AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041039.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041039.01.T01 MTR_7g102780 88.312 231 16 2 1 231 1 220 3.66e-123 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041039.01.T01 AT2G36680 58.898 236 73 6 1 231 1 217 5.43e-83 246
MsG0780041039.01.T01 AT3G53120 62.288 236 65 5 1 231 1 217 3.41e-81 242
MsG0780041039.01.T01 AT2G36680 49.686 159 58 7 1 145 1 151 4.49e-34 120
MsG0780041039.01.T01 AT2G36680 49.686 159 58 7 1 145 1 151 4.49e-34 120
MsG0780041039.01.T01 AT2G36680 54.815 135 42 5 1 130 1 121 7.12e-34 119

Find 59 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGTAATCTGCATAAGATTT+TGG 0.151446 7:-85764815 None:intergenic
CCAAGATGTTTCGAGGATTA+TGG 0.274182 7:+85761519 MsG0780041039.01.T01:exon
AAGTCATACCTTGAATTCTT+TGG 0.285394 7:-85764974 None:intergenic
CTCATTAGCAGTAGCTAATT+CGG 0.305961 7:-85764886 None:intergenic
ATGAACTTGCCAAGGAAAAT+AGG 0.312092 7:+85764429 MsG0780041039.01.T01:CDS
ATGGTTCCGGCGGCTTCTGC+TGG 0.332798 7:-85761830 None:intergenic
CGGAACCATTGCTTCTTTGA+AGG 0.372001 7:+85761844 MsG0780041039.01.T01:CDS
TCTCTCTGTCAAGGAGTTGC+TGG 0.377858 7:-85765136 None:intergenic
GTTTCTGAATTCGCTTGAAC+AGG 0.386990 7:+85762015 MsG0780041039.01.T01:CDS
TTTCAGATTCCTCATCTGTC+TGG 0.388757 7:-85765106 None:intergenic
TGATCAGTGTTGATGAGTTA+AGG 0.393187 7:+85761960 MsG0780041039.01.T01:intron
CCAAAATCTTATGCAGATTA+CGG 0.402957 7:+85764815 MsG0780041039.01.T01:CDS
ATTATATGAGCCTTGACATA+TGG 0.419725 7:+85765248 MsG0780041039.01.T01:exon
TCCCTTCTCCAAAGAATTCA+AGG 0.425395 7:+85764966 MsG0780041039.01.T01:CDS
TTGCTTCTTTGAAGGATAAG+AGG 0.426022 7:+85761852 MsG0780041039.01.T01:CDS
ATCCACACAACTCATAAAAC+TGG 0.426691 7:-85765294 None:intergenic
CCATAATCCTCGAAACATCT+TGG 0.430059 7:-85761519 None:intergenic
GAAGAGGAAGCAGGTGTAGC+AGG 0.431721 7:-85761773 None:intergenic
TGTAGCAGGCCTTGATGAAC+TGG 0.440421 7:-85761759 None:intergenic
TTATGAATACTAGTCGCTAC+AGG 0.447462 7:-85765377 None:intergenic
CGGCCTCGGTGAAGCGGAAG+AGG 0.448181 7:-85761789 None:intergenic
TGCAGGAGATCACTGGCTAC+AGG 0.452149 7:+85764782 MsG0780041039.01.T01:intron
TACCTTGAATTCTTTGGAGA+AGG 0.465604 7:-85764968 None:intergenic
CTTCAAAGAAGCAATGGTTC+CGG 0.471378 7:-85761843 None:intergenic
ACATGAGAAGAAGGCGGCCT+CGG 0.476768 7:-85761803 None:intergenic
CACGCAACCAAGATGTTTCG+AGG 0.479551 7:+85761512 None:intergenic
ATTCTTTGGAGAAGGGATGC+AGG 0.482592 7:-85764960 None:intergenic
CTGGATGAACTCATGATAGA+TGG 0.484238 7:-85761740 None:intergenic
ACCTTGAATTCTTTGGAGAA+GGG 0.513047 7:-85764967 None:intergenic
TTCTTTGGAGAAGGGATGCA+GGG 0.513967 7:-85764959 None:intergenic
GATTACGCGCAGGGGATCAC+AGG 0.517722 7:+85761673 MsG0780041039.01.T01:intron
GTTCCGGCGGCTTCTGCTGG+CGG 0.526949 7:-85761827 None:intergenic
CTTATCCTTCAAAGAAGCAA+TGG 0.534815 7:-85761849 None:intergenic
GGTGAAGCGGAAGAGGAAGC+AGG 0.534990 7:-85761782 None:intergenic
TGCCAAGGAAAATAGGCAGC+TGG 0.538132 7:+85764436 MsG0780041039.01.T01:CDS
GTGTGAATGCAGGAGATCAC+TGG 0.552112 7:+85764775 MsG0780041039.01.T01:intron
AGAAGGCGGCCTCGGTGAAG+CGG 0.557939 7:-85761795 None:intergenic
GCAGGAGATCACTGGCTACA+GGG 0.564273 7:+85764783 MsG0780041039.01.T01:intron
CTCGAAACATCTTGGTTGCG+TGG 0.565937 7:-85761511 None:intergenic
GCTGGCGGAACATGAGAAGA+AGG 0.566925 7:-85761812 None:intergenic
AAGGAAAATAGGCAGCTGGC+AGG 0.567548 7:+85764440 MsG0780041039.01.T01:CDS
AAGAGTTCTCATGTGGTAAG+TGG 0.570043 7:-85765201 None:intergenic
CAAGGTCAATCTCTCTGTCA+AGG 0.586704 7:-85765145 None:intergenic
GTTCCGCCAGCAGAAGCCGC+CGG 0.588268 7:+85761824 MsG0780041039.01.T01:CDS
GCTGAAAGATGAACTTGCCA+AGG 0.593928 7:+85764421 MsG0780041039.01.T01:intron
CAGGAGATCACTGGCTACAG+GGG 0.610729 7:+85764784 MsG0780041039.01.T01:intron
TGAGTTCATCCAGTTCATCA+AGG 0.615325 7:+85761750 MsG0780041039.01.T01:CDS
AAGCTTCATCACAGCAGTCA+TGG 0.622765 7:+85761711 MsG0780041039.01.T01:CDS
CAAAGAAGCAATGGTTCCGG+CGG 0.625125 7:-85761840 None:intergenic
TTCTACACTGTTTCACAAGG+AGG 0.626301 7:-85764851 None:intergenic
ATCTGTGAACCAGACAGATG+AGG 0.626864 7:+85765097 MsG0780041039.01.T01:CDS
TTATTCTACACTGTTTCACA+AGG 0.628829 7:-85764854 None:intergenic
TATGAATACTAGTCGCTACA+GGG 0.629918 7:-85765376 None:intergenic
TGCTGTGATGAAGCTTCGTG+TGG 0.631614 7:-85761704 None:intergenic
GATGTATAAGAGTTCTCATG+TGG 0.646760 7:-85765208 None:intergenic
TCTTTGGAGAAGGGATGCAG+GGG 0.657685 7:-85764958 None:intergenic
GGCGGAACATGAGAAGAAGG+CGG 0.670333 7:-85761809 None:intergenic
GATGAACTCATGATAGATGG+TGG 0.671294 7:-85761737 None:intergenic
CTTCCTCTTCCGCTTCACCG+AGG 0.707613 7:+85761786 MsG0780041039.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAAAAAATATGTATGA+AGG + Chr7:85762828-85762847 MsG0780041039.01.T01:intron 10.0%
!! TAATAAAAAATATGTATGAA+GGG + Chr7:85762829-85762848 MsG0780041039.01.T01:intron 10.0%
!! AAAAAAAAAGGGAAAAATTT+CGG + Chr7:85763355-85763374 MsG0780041039.01.T01:intron 15.0%
!! AGCTAAATATTACTAAATAT+AGG - Chr7:85762235-85762254 None:intergenic 15.0%
!!! AAATTTTTCCCTTTTTTTTT+TGG - Chr7:85763355-85763374 None:intergenic 15.0%
!!! ATACATGTTTTTTTAACAAA+CGG + Chr7:85762982-85763001 MsG0780041039.01.T01:intron 15.0%
!!! ATTTGATTATTGTGAAATTT+TGG - Chr7:85761605-85761624 None:intergenic 15.0%
!!! ATTTTAGTTTTAGATATTAG+GGG - Chr7:85762339-85762358 None:intergenic 15.0%
!!! CATTTTAGTTTTAGATATTA+GGG - Chr7:85762340-85762359 None:intergenic 15.0%
!!! TCATTTTAGTTTTAGATATT+AGG - Chr7:85762341-85762360 None:intergenic 15.0%
!! AAAAAGAATGATAATTTCCA+AGG - Chr7:85762102-85762121 None:intergenic 20.0%
!! AGTATTCTACCAAAAAAAAA+AGG + Chr7:85763343-85763362 MsG0780041039.01.T01:intron 20.0%
!! ATAAATCGATAAAACTCAAA+TGG + Chr7:85762558-85762577 MsG0780041039.01.T01:intron 20.0%
!! CACATTACAGAAAATTAATT+TGG + Chr7:85762641-85762660 MsG0780041039.01.T01:intron 20.0%
!! CATAATCTATTAATCAAGAT+TGG + Chr7:85764732-85764751 MsG0780041039.01.T01:intron 20.0%
!! GTATTCTACCAAAAAAAAAA+GGG + Chr7:85763344-85763363 MsG0780041039.01.T01:intron 20.0%
!! TATTGTATGAAATTGAATGT+TGG + Chr7:85763398-85763417 MsG0780041039.01.T01:intron 20.0%
!! TGTTAAAAAAACATGTATCA+TGG - Chr7:85762980-85762999 None:intergenic 20.0%
!! TTTAACATCAATTACTTGAT+TGG + Chr7:85761875-85761894 MsG0780041039.01.T01:intron 20.0%
!!! AAATTAATTTGGTTTAATGC+TGG + Chr7:85762652-85762671 MsG0780041039.01.T01:intron 20.0%
!!! AATTAATTTGGTTTAATGCT+GGG + Chr7:85762653-85762672 MsG0780041039.01.T01:intron 20.0%
!!! ATCCAAACTTCTATATTTTA+TGG - Chr7:85762795-85762814 None:intergenic 20.0%
!!! CTTGTGTTTTAACTATTTTA+TGG + Chr7:85764382-85764401 MsG0780041039.01.T01:intron 20.0%
!!! GTAGAATACTGTTTTTTTTT+TGG - Chr7:85763333-85763352 None:intergenic 20.0%
!!! TCCAAACTTCTATATTTTAT+GGG - Chr7:85762794-85762813 None:intergenic 20.0%
! AAATATGTGAATTCTTTGGA+AGG - Chr7:85762492-85762511 None:intergenic 25.0%
! AACAAAAACACTGCTAAAAA+AGG - Chr7:85764334-85764353 None:intergenic 25.0%
! AACAAAATGATGCTAAATAG+AGG + Chr7:85763234-85763253 MsG0780041039.01.T01:intron 25.0%
! AAGAATTACAAGCATAAACT+TGG + Chr7:85762727-85762746 MsG0780041039.01.T01:intron 25.0%
! ACAAAATGATGCTAAATAGA+GGG + Chr7:85763235-85763254 MsG0780041039.01.T01:intron 25.0%
! AGTTCTATAACACTTATTGA+TGG - Chr7:85764514-85764533 None:intergenic 25.0%
! ATAGGTTTCACTATTACTAT+AGG + Chr7:85762884-85762903 MsG0780041039.01.T01:intron 25.0%
! ATCTATTAATCAAGATTGGA+CGG + Chr7:85764736-85764755 MsG0780041039.01.T01:intron 25.0%
! CAAATTTGTCTTTAATACAG+AGG + Chr7:85764537-85764556 MsG0780041039.01.T01:intron 25.0%
! CATGGATAATGATACATAAA+AGG - Chr7:85764047-85764066 None:intergenic 25.0%
! CTTTAAATATGAATCATGAC+AGG + Chr7:85763728-85763747 MsG0780041039.01.T01:intron 25.0%
! GCAATAATTGGAAATTGAAA+AGG - Chr7:85761583-85761602 None:intergenic 25.0%
! GCATAAATATGTGAATTCTT+TGG - Chr7:85762496-85762515 None:intergenic 25.0%
! TAAGGATAAGAAACTTACAT+TGG - Chr7:85762053-85762072 None:intergenic 25.0%
! TGTGTATGATAAAAAATCCA+TGG - Chr7:85763479-85763498 None:intergenic 25.0%
!! ATCCTTACTAATCTAGTTTA+TGG + Chr7:85762066-85762085 MsG0780041039.01.T01:intron 25.0%
!! ATTTTCCAAAAATTCCAATC+AGG - Chr7:85764639-85764658 None:intergenic 25.0%
!! CCAAACTTCTATATTTTATG+GGG - Chr7:85762793-85762812 None:intergenic 25.0%
!! GTTTTCTTAACTGTTAACAT+AGG + Chr7:85761905-85761924 MsG0780041039.01.T01:intron 25.0%
!! TTTAACTATTTTATGGCCTA+TGG + Chr7:85764389-85764408 MsG0780041039.01.T01:intron 25.0%
!! TTTTCATATTCCATATGTCA+AGG - Chr7:85765261-85765280 None:intergenic 25.0%
!! TTTTCCAAAAATTCCAATCA+GGG - Chr7:85764638-85764657 None:intergenic 25.0%
!!! CATCATTTTGTTTGATTTGA+TGG - Chr7:85763226-85763245 None:intergenic 25.0%
!!! TCATGTATTTCTAGTGATTT+TGG + Chr7:85762367-85762386 MsG0780041039.01.T01:intron 25.0%
!!! TGTGAAATTTTGGCAATAAT+TGG - Chr7:85761595-85761614 None:intergenic 25.0%
!!! TGTTTTTGTTTTTGTTCTGA+TGG + Chr7:85764344-85764363 MsG0780041039.01.T01:intron 25.0%
!!! TTTTTTTTAGAGTAGTTGAG+CGG + Chr7:85762600-85762619 MsG0780041039.01.T01:intron 25.0%
AAGTCATACCTTGAATTCTT+TGG - Chr7:85764977-85764996 None:intergenic 30.0%
AATCAAATATACAGCTTCCA+TGG - Chr7:85762687-85762706 None:intergenic 30.0%
ACTACTTATTGCAATAGTTC+TGG + Chr7:85765005-85765024 MsG0780041039.01.T01:intron 30.0%
AGGTTGTTGAGTTTATAGAT+AGG + Chr7:85762156-85762175 MsG0780041039.01.T01:intron 30.0%
ATGTGAAAAGGAAATTGGAA+TGG - Chr7:85763987-85764006 None:intergenic 30.0%
ATTATATGAGCCTTGACATA+TGG + Chr7:85765248-85765267 MsG0780041039.01.T01:exon 30.0%
CACCATAAACTAGATTAGTA+AGG - Chr7:85762071-85762090 None:intergenic 30.0%
CAGTATGGTAACTATTTGTT+AGG - Chr7:85764123-85764142 None:intergenic 30.0%
CCAAAATCTTATGCAGATTA+CGG + Chr7:85764815-85764834 MsG0780041039.01.T01:CDS 30.0%
CCCCATAAAATATAGAAGTT+TGG + Chr7:85762790-85762809 MsG0780041039.01.T01:intron 30.0%
GAAATTTGGAGAATAGAAAC+AGG + Chr7:85763079-85763098 MsG0780041039.01.T01:intron 30.0%
GTATCTAGTTAGTTAGTAGT+AGG + Chr7:85762136-85762155 MsG0780041039.01.T01:intron 30.0%
GTGTCAATGGAATATAAGAT+CGG + Chr7:85763898-85763917 MsG0780041039.01.T01:intron 30.0%
TACAGAGGAAAATCTACAAA+AGG + Chr7:85764552-85764571 MsG0780041039.01.T01:intron 30.0%
TATCATTATCCATGTGACTA+TGG + Chr7:85764083-85764102 MsG0780041039.01.T01:intron 30.0%
TATGAATCATGACAGGATAT+CGG + Chr7:85763735-85763754 MsG0780041039.01.T01:intron 30.0%
TGCTAAAAAAGGTTAAGCAT+AGG - Chr7:85764323-85764342 None:intergenic 30.0%
TTATTCTACACTGTTTCACA+AGG - Chr7:85764857-85764876 None:intergenic 30.0%
TTCATAATCACAACGTAAGA+AGG - Chr7:85762268-85762287 None:intergenic 30.0%
TTTATGGTGGTTTATTACCT+TGG + Chr7:85762082-85762101 MsG0780041039.01.T01:intron 30.0%
TTTCCAAAAATTCCAATCAG+GGG - Chr7:85764637-85764656 None:intergenic 30.0%
! AAATGAGTTTTCTGCAGTTA+AGG + Chr7:85764655-85764674 MsG0780041039.01.T01:intron 30.0%
! CTTACTAATCTAGTTTATGG+TGG + Chr7:85762069-85762088 MsG0780041039.01.T01:intron 30.0%
!! ATGCTTTATTTACTCCAACT+TGG - Chr7:85763113-85763132 None:intergenic 30.0%
!! TCTTTAGGATGTATGGATTT+GGG + Chr7:85762197-85762216 MsG0780041039.01.T01:intron 30.0%
!! TGCTTTATTTACTCCAACTT+GGG - Chr7:85763112-85763131 None:intergenic 30.0%
!!! TTTTGTTTTTGTTCTGATGG+TGG + Chr7:85764347-85764366 MsG0780041039.01.T01:intron 30.0%
!!! TTTTTTCACTATTACGACGA+AGG + Chr7:85765037-85765056 MsG0780041039.01.T01:intron 30.0%
AAAATAGATCCTGCAGTTAG+TGG - Chr7:85762518-85762537 None:intergenic 35.0%
AAATTGGAATGGAAAGAACC+AGG - Chr7:85763976-85763995 None:intergenic 35.0%
ACAGTATCACTCAAGCTTAA+AGG + Chr7:85763291-85763310 MsG0780041039.01.T01:intron 35.0%
AGAGGTAAAAGCCTAAAAGA+TGG + Chr7:85763652-85763671 MsG0780041039.01.T01:intron 35.0%
AGGGGAAAAAACTAATCACA+GGG - Chr7:85764619-85764638 None:intergenic 35.0%
ATATTTATGCCACTAACTGC+AGG + Chr7:85762506-85762525 MsG0780041039.01.T01:intron 35.0%
ATCCACACAACTCATAAAAC+TGG - Chr7:85765297-85765316 None:intergenic 35.0%
ATGAACTTGCCAAGGAAAAT+AGG + Chr7:85764429-85764448 MsG0780041039.01.T01:CDS 35.0%
ATTTCTGCAAAAAAGCTGCA+AGG - Chr7:85765166-85765185 None:intergenic 35.0%
CAGTATCACTCAAGCTTAAA+GGG + Chr7:85763292-85763311 MsG0780041039.01.T01:intron 35.0%
CATCAGATTCTGATGTCTTT+AGG + Chr7:85762182-85762201 MsG0780041039.01.T01:intron 35.0%
CTCATTAGCAGTAGCTAATT+CGG - Chr7:85764889-85764908 None:intergenic 35.0%
CTTATCCTTCAAAGAAGCAA+TGG - Chr7:85761852-85761871 None:intergenic 35.0%
GAGACATGTGAAAAGGAAAT+TGG - Chr7:85763992-85764011 None:intergenic 35.0%
GAGGTAAAAGCCTAAAAGAT+GGG + Chr7:85763653-85763672 MsG0780041039.01.T01:intron 35.0%
GATGTATAAGAGTTCTCATG+TGG - Chr7:85765211-85765230 None:intergenic 35.0%
GGAGGATAATCTCTATTTAG+AGG + Chr7:85763634-85763653 MsG0780041039.01.T01:intron 35.0%
GTGACTATGGTAACAAACTT+GGG + Chr7:85764096-85764115 MsG0780041039.01.T01:intron 35.0%
TAGCTCGTATTGTAGAAAGA+TGG + Chr7:85763543-85763562 MsG0780041039.01.T01:intron 35.0%
TATCACTGAATCTGTGTCAA+TGG + Chr7:85763885-85763904 MsG0780041039.01.T01:intron 35.0%
TATGAATACTAGTCGCTACA+GGG - Chr7:85765379-85765398 None:intergenic 35.0%
TGATGAAGAAGGTTGTAGAA+TGG + Chr7:85763613-85763632 MsG0780041039.01.T01:intron 35.0%
TGTGACTATGGTAACAAACT+TGG + Chr7:85764095-85764114 MsG0780041039.01.T01:intron 35.0%
TTAGGAATCAGGTAAGATCA+CGG + Chr7:85764593-85764612 MsG0780041039.01.T01:intron 35.0%
TTATGAATACTAGTCGCTAC+AGG - Chr7:85765380-85765399 None:intergenic 35.0%
TTCTTCATCAGTGCTTCTTT+GGG - Chr7:85763603-85763622 None:intergenic 35.0%
TTGAGATGAGAATGTTACCA+TGG + Chr7:85763459-85763478 MsG0780041039.01.T01:intron 35.0%
TTTCAGCTGATCATATCCAT+AGG - Chr7:85764408-85764427 None:intergenic 35.0%
! AATTTGGTTTAATGCTGGGA+TGG + Chr7:85762657-85762676 MsG0780041039.01.T01:intron 35.0%
! ACAACTAATGTAAGAGCACA+AGG + Chr7:85762854-85762873 MsG0780041039.01.T01:intron 35.0%
! ACCTTGAATTCTTTGGAGAA+GGG - Chr7:85764970-85764989 None:intergenic 35.0%
! CCGTAATCTGCATAAGATTT+TGG - Chr7:85764818-85764837 None:intergenic 35.0%
! GAATGTTGATGTGTGTTGAT+AGG + Chr7:85763855-85763874 MsG0780041039.01.T01:intron 35.0%
! GAGTTTGACTCTTTTCAGTA+TGG - Chr7:85764138-85764157 None:intergenic 35.0%
! TACCTTGAATTCTTTGGAGA+AGG - Chr7:85764971-85764990 None:intergenic 35.0%
! TCTTTGGAAGGATTAAGCAT+CGG - Chr7:85762480-85762499 None:intergenic 35.0%
! TGTTGTTATTGTTGCAGTGA+TGG + Chr7:85763811-85763830 MsG0780041039.01.T01:intron 35.0%
! TTCTAGTGATTTTGGATGTG+AGG + Chr7:85762375-85762394 MsG0780041039.01.T01:intron 35.0%
! TTGCTTCTTTGAAGGATAAG+AGG + Chr7:85761852-85761871 MsG0780041039.01.T01:CDS 35.0%
! TTTCCCCTGATTGGAATTTT+TGG + Chr7:85764631-85764650 MsG0780041039.01.T01:intron 35.0%
!! AACCAGTTTTATGAGTTGTG+TGG + Chr7:85765292-85765311 MsG0780041039.01.T01:three_prime_UTR 35.0%
!! ACTTATTGCAATAGTTCTGG+TGG + Chr7:85765008-85765027 MsG0780041039.01.T01:intron 35.0%
!! AGTTTGTTACCATAGTCACA+TGG - Chr7:85764095-85764114 None:intergenic 35.0%
!! CACTAAAAGTGTTTACCTTG+CGG - Chr7:85763196-85763215 None:intergenic 35.0%
!! GTCTTTAGGATGTATGGATT+TGG + Chr7:85762196-85762215 MsG0780041039.01.T01:intron 35.0%
!! TAGAGGGTGTTGTCAATTAT+AGG + Chr7:85763251-85763270 MsG0780041039.01.T01:intron 35.0%
!! TCTGATGTCTTTAGGATGTA+TGG + Chr7:85762190-85762209 MsG0780041039.01.T01:intron 35.0%
!! TGATCAGTGTTGATGAGTTA+AGG + Chr7:85761960-85761979 MsG0780041039.01.T01:intron 35.0%
!! TGTAGAAAGATGGTTTGCTT+AGG + Chr7:85763553-85763572 MsG0780041039.01.T01:intron 35.0%
!!! GATTAGTTTTTTCCCCTGAT+TGG + Chr7:85764622-85764641 MsG0780041039.01.T01:intron 35.0%
AAAACTTCAGCACACTCGTA+CGG - Chr7:85764286-85764305 None:intergenic 40.0%
AAAAGCCTAAAAGATGGGCA+TGG + Chr7:85763658-85763677 MsG0780041039.01.T01:intron 40.0%
AAACACTCAAATACCAGCAG+GGG + Chr7:85763147-85763166 MsG0780041039.01.T01:intron 40.0%
AAGAGTTCTCATGTGGTAAG+TGG - Chr7:85765204-85765223 None:intergenic 40.0%
AATAGTCCGCAGACATGTAT+TGG - Chr7:85764194-85764213 None:intergenic 40.0%
AGAAACACTCAAATACCAGC+AGG + Chr7:85763145-85763164 MsG0780041039.01.T01:intron 40.0%
AGAGCACAAGGTGGAAATAT+AGG + Chr7:85762866-85762885 MsG0780041039.01.T01:intron 40.0%
ATAGTCCGCAGACATGTATT+GGG - Chr7:85764193-85764212 None:intergenic 40.0%
CAGGGGAAAAAACTAATCAC+AGG - Chr7:85764620-85764639 None:intergenic 40.0%
CCAAGATGTTTCGAGGATTA+TGG + Chr7:85761519-85761538 MsG0780041039.01.T01:exon 40.0%
CCATAATCCTCGAAACATCT+TGG - Chr7:85761522-85761541 None:intergenic 40.0%
CTGGATGAACTCATGATAGA+TGG - Chr7:85761743-85761762 None:intergenic 40.0%
CTTCAAAGAAGCAATGGTTC+CGG - Chr7:85761846-85761865 None:intergenic 40.0%
CTTCTTCATCAGTGCTTCTT+TGG - Chr7:85763604-85763623 None:intergenic 40.0%
GAAACACTCAAATACCAGCA+GGG + Chr7:85763146-85763165 MsG0780041039.01.T01:intron 40.0%
GATGAACTCATGATAGATGG+TGG - Chr7:85761740-85761759 None:intergenic 40.0%
GGAATATAAGATCGGACATG+CGG + Chr7:85763906-85763925 MsG0780041039.01.T01:intron 40.0%
GTTTCTGAATTCGCTTGAAC+AGG + Chr7:85762015-85762034 MsG0780041039.01.T01:CDS 40.0%
TACATAAAAGGAGAGTCGCA+TGG - Chr7:85764065-85764084 None:intergenic 40.0%
TATCACTCGAGAAACAGTAG+AGG + Chr7:85763520-85763539 MsG0780041039.01.T01:intron 40.0%
TCCCTTCTCCAAAGAATTCA+AGG + Chr7:85764966-85764985 MsG0780041039.01.T01:CDS 40.0%
TGAAGAAGGTTGTAGAATGG+AGG + Chr7:85763616-85763635 MsG0780041039.01.T01:intron 40.0%
TGAGTTCATCCAGTTCATCA+AGG + Chr7:85761750-85761769 MsG0780041039.01.T01:CDS 40.0%
TTACTATAGGTGTGCATCGA+AGG + Chr7:85762897-85762916 MsG0780041039.01.T01:intron 40.0%
TTCTACACTGTTTCACAAGG+AGG - Chr7:85764854-85764873 None:intergenic 40.0%
TTGGAGAATCGAGAGATTCA+TGG + Chr7:85763040-85763059 MsG0780041039.01.T01:intron 40.0%
TTTCAGATTCCTCATCTGTC+TGG - Chr7:85765109-85765128 None:intergenic 40.0%
! ACTAATGTAAGAGCACAAGG+TGG + Chr7:85762857-85762876 MsG0780041039.01.T01:intron 40.0%
! CATGATGGAACTTAGGAATC+AGG + Chr7:85764582-85764601 MsG0780041039.01.T01:intron 40.0%
! GAGAGATGAAGCGTTAGTTA+AGG - Chr7:85764021-85764040 None:intergenic 40.0%
! GATGAAGCGTTAGTTAAGGT+CGG - Chr7:85764017-85764036 None:intergenic 40.0%
! GTTTTCCATGCCCATCTTTT+AGG - Chr7:85763666-85763685 None:intergenic 40.0%
! TGATTTTGGATGTGAGGAAG+AGG + Chr7:85762381-85762400 MsG0780041039.01.T01:intron 40.0%
!! AGAAAGATGGTTTGCTTAGG+TGG + Chr7:85763556-85763575 MsG0780041039.01.T01:intron 40.0%
!! CAAAGAAGCACTGATGAAGA+AGG + Chr7:85763602-85763621 MsG0780041039.01.T01:intron 40.0%
AAACTTCAGCACACTCGTAC+GGG - Chr7:85764285-85764304 None:intergenic 45.0%
AAGCTTCATCACAGCAGTCA+TGG + Chr7:85761711-85761730 MsG0780041039.01.T01:CDS 45.0%
AATCCTTCCAACCTGTAGCT+AGG + Chr7:85762418-85762437 MsG0780041039.01.T01:intron 45.0%
ACAAAAGGAACCTCGCATGA+TGG + Chr7:85764567-85764586 MsG0780041039.01.T01:intron 45.0%
ACTGTGCTCTACTGTACAGT+TGG + Chr7:85764258-85764277 MsG0780041039.01.T01:intron 45.0%
AGAGAATACACTATGCCGCA+AGG + Chr7:85763178-85763197 MsG0780041039.01.T01:intron 45.0%
AGATGGGCATGGAAAACGAT+AGG + Chr7:85763669-85763688 MsG0780041039.01.T01:intron 45.0%
AGATTGGGATTCCTAGCTAC+AGG - Chr7:85762432-85762451 None:intergenic 45.0%
AGCTAGGAATCCCAATCTGT+AGG + Chr7:85762434-85762453 MsG0780041039.01.T01:intron 45.0%
ATCCATGTACCTAACCCCAT+TGG + Chr7:85763769-85763788 MsG0780041039.01.T01:intron 45.0%
ATCTGTGAACCAGACAGATG+AGG + Chr7:85765097-85765116 MsG0780041039.01.T01:CDS 45.0%
ATTGGTGTGGGAAAAGGCTT+TGG + Chr7:85763787-85763806 MsG0780041039.01.T01:intron 45.0%
CAAGGTCAATCTCTCTGTCA+AGG - Chr7:85765148-85765167 None:intergenic 45.0%
CGGAACCATTGCTTCTTTGA+AGG + Chr7:85761844-85761863 MsG0780041039.01.T01:CDS 45.0%
GACATCCCAATACATGTCTG+CGG + Chr7:85764185-85764204 MsG0780041039.01.T01:intron 45.0%
GCTAGGAATCCCAATCTGTA+GGG + Chr7:85762435-85762454 MsG0780041039.01.T01:intron 45.0%
GCTGAAAGATGAACTTGCCA+AGG + Chr7:85764421-85764440 MsG0780041039.01.T01:intron 45.0%
GTCGGTTGAGACATGTGAAA+AGG - Chr7:85763999-85764018 None:intergenic 45.0%
TATCGAGCAGACACAAGAGA+TGG + Chr7:85762952-85762971 MsG0780041039.01.T01:intron 45.0%
TCACTATTACGACGAAGGCT+AGG + Chr7:85765042-85765061 MsG0780041039.01.T01:intron 45.0%
TGCAATAAACCCCCTGTTCT+AGG + Chr7:85763939-85763958 MsG0780041039.01.T01:intron 45.0%
TGCCTCAAATGCCTAGAACA+GGG - Chr7:85763953-85763972 None:intergenic 45.0%
TTCCTAAGTTCCATCATGCG+AGG - Chr7:85764580-85764599 None:intergenic 45.0%
! AAAGCCTTTTCCCACACCAA+TGG - Chr7:85763788-85763807 None:intergenic 45.0%
! AACCTCGCATGATGGAACTT+AGG + Chr7:85764575-85764594 MsG0780041039.01.T01:intron 45.0%
! AAGCCTTTTCCCACACCAAT+GGG - Chr7:85763787-85763806 None:intergenic 45.0%
! ATTCCTAGCTACAGGTTGGA+AGG - Chr7:85762424-85762443 None:intergenic 45.0%
! ATTCTTTGGAGAAGGGATGC+AGG - Chr7:85764963-85764982 None:intergenic 45.0%
! GTTGTTGTTGATTACGCGCA+GGG + Chr7:85761664-85761683 MsG0780041039.01.T01:intron 45.0%
! TGTTGTTGTTGATTACGCGC+AGG + Chr7:85761663-85761682 MsG0780041039.01.T01:intron 45.0%
! TTCTTTGGAGAAGGGATGCA+GGG - Chr7:85764962-85764981 None:intergenic 45.0%
! TTGTTGTTGATTACGCGCAG+GGG + Chr7:85761665-85761684 MsG0780041039.01.T01:intron 45.0%
!! GATGGTTTGCTTAGGTGGTT+TGG + Chr7:85763561-85763580 MsG0780041039.01.T01:intron 45.0%
!! TAAGCATCGGCCTGCATTAT+AGG - Chr7:85762467-85762486 None:intergenic 45.0%
!! AAATAATTAAATTAGAAATT+TGG + Chr7:85763065-85763084 MsG0780041039.01.T01:intron 5.0%
!! AAATTATTAAATTAGAAATT+TGG + Chr7:85763021-85763040 MsG0780041039.01.T01:intron 5.0%
AACAGGACTTCTGCCCAAGT+TGG + Chr7:85763096-85763115 MsG0780041039.01.T01:intron 50.0%
AACCCCATTGGTGTGGGAAA+AGG + Chr7:85763781-85763800 MsG0780041039.01.T01:intron 50.0%
AAGGAAAATAGGCAGCTGGC+AGG + Chr7:85764440-85764459 MsG0780041039.01.T01:CDS 50.0%
AAGTTACCTAGACGTGCTGC+GGG + Chr7:85762764-85762783 MsG0780041039.01.T01:intron 50.0%
AATGCTGGGATGGTCAACCA+TGG + Chr7:85762667-85762686 MsG0780041039.01.T01:intron 50.0%
AGGGACAGTGCCTATAATGC+AGG + Chr7:85762454-85762473 MsG0780041039.01.T01:intron 50.0%
CAAAGAAGCAATGGTTCCGG+CGG - Chr7:85761843-85761862 None:intergenic 50.0%
CACCAATGGGGTTAGGTACA+TGG - Chr7:85763774-85763793 None:intergenic 50.0%
CCTCAAATGCCTAGAACAGG+GGG - Chr7:85763951-85763970 None:intergenic 50.0%
GAAGTTACCTAGACGTGCTG+CGG + Chr7:85762763-85762782 MsG0780041039.01.T01:intron 50.0%
GATATTAGGGGTGACTCGCA+AGG - Chr7:85762327-85762346 None:intergenic 50.0%
GCCTCAAATGCCTAGAACAG+GGG - Chr7:85763952-85763971 None:intergenic 50.0%
GTACCTAACCCCATTGGTGT+GGG + Chr7:85763775-85763794 MsG0780041039.01.T01:intron 50.0%
GTGCCTCAAATGCCTAGAAC+AGG - Chr7:85763954-85763973 None:intergenic 50.0%
GTGTGAATGCAGGAGATCAC+TGG + Chr7:85764775-85764794 MsG0780041039.01.T01:intron 50.0%
TCTCTCTGTCAAGGAGTTGC+TGG - Chr7:85765139-85765158 None:intergenic 50.0%
TGCCAAGGAAAATAGGCAGC+TGG + Chr7:85764436-85764455 MsG0780041039.01.T01:CDS 50.0%
TGCTGTGATGAAGCTTCGTG+TGG - Chr7:85761707-85761726 None:intergenic 50.0%
TGGGATTCCTAGCTACAGGT+TGG - Chr7:85762428-85762447 None:intergenic 50.0%
TGTACCTAACCCCATTGGTG+TGG + Chr7:85763774-85763793 MsG0780041039.01.T01:intron 50.0%
TGTAGCAGGCCTTGATGAAC+TGG - Chr7:85761762-85761781 None:intergenic 50.0%
TTTCCCACACCAATGGGGTT+AGG - Chr7:85763781-85763800 None:intergenic 50.0%
! AGCCTTTTCCCACACCAATG+GGG - Chr7:85763786-85763805 None:intergenic 50.0%
! AGGCACTGTCCCTACAGATT+GGG - Chr7:85762447-85762466 None:intergenic 50.0%
! TAGGCACTGTCCCTACAGAT+TGG - Chr7:85762448-85762467 None:intergenic 50.0%
! TCTCTGATTTTCACCCCTGC+TGG - Chr7:85763163-85763182 None:intergenic 50.0%
! TCTGCTGACTGTGTGAATGC+AGG + Chr7:85764765-85764784 MsG0780041039.01.T01:intron 50.0%
! TCTTTGGAGAAGGGATGCAG+GGG - Chr7:85764961-85764980 None:intergenic 50.0%
! TGCCAGCTGCCTATTTTCCT+TGG - Chr7:85764441-85764460 None:intergenic 50.0%
! TTCTAGGCATTTGAGGCACC+TGG + Chr7:85763955-85763974 MsG0780041039.01.T01:intron 50.0%
ACATGAGAAGAAGGCGGCCT+CGG - Chr7:85761806-85761825 None:intergenic 55.0%
GAAGAGGAAGCAGGTGTAGC+AGG - Chr7:85761776-85761795 None:intergenic 55.0%
GCTGGCGGAACATGAGAAGA+AGG - Chr7:85761815-85761834 None:intergenic 55.0%
GGCGGAACATGAGAAGAAGG+CGG - Chr7:85761812-85761831 None:intergenic 55.0%
GGGGTGACTCGCAAGGAAAA+AGG - Chr7:85762320-85762339 None:intergenic 55.0%
! CAGGAGATCACTGGCTACAG+GGG + Chr7:85764784-85764803 MsG0780041039.01.T01:intron 55.0%
! CCCCCTGTTCTAGGCATTTG+AGG + Chr7:85763948-85763967 MsG0780041039.01.T01:intron 55.0%
! GCAGGAGATCACTGGCTACA+GGG + Chr7:85764783-85764802 MsG0780041039.01.T01:intron 55.0%
! TGCAGGAGATCACTGGCTAC+AGG + Chr7:85764782-85764801 MsG0780041039.01.T01:intron 55.0%
CTTCCTCTTCCGCTTCACCG+AGG + Chr7:85761786-85761805 MsG0780041039.01.T01:CDS 60.0%
GATTACGCGCAGGGGATCAC+AGG + Chr7:85761673-85761692 MsG0780041039.01.T01:intron 60.0%
GGTGAAGCGGAAGAGGAAGC+AGG - Chr7:85761785-85761804 None:intergenic 60.0%
TTACCTAGACGTGCTGCGGG+AGG + Chr7:85762767-85762786 MsG0780041039.01.T01:intron 60.0%
AGAAGGCGGCCTCGGTGAAG+CGG - Chr7:85761798-85761817 None:intergenic 65.0%
ATGGTTCCGGCGGCTTCTGC+TGG - Chr7:85761833-85761852 None:intergenic 65.0%
CGGCCTCGGTGAAGCGGAAG+AGG - Chr7:85761792-85761811 None:intergenic 70.0%
GTTCCGCCAGCAGAAGCCGC+CGG + Chr7:85761824-85761843 MsG0780041039.01.T01:CDS 70.0%
GTTCCGGCGGCTTCTGCTGG+CGG - Chr7:85761830-85761849 None:intergenic 70.0%
GGGCCTCCCGCAGCACGTCT+AGG - Chr7:85762773-85762792 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 85761514 85765419 85761514 ID=MsG0780041039.01;Name=MsG0780041039.01
Chr7 mRNA 85761514 85765419 85761514 ID=MsG0780041039.01.T01;Parent=MsG0780041039.01;Name=MsG0780041039.01.T01;_AED=0.40;_eAED=0.42;_QI=10|0.8|0.83|1|0.8|0.83|6|163|231
Chr7 exon 85761514 85761540 85761514 ID=MsG0780041039.01.T01:exon:19383;Parent=MsG0780041039.01.T01
Chr7 exon 85761685 85761873 85761685 ID=MsG0780041039.01.T01:exon:19384;Parent=MsG0780041039.01.T01
Chr7 exon 85761967 85762054 85761967 ID=MsG0780041039.01.T01:exon:19385;Parent=MsG0780041039.01.T01
Chr7 exon 85764422 85764461 85764422 ID=MsG0780041039.01.T01:exon:19386;Parent=MsG0780041039.01.T01
Chr7 exon 85764787 85764987 85764787 ID=MsG0780041039.01.T01:exon:19387;Parent=MsG0780041039.01.T01
Chr7 exon 85765096 85765419 85765096 ID=MsG0780041039.01.T01:exon:19388;Parent=MsG0780041039.01.T01
Chr7 five_prime_UTR 85761514 85761523 85761514 ID=MsG0780041039.01.T01:five_prime_utr;Parent=MsG0780041039.01.T01
Chr7 CDS 85761524 85761540 85761524 ID=MsG0780041039.01.T01:cds;Parent=MsG0780041039.01.T01
Chr7 CDS 85761685 85761873 85761685 ID=MsG0780041039.01.T01:cds;Parent=MsG0780041039.01.T01
Chr7 CDS 85761967 85762054 85761967 ID=MsG0780041039.01.T01:cds;Parent=MsG0780041039.01.T01
Chr7 CDS 85764422 85764461 85764422 ID=MsG0780041039.01.T01:cds;Parent=MsG0780041039.01.T01
Chr7 CDS 85764787 85764987 85764787 ID=MsG0780041039.01.T01:cds;Parent=MsG0780041039.01.T01
Chr7 CDS 85765096 85765256 85765096 ID=MsG0780041039.01.T01:cds;Parent=MsG0780041039.01.T01
Chr7 three_prime_UTR 85765257 85765419 85765257 ID=MsG0780041039.01.T01:three_prime_utr;Parent=MsG0780041039.01.T01
Gene Sequence

>MsG0780041039.01.T01

ATGTTTCGAGGATTATGGGGATCACAGGAGCAACAACCACACGAAGCTTCATCACAGCAGTCATGGTATCCACCATCTATCATGAGTTCATCCAGTTCATCAAGGCCTGCTACACCTGCTTCCTCTTCCGCTTCACCGAGGCCGCCTTCTTCTCATGTTCCGCCAGCAGAAGCCGCCGGAACCATTGCTTCTTTGAAGGATAAGAGTGTTGATGAGTTAAGGAAGCTTTTGTCTGATAAAGATGCTTATCAACAGTTTCTGAATTCGCTTGAACAGGTCAAGATTCAAACCAATCTGAAAGATGAACTTGCCAAGGAAAATAGGCAGCTGGCAGGAGATCACTGGCTACAGGGGATTAATATCCAAAATCTTATGCAGATTACGGAACTTATATCTTTCCTCCTTGTGAAACAGTGTAGAATAATTCGTACAACCGAATTAGCTACTGCTAATGAGAAACTAAACGAGCTTGAGAAGCAAAAAGAAGAAATGTTAAAGATGAATTCCCCTGCATCCCTTCTCCAAAGAATTCAAGAATCTGTGAACCAGACAGATGAGGAATCTGAAAATCTGCACCAGCAACTCCTTGACAGAGAGATTGACCTTGCAGCTTTTTTGCAGAAATACAAGAAGCTACGCACCACTTACCACATGAGAACTCTTATACATCTTGCTGCTAAAACATCAATTATATGA
Protein sequence

>MsG0780041039.01.T01

MFRGLWGSQEQQPHEASSQQSWYPPSIMSSSSSSRPATPASSSASPRPPSSHVPPAEAAGTIASLKDKSVDELRKLLSDKDAYQQFLNSLEQVKIQTNLKDELAKENRQLAGDHWLQGINIQNLMQITELISFLLVKQCRIIRTTELATANEKLNELEKQKEEMLKMNSPASLLQRIQESVNQTDEESENLHQQLLDREIDLAAFLQKYKKLRTTYHMRTLIHLAAKTSII*