Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045879.01.T01 | XP_039688861.1 | 97.885 | 331 | 6 | 1 | 1 | 330 | 1 | 331 | 0 | 672 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045879.01.T01 | A0A396IJ55 | 97.885 | 331 | 6 | 1 | 1 | 330 | 1 | 331 | 0.0 | 672 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047815.01 | MsG0880045879.01 | 0.858543 | 7.666372e-63 | 1.963365e-59 |
| MsG0080048258.01 | MsG0880045879.01 | 0.810596 | 1.065460e-50 | 6.449618e-48 |
| MsG0080048797.01 | MsG0880045879.01 | 0.834598 | 2.732546e-56 | 3.258344e-53 |
| MsG0180000984.01 | MsG0880045879.01 | 0.845385 | 4.197985e-59 | 6.983928e-56 |
| MsG0180001288.01 | MsG0880045879.01 | 0.815032 | 1.137638e-51 | 7.757077e-49 |
| MsG0180001293.01 | MsG0880045879.01 | 0.824680 | 7.078657e-54 | 6.314738e-51 |
| MsG0180001719.01 | MsG0880045879.01 | 0.855411 | 6.423452e-62 | 1.481776e-58 |
| MsG0180002134.01 | MsG0880045879.01 | 0.815396 | 9.446609e-52 | 6.505379e-49 |
| MsG0180002135.01 | MsG0880045879.01 | 0.810317 | 1.224071e-50 | 7.354904e-48 |
| MsG0180002397.01 | MsG0880045879.01 | 0.803944 | 2.737190e-49 | 1.393586e-46 |
| MsG0180002428.01 | MsG0880045879.01 | 0.818352 | 2.049544e-52 | 1.530658e-49 |
| MsG0880044139.01 | MsG0880045879.01 | 0.812611 | 3.885200e-51 | 2.481588e-48 |
| MsG0880044437.01 | MsG0880045879.01 | 0.844501 | 7.269547e-59 | 1.175973e-55 |
| MsG0880045356.01 | MsG0880045879.01 | 0.824232 | 9.025064e-54 | 7.947193e-51 |
| MsG0880045439.01 | MsG0880045879.01 | 0.803598 | 3.229101e-49 | 1.629462e-46 |
| MsG0880045612.01 | MsG0880045879.01 | 0.839184 | 1.843781e-57 | 2.526430e-54 |
| MsG0880045647.01 | MsG0880045879.01 | 0.873249 | 1.701750e-67 | 7.334664e-64 |
| MsG0880045879.01 | MsG0880046433.01 | 0.823035 | 1.719968e-53 | 1.464314e-50 |
| MsG0880045879.01 | MsG0880046529.01 | 0.827458 | 1.546908e-54 | 1.494356e-51 |
| MsG0880045879.01 | MsG0880046904.01 | 0.860276 | 2.312125e-63 | 6.284796e-60 |
| MsG0880045879.01 | MsG0880046905.01 | 0.826623 | 2.450332e-54 | 2.310092e-51 |
| MsG0880045879.01 | MsG0880046993.01 | 0.805434 | 1.337432e-49 | 7.074976e-47 |
| MsG0880045879.01 | MsG0880047414.01 | 0.827949 | 1.179554e-54 | 1.155832e-51 |
| MsG0880045879.01 | MsG0880047649.01 | 0.842006 | 3.365101e-58 | 5.032964e-55 |
| MsG0180003857.01 | MsG0880045879.01 | 0.826889 | 2.117665e-54 | 2.011860e-51 |
| MsG0180003905.01 | MsG0880045879.01 | 0.815984 | 6.984993e-52 | 4.888429e-49 |
| MsG0180003983.01 | MsG0880045879.01 | 0.836326 | 9.994059e-57 | 1.255400e-53 |
| MsG0180004120.01 | MsG0880045879.01 | 0.847526 | 1.093643e-59 | 1.949562e-56 |
| MsG0180004185.01 | MsG0880045879.01 | 0.810859 | 9.348461e-51 | 5.699055e-48 |
| MsG0180004299.01 | MsG0880045879.01 | 0.802792 | 4.741919e-49 | 2.343983e-46 |
| MsG0180004538.01 | MsG0880045879.01 | 0.825042 | 5.814118e-54 | 5.240476e-51 |
| MsG0180004583.01 | MsG0880045879.01 | 0.862752 | 4.055720e-64 | 1.201013e-60 |
| MsG0180004828.01 | MsG0880045879.01 | 0.852468 | 4.526791e-61 | 9.467754e-58 |
| MsG0180005655.01 | MsG0880045879.01 | 0.853927 | 1.728914e-61 | 3.796713e-58 |
| MsG0180005678.01 | MsG0880045879.01 | 0.822971 | 1.780239e-53 | 1.512796e-50 |
| MsG0280006378.01 | MsG0880045879.01 | 0.801702 | 7.949592e-49 | 3.821684e-46 |
| MsG0780040459.01 | MsG0880045879.01 | 0.831197 | 1.913590e-55 | 2.061692e-52 |
| MsG0780040554.01 | MsG0880045879.01 | 0.810006 | 1.428281e-50 | 8.513010e-48 |
| MsG0780040641.01 | MsG0880045879.01 | 0.839927 | 1.182479e-57 | 1.657868e-54 |
| MsG0780040671.01 | MsG0880045879.01 | 0.803602 | 3.223568e-49 | 1.626807e-46 |
| MsG0780040786.01 | MsG0880045879.01 | 0.801198 | 1.008044e-48 | 4.785020e-46 |
| MsG0780040830.01 | MsG0880045879.01 | 0.824697 | 7.014914e-54 | 6.260790e-51 |
| MsG0780040899.01 | MsG0880045879.01 | 0.834939 | 2.241782e-56 | 2.700731e-53 |
| MsG0780041008.01 | MsG0880045879.01 | 0.811764 | 5.947119e-51 | 3.713085e-48 |
| MsG0780041219.01 | MsG0880045879.01 | 0.806761 | 7.029830e-50 | 3.847252e-47 |
| MsG0780041273.01 | MsG0880045879.01 | 0.838131 | 3.450039e-57 | 4.577585e-54 |
| MsG0780041359.01 | MsG0880045879.01 | 0.821270 | 4.414511e-53 | 3.574507e-50 |
| MsG0780041546.01 | MsG0880045879.01 | 0.805800 | 1.120697e-49 | 5.984561e-47 |
| MsG0880043684.01 | MsG0880045879.01 | 0.851559 | 8.201611e-61 | 1.666546e-57 |
| MsG0880043714.01 | MsG0880045879.01 | 0.830363 | 3.063752e-55 | 3.221008e-52 |
| MsG0880043920.01 | MsG0880045879.01 | 0.823939 | 1.057399e-53 | 9.234673e-51 |
| MsG0380012118.01 | MsG0880045879.01 | 0.832781 | 7.769223e-56 | 8.773247e-53 |
| MsG0380013540.01 | MsG0880045879.01 | 0.814925 | 1.201615e-51 | 8.168964e-49 |
| MsG0380014542.01 | MsG0880045879.01 | 0.869009 | 4.268360e-66 | 1.576592e-62 |
| MsG0380014544.01 | MsG0880045879.01 | 0.888369 | 6.275015e-73 | 4.848472e-69 |
| MsG0380014666.01 | MsG0880045879.01 | 0.826962 | 2.033977e-54 | 1.936581e-51 |
| MsG0380014807.01 | MsG0880045879.01 | 0.802028 | 6.811725e-49 | 3.302047e-46 |
| MsG0680031356.01 | MsG0880045879.01 | 0.805602 | 1.233385e-49 | 6.552621e-47 |
| MsG0480020057.01 | MsG0880045879.01 | 0.814486 | 1.503714e-51 | 1.010307e-48 |
| MsG0480020398.01 | MsG0880045879.01 | 0.858104 | 1.035881e-62 | 2.614295e-59 |
| MsG0480020856.01 | MsG0880045879.01 | 0.818805 | 1.618123e-52 | 1.223504e-49 |
| MsG0480020921.01 | MsG0880045879.01 | 0.801031 | 1.090486e-48 | 5.154947e-46 |
| MsG0480020937.01 | MsG0880045879.01 | 0.853769 | 1.919871e-61 | 4.194026e-58 |
| MsG0480021100.01 | MsG0880045879.01 | 0.869109 | 3.959327e-66 | 1.468164e-62 |
| MsG0480021301.01 | MsG0880045879.01 | 0.821010 | 5.068025e-53 | 4.074840e-50 |
| MsG0480021456.01 | MsG0880045879.01 | 0.820202 | 7.770464e-53 | 6.108365e-50 |
| MsG0480021486.01 | MsG0880045879.01 | 0.817645 | 2.961704e-52 | 2.169080e-49 |
| MsG0480021740.01 | MsG0880045879.01 | 0.820967 | 5.184431e-53 | 4.163342e-50 |
| MsG0480021773.01 | MsG0880045879.01 | 0.872121 | 4.056795e-67 | 1.677425e-63 |
| MsG0480021902.01 | MsG0880045879.01 | 0.875733 | 2.442013e-68 | 1.152928e-64 |
| MsG0480022307.01 | MsG0880045879.01 | 0.846657 | 1.892139e-59 | 3.280253e-56 |
| MsG0480022378.01 | MsG0880045879.01 | 0.851241 | 1.008709e-60 | 2.028793e-57 |
| MsG0480022682.01 | MsG0880045879.01 | 0.881496 | 2.287964e-70 | 1.343486e-66 |
| MsG0480022784.01 | MsG0880045879.01 | 0.837202 | 5.974693e-57 | 7.704475e-54 |
| MsG0480023003.01 | MsG0880045879.01 | 0.830103 | 3.545808e-55 | 3.699623e-52 |
| MsG0480023414.01 | MsG0880045879.01 | 0.814449 | 1.531959e-51 | 1.028233e-48 |
| MsG0480023424.01 | MsG0880045879.01 | 0.835727 | 1.418288e-56 | 1.749448e-53 |
| MsG0480023426.01 | MsG0880045879.01 | 0.859730 | 3.379427e-63 | 9.015247e-60 |
| MsG0480023626.01 | MsG0880045879.01 | 0.806600 | 7.603309e-50 | 4.143903e-47 |
| MsG0480023679.01 | MsG0880045879.01 | 0.814982 | 1.167614e-51 | 7.950286e-49 |
| MsG0480023706.01 | MsG0880045879.01 | 0.848403 | 6.267662e-60 | 1.148950e-56 |
| MsG0480023842.01 | MsG0880045879.01 | 0.829024 | 6.487258e-55 | 6.558600e-52 |
| MsG0480023913.01 | MsG0880045879.01 | 0.832275 | 1.037289e-55 | 1.153667e-52 |
| MsG0480024019.01 | MsG0880045879.01 | 0.859618 | 3.651355e-63 | 9.702554e-60 |
| MsG0580024276.01 | MsG0880045879.01 | 0.856837 | 2.455624e-62 | 5.937843e-59 |
| MsG0580024742.01 | MsG0880045879.01 | 0.804260 | 2.353102e-49 | 1.207675e-46 |
| MsG0580024773.01 | MsG0880045879.01 | 0.831870 | 1.306563e-55 | 1.436274e-52 |
| MsG0580025186.01 | MsG0880045879.01 | 0.811906 | 5.537026e-51 | 3.470118e-48 |
| MsG0580025504.01 | MsG0880045879.01 | 0.847732 | 9.596671e-60 | 1.721893e-56 |
| MsG0580025970.01 | MsG0880045879.01 | 0.849419 | 3.272386e-60 | 6.199478e-57 |
| MsG0380015090.01 | MsG0880045879.01 | 0.813323 | 2.713292e-51 | 1.766368e-48 |
| MsG0380015340.01 | MsG0880045879.01 | 0.849605 | 2.904815e-60 | 5.536556e-57 |
| MsG0380015656.01 | MsG0880045879.01 | 0.808968 | 2.386701e-50 | 1.383781e-47 |
| MsG0380015954.01 | MsG0880045879.01 | 0.817833 | 2.686470e-52 | 1.977772e-49 |
| MsG0380016027.01 | MsG0880045879.01 | 0.812853 | 3.440129e-51 | 2.211184e-48 |
| MsG0380017079.01 | MsG0880045879.01 | 0.807511 | 4.876961e-50 | 2.721650e-47 |
| MsG0380017128.01 | MsG0880045879.01 | 0.807057 | 6.087195e-50 | 3.357036e-47 |
| MsG0380017588.01 | MsG0880045879.01 | 0.803297 | 3.728178e-49 | 1.866674e-46 |
| MsG0380017605.01 | MsG0880045879.01 | 0.817830 | 2.690872e-52 | 1.980818e-49 |
| MsG0380017644.01 | MsG0880045879.01 | 0.806762 | 7.025993e-50 | 3.845292e-47 |
| MsG0380017696.01 | MsG0880045879.01 | 0.830089 | 3.573096e-55 | 3.726539e-52 |
| MsG0380017913.01 | MsG0880045879.01 | 0.825746 | 3.962060e-54 | 3.643351e-51 |
| MsG0380018055.01 | MsG0880045879.01 | 0.863131 | 3.098503e-64 | 9.293671e-61 |
| MsG0480018228.01 | MsG0880045879.01 | 0.850334 | 1.816106e-60 | 3.545326e-57 |
| MsG0580026343.01 | MsG0880045879.01 | 0.852201 | 5.393090e-61 | 1.118492e-57 |
| MsG0580028955.01 | MsG0880045879.01 | 0.869454 | 3.059588e-66 | 1.149110e-62 |
| MsG0580030141.01 | MsG0880045879.01 | 0.834768 | 2.476702e-56 | 2.967998e-53 |
| MsG0280006909.01 | MsG0880045879.01 | 0.803911 | 2.780515e-49 | 1.414457e-46 |
| MsG0280006924.01 | MsG0880045879.01 | 0.818009 | 2.450889e-52 | 1.812993e-49 |
| MsG0280007092.01 | MsG0880045879.01 | 0.812689 | 3.736409e-51 | 2.391479e-48 |
| MsG0280007408.01 | MsG0880045879.01 | 0.846215 | 2.498933e-59 | 4.269727e-56 |
| MsG0280007695.01 | MsG0880045879.01 | 0.824083 | 9.781436e-54 | 8.576703e-51 |
| MsG0280007919.01 | MsG0880045879.01 | 0.806674 | 7.335693e-50 | 4.005521e-47 |
| MsG0280009216.01 | MsG0880045879.01 | 0.827595 | 1.434356e-54 | 1.390916e-51 |
| MsG0280009866.01 | MsG0880045879.01 | 0.801029 | 1.091559e-48 | 5.159789e-46 |
| MsG0680035776.01 | MsG0880045879.01 | 0.802612 | 5.165911e-49 | 2.541754e-46 |
| MsG0680035792.01 | MsG0880045879.01 | 0.836095 | 1.143672e-56 | 1.426547e-53 |
| MsG0780036534.01 | MsG0880045879.01 | 0.820354 | 7.169513e-53 | 5.659727e-50 |
| MsG0780036553.01 | MsG0880045879.01 | 0.821453 | 4.004795e-53 | 3.259446e-50 |
| MsG0780038402.01 | MsG0880045879.01 | 0.811831 | 5.749010e-51 | 3.595825e-48 |
| MsG0780038647.01 | MsG0880045879.01 | 0.835638 | 1.493061e-56 | 1.836692e-53 |
| MsG0780038736.01 | MsG0880045879.01 | 0.880092 | 7.293963e-70 | 4.056477e-66 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045879.01.T01 | MTR_0154s0010 | 97.794 | 136 | 3 | 0 | 195 | 330 | 1 | 136 | 1.29e-95 | 280 |
| MsG0880045879.01.T01 | MTR_6g081930 | 49.693 | 326 | 124 | 8 | 12 | 329 | 1 | 294 | 2.19e-94 | 282 |
| MsG0880045879.01.T01 | MTR_4g094800 | 86.250 | 160 | 18 | 2 | 1 | 159 | 1 | 157 | 1.38e-93 | 276 |
| MsG0880045879.01.T01 | MTR_8g106580 | 51.258 | 318 | 133 | 5 | 12 | 329 | 1 | 296 | 1.45e-91 | 275 |
| MsG0880045879.01.T01 | MTR_2g101870 | 42.320 | 319 | 168 | 11 | 14 | 329 | 4 | 309 | 4.13e-70 | 221 |
| MsG0880045879.01.T01 | MTR_4g075730 | 43.769 | 329 | 162 | 10 | 10 | 329 | 4 | 318 | 2.50e-67 | 214 |
| MsG0880045879.01.T01 | MTR_3g037650 | 45.896 | 268 | 127 | 8 | 70 | 326 | 9 | 269 | 2.64e-62 | 199 |
| MsG0880045879.01.T01 | MTR_6g087880 | 40.615 | 325 | 169 | 9 | 12 | 330 | 1 | 307 | 3.03e-58 | 190 |
| MsG0880045879.01.T01 | MTR_4g075730 | 45.690 | 232 | 105 | 9 | 10 | 234 | 4 | 221 | 2.15e-38 | 136 |
| MsG0880045879.01.T01 | MTR_8g086610 | 39.785 | 186 | 99 | 3 | 146 | 329 | 105 | 279 | 3.46e-37 | 134 |
| MsG0880045879.01.T01 | MTR_3g033530 | 26.471 | 306 | 187 | 11 | 39 | 311 | 29 | 329 | 4.52e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045879.01.T01 | AT1G45688 | 52.174 | 345 | 129 | 8 | 12 | 327 | 1 | 338 | 3.48e-99 | 296 |
| MsG0880045879.01.T01 | AT5G42860 | 49.258 | 337 | 129 | 7 | 12 | 327 | 1 | 316 | 2.12e-94 | 283 |
| MsG0880045879.01.T01 | AT1G45688 | 50.199 | 251 | 94 | 7 | 12 | 244 | 1 | 238 | 1.17e-73 | 228 |
| MsG0880045879.01.T01 | AT2G41990 | 38.486 | 317 | 171 | 7 | 12 | 326 | 1 | 295 | 2.28e-50 | 169 |
| MsG0880045879.01.T01 | AT4G35170 | 35.714 | 308 | 176 | 7 | 25 | 327 | 7 | 297 | 5.19e-49 | 166 |
| MsG0880045879.01.T01 | AT3G24600 | 32.812 | 320 | 187 | 7 | 12 | 325 | 2 | 299 | 3.06e-37 | 135 |
| MsG0880045879.01.T01 | AT3G24605 | 30.263 | 304 | 187 | 7 | 10 | 311 | 1 | 281 | 5.68e-36 | 132 |
| MsG0880045879.01.T01 | AT3G08490 | 24.057 | 212 | 154 | 4 | 121 | 326 | 57 | 267 | 8.87e-18 | 82.4 |
Find 77 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAGTGGGCTTGAGTTAA+AGG | 0.197154 | 8:+65915273 | None:intergenic |
| ACCATTGACATTGAATATTA+TGG | 0.231681 | 8:-65914010 | MsG0880045879.01.T01:CDS |
| GCCAATTACCTTTCCTGTTA+TGG | 0.240601 | 8:+65915140 | None:intergenic |
| AGGTCAAAAGCTTATGTATT+AGG | 0.241379 | 8:-65913985 | MsG0880045879.01.T01:CDS |
| CCAATTACCTTTCCTGTTAT+GGG | 0.301565 | 8:+65915141 | None:intergenic |
| TCTATTAAAGTGATGGTAAA+AGG | 0.303644 | 8:-65914102 | MsG0880045879.01.T01:CDS |
| GGAAGTCATATTCCACTATA+TGG | 0.304021 | 8:-65914081 | MsG0880045879.01.T01:CDS |
| AATTGAGTGTGCATTGATTA+TGG | 0.311781 | 8:-65913932 | MsG0880045879.01.T01:CDS |
| CCCATAACAGGAAAGGTAAT+TGG | 0.338006 | 8:-65915141 | MsG0880045879.01.T01:CDS |
| GGTCAAAAGCTTATGTATTA+GGG | 0.353077 | 8:-65913984 | MsG0880045879.01.T01:CDS |
| GCAGTCAAGCTTCCCATAAC+AGG | 0.360744 | 8:-65915153 | MsG0880045879.01.T01:CDS |
| TGGTAATAATTGAGATCTAA+TGG | 0.385611 | 8:+65914266 | None:intergenic |
| TACCAACTTACACTAGCAAC+TGG | 0.405417 | 8:-65914248 | MsG0880045879.01.T01:CDS |
| GTCAATGGTACCGGTTCAAC+CGG | 0.412848 | 8:+65914024 | None:intergenic |
| CAATGGTTCACCGGTTGAAC+CGG | 0.415899 | 8:-65914034 | MsG0880045879.01.T01:CDS |
| AAGAAGCCCTTCTTCTTCAA+TGG | 0.421198 | 8:+65915093 | None:intergenic |
| CACTTGTTGGTAAGTCGAAT+AGG | 0.431111 | 8:+65913889 | None:intergenic |
| TCTCATTCCAACTCATCGTT+GGG | 0.432926 | 8:-65915226 | MsG0880045879.01.T01:CDS |
| AGCTTATGTATTAGGGGCAT+TGG | 0.433647 | 8:-65913977 | MsG0880045879.01.T01:CDS |
| GGAAAGGTAATTGGCGTCCT+TGG | 0.434224 | 8:-65915132 | MsG0880045879.01.T01:CDS |
| TTTCTTGATTGATAAAACTT+AGG | 0.441416 | 8:+65914135 | None:intergenic |
| GCAGGAAAATAGCATCTCCT+AGG | 0.445069 | 8:+65915040 | None:intergenic |
| CAAGCGGGTGCGGATTTGTC+AGG | 0.450101 | 8:-65914380 | MsG0880045879.01.T01:CDS |
| TTCTCATTCCAACTCATCGT+TGG | 0.452096 | 8:-65915227 | MsG0880045879.01.T01:CDS |
| TAACTCATACGTACACTTGT+TGG | 0.455029 | 8:+65913876 | None:intergenic |
| TTGTCGGTGAGGATTGTGTT+AGG | 0.463501 | 8:+65915380 | None:intergenic |
| GCTTACCTCGGAGTCTGTCT+TGG | 0.474995 | 8:+65915405 | None:intergenic |
| TTTAATGCCATTGAAGAAGA+AGG | 0.476425 | 8:-65915100 | MsG0880045879.01.T01:CDS |
| AGCCCACTTCAAAGCCCGTT+GGG | 0.480036 | 8:-65915262 | MsG0880045879.01.T01:CDS |
| AAGAAACAAACAACAAAAGC+AGG | 0.480722 | 8:+65915022 | None:intergenic |
| CGTTGGAAGAGTCGCGTGAT+GGG | 0.507373 | 8:+65915317 | None:intergenic |
| ATTTATTATTCAAGCGGGTG+CGG | 0.511779 | 8:-65914390 | MsG0880045879.01.T01:CDS |
| AATGAGGAGGAGATCCCAAC+GGG | 0.512593 | 8:+65915248 | None:intergenic |
| TTCCAGTTGCTAGTGTAAGT+TGG | 0.513143 | 8:+65914246 | None:intergenic |
| ACCATAATATTCAATGTCAA+TGG | 0.513438 | 8:+65914009 | None:intergenic |
| GAGGAAGATTCACGTGAATG+TGG | 0.516881 | 8:+65915202 | None:intergenic |
| AGGTAATTGGCGTCCTTGGA+AGG | 0.521480 | 8:-65915128 | MsG0880045879.01.T01:CDS |
| TCGTTGGAAGAGTCGCGTGA+TGG | 0.526058 | 8:+65915316 | None:intergenic |
| TTAATGCCATTGAAGAAGAA+GGG | 0.527012 | 8:-65915099 | MsG0880045879.01.T01:CDS |
| GCAAGATTGAACACTATCAA+TGG | 0.537446 | 8:-65914051 | MsG0880045879.01.T01:CDS |
| ATATTCAATGTCAATGGTAC+CGG | 0.541625 | 8:+65914015 | None:intergenic |
| GAACACTATCAATGGTTCAC+CGG | 0.546796 | 8:-65914043 | MsG0880045879.01.T01:CDS |
| TCAAAGATCTATTAAAGTGA+TGG | 0.547641 | 8:-65914109 | MsG0880045879.01.T01:CDS |
| ATGCAGATCGTGGATTCCCT+AGG | 0.552676 | 8:-65915057 | MsG0880045879.01.T01:CDS |
| GTCAGGAGTTGCCACTAGCA+TGG | 0.553632 | 8:-65914363 | MsG0880045879.01.T01:CDS |
| ATCCCAACGGGCTTTGAAGT+GGG | 0.555397 | 8:+65915260 | None:intergenic |
| GATCCCAACGGGCTTTGAAG+TGG | 0.558461 | 8:+65915259 | None:intergenic |
| AGCCCATCACGTGATCTTGT+CGG | 0.561235 | 8:+65915364 | None:intergenic |
| GTCATATTCCACTATATGGA+GGG | 0.565203 | 8:-65914077 | MsG0880045879.01.T01:CDS |
| TTGTGTTAGGCTGCTTACCT+CGG | 0.565391 | 8:+65915393 | None:intergenic |
| AAGCCCACTTCAAAGCCCGT+TGG | 0.565440 | 8:-65915263 | MsG0880045879.01.T01:CDS |
| GATAGATTTATTATTCAAGC+GGG | 0.571128 | 8:-65914395 | MsG0880045879.01.T01:CDS |
| GATGAGTTGGAATGAGAATG+AGG | 0.578944 | 8:+65915232 | None:intergenic |
| CAGGAAAATAGCATCTCCTA+GGG | 0.584033 | 8:+65915041 | None:intergenic |
| CTAATGGAGTTGATGCAACA+TGG | 0.586151 | 8:+65914282 | None:intergenic |
| TGATAGATTTATTATTCAAG+CGG | 0.596406 | 8:-65914396 | MsG0880045879.01.T01:CDS |
| CACCGACAAGATCACGTGAT+GGG | 0.601025 | 8:-65915366 | MsG0880045879.01.T01:CDS |
| TCATATTCCACTATATGGAG+GGG | 0.602380 | 8:-65914076 | MsG0880045879.01.T01:CDS |
| CAAGCTTCCCATAACAGGAA+AGG | 0.602700 | 8:-65915148 | MsG0880045879.01.T01:CDS |
| ATGTGGGCCCAACGATGAGT+TGG | 0.610898 | 8:+65915219 | None:intergenic |
| CATATTCCACTATATGGAGG+GGG | 0.611721 | 8:-65914075 | MsG0880045879.01.T01:CDS |
| GCATTAAACTGATCCTTCCA+AGG | 0.614580 | 8:+65915115 | None:intergenic |
| AGTCATATTCCACTATATGG+AGG | 0.618199 | 8:-65914078 | MsG0880045879.01.T01:CDS |
| ATTCATGGACACCATGCTAG+TGG | 0.619012 | 8:+65914352 | None:intergenic |
| TGACATTGAATATTATGGTG+AGG | 0.620220 | 8:-65914005 | MsG0880045879.01.T01:CDS |
| ATCACGTGATCTTGTCGGTG+AGG | 0.634015 | 8:+65915369 | None:intergenic |
| AGGAAGATTCACGTGAATGT+GGG | 0.636052 | 8:+65915203 | None:intergenic |
| GTCAAAAGCTTATGTATTAG+GGG | 0.642134 | 8:-65913983 | MsG0880045879.01.T01:CDS |
| GATGATGATGATGCAGATCG+TGG | 0.642710 | 8:-65915067 | MsG0880045879.01.T01:CDS |
| AGCTTGACTGCTCTTACGTG+AGG | 0.648575 | 8:+65915165 | None:intergenic |
| TCACCGACAAGATCACGTGA+TGG | 0.649203 | 8:-65915367 | MsG0880045879.01.T01:CDS |
| GAATGAGGAGGAGATCCCAA+CGG | 0.666085 | 8:+65915247 | None:intergenic |
| GAGTTGGAATGAGAATGAGG+AGG | 0.698188 | 8:+65915235 | None:intergenic |
| ACGTGAGGCAGAGTATCTCG+TGG | 0.711321 | 8:+65915180 | None:intergenic |
| TCACGCGACTCTTCCAACGA+CGG | 0.716008 | 8:-65915313 | MsG0880045879.01.T01:CDS |
| TGAGGCAGAGTATCTCGTGG+AGG | 0.725109 | 8:+65915183 | None:intergenic |
| GTTAGCCAAGACAGACTCCG+AGG | 0.733209 | 8:-65915410 | MsG0880045879.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCATGTATTATATTATA+TGG | - | Chr8:65915140-65915159 | MsG0880045879.01.T01:CDS | 10.0% |
| !! | ATTGAAAAATCAACATTATA+TGG | + | Chr8:65914827-65914846 | None:intergenic | 15.0% |
| !! | TGATAGATTTATTATTCAAG+CGG | - | Chr8:65914922-65914941 | MsG0880045879.01.T01:intron | 20.0% |
| !! | TTTCTTGATTGATAAAACTT+AGG | + | Chr8:65915186-65915205 | None:intergenic | 20.0% |
| !!! | CTTTTATTTGAATGCATATT+TGG | + | Chr8:65914668-65914687 | None:intergenic | 20.0% |
| !!! | TTTTAATTATAGTCACAATG+TGG | + | Chr8:65914745-65914764 | None:intergenic | 20.0% |
| ! | ACCATAATATTCAATGTCAA+TGG | + | Chr8:65915312-65915331 | None:intergenic | 25.0% |
| ! | ACCATTGACATTGAATATTA+TGG | - | Chr8:65915308-65915327 | MsG0880045879.01.T01:CDS | 25.0% |
| ! | AGATAAATCTGTATTTGAAG+TGG | - | Chr8:65914764-65914783 | MsG0880045879.01.T01:intron | 25.0% |
| ! | ATCATTTCTAATTTCAGTGT+AGG | - | Chr8:65914402-65914421 | MsG0880045879.01.T01:CDS | 25.0% |
| ! | GATAGATTTATTATTCAAGC+GGG | - | Chr8:65914923-65914942 | MsG0880045879.01.T01:intron | 25.0% |
| ! | TACACTGAAATTAGAAATGA+TGG | + | Chr8:65914403-65914422 | None:intergenic | 25.0% |
| ! | TAGTAATGCATTTAATACCA+TGG | - | Chr8:65914797-65914816 | MsG0880045879.01.T01:intron | 25.0% |
| ! | TCAAAGATCTATTAAAGTGA+TGG | - | Chr8:65915209-65915228 | MsG0880045879.01.T01:CDS | 25.0% |
| ! | TCTATTAAAGTGATGGTAAA+AGG | - | Chr8:65915216-65915235 | MsG0880045879.01.T01:CDS | 25.0% |
| ! | TGGTAATAATTGAGATCTAA+TGG | + | Chr8:65915055-65915074 | None:intergenic | 25.0% |
| ! | TTTAGATTCACAAAATGACA+TGG | - | Chr8:65914437-65914456 | MsG0880045879.01.T01:intron | 25.0% |
| !! | GATAAATCTGTATTTGAAGT+GGG | - | Chr8:65914765-65914784 | MsG0880045879.01.T01:intron | 25.0% |
| !! | TCAATTTTCTTGTTGAATCT+TGG | + | Chr8:65915372-65915391 | None:intergenic | 25.0% |
| !!! | ATGTTGTTGTTGTTATTTTC+TGG | + | Chr8:65913882-65913901 | None:intergenic | 25.0% |
| !!! | TTGTTTTGTGTATGTATGTT+TGG | - | Chr8:65914885-65914904 | MsG0880045879.01.T01:intron | 25.0% |
| AAGAAACAAACAACAAAAGC+AGG | + | Chr8:65914299-65914318 | None:intergenic | 30.0% | |
| AGGTCAAAAGCTTATGTATT+AGG | - | Chr8:65915333-65915352 | MsG0880045879.01.T01:CDS | 30.0% | |
| ATATTCAATGTCAATGGTAC+CGG | + | Chr8:65915306-65915325 | None:intergenic | 30.0% | |
| CAACATTATATGGAAAACCA+TGG | + | Chr8:65914817-65914836 | None:intergenic | 30.0% | |
| GAGAAATACCTTGAGAAAAA+TGG | + | Chr8:65914381-65914400 | None:intergenic | 30.0% | |
| GGTCAAAAGCTTATGTATTA+GGG | - | Chr8:65915334-65915353 | MsG0880045879.01.T01:CDS | 30.0% | |
| GTCAAAAGCTTATGTATTAG+GGG | - | Chr8:65915335-65915354 | MsG0880045879.01.T01:CDS | 30.0% | |
| TGACATTGAATATTATGGTG+AGG | - | Chr8:65915313-65915332 | MsG0880045879.01.T01:CDS | 30.0% | |
| TTAATGCCATTGAAGAAGAA+GGG | - | Chr8:65914219-65914238 | MsG0880045879.01.T01:intron | 30.0% | |
| TTTAATGCCATTGAAGAAGA+AGG | - | Chr8:65914218-65914237 | MsG0880045879.01.T01:intron | 30.0% | |
| ! | ATAGGCTTACTCATTTTCTT+CGG | + | Chr8:65915414-65915433 | None:intergenic | 30.0% |
| ! | TGTTTTCTCTCTCATTCTTT+GGG | - | Chr8:65914331-65914350 | MsG0880045879.01.T01:CDS | 30.0% |
| !! | AAGTTGTCACACTTGTTATT+TGG | - | Chr8:65914685-65914704 | MsG0880045879.01.T01:intron | 30.0% |
| !! | AATTGAGTGTGCATTGATTA+TGG | - | Chr8:65915386-65915405 | MsG0880045879.01.T01:CDS | 30.0% |
| !!! | AAACACTGCAACATTTTTTG+GGG | - | Chr8:65915012-65915031 | MsG0880045879.01.T01:CDS | 30.0% |
| !!! | AGAAACACTGCAACATTTTT+TGG | - | Chr8:65915010-65915029 | MsG0880045879.01.T01:CDS | 30.0% |
| !!! | GAAACACTGCAACATTTTTT+GGG | - | Chr8:65915011-65915030 | MsG0880045879.01.T01:CDS | 30.0% |
| !!! | TCTAAATGTCATTTTCACAG+TGG | + | Chr8:65914993-65915012 | None:intergenic | 30.0% |
| AATACCTTGAGAAAAATGGC+AGG | + | Chr8:65914377-65914396 | None:intergenic | 35.0% | |
| AGTCATATTCCACTATATGG+AGG | - | Chr8:65915240-65915259 | MsG0880045879.01.T01:CDS | 35.0% | |
| ATTTATTATTCAAGCGGGTG+CGG | - | Chr8:65914928-65914947 | MsG0880045879.01.T01:intron | 35.0% | |
| CCAATTACCTTTCCTGTTAT+GGG | + | Chr8:65914180-65914199 | None:intergenic | 35.0% | |
| GAATTGACAGTAATGAAGCA+CGG | + | Chr8:65914646-65914665 | None:intergenic | 35.0% | |
| GCAAGATTGAACACTATCAA+TGG | - | Chr8:65915267-65915286 | MsG0880045879.01.T01:CDS | 35.0% | |
| GGAAGTCATATTCCACTATA+TGG | - | Chr8:65915237-65915256 | MsG0880045879.01.T01:CDS | 35.0% | |
| GTCATATTCCACTATATGGA+GGG | - | Chr8:65915241-65915260 | MsG0880045879.01.T01:CDS | 35.0% | |
| TAACTCATACGTACACTTGT+TGG | + | Chr8:65915445-65915464 | None:intergenic | 35.0% | |
| TCATATTCCACTATATGGAG+GGG | - | Chr8:65915242-65915261 | MsG0880045879.01.T01:CDS | 35.0% | |
| ! | AGAAAAATGGCAGGTTTTTG+AGG | + | Chr8:65914368-65914387 | None:intergenic | 35.0% |
| ! | CATTTTCACAGTGGAATTCA+TGG | + | Chr8:65914984-65915003 | None:intergenic | 35.0% |
| ! | CTGTTTTCTCTCTCATTCTT+TGG | - | Chr8:65914330-65914349 | MsG0880045879.01.T01:CDS | 35.0% |
| ! | GAAAAATGGCAGGTTTTTGA+GGG | + | Chr8:65914367-65914386 | None:intergenic | 35.0% |
| !!! | AAAACCTGCCATTTTTCTCA+AGG | - | Chr8:65914370-65914389 | MsG0880045879.01.T01:CDS | 35.0% |
| AAGAAGCCCTTCTTCTTCAA+TGG | + | Chr8:65914228-65914247 | None:intergenic | 40.0% | |
| AGGAAGATTCACGTGAATGT+GGG | + | Chr8:65914118-65914137 | None:intergenic | 40.0% | |
| ATTATCTGACATAGACACCC+CGG | + | Chr8:65914545-65914564 | None:intergenic | 40.0% | |
| CAGGAAAATAGCATCTCCTA+GGG | + | Chr8:65914280-65914299 | None:intergenic | 40.0% | |
| CATATTCCACTATATGGAGG+GGG | - | Chr8:65915243-65915262 | MsG0880045879.01.T01:CDS | 40.0% | |
| CCCATAACAGGAAAGGTAAT+TGG | - | Chr8:65914177-65914196 | MsG0880045879.01.T01:intron | 40.0% | |
| GAACACTATCAATGGTTCAC+CGG | - | Chr8:65915275-65915294 | MsG0880045879.01.T01:CDS | 40.0% | |
| GCATTAAACTGATCCTTCCA+AGG | + | Chr8:65914206-65914225 | None:intergenic | 40.0% | |
| GCCAATTACCTTTCCTGTTA+TGG | + | Chr8:65914181-65914200 | None:intergenic | 40.0% | |
| TACCAACTTACACTAGCAAC+TGG | - | Chr8:65915070-65915089 | MsG0880045879.01.T01:CDS | 40.0% | |
| TCTCATTCCAACTCATCGTT+GGG | - | Chr8:65914092-65914111 | MsG0880045879.01.T01:CDS | 40.0% | |
| TTCCAGTTGCTAGTGTAAGT+TGG | + | Chr8:65915075-65915094 | None:intergenic | 40.0% | |
| TTCTCATTCCAACTCATCGT+TGG | - | Chr8:65914091-65914110 | MsG0880045879.01.T01:CDS | 40.0% | |
| ! | AGCTTATGTATTAGGGGCAT+TGG | - | Chr8:65915341-65915360 | MsG0880045879.01.T01:CDS | 40.0% |
| ! | CACTTGTTGGTAAGTCGAAT+AGG | + | Chr8:65915432-65915451 | None:intergenic | 40.0% |
| ! | GATGAGTTGGAATGAGAATG+AGG | + | Chr8:65914089-65914108 | None:intergenic | 40.0% |
| ! | TTGAAGTGGGCTTGAGTTAA+AGG | + | Chr8:65914048-65914067 | None:intergenic | 40.0% |
| !! | CTAATGGAGTTGATGCAACA+TGG | + | Chr8:65915039-65915058 | None:intergenic | 40.0% |
| ACCATCAATCTCTTTGTCCC+GGG | - | Chr8:65914524-65914543 | MsG0880045879.01.T01:intron | 45.0% | |
| ATTCATGGACACCATGCTAG+TGG | + | Chr8:65914969-65914988 | None:intergenic | 45.0% | |
| CAAGCTTCCCATAACAGGAA+AGG | - | Chr8:65914170-65914189 | MsG0880045879.01.T01:intron | 45.0% | |
| CACCATCAATCTCTTTGTCC+CGG | - | Chr8:65914523-65914542 | MsG0880045879.01.T01:intron | 45.0% | |
| CAGTAATGAAGCACGGACAT+CGG | + | Chr8:65914639-65914658 | None:intergenic | 45.0% | |
| GAGGAAGATTCACGTGAATG+TGG | + | Chr8:65914119-65914138 | None:intergenic | 45.0% | |
| GAGTTGGAATGAGAATGAGG+AGG | + | Chr8:65914086-65914105 | None:intergenic | 45.0% | |
| GCAGGAAAATAGCATCTCCT+AGG | + | Chr8:65914281-65914300 | None:intergenic | 45.0% | |
| TTATCTGACATAGACACCCC+GGG | + | Chr8:65914544-65914563 | None:intergenic | 45.0% | |
| TTGTCGGTGAGGATTGTGTT+AGG | + | Chr8:65913941-65913960 | None:intergenic | 45.0% | |
| TTGTGTTAGGCTGCTTACCT+CGG | + | Chr8:65913928-65913947 | None:intergenic | 45.0% | |
| ! | GATGATGATGATGCAGATCG+TGG | - | Chr8:65914251-65914270 | MsG0880045879.01.T01:CDS | 45.0% |
| !!! | TGTTGTTTTCTCACCGTCGT+TGG | + | Chr8:65914021-65914040 | None:intergenic | 45.0% |
| !! | AAAAGAAAAATTAAATAAAA+AGG | + | Chr8:65914867-65914886 | None:intergenic | 5.0% |
| !!! | TTATTTTCTTAAAATTTTAT+TGG | - | Chr8:65914591-65914610 | MsG0880045879.01.T01:intron | 5.0% |
| AATGAGGAGGAGATCCCAAC+GGG | + | Chr8:65914073-65914092 | None:intergenic | 50.0% | |
| AGCCCATCACGTGATCTTGT+CGG | + | Chr8:65913957-65913976 | None:intergenic | 50.0% | |
| AGCTTGACTGCTCTTACGTG+AGG | + | Chr8:65914156-65914175 | None:intergenic | 50.0% | |
| AGGTAATTGGCGTCCTTGGA+AGG | - | Chr8:65914190-65914209 | MsG0880045879.01.T01:intron | 50.0% | |
| ATCACGTGATCTTGTCGGTG+AGG | + | Chr8:65913952-65913971 | None:intergenic | 50.0% | |
| ATGCAGATCGTGGATTCCCT+AGG | - | Chr8:65914261-65914280 | MsG0880045879.01.T01:CDS | 50.0% | |
| CACCGACAAGATCACGTGAT+GGG | - | Chr8:65913952-65913971 | MsG0880045879.01.T01:CDS | 50.0% | |
| CCATCAATCTCTTTGTCCCG+GGG | - | Chr8:65914525-65914544 | MsG0880045879.01.T01:intron | 50.0% | |
| GAATGAGGAGGAGATCCCAA+CGG | + | Chr8:65914074-65914093 | None:intergenic | 50.0% | |
| GCAGTCAAGCTTCCCATAAC+AGG | - | Chr8:65914165-65914184 | MsG0880045879.01.T01:intron | 50.0% | |
| GGAAAGGTAATTGGCGTCCT+TGG | - | Chr8:65914186-65914205 | MsG0880045879.01.T01:intron | 50.0% | |
| TCACCGACAAGATCACGTGA+TGG | - | Chr8:65913951-65913970 | MsG0880045879.01.T01:CDS | 50.0% | |
| ! | CAATGGTTCACCGGTTGAAC+CGG | - | Chr8:65915284-65915303 | MsG0880045879.01.T01:CDS | 50.0% |
| !! | ATCCCAACGGGCTTTGAAGT+GGG | + | Chr8:65914061-65914080 | None:intergenic | 50.0% |
| !! | GTCAATGGTACCGGTTCAAC+CGG | + | Chr8:65915297-65915316 | None:intergenic | 50.0% |
| AAGCCCACTTCAAAGCCCGT+TGG | - | Chr8:65914055-65914074 | MsG0880045879.01.T01:CDS | 55.0% | |
| AGCCCACTTCAAAGCCCGTT+GGG | - | Chr8:65914056-65914075 | MsG0880045879.01.T01:CDS | 55.0% | |
| ATGTGGGCCCAACGATGAGT+TGG | + | Chr8:65914102-65914121 | None:intergenic | 55.0% | |
| CCCCGGGACAAAGAGATTGA+TGG | + | Chr8:65914528-65914547 | None:intergenic | 55.0% | |
| CGTTGGAAGAGTCGCGTGAT+GGG | + | Chr8:65914004-65914023 | None:intergenic | 55.0% | |
| CTTGCTCCCCCTCCATATAG+TGG | + | Chr8:65915252-65915271 | None:intergenic | 55.0% | |
| GCTTACCTCGGAGTCTGTCT+TGG | + | Chr8:65913916-65913935 | None:intergenic | 55.0% | |
| GTCAGGAGTTGCCACTAGCA+TGG | - | Chr8:65914955-65914974 | MsG0880045879.01.T01:CDS | 55.0% | |
| GTTAGCCAAGACAGACTCCG+AGG | - | Chr8:65913908-65913927 | MsG0880045879.01.T01:CDS | 55.0% | |
| TCACGCGACTCTTCCAACGA+CGG | - | Chr8:65914005-65914024 | MsG0880045879.01.T01:CDS | 55.0% | |
| TCGTTGGAAGAGTCGCGTGA+TGG | + | Chr8:65914005-65914024 | None:intergenic | 55.0% | |
| ! | ACGTGAGGCAGAGTATCTCG+TGG | + | Chr8:65914141-65914160 | None:intergenic | 55.0% |
| ! | TGAGGCAGAGTATCTCGTGG+AGG | + | Chr8:65914138-65914157 | None:intergenic | 55.0% |
| !! | GATCCCAACGGGCTTTGAAG+TGG | + | Chr8:65914062-65914081 | None:intergenic | 55.0% |
| CAAGCGGGTGCGGATTTGTC+AGG | - | Chr8:65914938-65914957 | MsG0880045879.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 65913873 | 65915467 | 65913873 | ID=MsG0880045879.01;Name=MsG0880045879.01 |
| Chr8 | mRNA | 65913873 | 65915467 | 65913873 | ID=MsG0880045879.01.T01;Parent=MsG0880045879.01;Name=MsG0880045879.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|3|0|330 |
| Chr8 | exon | 65914949 | 65915467 | 65914949 | ID=MsG0880045879.01.T01:exon:25085;Parent=MsG0880045879.01.T01 |
| Chr8 | exon | 65914244 | 65914429 | 65914244 | ID=MsG0880045879.01.T01:exon:25084;Parent=MsG0880045879.01.T01 |
| Chr8 | exon | 65913873 | 65914160 | 65913873 | ID=MsG0880045879.01.T01:exon:25083;Parent=MsG0880045879.01.T01 |
| Chr8 | CDS | 65914949 | 65915467 | 65914949 | ID=MsG0880045879.01.T01:cds;Parent=MsG0880045879.01.T01 |
| Chr8 | CDS | 65914244 | 65914429 | 65914244 | ID=MsG0880045879.01.T01:cds;Parent=MsG0880045879.01.T01 |
| Chr8 | CDS | 65913873 | 65914160 | 65913873 | ID=MsG0880045879.01.T01:cds;Parent=MsG0880045879.01.T01 |
| Gene Sequence |
| Protein sequence |
