AlfalfaGEDB | MsG0180004116.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004116.01

KEGG: K01681
GO: GO:0008152
PFAM: PF00330 PF00694

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004116.01.T01	AES61065.2	89.84	876	34	4	13	840	5	873	0	1595

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004116.01.T01	P49608	73.371	875	186	2	13	840	2	876	0	1340

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004116.01.T01	G7I4S9	89.840	876	34	4	13	840	5	873	0.0	1595

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048982.01	MsG0180004116.01	0.802311	5.959273e-49	2.909886e-46
MsG0180000267.01	MsG0180004116.01	0.810138	1.338135e-50	8.002647e-48
MsG0180002912.01	MsG0180004116.01	0.800063	1.718225e-48	7.924774e-46
MsG0180004116.01	MsG0180004600.01	0.801288	9.665275e-49	4.598363e-46
MsG0180004116.01	MsG0280007439.01	0.809570	1.772951e-50	1.044636e-47
MsG0180004116.01	MsG0280008220.01	0.810623	1.051153e-50	6.367670e-48
MsG0180004116.01	MsG0280010423.01	-0.807632	4.597204e-50	2.573514e-47
MsG0180004116.01	MsG0380011870.01	0.831260	1.845817e-55	1.992352e-52
MsG0180004116.01	MsG0380014913.01	0.802690	4.977930e-49	2.454140e-46
MsG0180004116.01	MsG0380015931.01	0.802430	5.630515e-49	2.757670e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004116.01.T01	MTR_1g075520	89.840	876	34	4	13	840	5	873	0.0	1595
MsG0180004116.01.T01	MTR_4g048190	73.998	873	180	2	14	839	84	956	0.0	1347
MsG0180004116.01.T01	MTR_2g088360	71.982	878	199	2	9	839	79	956	0.0	1316
MsG0180004116.01.T01	MTR_5g022940	69.863	876	216	3	13	840	2	877	0.0	1273
MsG0180004116.01.T01	MTR_5g022940	69.987	773	185	2	115	840	1	773	0.0	1131
MsG0180004116.01.T01	MTR_2g067620	62.326	576	132	8	66	576	134	689	0.0	655
MsG0180004116.01.T01	MTR_2g067620	59.873	157	48	3	727	880	700	844	1.06e-46	181
MsG0180004116.01.T01	MTR_1g075530	82.308	130	22	1	895	1024	1	129	1.61e-65	217
MsG0180004116.01.T01	MTR_4g115490	54.167	144	40	2	543	685	154	272	2.79e-40	150
MsG0180004116.01.T01	MTR_4g074000	36.810	163	89	3	665	814	1	162	5.29e-20	90.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004116.01.T01	AT2G05710	72.165	873	196	2	14	839	95	967	0.0	1322
MsG0180004116.01.T01	AT4G26970	70.429	886	214	3	1	839	88	972	0.0	1289
MsG0180004116.01.T01	AT4G35830	70.400	875	212	2	13	840	2	876	0.0	1285
MsG0180004116.01.T01	AT4G35830	70.634	773	180	2	115	840	1	773	0.0	1137
MsG0180004116.01.T01	AT5G54950	58.929	56	23	0	785	840	1	56	1.38e-16	75.9
MsG0180004116.01.T01	AT3G23440	35.156	128	52	4	897	1024	1	97	1.08e-12	65.9
MsG0180004116.01.T01	AT5G44060	37.755	98	47	2	927	1024	56	139	3.39e-11	63.2

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Find 296 sgRNAs with CRISPR-Local

Find 809 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGTTCACATTCCAAC+AGG	0.504428	1:+73589182	MsG0180004116.01.T01:CDS
AAACATGTGTCCAGAATATG+AGG	0.513153	1:+73586676	MsG0180004116.01.T01:CDS
AAACCTCTGGATTAAATATT+CGG	0.334523	1:-73587734	None:intergenic
AAACTTATGAATGGAGAAGT+GGG	0.598282	1:+73589155	MsG0180004116.01.T01:CDS
AAAGATTTGGTTTCCTTAAA+TGG	0.124294	1:+73585800	MsG0180004116.01.T01:CDS
AAAGCCGGGACCACAACAAA+TGG	0.407089	1:-73592958	None:intergenic
AAAGCCTCGGATGAAGAGTT+GGG	0.458598	1:+73593340	MsG0180004116.01.T01:CDS
AAAGTTAACGACATAGAACC+TGG	0.608897	1:+73589691	MsG0180004116.01.T01:CDS
AAATAGTGAAATACGAGGAA+TGG	0.472702	1:-73592989	None:intergenic
AAATCGGCTAGGCTTTCACA+CGG	0.714781	1:+73587864	MsG0180004116.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATCTTGAAGGAATCA+TGG	+	Chr1:73591839-73591858	MsG0180004116.01.T01:intron	30.0%
AAAATGATAGATGTGGTTTG+GGG	-	Chr1:73592822-73592841	None:intergenic	30.0%
AAACTTATGAATGGAGAAGT+GGG	+	Chr1:73589155-73589174	MsG0180004116.01.T01:CDS	30.0%
AAAGGTAGGGAAAAAAAAAC+AGG	+	Chr1:73588634-73588653	MsG0180004116.01.T01:intron	30.0%
AAAGTGTACAATTGAGATAG+GGG	-	Chr1:73590713-73590732	None:intergenic	30.0%
AAATAGTGAAATACGAGGAA+TGG	-	Chr1:73592992-73593011	None:intergenic	30.0%
AACGAAACTTACAATTTCAG+AGG	+	Chr1:73592388-73592407	MsG0180004116.01.T01:intron	30.0%
AACTTAATTACCTCAATCTC+AGG	+	Chr1:73583496-73583515	MsG0180004116.01.T01:intron	30.0%
AATAGTGAAATACGAGGAAT+GGG	-	Chr1:73592991-73593010	None:intergenic	30.0%
AATCATGAAGTTATGGTAAG+AGG	+	Chr1:73589104-73589123	MsG0180004116.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	73582868	73594685	73582868	ID=MsG0180004116.01;Name=MsG0180004116.01
Chr1	mRNA	73582868	73594685	73582868	ID=MsG0180004116.01.T01;Parent=MsG0180004116.01;Name=MsG0180004116.01.T01;_AED=0.23;_eAED=0.27;_QI=0\|0\|0\|0.9\|1\|1\|20\|0\|1107
Chr1	exon	73582868	73582904	73582868	ID=MsG0180004116.01.T01:exon:5304;Parent=MsG0180004116.01.T01
Chr1	exon	73584525	73584629	73584525	ID=MsG0180004116.01.T01:exon:5305;Parent=MsG0180004116.01.T01
Chr1	exon	73584879	73585039	73584879	ID=MsG0180004116.01.T01:exon:5306;Parent=MsG0180004116.01.T01
Chr1	exon	73585148	73585240	73585148	ID=MsG0180004116.01.T01:exon:5307;Parent=MsG0180004116.01.T01
Chr1	exon	73585697	73585882	73585697	ID=MsG0180004116.01.T01:exon:5308;Parent=MsG0180004116.01.T01
Chr1	exon	73585965	73586027	73585965	ID=MsG0180004116.01.T01:exon:5309;Parent=MsG0180004116.01.T01
Chr1	exon	73586388	73586532	73586388	ID=MsG0180004116.01.T01:exon:5310;Parent=MsG0180004116.01.T01
Chr1	exon	73586630	73586770	73586630	ID=MsG0180004116.01.T01:exon:5311;Parent=MsG0180004116.01.T01
Chr1	exon	73586994	73587090	73586994	ID=MsG0180004116.01.T01:exon:5312;Parent=MsG0180004116.01.T01
Chr1	exon	73587191	73587266	73587191	ID=MsG0180004116.01.T01:exon:5313;Parent=MsG0180004116.01.T01
Chr1	exon	73587365	73587550	73587365	ID=MsG0180004116.01.T01:exon:5314;Parent=MsG0180004116.01.T01
Chr1	exon	73587685	73587752	73587685	ID=MsG0180004116.01.T01:exon:5315;Parent=MsG0180004116.01.T01
Chr1	exon	73587846	73587964	73587846	ID=MsG0180004116.01.T01:exon:5316;Parent=MsG0180004116.01.T01
Chr1	exon	73588050	73588171	73588050	ID=MsG0180004116.01.T01:exon:5317;Parent=MsG0180004116.01.T01
Chr1	exon	73588539	73588637	73588539	ID=MsG0180004116.01.T01:exon:5318;Parent=MsG0180004116.01.T01
Chr1	exon	73588756	73589235	73588756	ID=MsG0180004116.01.T01:exon:5319;Parent=MsG0180004116.01.T01
Chr1	exon	73589358	73589456	73589358	ID=MsG0180004116.01.T01:exon:5320;Parent=MsG0180004116.01.T01
Chr1	exon	73589538	73589780	73589538	ID=MsG0180004116.01.T01:exon:5321;Parent=MsG0180004116.01.T01
Chr1	exon	73592899	73593447	73592899	ID=MsG0180004116.01.T01:exon:5322;Parent=MsG0180004116.01.T01
Chr1	exon	73594431	73594685	73594431	ID=MsG0180004116.01.T01:exon:5323;Parent=MsG0180004116.01.T01
Chr1	CDS	73582868	73582904	73582868	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73584525	73584629	73584525	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73584879	73585039	73584879	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73585148	73585240	73585148	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73585697	73585882	73585697	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73585965	73586027	73585965	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73586388	73586532	73586388	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73586630	73586770	73586630	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73586994	73587090	73586994	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73587191	73587266	73587191	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73587365	73587550	73587365	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73587685	73587752	73587685	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73587846	73587964	73587846	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73588050	73588171	73588050	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73588539	73588637	73588539	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73588756	73589235	73588756	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73589358	73589456	73589358	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73589538	73589780	73589538	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73592899	73593447	73592899	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01
Chr1	CDS	73594431	73594685	73594431	ID=MsG0180004116.01.T01:cds;Parent=MsG0180004116.01.T01

Gene Sequence

>MsG0180004116.01.T01

ATGGAGAAGATCCTATCTCTTTATTTAGAAGTCAAAACTTCTGAACATGTGTTCAAAGGAATATTGACCGGTCTTCCCAAGCCTGGAGGTGGTGAATATGGAAAGTTTTTTAGTTTGCCTTCACTCAATGATTCAAGAATTGAGAGGCTGCCATACTCCATAAGGATACTTGTAGAATCTGCCATACGTAATTGTGACAACTTCAAAGTGACTCAGAATGATGTTGAAAATATTATTGATTGGGAGAACACATCTCAAAACCAAACTGAAATTCCTTTCATGCCTGCTCGTGTTCTGCTGCAGGATGCTACTGGAGTTCCTGCTCTTGTTGATTTGGCTTCTATGAGGGATGCCATGAAGAATCTTGGTGGTGATCCTAACAAGATTAGCCCTTTGGTTCCAGTGGAACTTGTTATAGATCATTCAGTTCAGGTTGATGTAGCAAGATCAAATAATGCAGTACAAGCCAATGTAGAATTTGAGTTCCAAAGGAATAAAGAAAGATTTGGTTTCCTTAAATGGGGTTCATCTGCTTTCGATAACACGCTTGTTGTTCCTCCCGGATCTGGAATAGTCCACCAGGTAAATCTAGAATACCTTGGAAGAGTAGTTTTTAACAAAGATGGCATTCTCTACCCTGACAGTCCAATGAGTATGATATTGCCTGGTGTTGTTGGATTCAAACTGTTTGGGAAATTGCATGATGTTGTCACAGCTACTGATTTGGTTTTAACTGTGACTCAAATGTTGCGGAAGCATGGTGTTGTTGGCATGTTCATTGAATTTTACGGTGAAGGCGTTGGTGAACTGTCGTTACCTGATAGGGCTACGATTGCAAACATGTGTCCAGAATATGAGGCAACAATGGCATTCTTCCCTGTAGATGATGTCACATTGGAATATCTTAGATTGACCGGAAGAAGTGGAGACAACTTCTCTGTCATCCAGGCTCACCATGAGAGAGTATACACATCTTATTTGCAGTTAGACTTGGGAGAAGTTGAATCCTGTGTTTCAGGTCCCAAAAGGCCTCATGATCGAGTTCCTTTGAAAGACATGAAGGCAGATTGGCATGCTTGTCTTGAAAACAAAGTTGGAATCAAGGGATTTGGGATATCAAAAGGAGAAAAAGATAAAGAGGTGAAGTGTTCTTTCCAAGGACATCATGCTAACCTTAAGCATGGAAGTGTTGTCATTGCAGCCATTACAAGTTGTACTAATACATCAAACCCTAGTGTAATGCTTGGTGCTGGTCTTGTTGCAAAGAAAGCCTGTGAACTAGGTTTGGAGGTCAAGCCATGGATTAAAACAAGTCTTGCTCCTGGCTCAAGGGTAGTTACCGAATATTTAATCCAGAGTGGCCTACAAAAATATCTAAATCGGCTAGGCTTTCACACGGTTGGCTATGGTTGCACAACCTGTATTGGAAATTCAGGAGAACTCGATAACTCGGTGGCATCTGCAATTTCAGAAAATGAGATTATTGCTGCATCTGTTCTTTCTGGAAATCGAAATTTTGAAGGTCGTGTTCATCCGTTAACAAGAGCAAACTACCTTGCTTCTCCGCCATTAGTTGTTGCCTATGCCCTTTCCGGCACGGTTGACATCAACTTCTATGAAGAGCCCATAGGAAGAGGAAAGAATGGAAGGGATGTGTACCTGAAAGATATCTGGCCAAGTAATGAAGAGGCCTCAAAGGCTCTTCAAACTTATGTATTGCCTGACATGTTCAAGAGCATTTATGAGACTATTACAAAGGGAAATCCTATGTGGGATAGGCTTTCAGTTCCTGCTTCAACTCTCTATTCATGGGATCCAAAATCCACCTACATTCATGAGCCTCCTTATTTTAAGAATATGACGATGAAGCCACCTGGTCTTCATAGGATAAAGGATTGTTATTGCTTGCTCAAGTTTGGAGAAGGTGTTACCACAGATCAGATTTCTCCTCCAGGGAGTATCCACAAGGATAGCCCTGCTGCAAAATACTTGATTGAGCATGGCGTAGATCACAAAGACTTCAATTCTTATGGAAGTCGTCGCGGAAATCATGAAGTTATGGTAAGAGGCACATTTGCCAATATCCGCCTTGTGAACAAACTTATGAATGGAGAAGTGGGTCCAAAAACAGTTCACATTCCAACAGGAGAAAAAATGACAGTGTATGATGCAGCAATGAGGTATAAGGAAGCTGATCAGGACACCATTATCTTGGCCGGGGCAGATTATGGAACTGGAAGCTCTCGAGATTGGGCTGCGAAGGGTCCTCTCCTACTTGGGGTGAAAGCAGTGATTGCTAAGAGCTTTGAGAGAATTCATCGCAGTAATCTTGTTGGGATGGGGATCATTCCTCTTCGCTTCAAGCCTGGTGATGATGTGGAAACACTACAATTGACAGGTCACGAGCGTTTCACGGTGGATCTTCCAGAAAAAGTTAACGACATAGAACCTGGTCAAGATGTTAATGTCACCACAGACAGTGGCAAATCATTTACATGCAAGCTTTGCCTTGATACAAGGTCGCTTTCATTATCTTCAACAGTTGTTTTTAATTTATTTATTTACAAATATGTCCGAACCCATTTGTTGTGGTCCCGGCTTTTGATTTTCCCATTCCTCGTATTTCACTATTTTACGGTTTTACCCTTCATTAAGAAAAAATCAAGAAACAACTTCAAACCCATGATGATGAGTCAGAGTCACAATCCTCACAATTCTCGTAGGATGTTGCCACCTGGCAGCAATACGAGAAAGCGCAAACATTCTGAAGCTGATAAGCTGGATAAGCCGATACCTTCCAACCGGCTTCTAGCTGGCTATCTTGCTCATGAGTTTTTGACCAAAGGGACTCTACTTGGACAGAAGTTTGATCATCGTAATCTAAACGGGACCGAAACTGATTTTGACTCTGTCGTTGGCTCAGCTGAACAGCAACGACAGAGTCAATTTTACTCGGGAGCTAAAGCCTCGGATGAAGAGTTGGGGCGAGCTGGAGTGAGAAAGGAGCATGAGACTTATGGTGAGGTGGCAAACATTGTGAAGACGGATGGGACCCACATAAAGGGAATTATTGTTCAGTTTCATCCTCAAATTGTTTTTTTTTTGTTACAAAAAAGTTTAGGTGGGTTCGGCTCCGGTCACCACCAGGGTCTGGGCACGCCTCCGGGCCCAAAGGGCACTTATAGAGGTATTTACAGATCACCCACCAACACTGCCCTCACATCGGCAGAGGGAATCGAACACACAACCTTCTGCAAGGAAGTGACCCGTTCCTTACCAACTGAGCTAACGTGTGTTGGTTCATCCTCAAATTGTTTGAAATAG

Protein sequence

>MsG0180004116.01.T01

MEKILSLYLEVKTSEHVFKGILTGLPKPGGGEYGKFFSLPSLNDSRIERLPYSIRILVESAIRNCDNFKVTQNDVENIIDWENTSQNQTEIPFMPARVLLQDATGVPALVDLASMRDAMKNLGGDPNKISPLVPVELVIDHSVQVDVARSNNAVQANVEFEFQRNKERFGFLKWGSSAFDNTLVVPPGSGIVHQVNLEYLGRVVFNKDGILYPDSPMSMILPGVVGFKLFGKLHDVVTATDLVLTVTQMLRKHGVVGMFIEFYGEGVGELSLPDRATIANMCPEYEATMAFFPVDDVTLEYLRLTGRSGDNFSVIQAHHERVYTSYLQLDLGEVESCVSGPKRPHDRVPLKDMKADWHACLENKVGIKGFGISKGEKDKEVKCSFQGHHANLKHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLEVKPWIKTSLAPGSRVVTEYLIQSGLQKYLNRLGFHTVGYGCTTCIGNSGELDNSVASAISENEIIAASVLSGNRNFEGRVHPLTRANYLASPPLVVAYALSGTVDINFYEEPIGRGKNGRDVYLKDIWPSNEEASKALQTYVLPDMFKSIYETITKGNPMWDRLSVPASTLYSWDPKSTYIHEPPYFKNMTMKPPGLHRIKDCYCLLKFGEGVTTDQISPPGSIHKDSPAAKYLIEHGVDHKDFNSYGSRRGNHEVMVRGTFANIRLVNKLMNGEVGPKTVHIPTGEKMTVYDAAMRYKEADQDTIILAGADYGTGSSRDWAAKGPLLLGVKAVIAKSFERIHRSNLVGMGIIPLRFKPGDDVETLQLTGHERFTVDLPEKVNDIEPGQDVNVTTDSGKSFTCKLCLDTRSLSLSSTVVFNLFIYKYVRTHLLWSRLLIFPFLVFHYFTVLPFIKKKSRNNFKPMMMSQSHNPHNSRRMLPPGSNTRKRKHSEADKLDKPIPSNRLLAGYLAHEFLTKGTLLGQKFDHRNLNGTETDFDSVVGSAEQQRQSQFYSGAKASDEELGRAGVRKEHETYGEVANIVKTDGTHIKGIIVQFHPQIVFFLLQKSLGGFGSGHHQGLGTPPGPKGTYRGIYRSPTNTALTSAEGIEHTTFCKEVTRSLPTELTCVGSSSNCLK*