AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040654.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040654.01.T01 MTR_7g095170 97.048 271 8 0 21 291 1 271 0.0 545
MsG0780040654.01.T01 MTR_1g071780 57.364 258 87 9 30 286 1 236 6.12e-83 249
MsG0780040654.01.T01 MTR_1g103500 37.586 290 108 13 60 285 6 286 4.82e-38 136
MsG0780040654.01.T01 MTR_3g108290 42.657 143 53 5 175 290 258 398 1.49e-21 94.0
MsG0780040654.01.T01 MTR_1g010140 42.373 118 46 3 193 290 204 319 5.07e-20 89.0
MsG0780040654.01.T01 MTR_2g102237 43.011 93 41 3 193 276 261 350 1.07e-17 82.8
MsG0780040654.01.T01 MTR_8g022950 56.522 46 20 0 244 289 39 84 1.59e-12 63.5
MsG0780040654.01.T01 MTR_2g102237 40.741 81 36 3 193 264 261 338 2.06e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040654.01.T01 AT3G22550 36.879 282 126 10 31 282 1 260 7.94e-43 148
MsG0780040654.01.T01 AT3G63210 39.068 279 132 12 31 287 1 263 1.04e-42 147
MsG0780040654.01.T01 AT5G11460 26.022 269 118 6 88 280 44 307 7.32e-21 91.3
MsG0780040654.01.T01 AT2G25690 43.434 99 41 5 202 290 218 311 1.17e-16 79.3
MsG0780040654.01.T01 AT2G25690 43.434 99 41 5 202 290 218 311 1.17e-16 79.3
MsG0780040654.01.T01 AT1G53885 44.118 68 38 0 222 289 20 87 2.80e-12 63.2
MsG0780040654.01.T01 AT1G53903 44.118 68 38 0 222 289 20 87 2.80e-12 63.2

Find 76 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTATCCCTTCTTTATT+TGG 0.094272 7:-80676518 MsG0780040654.01.T01:CDS
CCAAGTAATGACTCTTAATT+TGG 0.147550 7:-80675237 MsG0780040654.01.T01:three_prime_UTR
TAGGCAATATTCACCTAAAT+TGG 0.175155 7:+80674980 None:intergenic
CAAAAGATATATTTATTTAT+AGG 0.182500 7:-80675929 MsG0780040654.01.T01:intron
GTATTAGTATATTCCTTTAA+TGG 0.195196 7:-80675030 MsG0780040654.01.T01:three_prime_UTR
GTGAAATCTCTAATAAATTT+TGG 0.209187 7:+80676491 None:intergenic
TGTTTATACATATCCATTAA+AGG 0.223179 7:+80675017 None:intergenic
CTGTGATCAGCCATTAAATT+TGG 0.239971 7:+80676578 None:intergenic
ACTCTTAATTTGGTTGCTTC+TGG 0.254056 7:-80675227 MsG0780040654.01.T01:three_prime_UTR
TCATGACTAGAGTGCATATT+TGG 0.272051 7:-80675531 MsG0780040654.01.T01:three_prime_UTR
GGCATTGGTCTTGCTCTTAT+AGG 0.291963 7:-80676317 MsG0780040654.01.T01:CDS
AACAATTCTAACTCATCTTA+TGG 0.293044 7:-80675999 MsG0780040654.01.T01:CDS
ATGTTATCCCCTTATGGTTT+TGG 0.298858 7:-80676401 MsG0780040654.01.T01:CDS
AGTGACCAAGCCAAATTTAA+TGG 0.303564 7:-80676588 MsG0780040654.01.T01:CDS
ACTAGAATGTTATCCCCTTA+TGG 0.303568 7:-80676407 MsG0780040654.01.T01:CDS
AGCTATATTCAATCCAATTT+AGG 0.313314 7:-80674993 MsG0780040654.01.T01:three_prime_UTR
TCGAATATATGAGTGGTTCT+TGG 0.324933 7:+80676062 None:intergenic
ATATGAGTGGTTCTTGGATT+AGG 0.342533 7:+80676068 None:intergenic
CCAAATTAAGAGTCATTACT+TGG 0.351609 7:+80675237 None:intergenic
CTCACTCAAAGAAAGAAGTT+TGG 0.359826 7:+80676133 None:intergenic
GTGCTGCCTATTGTAATAGA+TGG 0.368958 7:-80675100 MsG0780040654.01.T01:three_prime_UTR
GAATTGAATCATCATCCTTA+AGG 0.375491 7:+80676291 None:intergenic
GAGAGTGCTATTGTTATTGT+TGG 0.387582 7:+80676466 None:intergenic
TCGAAGAGAGTTGCTGTTCT+CGG 0.387932 7:-80676028 MsG0780040654.01.T01:CDS
CTGCTTCATCCTAAAACAAT+GGG 0.411662 7:+80675195 None:intergenic
CGGTCCCCATCTATTACAAT+AGG 0.427411 7:+80675094 None:intergenic
AATATAGGAGAGGGCAAAGT+TGG 0.433798 7:+80676200 None:intergenic
TGCTCTTATAGGTAACCTTA+AGG 0.442219 7:-80676306 MsG0780040654.01.T01:CDS
ACTTCTTTCTTTGAGTGAGA+TGG 0.446621 7:-80676129 MsG0780040654.01.T01:CDS
TTTGGTGAACCAAATAAAGA+AGG 0.452111 7:+80676509 None:intergenic
GTGGATAACCAAAACCATAA+GGG 0.454650 7:+80676393 None:intergenic
CACAGAGAAATGGTGTTAGA+TGG 0.461833 7:-80675669 MsG0780040654.01.T01:CDS
TAGTGTCAAGAATTGAAGTT+GGG 0.468986 7:+80676426 None:intergenic
AGTGGATAACCAAAACCATA+AGG 0.471666 7:+80676392 None:intergenic
TTTGTCTTTGAGCTCTCCAA+TGG 0.471999 7:-80675297 MsG0780040654.01.T01:three_prime_UTR
ATCAGCCATTAAATTTGGCT+TGG 0.474809 7:+80676583 None:intergenic
TCTTTGAGCTCTCCAATGGA+TGG 0.500336 7:-80675293 MsG0780040654.01.T01:three_prime_UTR
CAAATTCAGGAAGTGTGGTT+CGG 0.502735 7:-80675438 MsG0780040654.01.T01:three_prime_UTR
CTTTGTGAGAAATAATAAAC+CGG 0.505315 7:+80675074 None:intergenic
GACTCAAATGGAGAAAATAT+AGG 0.506068 7:+80676185 None:intergenic
TATACTTGTGTGATCTCTCA+TGG 0.508508 7:-80676092 MsG0780040654.01.T01:CDS
ATGGATATAGAGATAGAGAG+AGG 0.509290 7:-80675274 MsG0780040654.01.T01:three_prime_UTR
AGAATGCAGGCACAGAGAAA+TGG 0.509379 7:-80675679 MsG0780040654.01.T01:CDS
AGTACTAATGCTTATTCTTG+AGG 0.509882 7:-80675620 MsG0780040654.01.T01:three_prime_UTR
CTATCTCTATATCCATCCAT+TGG 0.510395 7:+80675281 None:intergenic
CTAGTGTCAAGAATTGAAGT+TGG 0.516669 7:+80676425 None:intergenic
TCTGCTTCATCCTAAAACAA+TGG 0.518966 7:+80675194 None:intergenic
AACAAAACATTCTCATCAAG+AGG 0.525566 7:-80676338 MsG0780040654.01.T01:CDS
AGTGCTATTGTTATTGTTGG+TGG 0.528231 7:+80676469 None:intergenic
CTATTGTAATAGATGGGGAC+CGG 0.534479 7:-80675093 MsG0780040654.01.T01:three_prime_UTR
TGGATATAGAGATAGAGAGA+GGG 0.541435 7:-80675273 MsG0780040654.01.T01:three_prime_UTR
TCATGAACTTATGATAATGA+TGG 0.543748 7:-80675122 MsG0780040654.01.T01:three_prime_UTR
ACATTCTCATCAAGAGGCAT+TGG 0.544252 7:-80676332 MsG0780040654.01.T01:CDS
TGCTGCCTATTGTAATAGAT+GGG 0.545908 7:-80675099 MsG0780040654.01.T01:three_prime_UTR
TAATACTTTACATGCAATGA+GGG 0.548605 7:+80675047 None:intergenic
TTCATCAAATTCAGGAAGTG+TGG 0.554076 7:-80675443 MsG0780040654.01.T01:three_prime_UTR
TTGGTGAACCAAATAAAGAA+GGG 0.578160 7:+80676510 None:intergenic
TCCTACTGAAGTGAGGTGCT+CGG 0.586817 7:-80678372 MsG0780040654.01.T01:intron
ACTGATTACTTGTAAGAGAG+TGG 0.588863 7:+80678394 None:intergenic
CTTTCTGCAGTAGAGAATGC+AGG 0.590215 7:-80675692 MsG0780040654.01.T01:CDS
CTAGTCATGATATCATAATG+AGG 0.592164 7:+80675544 None:intergenic
AATGGAGAAAATATAGGAGA+GGG 0.592606 7:+80676191 None:intergenic
TGGATAACCAAAACCATAAG+GGG 0.594533 7:+80676394 None:intergenic
CTAATACTTTACATGCAATG+AGG 0.614466 7:+80675046 None:intergenic
AAATGGAGAAAATATAGGAG+AGG 0.628734 7:+80676190 None:intergenic
AATTCTGTTGAACAAAACAA+AGG 0.636708 7:-80676260 MsG0780040654.01.T01:CDS
GCTTCATCCTAAAACAATGG+GGG 0.637850 7:+80675197 None:intergenic
ACCGAGCACCTCACTTCAGT+AGG 0.648201 7:+80678371 None:intergenic
TGCTTCATCCTAAAACAATG+GGG 0.650681 7:+80675196 None:intergenic
CTTCATCCTAAAACAATGGG+GGG 0.654680 7:+80675198 None:intergenic
GAGTGAGATGGAGCTTTGTG+AGG 0.659407 7:-80676117 MsG0780040654.01.T01:CDS
GCAATTATCGAATATATGAG+TGG 0.666245 7:+80676055 None:intergenic
TAATCAGTCCTACTGAAGTG+AGG 0.684267 7:-80678379 MsG0780040654.01.T01:CDS
AATACTTTACATGCAATGAG+GGG 0.699012 7:+80675048 None:intergenic
GCTGCCTATTGTAATAGATG+GGG 0.711250 7:-80675098 MsG0780040654.01.T01:three_prime_UTR
GAGTCGCTTAATGTGGTACG+CGG 0.728727 7:-80678420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTAATGTGATATTA+TGG - Chr7:80678270-80678289 MsG0780040654.01.T01:intron 10.0%
!! CAAAAGATATATTTATTTAT+AGG - Chr7:80677298-80677317 MsG0780040654.01.T01:intron 10.0%
!!! AATATCACATTAATTTTTTT+AGG + Chr7:80678269-80678288 None:intergenic 10.0%
!!! TCATATTAAATTTTTGTATT+TGG + Chr7:80675783-80675802 None:intergenic 10.0%
!! AATATGATATCAAATTCTAT+TGG - Chr7:80675796-80675815 MsG0780040654.01.T01:intron 15.0%
!! ATTAATATGACTAAACAAAA+AGG + Chr7:80674913-80674932 None:intergenic 15.0%
!! TATTACACTTAATTCTATTA+TGG - Chr7:80675600-80675619 MsG0780040654.01.T01:three_prime_UTR 15.0%
!! TTATTACACTTATTCTATTA+TGG - Chr7:80675464-80675483 MsG0780040654.01.T01:three_prime_UTR 15.0%
!!! CTTAATGTAAAATAGTTTTA+TGG - Chr7:80678317-80678336 MsG0780040654.01.T01:intron 15.0%
!!! TCATATAACTAGATTTTTAA+TGG - Chr7:80677458-80677477 MsG0780040654.01.T01:intron 15.0%
!!! TTTATTTCTATTTTTCCTTT+TGG - Chr7:80677893-80677912 MsG0780040654.01.T01:intron 15.0%
!!! TTTTCTTTCTATTATATATG+TGG - Chr7:80675886-80675905 MsG0780040654.01.T01:intron 15.0%
!! CTATAATAAGTGAAATTCTT+CGG - Chr7:80675725-80675744 MsG0780040654.01.T01:intron 20.0%
!! GATAAATCAAAGTGATTTAT+TGG - Chr7:80676438-80676457 MsG0780040654.01.T01:CDS 20.0%
!! GTATTAGTATATTCCTTTAA+TGG - Chr7:80678197-80678216 MsG0780040654.01.T01:intron 20.0%
!! TAAACAAAAAGGAATGAATA+CGG + Chr7:80674902-80674921 None:intergenic 20.0%
!! TCTAACATTGAATAACAAAA+AGG - Chr7:80675691-80675710 MsG0780040654.01.T01:CDS 20.0%
!! TGAGTATTTAAATGAGTTAA+GGG - Chr7:80675123-80675142 MsG0780040654.01.T01:three_prime_UTR 20.0%
!! TGTTTATACATATCCATTAA+AGG + Chr7:80678213-80678232 None:intergenic 20.0%
!! TTGAGTATTTAAATGAGTTA+AGG - Chr7:80675122-80675141 MsG0780040654.01.T01:three_prime_UTR 20.0%
!!! ATTTTGTTGTCATAAAAAAG+TGG + Chr7:80676856-80676875 None:intergenic 20.0%
!!! GTGAAATCTCTAATAAATTT+TGG + Chr7:80676739-80676758 None:intergenic 20.0%
!!! TTAAAGTTTTCATCAAATTC+AGG - Chr7:80677776-80677795 MsG0780040654.01.T01:intron 20.0%
!!! TTTAGCACAATTTTGATTAT+TGG + Chr7:80676689-80676708 None:intergenic 20.0%
!!! TTTGATTTATCATCTATTCA+AGG + Chr7:80676429-80676448 None:intergenic 20.0%
!!! TTTTTTGTTTTGTTTTTGAC+AGG + Chr7:80675336-80675355 None:intergenic 20.0%
! AAAACTATCCCTTCTTTATT+TGG - Chr7:80676709-80676728 MsG0780040654.01.T01:intron 25.0%
! AACAATTCTAACTCATCTTA+TGG - Chr7:80677228-80677247 MsG0780040654.01.T01:intron 25.0%
! AAGTACATAAACATTCCAAA+AGG - Chr7:80676386-80676405 MsG0780040654.01.T01:CDS 25.0%
! AATTCTGTTGAACAAAACAA+AGG - Chr7:80676967-80676986 MsG0780040654.01.T01:intron 25.0%
! AGCTATATTCAATCCAATTT+AGG - Chr7:80678234-80678253 MsG0780040654.01.T01:intron 25.0%
! ATAATCGATAGATGTAATCA+AGG - Chr7:80675192-80675211 MsG0780040654.01.T01:three_prime_UTR 25.0%
! CTTTGTGAGAAATAATAAAC+CGG + Chr7:80678156-80678175 None:intergenic 25.0%
! GTCATATTAATTACATGTAC+TGG - Chr7:80674922-80674941 MsG0780040654.01.T01:three_prime_UTR 25.0%
! TAATACTTTACATGCAATGA+GGG + Chr7:80678183-80678202 None:intergenic 25.0%
! TGAATTTACCTTTGCAAAAT+CGG + Chr7:80675759-80675778 None:intergenic 25.0%
!! TCATGAACTTATGATAATGA+TGG - Chr7:80678105-80678124 MsG0780040654.01.T01:intron 25.0%
!! TGCAGATGATTTTTCTTTTT+GGG - Chr7:80676581-80676600 MsG0780040654.01.T01:CDS 25.0%
!!! AACAAAGGAAATGTTTTGTT+TGG - Chr7:80676982-80677001 MsG0780040654.01.T01:intron 25.0%
!!! ATTTTGTGTATCTTTGGTTT+TGG + Chr7:80677073-80677092 None:intergenic 25.0%
!!! TATAATCTGTTTCTGATCAA+TGG - Chr7:80676236-80676255 MsG0780040654.01.T01:CDS 25.0%
!!! TATTTTTGTTGCAGTTGATT+TGG - Chr7:80675021-80675040 MsG0780040654.01.T01:three_prime_UTR 25.0%
!!! TTCTATTTTTCCTTTTGGAA+GGG - Chr7:80677898-80677917 MsG0780040654.01.T01:intron 25.0%
!!! TTTCTATTTTTCCTTTTGGA+AGG - Chr7:80677897-80677916 MsG0780040654.01.T01:intron 25.0%
!!! TTTGGAATTTTGTGTATCTT+TGG + Chr7:80677079-80677098 None:intergenic 25.0%
AAATGGAGAAAATATAGGAG+AGG + Chr7:80677040-80677059 None:intergenic 30.0%
AACAAAAAAACCCTTCCAAA+AGG + Chr7:80677911-80677930 None:intergenic 30.0%
AACAAAACATTCTCATCAAG+AGG - Chr7:80676889-80676908 MsG0780040654.01.T01:intron 30.0%
AATACTTTACATGCAATGAG+GGG + Chr7:80678182-80678201 None:intergenic 30.0%
AATGGAGAAAATATAGGAGA+GGG + Chr7:80677039-80677058 None:intergenic 30.0%
AGACTTGTGTTAATATATGC+AGG + Chr7:80675643-80675662 None:intergenic 30.0%
AGTACTAATGCTTATTCTTG+AGG - Chr7:80677607-80677626 MsG0780040654.01.T01:intron 30.0%
CCAAATTAAGAGTCATTACT+TGG + Chr7:80677993-80678012 None:intergenic 30.0%
CCAAGTAATGACTCTTAATT+TGG - Chr7:80677990-80678009 MsG0780040654.01.T01:intron 30.0%
CTAATACTTTACATGCAATG+AGG + Chr7:80678184-80678203 None:intergenic 30.0%
CTAGTCATGATATCATAATG+AGG + Chr7:80677686-80677705 None:intergenic 30.0%
GAATTGAATCATCATCCTTA+AGG + Chr7:80676939-80676958 None:intergenic 30.0%
GACTCAAATGGAGAAAATAT+AGG + Chr7:80677045-80677064 None:intergenic 30.0%
GCAATTATCGAATATATGAG+TGG + Chr7:80677175-80677194 None:intergenic 30.0%
TAGGCAATATTCACCTAAAT+TGG + Chr7:80678250-80678269 None:intergenic 30.0%
TAGTGTCAAGAATTGAAGTT+GGG + Chr7:80676804-80676823 None:intergenic 30.0%
TATGCCAGTTAAGTGTTAAA+TGG + Chr7:80675991-80676010 None:intergenic 30.0%
TATTAACACAAGTCTCACAT+TGG - Chr7:80675648-80675667 MsG0780040654.01.T01:CDS 30.0%
TCTTCCATTTAACACTTAAC+TGG - Chr7:80675984-80676003 MsG0780040654.01.T01:CDS 30.0%
TTAAATGGAAGAGAAGCAAA+AGG + Chr7:80675976-80675995 None:intergenic 30.0%
TTGGTGAACCAAATAAAGAA+GGG + Chr7:80676720-80676739 None:intergenic 30.0%
TTTGGTGAACCAAATAAAGA+AGG + Chr7:80676721-80676740 None:intergenic 30.0%
! AATTACATGTACTGGTATAG+TGG - Chr7:80674930-80674949 MsG0780040654.01.T01:three_prime_UTR 30.0%
! AGTGCATTTTAGATTAATCG+TGG + Chr7:80677821-80677840 None:intergenic 30.0%
! GTGCAGATGATTTTTCTTTT+TGG - Chr7:80676580-80676599 MsG0780040654.01.T01:CDS 30.0%
! TGCAACTGTTTAAAAAGCAT+TGG + Chr7:80676076-80676095 None:intergenic 30.0%
!! CTTGATGAGAATGTTTTGTT+TGG + Chr7:80676889-80676908 None:intergenic 30.0%
!! GATGAGTTAGAATTGTTTTG+TGG + Chr7:80677225-80677244 None:intergenic 30.0%
!! TGTTTAAAAAGCATTGGTGA+GGG + Chr7:80676070-80676089 None:intergenic 30.0%
!!! ATGTTTTGTTTGGAACAGTT+TGG + Chr7:80676879-80676898 None:intergenic 30.0%
ACTAGAATGTTATCCCCTTA+TGG - Chr7:80676820-80676839 MsG0780040654.01.T01:intron 35.0%
ACTGATTACTTGTAAGAGAG+TGG + Chr7:80674836-80674855 None:intergenic 35.0%
ACTTCTTTCTTTGAGTGAGA+TGG - Chr7:80677098-80677117 MsG0780040654.01.T01:intron 35.0%
AGTGACCAAGCCAAATTTAA+TGG - Chr7:80676639-80676658 MsG0780040654.01.T01:CDS 35.0%
AGTGGATAACCAAAACCATA+AGG + Chr7:80676838-80676857 None:intergenic 35.0%
ATATGAGTGGTTCTTGGATT+AGG + Chr7:80677162-80677181 None:intergenic 35.0%
ATCAGCCATTAAATTTGGCT+TGG + Chr7:80676647-80676666 None:intergenic 35.0%
ATGGATATAGAGATAGAGAG+AGG - Chr7:80677953-80677972 MsG0780040654.01.T01:intron 35.0%
CAAAATAGCTAGAGACTAGA+GGG + Chr7:80676479-80676498 None:intergenic 35.0%
CCAAAAGGCTTGACTATTAT+AGG - Chr7:80676401-80676420 MsG0780040654.01.T01:CDS 35.0%
CTAGTGTCAAGAATTGAAGT+TGG + Chr7:80676805-80676824 None:intergenic 35.0%
CTATCTCTATATCCATCCAT+TGG + Chr7:80677949-80677968 None:intergenic 35.0%
CTCACTCAAAGAAAGAAGTT+TGG + Chr7:80677097-80677116 None:intergenic 35.0%
CTGCTTCATCCTAAAACAAT+GGG + Chr7:80678035-80678054 None:intergenic 35.0%
CTGTGATCAGCCATTAAATT+TGG + Chr7:80676652-80676671 None:intergenic 35.0%
GTAACAAAGAAGAGCTAGTT+AGG - Chr7:80676139-80676158 MsG0780040654.01.T01:CDS 35.0%
GTGGATAACCAAAACCATAA+GGG + Chr7:80676837-80676856 None:intergenic 35.0%
TAAACAGTTGCAAACTTTGC+AGG - Chr7:80676084-80676103 MsG0780040654.01.T01:CDS 35.0%
TATACTTGTGTGATCTCTCA+TGG - Chr7:80677135-80677154 MsG0780040654.01.T01:intron 35.0%
TCATGACTAGAGTGCATATT+TGG - Chr7:80677696-80677715 MsG0780040654.01.T01:intron 35.0%
TCGAATATATGAGTGGTTCT+TGG + Chr7:80677168-80677187 None:intergenic 35.0%
TCGTGTGCATGAAAATCAAA+CGG + Chr7:80675951-80675970 None:intergenic 35.0%
TCTGCTTCATCCTAAAACAA+TGG + Chr7:80678036-80678055 None:intergenic 35.0%
TGCTCTTATAGGTAACCTTA+AGG - Chr7:80676921-80676940 MsG0780040654.01.T01:intron 35.0%
TGCTGCCTATTGTAATAGAT+GGG - Chr7:80678128-80678147 MsG0780040654.01.T01:intron 35.0%
TGCTTCATCCTAAAACAATG+GGG + Chr7:80678034-80678053 None:intergenic 35.0%
TGGATAACCAAAACCATAAG+GGG + Chr7:80676836-80676855 None:intergenic 35.0%
TGGATATAGAGATAGAGAGA+GGG - Chr7:80677954-80677973 MsG0780040654.01.T01:intron 35.0%
TTCATCAAATTCAGGAAGTG+TGG - Chr7:80677784-80677803 MsG0780040654.01.T01:intron 35.0%
! ACTCTTAATTTGGTTGCTTC+TGG - Chr7:80678000-80678019 MsG0780040654.01.T01:intron 35.0%
! AGTGCTATTGTTATTGTTGG+TGG + Chr7:80676761-80676780 None:intergenic 35.0%
! AGTTTGATTGTGTTTTGCAG+AGG - Chr7:80677504-80677523 MsG0780040654.01.T01:intron 35.0%
! ATGTTATCCCCTTATGGTTT+TGG - Chr7:80676826-80676845 MsG0780040654.01.T01:intron 35.0%
! CCTATAATAGTCAAGCCTTT+TGG + Chr7:80676404-80676423 None:intergenic 35.0%
!! AAGCTTTGAACATAGGAGTT+AGG + Chr7:80676047-80676066 None:intergenic 35.0%
!! CTCTAGTCTCTAGCTATTTT+GGG - Chr7:80676478-80676497 MsG0780040654.01.T01:CDS 35.0%
!! CTGTTTAAAAAGCATTGGTG+AGG + Chr7:80676071-80676090 None:intergenic 35.0%
!! CTTACAAACCGATTTTGCAA+AGG - Chr7:80675748-80675767 MsG0780040654.01.T01:intron 35.0%
!! GAGAGTGCTATTGTTATTGT+TGG + Chr7:80676764-80676783 None:intergenic 35.0%
!!! GTTTTGGTTTGAGACTCAAA+TGG + Chr7:80677057-80677076 None:intergenic 35.0%
AATATAGGAGAGGGCAAAGT+TGG + Chr7:80677030-80677049 None:intergenic 40.0%
CCAAAATAGCTAGAGACTAG+AGG + Chr7:80676480-80676499 None:intergenic 40.0%
CTATTGTAATAGATGGGGAC+CGG - Chr7:80678134-80678153 MsG0780040654.01.T01:intron 40.0%
CTTCATCCTAAAACAATGGG+GGG + Chr7:80678032-80678051 None:intergenic 40.0%
GCTGCCTATTGTAATAGATG+GGG - Chr7:80678129-80678148 MsG0780040654.01.T01:intron 40.0%
GCTTCATCCTAAAACAATGG+GGG + Chr7:80678033-80678052 None:intergenic 40.0%
GTGCTGCCTATTGTAATAGA+TGG - Chr7:80678127-80678146 MsG0780040654.01.T01:intron 40.0%
TAATCAGTCCTACTGAAGTG+AGG - Chr7:80674848-80674867 MsG0780040654.01.T01:three_prime_UTR 40.0%
TTTGTCTTTGAGCTCTCCAA+TGG - Chr7:80677930-80677949 MsG0780040654.01.T01:intron 40.0%
! ACATTCTCATCAAGAGGCAT+TGG - Chr7:80676895-80676914 MsG0780040654.01.T01:intron 40.0%
! CAAATTCAGGAAGTGTGGTT+CGG - Chr7:80677789-80677808 MsG0780040654.01.T01:intron 40.0%
! CACAGAGAAATGGTGTTAGA+TGG - Chr7:80677558-80677577 MsG0780040654.01.T01:intron 40.0%
! CCTCTAGTCTCTAGCTATTT+TGG - Chr7:80676477-80676496 MsG0780040654.01.T01:CDS 40.0%
! TTTTTGCCCCCCATTGTTTT+AGG - Chr7:80678023-80678042 MsG0780040654.01.T01:intron 40.0%
ACATAGGAGTTAGGAGAGAG+AGG + Chr7:80676038-80676057 None:intergenic 45.0%
AGAATGCAGGCACAGAGAAA+TGG - Chr7:80677548-80677567 MsG0780040654.01.T01:intron 45.0%
CATAGGAGTTAGGAGAGAGA+GGG + Chr7:80676037-80676056 None:intergenic 45.0%
CGGTCCCCATCTATTACAAT+AGG + Chr7:80678136-80678155 None:intergenic 45.0%
CTTTCTGCAGTAGAGAATGC+AGG - Chr7:80677535-80677554 MsG0780040654.01.T01:intron 45.0%
TCTTTGAGCTCTCCAATGGA+TGG - Chr7:80677934-80677953 MsG0780040654.01.T01:intron 45.0%
! TCGAAGAGAGTTGCTGTTCT+CGG - Chr7:80677199-80677218 MsG0780040654.01.T01:intron 45.0%
!! GGCATTGGTCTTGCTCTTAT+AGG - Chr7:80676910-80676929 MsG0780040654.01.T01:intron 45.0%
!! GTGAGGGAAGCTTTGAACAT+AGG + Chr7:80676054-80676073 None:intergenic 45.0%
! GAGTGAGATGGAGCTTTGTG+AGG - Chr7:80677110-80677129 MsG0780040654.01.T01:intron 50.0%
! TCCTACTGAAGTGAGGTGCT+CGG - Chr7:80674855-80674874 MsG0780040654.01.T01:three_prime_UTR 50.0%
ACCGAGCACCTCACTTCAGT+AGG + Chr7:80674859-80674878 None:intergenic 55.0%
GAGGGAGAGAGCGACGTGTT+TGG + Chr7:80676019-80676038 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 80674817 80678432 80674817 ID=MsG0780040654.01;Name=MsG0780040654.01
Chr7 mRNA 80674817 80678432 80674817 ID=MsG0780040654.01.T01;Parent=MsG0780040654.01;Name=MsG0780040654.01.T01;_AED=0.19;_eAED=0.19;_QI=0|0.5|0.66|0.66|0.5|0.66|3|827|291
Chr7 exon 80674817 80675725 80674817 ID=MsG0780040654.01.T01:exon:17197;Parent=MsG0780040654.01.T01
Chr7 exon 80675930 80676663 80675930 ID=MsG0780040654.01.T01:exon:17196;Parent=MsG0780040654.01.T01
Chr7 exon 80678373 80678432 80678373 ID=MsG0780040654.01.T01:exon:17195;Parent=MsG0780040654.01.T01
Chr7 CDS 80678373 80678432 80678373 ID=MsG0780040654.01.T01:cds;Parent=MsG0780040654.01.T01
Chr7 CDS 80675930 80676663 80675930 ID=MsG0780040654.01.T01:cds;Parent=MsG0780040654.01.T01
Chr7 CDS 80675644 80675725 80675644 ID=MsG0780040654.01.T01:cds;Parent=MsG0780040654.01.T01
Chr7 three_prime_UTR 80674817 80675643 80674817 ID=MsG0780040654.01.T01:three_prime_utr;Parent=MsG0780040654.01.T01
Gene Sequence

>MsG0780040654.01.T01

ATGTGGTACGCGGCTTCCACTCTCTTACAAGTAATCAGTCCTACTGAAGTGAGGTGCTCGATGATTTTTCTTTTTGGGAGAGTACTTATGCTTCTAAGAAATAGATCAAGAGCAGTGACCAAGCCAAATTTAATGGCTGATCACAGTTCTCAACAATCTTCCAATAATCAAAATTGTGCTAAAAAAACTATCCCTTCTTTATTTGGTTCACCAAAATTTATTAGAGATTTCACCACCAACAATAACAATAGCACTCTCTCAGAAGCTTTGAAAAGCCCAACTTCAATTCTTGACACTAGAATGTTATCCCCTTATGGTTTTGGTTATCCACTTTTTTATGACAACAAAATCCAAACTGTTCCAAACAAAACATTCTCATCAAGAGGCATTGGTCTTGCTCTTATAGGTAACCTTAAGGATGATGATTCAATTCATGAGAATAATTCTGTTGAACAAAACAAAGGAAATGTTTTGTTTGGAACACAACTAAGAGTTAAAGTGCCAACTTTGCCCTCTCCTATATTTTCTCCATTTGAGTCTCAAACCAAAACCAAAGATACACAAAATTCCAAACTTCTTTCTTTGAGTGAGATGGAGCTTTGTGAGGAATATACTTGTGTGATCTCTCATGGACCTAATCCAAGAACCACTCATATATTCGATAATTGCGTTGTCGAAGAGAGTTGCTGTTCTCGGCCACAAAACAATTCTAACTCATCTTATGGAAATTTTCTTAGAGTTTGTTACACTTGCAAGAAACATCTTGAGCAGACAAAAGATATATTTATTTATAGAGGAGACAAAGCTTTCTGCAGTAGAGAATGCAGGCACAGAGAAATGGTGTTAGATGGTGTAGAAAGTTTAGAAGAATTTTGA
Protein sequence

>MsG0780040654.01.T01

MWYAASTLLQVISPTEVRCSMIFLFGRVLMLLRNRSRAVTKPNLMADHSSQQSSNNQNCAKKTIPSLFGSPKFIRDFTTNNNNSTLSEALKSPTSILDTRMLSPYGFGYPLFYDNKIQTVPNKTFSSRGIGLALIGNLKDDDSIHENNSVEQNKGNVLFGTQLRVKVPTLPSPIFSPFESQTKTKDTQNSKLLSLSEMELCEEYTCVISHGPNPRTTHIFDNCVVEESCCSRPQNNSNSSYGNFLRVCYTCKKHLEQTKDIFIYRGDKAFCSRECRHREMVLDGVESLEEF*