTCAATA+TGG | + | Chr3:11092859-11092878 | MsG0380012118.01.T01:three_prime_UTR | 20.0% |
| !! | TGAATTGATATAACTTATCA+TGG | - | Chr3:11091740-11091759 | None:intergenic | 20.0% |
| !! | TTAAAATAGAAATATGACAG+TGG | - | Chr3:11090798-11090817 | None:intergenic | 20.0% |
| !!! | AATATTTTGGATTCATAGAT+TGG | - | Chr3:11091368-11091387 | None:intergenic | 20.0% |
| !!! | ATATTTTGGATTCATAGATT+GGG | - | Chr3:11091367-11091386 | None:intergenic | 20.0% |
| !!! | CAATGTTTTAAAAATGAGAT+AGG | - | Chr3:11091767-11091786 | None:intergenic | 20.0% |
| !!! | CTATCTCATTTTTAAAACAT+TGG | + | Chr3:11091765-11091784 | MsG0380012118.01.T01:intron | 20.0% |
| !!! | TGGTTTTAATTTTTAGCATA+TGG | + | Chr3:11092933-11092952 | MsG0380012118.01.T01:three_prime_UTR | 20.0% |
| !!! | TTAAATGTAGTTGATTTTTC+AGG | - | Chr3:11090059-11090078 | None:intergenic | 20.0% |
| !!! | TTCTTCATGAACATTTTTTT+CGG | + | Chr3:11090443-11090462 | MsG0380012118.01.T01:intron | 20.0% |
| !!! | TTTAATTTTTAGCATATGGT+AGG | + | Chr3:11092937-11092956 | MsG0380012118.01.T01:three_prime_UTR | 20.0% |
| ! | AAGTCATCATGCTTAAAAAT+TGG | + | Chr3:11091468-11091487 | MsG0380012118.01.T01:intron | 25.0% |
| ! | AATAATGAGTATCTTTGGTT+TGG | - | Chr3:11090771-11090790 | None:intergenic | 25.0% |
| ! | AATTTAATCCACACACAATA+TGG | - | Chr3:11093005-11093024 | None:intergenic | 25.0% |
| ! | AGAATAACCAACTGATAAAT+CGG | - | Chr3:11091531-11091550 | None:intergenic | 25.0% |
| ! | ATCACTCTATTATGTTAACT+TGG | + | Chr3:11092183-11092202 | MsG0380012118.01.T01:CDS | 25.0% |
| ! | ATTATATGCAAACTCTATCA+TGG | + | Chr3:11090550-11090569 | MsG0380012118.01.T01:intron | 25.0% |
| ! | CAATGATGCAATTGTAATTA+TGG | + | Chr3:11090288-11090307 | MsG0380012118.01.T01:intron | 25.0% |
| ! | GACAAAATAATGAGTATCTT+TGG | - | Chr3:11090776-11090795 | None:intergenic | 25.0% |
| ! | GGTACTAATTTCATAATGAA+AGG | + | Chr3:11091263-11091282 | MsG0380012118.01.T01:intron | 25.0% |
| ! | GGTTTATTATGGTTTAGTAA+TGG | + | Chr3:11091692-11091711 | MsG0380012118.01.T01:intron | 25.0% |
| ! | TAATAAACCAACCAATGTAT+TGG | - | Chr3:11091681-11091700 | None:intergenic | 25.0% |
| ! | TCAACTACATTTAAGAATGT+TGG | + | Chr3:11090065-11090084 | MsG0380012118.01.T01:intron | 25.0% |
| ! | TGAGCTATGTACTAATAAAA+TGG | + | Chr3:11092850-11092869 | MsG0380012118.01.T01:three_prime_UTR | 25.0% |
| !! | TGTCGAATATTTGTTGAAAA+AGG | + | Chr3:11090627-11090646 | MsG0380012118.01.T01:intron | 25.0% |
| !!! | AACAGTGAAAGATTTGTTTT+GGG | + | Chr3:11090923-11090942 | MsG0380012118.01.T01:intron | 25.0% |
| !!! | AATGAGTTATTTTTACTCCA+AGG | + | Chr3:11090469-11090488 | MsG0380012118.01.T01:intron | 25.0% |
| !!! | ATACATTGGTTGGTTTATTA+TGG | + | Chr3:11091681-11091700 | MsG0380012118.01.T01:intron | 25.0% |
| !!! | CTTGTTTTCGTGTTTTATAT+TGG | + | Chr3:11090157-11090176 | MsG0380012118.01.T01:intron | 25.0% |
| AAAAAGACACAAATCAAGCT+AGG | - | Chr3:11093112-11093131 | None:intergenic | 30.0% | |
| AAGTTAAGAGACTTGAAACT+TGG | - | Chr3:11092083-11092102 | None:intergenic | 30.0% | |
| AATAGAGTGATGATCTTCTA+GGG | - | Chr3:11092174-11092193 | None:intergenic | 30.0% | |
| ACAATAACATTCATGTTCTC+TGG | + | Chr3:11092646-11092665 | MsG0380012118.01.T01:three_prime_UTR | 30.0% | |
| AGAGAACATGAATGTTATTG+TGG | - | Chr3:11092647-11092666 | None:intergenic | 30.0% | |
| ATAACTTATCATGGTTCAGT+TGG | - | Chr3:11091731-11091750 | None:intergenic | 30.0% | |
| ATGGCATTAGAAAAGTTGTT+TGG | + | Chr3:11092878-11092897 | MsG0380012118.01.T01:three_prime_UTR | 30.0% | |
| GAGAACATGAATGTTATTGT+GGG | - | Chr3:11092646-11092665 | None:intergenic | 30.0% | |
| TAATAGAGTGATGATCTTCT+AGG | - | Chr3:11092175-11092194 | None:intergenic | 30.0% | |
| TAATTAATCGTGCAAGTTCA+CGG | + | Chr3:11093167-11093186 | MsG0380012118.01.T01:three_prime_UTR | 30.0% | |
| TACATTGTTAGGGCTAAAAT+TGG | + | Chr3:11089934-11089953 | MsG0380012118.01.T01:CDS | 30.0% | |
| TAGAAAAGTTGTTTGGGTAA+TGG | + | Chr3:11092885-11092904 | MsG0380012118.01.T01:three_prime_UTR | 30.0% | |
| TCAAAAATCGACCAATACAT+TGG | + | Chr3:11091667-11091686 | MsG0380012118.01.T01:intron | 30.0% | |
| TGGCATTAGAAAAGTTGTTT+GGG | + | Chr3:11092879-11092898 | MsG0380012118.01.T01:three_prime_UTR | 30.0% | |
| TGGTACTCCATTTATATTCA+TGG | + | Chr3:11092913-11092932 | MsG0380012118.01.T01:three_prime_UTR | 30.0% | |
| TTAAGCATGATGACTTCATT+GGG | - | Chr3:11091464-11091483 | None:intergenic | 30.0% | |
| TTATTGTGGGTACAACTATT+GGG | - | Chr3:11092633-11092652 | None:intergenic | 30.0% | |
| TTTAAGCATGATGACTTCAT+TGG | - | Chr3:11091465-11091484 | None:intergenic | 30.0% | |
| ! | AAATTGACCGATTTATCAGT+TGG | + | Chr3:11091521-11091540 | MsG0380012118.01.T01:intron | 30.0% |
| ! | ACTTCAATTCCTTGATAGTT+TGG | + | Chr3:11089852-11089871 | MsG0380012118.01.T01:CDS | 30.0% |
| ! | ATGTTAACTTGGAAGCAATT+AGG | + | Chr3:11092194-11092213 | MsG0380012118.01.T01:CDS | 30.0% |
| ! | GCACATAGCTTTCAATATTT+TGG | - | Chr3:11091381-11091400 | None:intergenic | 30.0% |
| ! | GTTTTCGTGTTTTATATTGG+CGG | + | Chr3:11090160-11090179 | MsG0380012118.01.T01:intron | 30.0% |
| ! | TGTTAACTTGGAAGCAATTA+GGG | + | Chr3:11092195-11092214 | MsG0380012118.01.T01:CDS | 30.0% |
| ! | TTGTTTGGGTAATGGTAATA+TGG | + | Chr3:11092893-11092912 | MsG0380012118.01.T01:three_prime_UTR | 30.0% |
| !! | CAACAGTGAAAGATTTGTTT+TGG | + | Chr3:11090922-11090941 | MsG0380012118.01.T01:intron | 30.0% |
| !! | CTAAGAGTATATTTTCATGC+CGG | - | Chr3:11092322-11092341 | None:intergenic | 30.0% |
| !!! | TTTTTTACCTGTTTGCATTC+AGG | - | Chr3:11090101-11090120 | None:intergenic | 30.0% |
| AAATCGACCAATACATTGGT+TGG | + | Chr3:11091671-11091690 | MsG0380012118.01.T01:intron | 35.0% | |
| AATTAATCGTGCAAGTTCAC+GGG | + | Chr3:11093168-11093187 | MsG0380012118.01.T01:three_prime_UTR | 35.0% | |
| AGAGTCCAACTTACATTGTT+AGG | + | Chr3:11089923-11089942 | MsG0380012118.01.T01:CDS | 35.0% | |
| AGCATCATTACTAGTATCCA+TGG | - | Chr3:11089986-11090005 | None:intergenic | 35.0% | |
| ATACTAGTAATGATGCTGCT+TGG | + | Chr3:11089989-11090008 | MsG0380012118.01.T01:CDS | 35.0% | |
| ATTTGTCTACCAGAAGCAAT+AGG | - | Chr3:11089898-11089917 | None:intergenic | 35.0% | |
| GAGTCCAACTTACATTGTTA+GGG | + | Chr3:11089924-11089943 | MsG0380012118.01.T01:CDS | 35.0% | |
| GTTATTGTGGGTACAACTAT+TGG | - | Chr3:11092634-11092653 | None:intergenic | 35.0% | |
| TAAGAACTCCATATTGTGTG+TGG | + | Chr3:11092994-11093013 | MsG0380012118.01.T01:three_prime_UTR | 35.0% | |
| TAGGTTTGATTCTAACCACA+TGG | + | Chr3:11092956-11092975 | MsG0380012118.01.T01:three_prime_UTR | 35.0% | |
| TATCAGTTGGTTATTCTCGA+TGG | + | Chr3:11091534-11091553 | MsG0380012118.01.T01:intron | 35.0% | |
| TCAAGTCTCTTAACTTCTCT+GGG | + | Chr3:11092087-11092106 | MsG0380012118.01.T01:CDS | 35.0% | |
| TCATAATGAAAGGGACTACA+AGG | + | Chr3:11091273-11091292 | MsG0380012118.01.T01:intron | 35.0% | |
| TGCAATTTCAACCTAACCTA+TGG | + | Chr3:11091855-11091874 | MsG0380012118.01.T01:CDS | 35.0% | |
| TGTATAAGGATGTTGTCTTG+TGG | - | Chr3:11092688-11092707 | None:intergenic | 35.0% | |
| TTAGCCCTAACAATGTAAGT+TGG | - | Chr3:11089931-11089950 | None:intergenic | 35.0% | |
| TTCAAGTCTCTTAACTTCTC+TGG | + | Chr3:11092086-11092105 | MsG0380012118.01.T01:CDS | 35.0% | |
| TTGAAGTCTAGTTGTGTCTT+TGG | - | Chr3:11089839-11089858 | None:intergenic | 35.0% | |
| ! | ATGTTTTGTCAACTAGCTAG+TGG | + | Chr3:11090577-11090596 | MsG0380012118.01.T01:intron | 35.0% |
| ! | CAGTTGTGATTTGTACATTG+TGG | - | Chr3:11090850-11090869 | None:intergenic | 35.0% |
| ! | GTTTGAGACAAAAGTGACAA+CGG | - | Chr3:11092023-11092042 | None:intergenic | 35.0% |
| ! | TTCTAGCTACCAAACTATCA+AGG | - | Chr3:11089864-11089883 | None:intergenic | 35.0% |
| ! | TTTGAGACAAAAGTGACAAC+GGG | - | Chr3:11092022-11092041 | None:intergenic | 35.0% |
| AACTTGGAAGCAATTAGGGT+TGG | + | Chr3:11092199-11092218 | MsG0380012118.01.T01:intron | 40.0% | |
| ACCTGAATCAAAGATGGTAC+CGG | - | Chr3:11092281-11092300 | None:intergenic | 40.0% | |
| ATGGCCAAAAGCAAAGTTTG+AGG | - | Chr3:11089967-11089986 | None:intergenic | 40.0% | |
| CATTGATGTCCCTAACTCTA+GGG | + | Chr3:11092815-11092834 | MsG0380012118.01.T01:three_prime_UTR | 40.0% | |
| GCTCAAAATCTTACACCATG+TGG | - | Chr3:11092974-11092993 | None:intergenic | 40.0% | |
| GGTTGTGTTTCAAAAACCAC+AGG | + | Chr3:11091954-11091973 | MsG0380012118.01.T01:CDS | 40.0% | |
| TACCAAGTTAGCAGCAATAG+AGG | - | Chr3:11091886-11091905 | None:intergenic | 40.0% | |
| TCAGTTGTACCTATTGCTTC+TGG | + | Chr3:11089886-11089905 | MsG0380012118.01.T01:CDS | 40.0% | |
| TCATTGATGTCCCTAACTCT+AGG | + | Chr3:11092814-11092833 | MsG0380012118.01.T01:three_prime_UTR | 40.0% | |
| TGAAAGCTATGTGCTCTCTA+TGG | + | Chr3:11091387-11091406 | MsG0380012118.01.T01:intron | 40.0% | |
| TGGCAAACAGTAAGAGAATG+TGG | - | Chr3:11092063-11092082 | None:intergenic | 40.0% | |
| TTCCTCTATTGCTGCTAACT+TGG | + | Chr3:11091881-11091900 | MsG0380012118.01.T01:CDS | 40.0% | |
| ! | AAGAGAATGTGGACTGATAG+AGG | - | Chr3:11092052-11092071 | None:intergenic | 40.0% |
| ! | AGGGGTATACTAATCCTCTT+GGG | - | Chr3:11092140-11092159 | None:intergenic | 40.0% |
| ! | GAGGAATATCGACGACTTTT+CGG | - | Chr3:11092225-11092244 | None:intergenic | 40.0% |
| ! | GCAACTTTTGTCCCATTGTA+GGG | + | Chr3:11091322-11091341 | MsG0380012118.01.T01:intron | 40.0% |
| ! | GGTGTTACCTGAATCAAAGA+TGG | - | Chr3:11092287-11092306 | None:intergenic | 40.0% |
| ! | GTATATTTTCATGCCGGAGT+AGG | - | Chr3:11092316-11092335 | None:intergenic | 40.0% |
| ! | TAACACCCTTTTACCTACTC+CGG | + | Chr3:11092300-11092319 | MsG0380012118.01.T01:intron | 40.0% |
| ! | TCCACCTCAAACTTTGCTTT+TGG | + | Chr3:11089960-11089979 | MsG0380012118.01.T01:CDS | 40.0% |
| ! | TCTTTTACCTTACTTGCCGT+GGG | + | Chr3:11091237-11091256 | MsG0380012118.01.T01:intron | 40.0% |
| ! | TGCAACTTTTGTCCCATTGT+AGG | + | Chr3:11091321-11091340 | MsG0380012118.01.T01:intron | 40.0% |
| !! | ATGTGGACTGATAGAGGTTT+TGG | - | Chr3:11092046-11092065 | None:intergenic | 40.0% |
| !! | TCAAACTTTGCTTTTGGCCA+TGG | + | Chr3:11089966-11089985 | MsG0380012118.01.T01:CDS | 40.0% |
| !! | TGTGGACTGATAGAGGTTTT+GGG | - | Chr3:11092045-11092064 | None:intergenic | 40.0% |
| !! | TTCTAGGGTTCTTGAGAAGA+GGG | - | Chr3:11092159-11092178 | None:intergenic | 40.0% |
| AACACCGAGTTCACGTTATC+GGG | - | Chr3:11092753-11092772 | None:intergenic | 45.0% | |
| AAGTCAACCCACCCTACAAT+GGG | - | Chr3:11091336-11091355 | None:intergenic | 45.0% | |
| ACACAACCGAATGTGTAGCT+AGG | - | Chr3:11091942-11091961 | None:intergenic | 45.0% | |
| AGCAATAGAGGAACTGCCAT+AGG | - | Chr3:11091874-11091893 | None:intergenic | 45.0% | |
| AGCTCACATGACATACAGCT+TGG | + | Chr3:11091208-11091227 | MsG0380012118.01.T01:intron | 45.0% | |
| ATCCTTATACATAGCACCGC+AGG | + | Chr3:11092697-11092716 | MsG0380012118.01.T01:three_prime_UTR | 45.0% | |
| ATCGAAGCAGTCGTCTTAGT+CGG | + | Chr3:11091491-11091510 | MsG0380012118.01.T01:intron | 45.0% | |
| ATGAGCTCACACCACAACTA+GGG | - | Chr3:11091836-11091855 | None:intergenic | 45.0% | |
| CAACACCGAGTTCACGTTAT+CGG | - | Chr3:11092754-11092773 | None:intergenic | 45.0% | |
| CCAGTTCCTAGCTACACATT+CGG | + | Chr3:11091933-11091952 | MsG0380012118.01.T01:CDS | 45.0% | |
| GCCAAAAGCAAAGTTTGAGG+TGG | - | Chr3:11089964-11089983 | None:intergenic | 45.0% | |
| GTAATGGTGAGTGTGTGTCA+CGG | + | Chr3:11093063-11093082 | MsG0380012118.01.T01:three_prime_UTR | 45.0% | |
| TAAGTCAACCCACCCTACAA+TGG | - | Chr3:11091337-11091356 | None:intergenic | 45.0% | |
| TAATGGTGAGTGTGTGTCAC+GGG | + | Chr3:11093064-11093083 | MsG0380012118.01.T01:three_prime_UTR | 45.0% | |
| TAGAGGAACTGCCATAGGTT+AGG | - | Chr3:11091869-11091888 | None:intergenic | 45.0% | |
| TAGGGACATCAATGAGCACA+CGG | - | Chr3:11092809-11092828 | None:intergenic | 45.0% | |
| TCATGCCGGAGTAGGTAAAA+GGG | - | Chr3:11092308-11092327 | None:intergenic | 45.0% | |
| TGAAATTAGTACCCTCCCCA+CGG | - | Chr3:11091256-11091275 | None:intergenic | 45.0% | |
| TGCAACTAGCCGAGTAAACA+CGG | - | Chr3:11092515-11092534 | None:intergenic | 45.0% | |
| TTCATGCCGGAGTAGGTAAA+AGG | - | Chr3:11092309-11092328 | None:intergenic | 45.0% | |
| ! | ACTTTTGTCCCATTGTAGGG+TGG | + | Chr3:11091325-11091344 | MsG0380012118.01.T01:intron | 45.0% |
| ! | CTTTTACCTTACTTGCCGTG+GGG | + | Chr3:11091238-11091257 | MsG0380012118.01.T01:intron | 45.0% |
| ! | CTTTTGTCCCATTGTAGGGT+GGG | + | Chr3:11091326-11091345 | MsG0380012118.01.T01:intron | 45.0% |
| ! | GAGGGGTATACTAATCCTCT+TGG | - | Chr3:11092141-11092160 | None:intergenic | 45.0% |
| ! | GTCTTTTACCTTACTTGCCG+TGG | + | Chr3:11091236-11091255 | MsG0380012118.01.T01:intron | 45.0% |
| ! | TACCAGGTACCGTGTTTACT+CGG | + | Chr3:11092503-11092522 | MsG0380012118.01.T01:intron | 45.0% |
| ! | TCTAGGGTTCTTGAGAAGAG+GGG | - | Chr3:11092158-11092177 | None:intergenic | 45.0% |
| !! | ATGTCCCTAACTCTAGGGTT+GGG | + | Chr3:11092820-11092839 | MsG0380012118.01.T01:three_prime_UTR | 45.0% |
| !! | CTTCTAGGGTTCTTGAGAAG+AGG | - | Chr3:11092160-11092179 | None:intergenic | 45.0% |
| !! | TTCTCTGGGTCTTTGAGACT+TGG | + | Chr3:11092101-11092120 | MsG0380012118.01.T01:CDS | 45.0% |
| !!! | GTGGTTTTGTTGCTGCATGT+TGG | - | Chr3:11092787-11092806 | None:intergenic | 45.0% |
| AAGCCCAATAGACCTTGTGG+TGG | - | Chr3:11091990-11092009 | None:intergenic | 50.0% | |
| AAGCTCACAGTGACATCCCT+AGG | + | Chr3:11092583-11092602 | MsG0380012118.01.T01:CDS | 50.0% | |
| ACAAAAGTGACAACGGGCCT+CGG | - | Chr3:11092016-11092035 | None:intergenic | 50.0% | |
| ACAACCATCACAGCAGTGCA+AGG | - | Chr3:11090018-11090037 | None:intergenic | 50.0% | |
| ACCACAAGGTCTATTGGGCT+TGG | + | Chr3:11091989-11092008 | MsG0380012118.01.T01:CDS | 50.0% | |
| AGCAACCCAACCCTAGAGTT+AGG | - | Chr3:11092828-11092847 | None:intergenic | 50.0% | |
| AGCATGTGTCAAACCCTCCT+AGG | - | Chr3:11092603-11092622 | None:intergenic | 50.0% | |
| AGCCCAATAGACCTTGTGGT+GGG | - | Chr3:11091989-11092008 | None:intergenic | 50.0% | |
| AGCTATGTGCTCTCTATGGC+AGG | + | Chr3:11091391-11091410 | MsG0380012118.01.T01:intron | 50.0% | |
| AGGAACTGGATCAGTGGCTA+AGG | - | Chr3:11091922-11091941 | None:intergenic | 50.0% | |
| AGGCAAAGGTTCACGAGACT+TGG | + | Chr3:11091411-11091430 | MsG0380012118.01.T01:intron | 50.0% | |
| AGGGATGTCACTGTGAGCTT+TGG | - | Chr3:11092583-11092602 | None:intergenic | 50.0% | |
| AGTTGCACCAGTCTATGTCG+CGG | + | Chr3:11092528-11092547 | MsG0380012118.01.T01:CDS | 50.0% | |
| CAAGCTAGGTAGCTAGCTAG+AGG | - | Chr3:11093098-11093117 | None:intergenic | 50.0% | |
| CAGGTACCTAACCCTAGTTG+TGG | + | Chr3:11091822-11091841 | MsG0380012118.01.T01:intron | 50.0% | |
| CATGAGCTCACACCACAACT+AGG | - | Chr3:11091837-11091856 | None:intergenic | 50.0% | |
| CCACAAGGTCTATTGGGCTT+GGG | + | Chr3:11091990-11092009 | MsG0380012118.01.T01:CDS | 50.0% | |
| CCGAATGTGTAGCTAGGAAC+TGG | - | Chr3:11091936-11091955 | None:intergenic | 50.0% | |
| CGATATTCCTCCAGCTGCAT+TGG | + | Chr3:11092234-11092253 | MsG0380012118.01.T01:intron | 50.0% | |
| CTCACACCACAACTAGGGTT+AGG | - | Chr3:11091831-11091850 | None:intergenic | 50.0% | |
| GATTCCTTGCACTGCTGTGA+TGG | + | Chr3:11090011-11090030 | MsG0380012118.01.T01:CDS | 50.0% | |
| GCAACCCAACCCTAGAGTTA+GGG | - | Chr3:11092827-11092846 | None:intergenic | 50.0% | |
| GCATGTGTCAAACCCTCCTA+GGG | - | Chr3:11092602-11092621 | None:intergenic | 50.0% | |
| GCCGGTACCATCTTTGATTC+AGG | + | Chr3:11092277-11092296 | MsG0380012118.01.T01:intron | 50.0% | |
| GGATTAAACGCCAATGCAGC+TGG | - | Chr3:11092247-11092266 | None:intergenic | 50.0% | |
| GTAGCTAGGAACTGGATCAG+TGG | - | Chr3:11091928-11091947 | None:intergenic | 50.0% | |
| TCACAGTGACATCCCTAGGA+GGG | + | Chr3:11092587-11092606 | MsG0380012118.01.T01:CDS | 50.0% | |
| TGCTGCTCCTGAATGCAAAC+AGG | + | Chr3:11090091-11090110 | MsG0380012118.01.T01:intron | 50.0% | |
| TTAAACGCCAATGCAGCTGG+AGG | - | Chr3:11092244-11092263 | None:intergenic | 50.0% | |
| TTGGCGTTTAATCCGACCAC+TGG | + | Chr3:11092253-11092272 | MsG0380012118.01.T01:intron | 50.0% | |
| TTTAATCCGACCACTGGAGC+CGG | + | Chr3:11092259-11092278 | MsG0380012118.01.T01:intron | 50.0% | |
| ! | TCGTGCAAGTTCACGGGTTA+TGG | + | Chr3:11093174-11093193 | MsG0380012118.01.T01:three_prime_UTR | 50.0% |
| !! | GATGTCCCTAACTCTAGGGT+TGG | + | Chr3:11092819-11092838 | MsG0380012118.01.T01:three_prime_UTR | 50.0% |
| !! | TGCCTGCGGTGCTATGTATA+AGG | - | Chr3:11092702-11092721 | None:intergenic | 50.0% |
| ACGAGTTCCGGCGAAGAGTT+GGG | + | Chr3:11092557-11092576 | MsG0380012118.01.T01:CDS | 55.0% | |
| AGCCGAGTAAACACGGTACC+TGG | - | Chr3:11092508-11092527 | None:intergenic | 55.0% | |
| ATCCTCTTGGGCTGAGCAAC+AGG | - | Chr3:11092128-11092147 | None:intergenic | 55.0% | |
| CCCAAGCCCAATAGACCTTG+TGG | - | Chr3:11091993-11092012 | None:intergenic | 55.0% | |
| CTCACAGTGACATCCCTAGG+AGG | + | Chr3:11092586-11092605 | MsG0380012118.01.T01:CDS | 55.0% | |
| GCCCAATAGACCTTGTGGTG+GGG | - | Chr3:11091988-11092007 | None:intergenic | 55.0% | |
| GCCCCACCACAAGGTCTATT+GGG | + | Chr3:11091984-11092003 | MsG0380012118.01.T01:CDS | 55.0% | |
| GGACATCAATGAGCACACGG+TGG | - | Chr3:11092806-11092825 | None:intergenic | 55.0% | |
| GTGCTCTCTATGGCAGGCAA+AGG | + | Chr3:11091397-11091416 | MsG0380012118.01.T01:intron | 55.0% | |
| TACCTTACTTGCCGTGGGGA+GGG | + | Chr3:11091242-11091261 | MsG0380012118.01.T01:intron | 55.0% | |
| TCTCTGACCGCGACATAGAC+TGG | - | Chr3:11092538-11092557 | None:intergenic | 55.0% | |
| TGCCCCACCACAAGGTCTAT+TGG | + | Chr3:11091983-11092002 | MsG0380012118.01.T01:CDS | 55.0% | |
| TTACCTTACTTGCCGTGGGG+AGG | + | Chr3:11091241-11091260 | MsG0380012118.01.T01:intron | 55.0% | |
| !! | AAAGATGGTACCGGCTCCAG+TGG | - | Chr3:11092272-11092291 | None:intergenic | 55.0% |
| CGAGTTCACGTTATCGGGCG+CGG | - | Chr3:11092748-11092767 | None:intergenic | 60.0% | |
| CGCGCCCGATAACGTGAACT+CGG | + | Chr3:11092746-11092765 | MsG0380012118.01.T01:three_prime_UTR | 60.0% | |
| GACCTGTTGCTCAGCCCAAG+AGG | + | Chr3:11092123-11092142 | MsG0380012118.01.T01:CDS | 60.0% | |
| GACGAGTTCCGGCGAAGAGT+TGG | + | Chr3:11092556-11092575 | MsG0380012118.01.T01:CDS | 60.0% | |
| GCAGCACCACGTGTTTGCCA+TGG | + | Chr3:11092719-11092738 | MsG0380012118.01.T01:three_prime_UTR | 60.0% | |
| GCTTTGGCCCAACTCTTCGC+CGG | - | Chr3:11092567-11092586 | None:intergenic | 60.0% | |
| TACCCTCCCCACGGCAAGTA+AGG | - | Chr3:11091247-11091266 | None:intergenic | 60.0% | |
| TCGCGGTCAGAGACGAGTTC+CGG | + | Chr3:11092545-11092564 | MsG0380012118.01.T01:CDS | 60.0% | |
| !! | ATGGTACCGGCTCCAGTGGT+CGG | - | Chr3:11092268-11092287 | None:intergenic | 60.0% |
| !! | CAAACACGTGGTGCTGCCTG+CGG | - | Chr3:11092716-11092735 | None:intergenic | 60.0% |
| CGGCTGCCATGGCAAACACG+TGG | - | Chr3:11092728-11092747 | None:intergenic | 65.0% | |
| GGCACTTCTGCCCCACCACA+AGG | + | Chr3:11091975-11091994 | MsG0380012118.01.T01:CDS | 65.0% | |
| GGTCTATTGGGCTTGGGCCG+AGG | + | Chr3:11091996-11092015 | MsG0380012118.01.T01:CDS | 65.0% | |
| !! | TGGTGGGGCAGAAGTGCCTG+TGG | - | Chr3:11091973-11091992 | None:intergenic | 65.0% |
| GTTATCGGGCGCGGCTGCCA+TGG | - | Chr3:11092739-11092758 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 11089829 | 11093205 | 11089829 | ID=MsG0380012118.01;Name=MsG0380012118.01 |
| Chr3 | mRNA | 11089829 | 11093205 | 11089829 | ID=MsG0380012118.01.T01;Parent=MsG0380012118.01;Name=MsG0380012118.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0|0.33|1|1|1|3|591|233 |
| Chr3 | exon | 11089829 | 11090032 | 11089829 | ID=MsG0380012118.01.T01:exon:1822;Parent=MsG0380012118.01.T01 |
| Chr3 | exon | 11091825 | 11092216 | 11091825 | ID=MsG0380012118.01.T01:exon:1823;Parent=MsG0380012118.01.T01 |
| Chr3 | exon | 11092509 | 11093205 | 11092509 | ID=MsG0380012118.01.T01:exon:1824;Parent=MsG0380012118.01.T01 |
| Chr3 | CDS | 11089829 | 11090032 | 11089829 | ID=MsG0380012118.01.T01:cds;Parent=MsG0380012118.01.T01 |
| Chr3 | CDS | 11091825 | 11092216 | 11091825 | ID=MsG0380012118.01.T01:cds;Parent=MsG0380012118.01.T01 |
| Chr3 | CDS | 11092509 | 11092614 | 11092509 | ID=MsG0380012118.01.T01:cds;Parent=MsG0380012118.01.T01 |
| Chr3 | three_prime_UTR | 11092615 | 11093205 | 11092615 | ID=MsG0380012118.01.T01:three_prime_utr;Parent=MsG0380012118.01.T01 |
| Gene Sequence |
| Protein sequence |
