AlfalfaGEDB | MsG0780040700.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040700.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040700.01.T01	RHN48149.1	89	200	20	2	22	221	68	265	4.70E-127	379
MsG0780040700.01.T01	RHN48149.1	97.872	94	2	0	208	301	327	420	8.15E-55	194

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040700.01.T01	Q3EBR6	59.606	203	78	4	25	225	98	298	6.26E-80	254

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040700.01.T01	A0A396H4E6	89.000	200	20	2	22	221	68	265	2.25e-127	379

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047989.01	MsG0780040700.01	0.804093	2.548812e-49	1.302609e-46
MsG0080048191.01	MsG0780040700.01	0.827220	1.764116e-54	1.692327e-51
MsG0080048660.01	MsG0780040700.01	0.821271	4.411275e-53	3.572082e-50
MsG0080048727.01	MsG0780040700.01	0.836781	7.650339e-57	9.741577e-54
MsG0080048748.01	MsG0780040700.01	0.843395	1.438653e-58	2.248137e-55
MsG0080048773.01	MsG0780040700.01	0.875951	2.054275e-68	9.780602e-65
MsG0080048780.01	MsG0780040700.01	0.824347	8.480599e-54	7.491693e-51
MsG0080048801.01	MsG0780040700.01	0.838941	2.132182e-57	2.899826e-54
MsG0080048820.01	MsG0780040700.01	0.844745	6.251216e-59	1.019041e-55
MsG0080048845.01	MsG0780040700.01	0.877491	6.022576e-69	3.034420e-65

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040700.01.T01	MTR_7g096120	88.725	204	21	2	18	221	64	265	2.94e-130	380
MsG0780040700.01.T01	MTR_7g096120	97.872	94	2	0	208	301	327	420	8.58e-58	193
MsG0780040700.01.T01	MTR_7g096140	87.255	204	24	2	18	221	64	265	5.55e-129	375
MsG0780040700.01.T01	MTR_7g096140	97.872	94	2	0	208	301	327	420	3.75e-58	193
MsG0780040700.01.T01	MTR_4g077070	52.356	191	82	6	27	215	99	282	1.37e-61	204
MsG0780040700.01.T01	MTR_4g077070	52.632	95	41	3	208	301	352	443	8.35e-23	98.6
MsG0780040700.01.T01	MTR_1995s0010	97.849	93	2	0	208	300	131	223	5.12e-60	191
MsG0780040700.01.T01	MTR_1995s0010	74.648	71	16	2	151	221	1	69	5.42e-28	108
MsG0780040700.01.T01	MTR_2g015690	33.533	334	161	10	28	301	20	352	7.12e-46	160
MsG0780040700.01.T01	MTR_7g081645	28.655	342	165	11	28	301	75	405	1.05e-40	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040700.01.T01	AT2G30550	59.606	203	78	4	25	225	98	298	4.71e-82	255
MsG0780040700.01.T01	AT2G30550	60.638	94	34	2	208	301	358	448	2.01e-31	122
MsG0780040700.01.T01	AT2G30550	59.606	203	78	4	25	225	98	298	6.39e-81	254
MsG0780040700.01.T01	AT2G30550	60.638	94	34	2	208	301	358	448	7.23e-31	121
MsG0780040700.01.T01	AT1G06800	57.711	201	80	5	28	225	85	283	3.32e-78	245
MsG0780040700.01.T01	AT1G06800	59.574	94	35	2	208	301	343	433	1.74e-30	119
MsG0780040700.01.T01	AT1G06800	57.711	201	80	5	28	225	85	283	7.56e-77	243
MsG0780040700.01.T01	AT1G06800	59.574	94	35	2	208	301	343	433	6.58e-30	119
MsG0780040700.01.T01	AT1G51440	51.667	180	71	5	26	198	85	255	2.25e-58	196
MsG0780040700.01.T01	AT1G51440	55.319	94	40	2	208	301	343	434	2.99e-23	99.8

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Find 88 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAATGCATCATAAC+AGG	0.381110	7:-81345106	None:intergenic
AAATCCACGGTGAAGATGAT+TGG	0.395504	7:+81345013	MsG0780040700.01.T01:CDS
AAATGCATCATAACAGGCTT+GGG	0.461251	7:-81345100	None:intergenic
AACCGTTACTCATGTCGAAT+GGG	0.510098	7:+81345640	MsG0780040700.01.T01:CDS
AACGACGTTCGAGTAGAAGC+AGG	0.582473	7:+81345719	MsG0780040700.01.T01:CDS
AAGAAAGTGGATTCGGATTT+GGG	0.266472	7:-81344812	None:intergenic
AATCCACGGTGAAGATGATT+GGG	0.485607	7:+81345014	MsG0780040700.01.T01:CDS
ACCCATCGAGTATGTGCAAG+TGG	0.570224	7:-81346258	None:intergenic
ACCGATAGACAAACAAAAGA+CGG	0.593031	7:+81345757	MsG0780040700.01.T01:CDS
AGAGATTGATGCAGCCATGT+TGG	0.632676	7:-81344771	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAACAGGGTTAAATGTTA+GGG	+	Chr7:81345922-81345941	MsG0780040700.01.T01:intron	30.0%
CGAGATTTCTTAAAGAAATC+TGG	-	Chr7:81345258-81345277	None:intergenic	30.0%
GAAGTTAGTATTACGTTAAC+GGG	+	Chr7:81345853-81345872	MsG0780040700.01.T01:intron	30.0%
GATGAAGCAACACAAAAAAT+CGG	+	Chr7:81345339-81345358	MsG0780040700.01.T01:CDS	30.0%
GGTTAAATGTTAGGGAAAAA+TGG	+	Chr7:81345930-81345949	MsG0780040700.01.T01:intron	30.0%
GGTTCATAATAAGCATGATA+TGG	+	Chr7:81346054-81346073	MsG0780040700.01.T01:CDS	30.0%
GTAATACTAACTTCTTCATC+AGG	-	Chr7:81345847-81345866	None:intergenic	30.0%
TATCTTGGTAAAGAGGTTTA+AGG	-	Chr7:81345685-81345704	None:intergenic	30.0%
TCAAAAATGGAGAAATCTTG+TGG	-	Chr7:81346198-81346217	None:intergenic	30.0%
TCAGCATTAGGATTCAAAAA+TGG	-	Chr7:81346211-81346230	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	81344720	81346282	81344720	ID=MsG0780040700.01;Name=MsG0780040700.01
Chr7	mRNA	81344720	81346282	81344720	ID=MsG0780040700.01.T01;Parent=MsG0780040700.01;Name=MsG0780040700.01.T01;_AED=0.00;_eAED=0.00;_QI=193\|0.5\|0.33\|1\|1\|1\|3\|0\|301
Chr7	exon	81344720	81345360	81344720	ID=MsG0780040700.01.T01:exon:18861;Parent=MsG0780040700.01.T01
Chr7	exon	81345609	81345778	81345609	ID=MsG0780040700.01.T01:exon:18862;Parent=MsG0780040700.01.T01
Chr7	exon	81345995	81346282	81345995	ID=MsG0780040700.01.T01:exon:18863;Parent=MsG0780040700.01.T01
Chr7	five_prime_UTR	81344720	81344912	81344720	ID=MsG0780040700.01.T01:five_prime_utr;Parent=MsG0780040700.01.T01
Chr7	CDS	81344913	81345360	81344913	ID=MsG0780040700.01.T01:cds;Parent=MsG0780040700.01.T01
Chr7	CDS	81345609	81345778	81345609	ID=MsG0780040700.01.T01:cds;Parent=MsG0780040700.01.T01
Chr7	CDS	81345995	81346282	81345995	ID=MsG0780040700.01.T01:cds;Parent=MsG0780040700.01.T01

Gene Sequence

>MsG0780040700.01.T01

ATGTTCCGCATCCCAAATCAACACCATGACACAACTCCAATCACAAAACACAAAACAATCATCAAACTAACCGAACTTCCCATAGAAAAAGCATGGCGAAAAATCCACGGTGAAGATGATTGGGTTGGACTTCTAGATCCAATGGACCCAATAATGCGATCCGAACTAATCCGTTACGGAGAAAAGTCCCAAGCCTGTTATGATGCATTTGATTTTGATCCATATTCAAAATATTGTGGTAGTTGCAAACACCCACACCTTGAATTTTTCCCATCGTTAGATCTTCCACACATAGGGTATGACGTAACACGCTACCTCTATGCCACAGCAAATGTTAACGTCCCAGATTTCTTTAAGAAATCTCGATGGCCAGATAAATATTGGAGCGAACACGCGAATTGGATGGGATACATAGCCGTTTCAAACGATGAAGCAACACAAAAAATCGGTCGCAGAGACATTGTTATTGCTTGGCGAGGAACCGTTACTCATGTCGAATGGGTAGCCAATCTTCAAAATTACCTTAAACCTCTTTACCAAGATATTCCTTGTCCGGACAACGACGTTCGAGTAGAAGCAGGTTTTCTCGATATTACACCGATAGACAAACAAAAGACGGGTGGGAACGTGAAATTTAAAGGGAGATTGGAGAAACATTTAGGGGTTAAGATTTTGAGGGTTCATAATAAGCATGATATGGTGCCAAAGTCACCAGGGTTTCTTATTAATGAGAAATCGCCTGAGTGGTTATTAAAGTTTGCTGAGGATATTGATATTCCATGGTGTTACACTCATGTTGGAGTTGAGTTAGAGTTGGACCACAAGATTTCTCCATTTTTGAATCCTAATGCTGATGCTGCATCTGCTCATAACTTGGAGGCCCACTTGCACATACTCGATGGGTAA

Protein sequence

>MsG0780040700.01.T01

MFRIPNQHHDTTPITKHKTIIKLTELPIEKAWRKIHGEDDWVGLLDPMDPIMRSELIRYGEKSQACYDAFDFDPYSKYCGSCKHPHLEFFPSLDLPHIGYDVTRYLYATANVNVPDFFKKSRWPDKYWSEHANWMGYIAVSNDEATQKIGRRDIVIAWRGTVTHVEWVANLQNYLKPLYQDIPCPDNDVRVEAGFLDITPIDKQKTGGNVKFKGRLEKHLGVKILRVHNKHDMVPKSPGFLINEKSPEWLLKFAEDIDIPWCYTHVGVELELDHKISPFLNPNADAASAHNLEAHLHILDG*