AlfalfaGEDB | MsG0780041602.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041602.01

KEGG: K23313
GO: GO:0003697 GO:1990879
PFAM: PF15490

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041602.01.T01	XP_003626191.1	95.604	91	4	0	28	118	35	125	1.36E-54	176

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041602.01.T01	Q6NME7	53.086	81	37	1	29	108	36	116	2.00E-25	95.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047825.01	MsG0780041602.01	-0.804226	2.391111e-49	1.226113e-46
MsG0180004116.01	MsG0780041602.01	-0.813585	2.376558e-51	1.558160e-48
MsG0380015878.01	MsG0780041602.01	-0.817367	3.421290e-52	2.486702e-49
MsG0480022597.01	MsG0780041602.01	-0.813502	2.477806e-51	1.620988e-48
MsG0480022598.01	MsG0780041602.01	-0.802583	5.237857e-49	2.575183e-46
MsG0580024853.01	MsG0780041602.01	-0.801842	7.439618e-49	3.589473e-46
MsG0680035656.01	MsG0780041602.01	-0.805887	1.074211e-49	5.749189e-47
MsG0780038829.01	MsG0780041602.01	-0.821991	3.007725e-53	2.485473e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041602.01.T01	MTR_7g112530	95.604	91	4	0	28	118	35	125	1.64e-58	176

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041602.01.T01	AT1G56260	53.086	81	37	1	29	108	36	116	2.04e-26	95.5
MsG0780041602.01.T01	AT1G56260	53.086	81	37	1	29	108	36	116	2.04e-26	95.5

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Find 38 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAATGTCACCATGA+AGG	0.555013	7:+92914945	None:intergenic
AAACTGTTTCAAAAGCAGCA+AGG	0.639053	7:+92915185	None:intergenic
AAGAGTATTCGTGTAACCTG+TGG	0.591562	7:+92915588	None:intergenic
AAGCATGTTTATATGCTTCT+AGG	0.224256	7:-92915031	MsG0780041602.01.T01:three_prime_UTR
AAGGACCTTAAGTTTCAAGT+TGG	0.504185	7:-92915500	MsG0780041602.01.T01:CDS
AAGTTGCCGAATTATTCAAA+TGG	0.529169	7:+92915154	None:intergenic
ACTTGTGTAATGCATCCCAC+AGG	0.644354	7:-92915604	MsG0780041602.01.T01:CDS
AGAGTATTCGTGTAACCTGT+GGG	0.594484	7:+92915589	None:intergenic
AGCAGTCTCTCTCTCTTTGG+TGG	0.440934	7:-92914748	None:intergenic
AGCCAACCATTTGAATAATT+CGG	0.300995	7:-92915160	MsG0780041602.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGAAATGTCACCATGA+AGG	+	Chr7:92915473-92915492	None:intergenic	30.0%
AAGCATGTTTATATGCTTCT+AGG	-	Chr7:92915384-92915403	MsG0780041602.01.T01:intron	30.0%
AAGTTGCCGAATTATTCAAA+TGG	+	Chr7:92915264-92915283	None:intergenic	30.0%
AGCCAACCATTTGAATAATT+CGG	-	Chr7:92915255-92915274	MsG0780041602.01.T01:intron	30.0%
ATTCATTACATTGCACAATC+AGG	+	Chr7:92915634-92915653	None:intergenic	30.0%
TTCATTACATTGCACAATCA+GGG	+	Chr7:92915633-92915652	None:intergenic	30.0%
TTTACAAGTTACAACCTTCA+TGG	-	Chr7:92915456-92915475	MsG0780041602.01.T01:CDS	30.0%
AAACTGTTTCAAAAGCAGCA+AGG	+	Chr7:92915233-92915252	None:intergenic	35.0%
ATTCGGCAACTTAACTTTGT+AGG	-	Chr7:92915272-92915291	MsG0780041602.01.T01:intron	35.0%
CAGATCCAACTTGAAACTTA+AGG	+	Chr7:92914923-92914942	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	92914750	92915687	92914750	ID=MsG0780041602.01;Name=MsG0780041602.01
Chr7	mRNA	92914750	92915687	92914750	ID=MsG0780041602.01.T01;Parent=MsG0780041602.01;Name=MsG0780041602.01.T01;_AED=0.45;_eAED=0.49;_QI=0\|1\|0.5\|1\|1\|1\|2\|402\|118
Chr7	exon	92914750	92915271	92914750	ID=MsG0780041602.01.T01:exon:40753;Parent=MsG0780041602.01.T01
Chr7	exon	92915451	92915687	92915451	ID=MsG0780041602.01.T01:exon:40752;Parent=MsG0780041602.01.T01
Chr7	CDS	92915451	92915687	92915451	ID=MsG0780041602.01.T01:cds;Parent=MsG0780041602.01.T01
Chr7	CDS	92915152	92915271	92915152	ID=MsG0780041602.01.T01:cds;Parent=MsG0780041602.01.T01
Chr7	three_prime_UTR	92914750	92915151	92914750	ID=MsG0780041602.01.T01:three_prime_utr;Parent=MsG0780041602.01.T01

Gene Sequence	>MsG0780041602.01.T01 CTGCTTTGTTATATATCTTTTGATGTTGTTGCGAATTATGATTGTGAAGTATCTTGGAATAACTTGTGTAATGCATCCCACAGGTTACACGAATACTCTTTAGAGACAGGCCTTGCAACAGTCATCGATGGTAATGACATTCTAAAAGTTAGTACTGAGCATCTGAAGGACCTTAAGTTTCAAGTTGGATCTGTCTACCAATTCATTGGCGAGCTTCTTATCCGAACTGATGATGAGGGAGTTTTGCAGGCACGTGTTGGTAGAAATGTCGACGGGATTGATCTCAATCTTTATCATCAGTCCTTGCTGCTTTTGAAACAGTTTCAAGCCAACCATTTGAATAATTCGGCAACTTAA
Protein sequence	>MsG0780041602.01.T01 LLCYISFDVVANYDCEVSWNNLCNASHRLHEYSLETGLATVIDGNDILKVSTEHLKDLKFQVGSVYQFIGELLIRTDDEGVLQARVGRNVDGIDLNLYHQSLLLLKQFQANHLNNSAT*