AlfalfaGEDB | MsG0780041023.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041023.01

KEGG: K13496
GO: GO:0008152 GO:0016758
PFAM: PF00201

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041023.01.T01	XP_003625715.1	93.837	503	31	0	1	503	1	503	0	992

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041023.01.T01	Q9ZQ99	55.215	489	212	6	1	486	1	485	0	563

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041023.01.T01	G7L4W6	93.837	503	31	0	1	503	1	503	0.0	992

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0180004247.01	MsG0780041023.01	PPI
MsG0180005803.01	MsG0780041023.01	PPI
MsG0180005809.01	MsG0780041023.01	PPI
MsG0580026524.01	MsG0780041023.01	PPI
MsG0580026524.01	MsG0780041023.01	PPI
MsG0580026524.01	MsG0780041023.01	PPI
MsG0580026524.01	MsG0780041023.01	PPI
MsG0580029505.01	MsG0780041023.01	PPI
MsG0580029505.01	MsG0780041023.01	PPI
MsG0580029668.01	MsG0780041023.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041023.01.T01	MTR_7g102460	93.837	503	31	0	1	503	1	503	0.0	992
MsG0780041023.01.T01	MTR_7g102490	83.762	505	80	2	1	503	1	505	0.0	887
MsG0780041023.01.T01	MTR_4g024020	78.702	493	101	3	1	489	1	493	0.0	811
MsG0780041023.01.T01	MTR_7g102560	59.798	495	188	8	1	490	1	489	0.0	607
MsG0780041023.01.T01	MTR_7g117405	59.875	481	182	7	9	487	12	483	0.0	564
MsG0780041023.01.T01	MTR_7g102450	56.442	489	186	8	9	491	11	478	0.0	543
MsG0780041023.01.T01	MTR_1g062380	47.755	490	246	5	2	485	9	494	1.28e-170	491
MsG0780041023.01.T01	MTR_5g045960	50.305	491	235	8	1	486	1	487	2.17e-168	485
MsG0780041023.01.T01	MTR_5g045970	48.140	484	240	5	8	485	15	493	7.10e-168	484
MsG0780041023.01.T01	MTR_7g102520	50.305	491	227	10	8	489	11	493	1.27e-152	445

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041023.01.T01	AT2G36750	55.215	489	212	6	1	486	1	485	0.0	563
MsG0780041023.01.T01	AT2G36800	56.148	488	208	4	2	486	5	489	0.0	562
MsG0780041023.01.T01	AT2G36760	54.845	485	212	5	6	487	11	491	0.0	552
MsG0780041023.01.T01	AT2G36780	54.752	484	212	6	6	486	11	490	0.0	549
MsG0780041023.01.T01	AT2G36790	56.133	481	206	4	8	486	12	489	0.0	540
MsG0780041023.01.T01	AT2G36770	53.704	486	220	4	6	489	11	493	0.0	537
MsG0780041023.01.T01	AT3G53160	51.318	493	232	7	1	490	1	488	0.0	525
MsG0780041023.01.T01	AT3G53150	50.299	501	233	7	1	487	14	512	3.09e-172	496
MsG0780041023.01.T01	AT2G15480	38.788	495	274	10	7	484	8	490	1.91e-121	365
MsG0780041023.01.T01	AT2G15480	38.683	486	277	9	7	484	8	480	8.25e-121	363

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Find 96 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGGCCATGTAACCAT+TGG	0.565009	7:-85625904	None:intergenic
AAAGAGACTGGATTACCAGA+AGG	0.599319	7:+85624971	MsG0780041023.01.T01:CDS
AAAGTGGAGCTTTGGATCTT+GGG	0.372282	7:-85624756	None:intergenic
AAATGGGGTGAAGAAGAGGA+TGG	0.662496	7:+85626006	MsG0780041023.01.T01:CDS
AAATGTTGGTGTGAAAATTG+GGG	0.617684	7:+85625969	MsG0780041023.01.T01:CDS
AACAACACAAAGTGGAGCTT+TGG	0.402923	7:-85624764	None:intergenic
AACATTGCACAGACAGGAAT+AGG	0.368421	7:+85625313	MsG0780041023.01.T01:CDS
AAGAAGGAAGATATTGAAAG+AGG	0.502783	7:+85626039	MsG0780041023.01.T01:CDS
AAGAGACTGGATTACCAGAA+GGG	0.625432	7:+85624972	MsG0780041023.01.T01:CDS
AAGAGGAATAGAGAGGTTAA+TGG	0.329634	7:+85626056	MsG0780041023.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGTTGGTGTGAAAATTG+GGG	+	Chr7:85625969-85625988	MsG0780041023.01.T01:CDS	30.0%
AAGAAGGAAGATATTGAAAG+AGG	+	Chr7:85626039-85626058	MsG0780041023.01.T01:CDS	30.0%
ATATCAGAGATAATGCAAGT+TGG	-	Chr7:85625109-85625128	None:intergenic	30.0%
ATATTGAAAGAGGAATAGAG+AGG	+	Chr7:85626049-85626068	MsG0780041023.01.T01:CDS	30.0%
ATATTGTCGCATTATGCAAT+TGG	+	Chr7:85625823-85625842	MsG0780041023.01.T01:CDS	30.0%
ATTCCACCAAAAGAAATTCT+TGG	-	Chr7:85625175-85625194	None:intergenic	30.0%
CTTCCAAAAAAAGGAACATA+TGG	+	Chr7:85624730-85624749	MsG0780041023.01.T01:exon	30.0%
GGAACAATTTAGTAGTGATT+TGG	+	Chr7:85625354-85625373	MsG0780041023.01.T01:CDS	30.0%
TACTTGGATAAGATTCAAAG+AGG	+	Chr7:85625514-85625533	MsG0780041023.01.T01:CDS	30.0%
TCCTTAATCCTTCCAAAAAA+AGG	+	Chr7:85624721-85624740	MsG0780041023.01.T01:five_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	85624690	85626260	85624690	ID=MsG0780041023.01;Name=MsG0780041023.01
Chr7	mRNA	85624690	85626260	85624690	ID=MsG0780041023.01.T01;Parent=MsG0780041023.01;Name=MsG0780041023.01.T01;_AED=0.31;_eAED=0.31;_QI=59\|-1\|0\|1\|-1\|1\|1\|0\|503
Chr7	exon	85624690	85626260	85624690	ID=MsG0780041023.01.T01:exon:17884;Parent=MsG0780041023.01.T01
Chr7	five_prime_UTR	85624690	85624748	85624690	ID=MsG0780041023.01.T01:five_prime_utr;Parent=MsG0780041023.01.T01
Chr7	CDS	85624749	85626260	85624749	ID=MsG0780041023.01.T01:cds;Parent=MsG0780041023.01.T01

Gene Sequence

>MsG0780041023.01.T01

ATGGCATCCCAAGATCCAAAGCTCCACTTTGTGTTGTTTCCAATGATGGCACAAGGTCACATGATCCCAATGATGGACATAGCCAAAATATTGGCACAAAATCACAATGTTATTGTTACAATAGTAACCACCCCACACAATGCATCTCGTTACACATCAATCCTAGCACGTTATGTTGAATCTGGTCTTCATATTCAATTAGTTCAACTTCAATTTCCATGTAAAGAGACTGGATTACCAGAAGGGTGTGAGAATCTTGACATGCTACCTTCACTTGGTGCAGCCACAAATTTCTTCAATTCATCAAAATTTCTACAACAAGAAGTTGAAAAGTTATTTGAAGAGTTAACACCACCACCAACTTGCATTATCTCTGATATGTGTTTGCCATATACAATTCACGTAGCTAGAAAGTTCAATATTCCAAGAATTTCTTTTGGTGGAATAAATTGCTTCTATCTTTTGTGCATGCATAATGCACATGTCAATAATATTATAGAAACCATGGCTAATAATGAATTTGAATACTTTGATGTGCCTGGTATTCCTGATAAAATTGAAATTAACATTGCACAGACAGGAATAGGATTAAAGGGTGAAGCTTGGGAACAATTTAGTAGTGATTTGGCTCAAGCTGAAATGGGTACTTATGGTGTAATCATGAATTCTTTTGAAGAGTTAGAGCCAGCATATGCAAAGGAATATAAAAAGATAAAAAATGACAAAGTTTGGTGTATTGGTCCTGTATCCCTTAGTAACACTGATTACTTGGATAAGATTCAAAGAGGTAATAATAATAAAGTTTCAATTGATGAATGGGAGCACTTGAAGTGGCTTGATTCTCAGAAACAAGGGAGTGTTCTCTATGCATGCCTTGGAAGTTTATGCAATATAACACCACTACAGTTGATAGAGCTTGGTTTAGCATTAGAAGCAACAAAAAGACCTTTTATTTGGGTTTTAAGAGAAGGAAATGAATTAGAAGAATTCAAAAAATGGATTGATGAAAGTGGATTTGAGGAAAGAATCAATGATAGAGGCCTAGTGATTAAGGGTTGGGCTCCTCAGTTATTGATATTGTCGCATTATGCAATTGGAGGATTCTTAACACATTGTGGTTGGAATTCTACTCTTGAAGCACTATGTGCTGGTGTGCCAATGGTTACATGGCCACTTTTTGCGGACCAATTTTTGAATGAATGTTTAGTTGTACAAATATTAAATGTTGGTGTGAAAATTGGGGTGAAGAGTCCAATGAAATGGGGTGAAGAAGAGGATGGTGTGTTGGTAAAGAAGGAAGATATTGAAAGAGGAATAGAGAGGTTAATGGATGAGACAAGTGAATGTAAAGAAAGAAGAAAAAGGATTAGAGAGCTTGCTATGATGGCTAAAAAGGCTGTAGAAAAAGGTGGATCTTCTCACTCTAATGTTTCTTTGTTCATCCAAGATATCATGAAGAAAAATAAAGATATGATGTCATCATTTGCCAATGGAAATGCCAATTCAAAATGA

Protein sequence

>MsG0780041023.01.T01

MASQDPKLHFVLFPMMAQGHMIPMMDIAKILAQNHNVIVTIVTTPHNASRYTSILARYVESGLHIQLVQLQFPCKETGLPEGCENLDMLPSLGAATNFFNSSKFLQQEVEKLFEELTPPPTCIISDMCLPYTIHVARKFNIPRISFGGINCFYLLCMHNAHVNNIIETMANNEFEYFDVPGIPDKIEINIAQTGIGLKGEAWEQFSSDLAQAEMGTYGVIMNSFEELEPAYAKEYKKIKNDKVWCIGPVSLSNTDYLDKIQRGNNNKVSIDEWEHLKWLDSQKQGSVLYACLGSLCNITPLQLIELGLALEATKRPFIWVLREGNELEEFKKWIDESGFEERINDRGLVIKGWAPQLLILSHYAIGGFLTHCGWNSTLEALCAGVPMVTWPLFADQFLNECLVVQILNVGVKIGVKSPMKWGEEEDGVLVKKEDIERGIERLMDETSECKERRKRIRELAMMAKKAVEKGGSSHSNVSLFIQDIMKKNKDMMSSFANGNANSK*