AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041614.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041614.01.T01 MTR_7g114470 94.372 462 25 1 1 461 1 462 0.0 914
MsG0780041614.01.T01 MTR_5g076700 87.146 459 59 0 3 461 2 460 0.0 852
MsG0780041614.01.T01 MTR_7g114560 77.996 459 100 1 3 461 2 459 0.0 765
MsG0780041614.01.T01 MTR_7g114550 76.790 461 105 2 1 461 1 459 0.0 755
MsG0780041614.01.T01 MTR_7g114520 75.541 462 112 1 1 461 1 462 0.0 739
MsG0780041614.01.T01 MTR_7g114490 76.443 433 101 1 3 435 2 433 0.0 712
MsG0780041614.01.T01 MTR_1g040195 57.516 459 164 6 7 461 5 436 0.0 530
MsG0780041614.01.T01 MTR_7g114420 81.356 295 28 1 167 461 1 268 4.81e-178 499
MsG0780041614.01.T01 MTR_1g040215 53.896 462 201 8 7 461 5 461 9.82e-178 506
MsG0780041614.01.T01 MTR_1g040175 54.248 459 201 6 7 461 5 458 5.24e-177 504
MsG0780041614.01.T01 MTR_1g081660 56.858 452 180 7 3 447 9 452 2.12e-175 499
MsG0780041614.01.T01 MTR_7g114510 70.701 314 92 0 148 461 7 320 1.01e-165 469
MsG0780041614.01.T01 MTR_1g040320 51.982 454 174 7 7 456 5 418 3.21e-162 465
MsG0780041614.01.T01 MTR_1g040315 51.092 458 176 7 7 461 5 417 2.55e-153 442
MsG0780041614.01.T01 MTR_0042s0190 51.916 287 132 5 167 450 1 284 4.49e-97 294
MsG0780041614.01.T01 MTR_0502s0010 54.918 244 102 4 102 342 1 239 1.27e-84 260
MsG0780041614.01.T01 MTR_7g114500 79.470 151 31 0 3 153 2 152 2.61e-83 253
MsG0780041614.01.T01 MTR_8g096530 35.733 389 236 8 9 392 5 384 9.60e-81 257
MsG0780041614.01.T01 MTR_3g098980 33.411 428 269 8 11 435 14 428 2.23e-79 253
MsG0780041614.01.T01 MTR_7g027175 35.052 388 238 8 14 396 19 397 2.38e-76 245
MsG0780041614.01.T01 MTR_0042s0190 52.727 220 100 4 234 450 1 219 7.71e-74 232
MsG0780041614.01.T01 MTR_3g051790 72.483 149 41 0 1 149 3 151 2.70e-73 229
MsG0780041614.01.T01 MTR_0042s0230 64.336 143 51 0 7 149 5 147 1.44e-64 205
MsG0780041614.01.T01 MTR_1g053315 30.505 436 284 12 19 439 26 457 3.20e-59 201
MsG0780041614.01.T01 MTR_8g039950 63.780 127 46 0 4 130 2 128 3.69e-57 185
MsG0780041614.01.T01 MTR_3g112180 31.378 392 243 11 21 400 22 399 6.70e-56 192
MsG0780041614.01.T01 MTR_2g105330 29.464 448 288 14 7 442 1 432 4.29e-55 189
MsG0780041614.01.T01 MTR_2g064495 29.241 448 289 14 7 442 1 432 5.61e-54 187
MsG0780041614.01.T01 MTR_4g055170 30.493 446 274 16 18 439 19 452 4.57e-52 182
MsG0780041614.01.T01 MTR_4g007540 29.356 419 258 14 43 442 34 433 1.02e-50 178
MsG0780041614.01.T01 MTR_8g075610 27.970 404 266 11 46 439 28 416 9.46e-46 164
MsG0780041614.01.T01 MTR_3g071320 29.500 400 262 10 10 396 4 396 4.58e-45 163
MsG0780041614.01.T01 MTR_2g015430 31.778 343 221 7 56 391 48 384 1.30e-43 159
MsG0780041614.01.T01 MTR_7g110610 27.696 408 215 11 7 400 1 342 6.26e-41 150
MsG0780041614.01.T01 MTR_3g035000 40.496 242 108 8 201 434 43 256 7.34e-41 148
MsG0780041614.01.T01 MTR_7g085930 27.952 415 253 13 18 394 13 419 1.47e-38 146
MsG0780041614.01.T01 MTR_7g085990 28.434 415 253 15 17 394 8 415 1.71e-38 145
MsG0780041614.01.T01 MTR_4g127650 27.938 451 279 14 19 439 18 452 3.08e-38 145
MsG0780041614.01.T01 MTR_7g084940 26.768 396 274 10 4 392 8 394 7.16e-38 143
MsG0780041614.01.T01 MTR_3g026950 25.747 435 258 12 19 415 10 417 3.05e-37 142
MsG0780041614.01.T01 MTR_7g084910 27.689 437 276 15 5 429 9 417 3.46e-37 141
MsG0780041614.01.T01 MTR_3g465930 27.342 395 260 12 18 391 17 405 8.96e-37 141
MsG0780041614.01.T01 MTR_4g097090 27.294 436 267 14 37 439 34 452 2.00e-36 140
MsG0780041614.01.T01 MTR_7g086000 24.894 470 287 18 19 443 12 460 1.85e-34 134
MsG0780041614.01.T01 MTR_3g465990 27.342 395 256 12 18 391 17 401 5.79e-34 133
MsG0780041614.01.T01 MTR_3g465980 27.848 395 254 12 18 391 17 401 5.53e-33 130
MsG0780041614.01.T01 MTR_3g049150 25.310 403 265 11 19 394 10 403 7.31e-33 130
MsG0780041614.01.T01 MTR_6g053810 27.723 404 249 15 65 439 70 459 1.08e-32 129
MsG0780041614.01.T01 MTR_3g465910 26.683 401 270 12 9 391 8 402 2.15e-32 129
MsG0780041614.01.T01 MTR_3g465880 27.983 461 277 18 18 439 17 461 2.33e-30 123
MsG0780041614.01.T01 MTR_5g090810 25.891 421 262 14 9 393 8 414 6.23e-30 122
MsG0780041614.01.T01 MTR_3g051820 66.304 92 29 2 371 461 1 91 5.38e-29 109
MsG0780041614.01.T01 MTR_5g090830 25.891 421 262 14 9 393 8 414 6.75e-29 119
MsG0780041614.01.T01 MTR_7g056087 25.000 444 288 14 18 437 11 433 9.97e-29 118
MsG0780041614.01.T01 MTR_3g465950 29.730 296 183 9 61 341 63 348 1.54e-27 114
MsG0780041614.01.T01 MTR_5g090880 26.277 411 252 16 63 438 64 458 3.91e-25 108
MsG0780041614.01.T01 MTR_3g070170 24.299 428 256 12 54 435 54 459 1.42e-24 106
MsG0780041614.01.T01 MTR_3g101960 26.097 433 269 16 25 432 30 436 4.54e-24 104
MsG0780041614.01.T01 MTR_5g026320 24.826 431 274 15 24 430 33 437 6.23e-24 104
MsG0780041614.01.T01 MTR_3g102020 26.526 426 275 17 26 432 31 437 8.83e-24 103
MsG0780041614.01.T01 MTR_3g101900 25.990 404 247 16 66 442 66 444 1.51e-22 100
MsG0780041614.01.T01 MTR_7g114417 70.149 67 16 2 79 144 20 83 1.64e-22 91.7
MsG0780041614.01.T01 MTR_7g114417 83.721 43 6 1 1 43 1 42 2.34e-14 68.6
MsG0780041614.01.T01 MTR_4g013050 33.735 166 96 5 19 180 12 167 5.87e-22 98.2
MsG0780041614.01.T01 MTR_3g450710 23.404 423 253 14 44 428 43 432 7.98e-22 98.2
MsG0780041614.01.T01 MTR_8g041770 24.812 399 263 13 25 405 31 410 3.35e-21 96.3
MsG0780041614.01.T01 MTR_3g086020 23.756 442 274 19 17 439 11 408 3.87e-21 95.5
MsG0780041614.01.T01 MTR_3g088420 24.594 431 258 19 25 428 25 415 5.89e-21 95.1
MsG0780041614.01.T01 MTR_3g465870 28.070 285 181 12 18 286 19 295 9.82e-21 94.7
MsG0780041614.01.T01 MTR_3g450690 23.192 401 240 13 63 428 69 436 1.35e-20 94.4
MsG0780041614.01.T01 MTR_3g102010 24.885 434 271 16 26 432 32 437 1.70e-20 94.0
MsG0780041614.01.T01 MTR_3g101930 25.558 403 243 18 38 405 44 424 1.76e-20 94.0
MsG0780041614.01.T01 MTR_5g084870 24.201 438 258 21 17 422 9 404 4.74e-20 92.8
MsG0780041614.01.T01 MTR_3g101970 24.943 437 282 15 25 446 30 435 6.88e-20 92.0
MsG0780041614.01.T01 MTR_4g022825 24.480 433 263 19 25 428 25 422 2.87e-19 90.1
MsG0780041614.01.T01 MTR_4g094842 24.582 419 249 16 25 405 28 417 1.44e-18 88.2
MsG0780041614.01.T01 MTR_4g088765 45.333 75 41 0 4 78 2 76 8.01e-18 79.7
MsG0780041614.01.T01 MTR_4g022720 23.218 435 271 16 25 433 25 422 1.20e-17 85.5
MsG0780041614.01.T01 MTR_1g094790 24.221 417 255 16 17 399 9 398 4.28e-17 83.6
MsG0780041614.01.T01 MTR_8g079710 23.721 430 270 19 25 428 30 427 4.85e-17 83.6
MsG0780041614.01.T01 MTR_4g094835 22.573 412 261 17 25 406 33 416 3.43e-15 77.8
MsG0780041614.01.T01 MTR_8g467580 23.716 409 262 19 17 399 9 393 4.01e-15 77.8
MsG0780041614.01.T01 MTR_4g022290 22.943 401 255 15 25 401 31 401 1.81e-14 75.5
MsG0780041614.01.T01 MTR_0190s0020 22.406 424 284 15 25 430 30 426 1.81e-14 75.5
MsG0780041614.01.T01 MTR_3g028210 22.222 432 273 15 46 435 46 456 1.63e-13 72.8
MsG0780041614.01.T01 MTR_4g094832 24.859 354 223 15 96 430 85 414 4.79e-13 71.2
MsG0780041614.01.T01 MTR_6g016815 29.452 146 92 6 61 198 64 206 4.93e-12 67.8
MsG0780041614.01.T01 MTR_5g084900 23.387 372 223 15 63 422 6 327 5.31e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041614.01.T01 AT5G17540 48.387 465 228 8 4 461 2 461 1.04e-148 432
MsG0780041614.01.T01 AT3G03480 47.427 447 225 7 2 444 10 450 4.31e-138 404
MsG0780041614.01.T01 AT3G48720 32.581 399 257 8 1 396 1 390 1.35e-75 243
MsG0780041614.01.T01 AT5G41040 35.190 395 236 8 11 396 33 416 1.42e-75 244
MsG0780041614.01.T01 AT5G41040 35.190 395 236 8 11 396 17 400 1.50e-75 243
MsG0780041614.01.T01 AT5G63560 35.533 394 230 9 11 396 9 386 1.80e-74 240
MsG0780041614.01.T01 AT1G27620 30.070 429 274 10 14 435 12 421 1.26e-58 199
MsG0780041614.01.T01 AT1G03390 29.978 447 289 14 9 441 23 459 8.67e-56 192
MsG0780041614.01.T01 AT5G48930 28.670 436 282 13 18 439 10 430 7.06e-49 173
MsG0780041614.01.T01 AT2G19070 29.630 459 278 14 10 439 5 447 1.14e-46 167
MsG0780041614.01.T01 AT3G62160 29.703 404 248 11 7 398 1 380 4.04e-46 166
MsG0780041614.01.T01 AT2G40230 29.250 400 257 12 11 396 5 392 3.78e-44 160
MsG0780041614.01.T01 AT5G57840 27.609 460 284 16 11 444 3 439 2.66e-42 155
MsG0780041614.01.T01 AT1G28680 30.189 371 238 12 32 391 27 387 1.12e-41 154
MsG0780041614.01.T01 AT5G07080 29.854 412 254 13 1 391 6 403 2.26e-41 153
MsG0780041614.01.T01 AT1G65450 27.412 456 301 15 4 443 8 449 1.18e-40 151
MsG0780041614.01.T01 AT3G47170 27.521 476 285 17 9 443 10 466 3.74e-39 147
MsG0780041614.01.T01 AT1G28680 29.891 368 230 13 32 381 27 384 5.11e-38 143
MsG0780041614.01.T01 AT2G25150 28.330 473 276 17 6 442 7 452 2.38e-35 137
MsG0780041614.01.T01 AT2G23510 28.916 415 246 17 3 391 7 398 2.42e-34 134
MsG0780041614.01.T01 AT1G31490 23.775 408 265 14 8 393 3 386 5.70e-26 110
MsG0780041614.01.T01 AT4G31910 26.226 469 300 20 6 441 2 457 1.43e-25 109
MsG0780041614.01.T01 AT5G42830 27.982 436 265 19 21 433 27 436 1.82e-25 108
MsG0780041614.01.T01 AT4G15390 25.225 444 278 20 17 435 14 428 1.98e-25 108
MsG0780041614.01.T01 AT4G15390 25.225 444 278 20 17 435 14 428 1.98e-25 108
MsG0780041614.01.T01 AT5G07860 25.570 395 243 15 63 433 69 436 6.95e-23 101
MsG0780041614.01.T01 AT3G50280 25.862 406 255 16 25 409 28 408 2.05e-22 99.8
MsG0780041614.01.T01 AT3G50270 25.121 414 267 13 25 417 30 421 3.86e-22 99.0
MsG0780041614.01.T01 AT3G26040 23.457 405 253 15 17 394 9 383 7.38e-22 98.2
MsG0780041614.01.T01 AT1G24430 25.629 437 274 18 17 435 11 414 8.35e-22 97.8
MsG0780041614.01.T01 AT1G78990 24.528 371 244 11 44 394 45 399 4.61e-21 95.9
MsG0780041614.01.T01 AT5G38130 25.679 405 257 15 25 410 48 427 4.69e-21 95.9
MsG0780041614.01.T01 AT5G07850 24.276 449 268 19 21 433 28 440 1.09e-20 94.7
MsG0780041614.01.T01 AT1G24420 25.390 449 264 18 17 435 11 418 1.28e-20 94.4
MsG0780041614.01.T01 AT1G24420 25.390 449 264 18 17 435 11 418 1.28e-20 94.4
MsG0780041614.01.T01 AT3G30280 24.208 442 278 19 17 432 12 422 1.08e-19 91.7
MsG0780041614.01.T01 AT1G32910 23.077 390 249 12 64 431 63 423 1.64e-19 91.3
MsG0780041614.01.T01 AT5G47980 25.670 448 277 18 15 436 9 426 2.55e-19 90.5
MsG0780041614.01.T01 AT1G65450 25.676 296 198 10 159 443 1 285 2.97e-19 88.2
MsG0780041614.01.T01 AT2G39980 23.628 419 254 12 66 432 62 466 7.06e-19 89.4
MsG0780041614.01.T01 AT5G23970 25.901 444 262 19 17 435 9 410 4.36e-18 86.7
MsG0780041614.01.T01 AT5G47950 23.678 435 272 19 17 432 12 405 1.22e-17 85.1
MsG0780041614.01.T01 AT5G16410 23.410 346 234 12 66 394 91 422 2.46e-17 84.7
MsG0780041614.01.T01 AT3G50300 23.784 370 244 12 63 410 56 409 9.03e-16 79.7
MsG0780041614.01.T01 AT4G15400 26.577 444 270 20 17 438 11 420 2.08e-15 78.6
MsG0780041614.01.T01 AT5G23940 24.331 411 265 16 53 437 53 443 1.66e-14 75.9
MsG0780041614.01.T01 AT3G50280 24.113 282 189 10 140 409 10 278 1.22e-12 68.9

Find 137 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACACTTCTTAACTCTATT+TGG 0.145351 7:+93066942 MsG0780041614.01.T01:five_prime_UTR
ATCTTATCACTGCATGTTAT+TGG 0.178748 7:+93068765 MsG0780041614.01.T01:CDS
CACTCCTTGTAGGATGATTT+TGG 0.205974 7:-93069309 None:intergenic
TCTTCCTTGATGTACGTATT+TGG 0.224399 7:-93068638 None:intergenic
GATATAACACTTGATCAATT+TGG 0.295091 7:+93067318 MsG0780041614.01.T01:CDS
TTGTTGCTTGTCGGATATTA+TGG 0.296854 7:+93068881 MsG0780041614.01.T01:CDS
GCATGTTTAAGAACCTTAAC+AGG 0.298889 7:-93067177 None:intergenic
ACAAACCTCTTCATATCTTC+AGG 0.311975 7:-93069259 None:intergenic
AACTCAACTGCATAACCTAA+TGG 0.312827 7:-93068959 None:intergenic
GGGTCTTTCTCTTTCATTGA+TGG 0.316385 7:-93067156 None:intergenic
CCATTCAACCTGTATGGAAT+AGG 0.323735 7:+93068546 MsG0780041614.01.T01:CDS
GAACATCGTATAGAATTTCT+TGG 0.334851 7:-93067371 None:intergenic
CTGCCGCACAAAAGCATTGC+AGG 0.340219 7:+93068790 MsG0780041614.01.T01:CDS
TGGTAATTGTATTGCTTTCT+CGG 0.356387 7:+93068901 MsG0780041614.01.T01:CDS
AGAGGAGTACATGCATTCTT+TGG 0.363021 7:+93069009 MsG0780041614.01.T01:CDS
ATCCAGCTGCAGGAAGGATT+AGG 0.365308 7:+93067226 MsG0780041614.01.T01:CDS
ATCACAAGCTACAAACTATA+AGG 0.369159 7:-93069353 None:intergenic
GAGCTTTGTGGAAACCCATT+AGG 0.375078 7:+93068944 MsG0780041614.01.T01:CDS
CGTGACTGCATGGGCAGAAA+TGG 0.385863 7:+93068502 MsG0780041614.01.T01:CDS
AAGTTCTCAGAAGTAAATTT+CGG 0.389814 7:+93069109 MsG0780041614.01.T01:CDS
TCCAGCTGCAGGAAGGATTA+GGG 0.391602 7:+93067227 MsG0780041614.01.T01:CDS
AACAAATGAGAAAAGATTAG+AGG 0.400929 7:-93069532 None:intergenic
TCCCTAATCCTTCCTGCAGC+TGG 0.402307 7:-93067228 None:intergenic
AAACTAGGAGCACTCCTTGT+AGG 0.407155 7:-93069319 None:intergenic
CATTCAACCTGTATGGAATA+GGG 0.408225 7:+93068547 MsG0780041614.01.T01:CDS
GCTAACCCTTTGTTGCTTGT+CGG 0.409807 7:+93068872 MsG0780041614.01.T01:CDS
GTGTATGGTGGAGCAGTAAA+AGG 0.414611 7:+93069145 MsG0780041614.01.T01:CDS
GGAGCAGTAAAAGGTGGAAT+TGG 0.418235 7:+93069154 MsG0780041614.01.T01:CDS
GGGTGCTGGGCGAAAGTTGA+TGG 0.420210 7:+93067251 MsG0780041614.01.T01:CDS
GGGTGTGGATAGGGTTGATG+GGG 0.421250 7:+93069505 MsG0780041614.01.T01:three_prime_UTR
AACCTTCCATTCAACCTGTA+TGG 0.427456 7:+93068540 MsG0780041614.01.T01:CDS
TCATGAGGAGTGGGTGCAGC+TGG 0.430177 7:-93067054 None:intergenic
CAGCTCCATCGCCCATTGTA+TGG 0.433098 7:-93068466 None:intergenic
GGAAGGATTAGGGAGGGTGC+TGG 0.433324 7:+93067237 MsG0780041614.01.T01:CDS
ACTCAACTGCATAACCTAAT+GGG 0.436624 7:-93068958 None:intergenic
GAAAGATGTTTATTTACAAA+GGG 0.441292 7:+93069052 MsG0780041614.01.T01:CDS
GAAATTCTATACGATGTTCC+AGG 0.443086 7:+93067375 MsG0780041614.01.T01:CDS
CTGTGAAGAAGAAAGATTGA+TGG 0.446115 7:-93068679 None:intergenic
GGAAAGATGTTTATTTACAA+AGG 0.447433 7:+93069051 MsG0780041614.01.T01:CDS
GGGGTGTGGATAGGGTTGAT+GGG 0.450217 7:+93069504 MsG0780041614.01.T01:three_prime_UTR
CCTATTCCATACAGGTTGAA+TGG 0.453015 7:-93068546 None:intergenic
GGTGTGGATAGGGTTGATGG+GGG 0.455438 7:+93069506 MsG0780041614.01.T01:three_prime_UTR
AATAAATAAATATGAAAAGT+AGG 0.456096 7:+93069465 MsG0780041614.01.T01:three_prime_UTR
ATCATTCGTACCTCTTCATC+TGG 0.459290 7:-93068818 None:intergenic
AAGAATGCAAAAGGAGAAGA+AGG 0.460427 7:+93069211 MsG0780041614.01.T01:CDS
CATAGCCGCGATTCGTCGCC+TGG 0.474719 7:+93068709 MsG0780041614.01.T01:CDS
TACAAAGGGAAGAACTTGTA+TGG 0.478317 7:+93069066 MsG0780041614.01.T01:CDS
AGAATCTCCCTATTCCATAC+AGG 0.480630 7:-93068554 None:intergenic
ATGGTGGATTGCACTGGGGA+GGG 0.483447 7:+93067270 MsG0780041614.01.T01:CDS
CAAACCTCTTCATATCTTCA+GGG 0.484202 7:-93069258 None:intergenic
GCATCGTTAATGCACGTTCG+AGG 0.486409 7:+93068843 MsG0780041614.01.T01:CDS
TCAATAATATATTCTGATCC+TGG 0.488870 7:-93067393 None:intergenic
TCCTTGATGTACGTATTTGG+CGG 0.490692 7:-93068635 None:intergenic
AAGACCTGTATGAGTCGAAC+GGG 0.490760 7:-93067420 None:intergenic
CAAGTGTGGTGGTTTCATAA+TGG 0.491746 7:+93068430 MsG0780041614.01.T01:CDS
GAACTTGTATGGTGTCAGAT+TGG 0.493406 7:+93069077 MsG0780041614.01.T01:CDS
GTTTATTACTATCCAGCTGC+AGG 0.495084 7:+93067216 MsG0780041614.01.T01:CDS
TGAATCATTTATATATCAAT+CGG 0.496551 7:-93069379 None:intergenic
TGGAAGTACCAACTCTGGTT+GGG 0.497528 7:-93067034 None:intergenic
GGATGGGGTGAAGCTGTGTA+TGG 0.499977 7:+93069130 MsG0780041614.01.T01:CDS
ATGGAATAGGGAGATTCTAA+TGG 0.500842 7:+93068559 MsG0780041614.01.T01:CDS
GAGAAAGGTGAAGTGGAACC+AGG 0.501342 7:-93068727 None:intergenic
GTCCCGCATAAGAATGCAAA+AGG 0.502043 7:+93069202 MsG0780041614.01.T01:CDS
CATACAATGGGCGATGGAGC+TGG 0.513365 7:+93068467 MsG0780041614.01.T01:CDS
ATTTCTTGGAAGCAAGGGAA+TGG 0.515708 7:-93067357 None:intergenic
GATGGTGGATTGCACTGGGG+AGG 0.517131 7:+93067269 MsG0780041614.01.T01:CDS
CTGGAAGTACCAACTCTGGT+TGG 0.519392 7:-93067035 None:intergenic
TATAGAATTTCTTGGAAGCA+AGG 0.520340 7:-93067363 None:intergenic
TTCCATACAGGTTGAATGGA+AGG 0.520405 7:-93068542 None:intergenic
GAAGGATTAGGGAGGGTGCT+GGG 0.522109 7:+93067238 MsG0780041614.01.T01:CDS
CGTATGCAGTGCATTGAGAA+AGG 0.526515 7:-93068742 None:intergenic
ATTCTTATGCGGGACAAGAA+AGG 0.526948 7:-93069194 None:intergenic
AGTTTAACTTCATGAGGAGT+GGG 0.527780 7:-93067063 None:intergenic
AAGTTGATGGTGGATTGCAC+TGG 0.528428 7:+93067264 MsG0780041614.01.T01:CDS
GAAAGAGAAAGACCCTGTTA+AGG 0.531454 7:+93067164 MsG0780041614.01.T01:CDS
GGTTGCAAGTAACGTGTGGC+GGG 0.531576 7:-93068589 None:intergenic
CCGTCCCGTTCGACTCATAC+AGG 0.533062 7:+93067416 MsG0780041614.01.T01:CDS
CTCCGCACTGTGAACAATAG+TGG 0.533503 7:-93067009 None:intergenic
CTCAGAAGTAAATTTCGGAT+GGG 0.534991 7:+93069114 MsG0780041614.01.T01:CDS
TCTCAGAAGTAAATTTCGGA+TGG 0.535849 7:+93069113 MsG0780041614.01.T01:CDS
TGAGACAATTCGTGACTGCA+TGG 0.535891 7:+93068492 MsG0780041614.01.T01:CDS
AAAGAGCTAAATGATATGCT+TGG 0.536007 7:+93069283 MsG0780041614.01.T01:CDS
TTGAGCTTGAACCATACAAT+GGG 0.537449 7:+93068455 MsG0780041614.01.T01:CDS
ACCACTGCAAAGGAGCTTTG+TGG 0.545376 7:+93068932 MsG0780041614.01.T01:CDS
CCGCACAAAAGCATTGCAGG+TGG 0.552363 7:+93068793 MsG0780041614.01.T01:CDS
GAGACAATTCGTGACTGCAT+GGG 0.553285 7:+93068493 MsG0780041614.01.T01:CDS
ATGTGTGTGCAATAATGAAA+AGG 0.554289 7:+93069431 MsG0780041614.01.T01:three_prime_UTR
AATATCCGACAAGCAACAAA+GGG 0.562922 7:-93068877 None:intergenic
GAGTTTAACTTCATGAGGAG+TGG 0.565045 7:-93067064 None:intergenic
TGGAACCAGGCGACGAATCG+CGG 0.566895 7:-93068714 None:intergenic
ATTGTGATAATTTACTTGTG+TGG 0.567119 7:+93069555 MsG0780041614.01.T01:three_prime_UTR
TCCACAAAGCTCCTTTGCAG+TGG 0.567433 7:-93068933 None:intergenic
CATTGTATGGTTCAAGCTCA+AGG 0.569460 7:-93068453 None:intergenic
AAGGTAGACAAGATGAAACT+AGG 0.571958 7:-93069334 None:intergenic
ATAGAATTTCTTGGAAGCAA+GGG 0.573708 7:-93067362 None:intergenic
GGCAGCAGTCACCACTGCAA+AGG 0.576150 7:+93068922 MsG0780041614.01.T01:CDS
TCAGAAGTAAATTTCGGATG+GGG 0.577426 7:+93069115 MsG0780041614.01.T01:CDS
GCAGCTGGAAGTACCAACTC+TGG 0.584510 7:-93067039 None:intergenic
CTTGAGCTTGAACCATACAA+TGG 0.589328 7:+93068454 MsG0780041614.01.T01:CDS
AGCAAAAGCTCAAGTTACAG+AGG 0.589925 7:+93068991 MsG0780041614.01.T01:CDS
TAATATCCGACAAGCAACAA+AGG 0.591430 7:-93068878 None:intergenic
GCAGGTGGAGCCAGATGAAG+AGG 0.592868 7:+93068808 MsG0780041614.01.T01:CDS
TCTTGGAAGCAAGGGAATGG+AGG 0.599063 7:-93067354 None:intergenic
AGTTGATGGTGGATTGCACT+GGG 0.599197 7:+93067265 MsG0780041614.01.T01:CDS
GAGAGGAGTTTAACTTCATG+AGG 0.599961 7:-93067069 None:intergenic
TGGGGTGAAGCTGTGTATGG+TGG 0.601746 7:+93069133 MsG0780041614.01.T01:CDS
TGACGAAAGACAAATATGAC+AGG 0.607837 7:-93067129 None:intergenic
ATTACTATCCAGCTGCAGGA+AGG 0.614273 7:+93067220 MsG0780041614.01.T01:CDS
GCGGAGGTCCCAACCAGAGT+TGG 0.615833 7:+93067026 MsG0780041614.01.T01:CDS
TGACAGGAAGATTGAAACGA+AGG 0.615959 7:-93067113 None:intergenic
TAAGACCTGTATGAGTCGAA+CGG 0.619194 7:-93067421 None:intergenic
GTGCATTGAGAAAGGTGAAG+TGG 0.620215 7:-93068734 None:intergenic
TCCGCCAAATACGTACATCA+AGG 0.620796 7:+93068634 MsG0780041614.01.T01:CDS
GCCTTCTTGATCATCTATGT+CGG 0.622425 7:-93067091 None:intergenic
GTAACCAAAATCATCCTACA+AGG 0.623110 7:+93069305 MsG0780041614.01.T01:CDS
TGGTTGCAAGTAACGTGTGG+CGG 0.626899 7:-93068590 None:intergenic
TTGAACCATACAATGGGCGA+TGG 0.631288 7:+93068461 MsG0780041614.01.T01:CDS
TGCTGGGCGAAAGTTGATGG+TGG 0.635555 7:+93067254 MsG0780041614.01.T01:CDS
CCTGTATGAGTCGAACGGGA+CGG 0.638129 7:-93067416 None:intergenic
GTGTGCAATAATGAAAAGGA+AGG 0.644525 7:+93069435 MsG0780041614.01.T01:three_prime_UTR
TCCGACATAGATGATCAAGA+AGG 0.646509 7:+93067090 MsG0780041614.01.T01:CDS
AAACCTCTTCATATCTTCAG+GGG 0.652653 7:-93069257 None:intergenic
TATGGTGGAGCAGTAAAAGG+TGG 0.653295 7:+93069148 MsG0780041614.01.T01:CDS
CATGTTTAAGAACCTTAACA+GGG 0.656931 7:-93067176 None:intergenic
AGCTGCAGGAAGGATTAGGG+AGG 0.663235 7:+93067230 MsG0780041614.01.T01:CDS
AGAATGCAAAAGGAGAAGAA+GGG 0.663405 7:+93069212 MsG0780041614.01.T01:CDS
GTTACACGTCTCAAGTGTGG+TGG 0.666120 7:+93068419 MsG0780041614.01.T01:CDS
AACCTCTTCATATCTTCAGG+GGG 0.666136 7:-93069256 None:intergenic
CAGGTTACACGTCTCAAGTG+TGG 0.668116 7:+93068416 MsG0780041614.01.T01:intron
CGATGGTTGCAAGTAACGTG+TGG 0.669479 7:-93068593 None:intergenic
GTATTTGTTCGTATTCACGA+TGG 0.674672 7:-93068610 None:intergenic
CTTGATCATCTATGTCGGAG+AGG 0.675142 7:-93067086 None:intergenic
CACTATTGTTCACAGTGCGG+AGG 0.677341 7:+93067010 MsG0780041614.01.T01:CDS
GCATGGGCAGAAATGGCTCG+AGG 0.681407 7:+93068509 MsG0780041614.01.T01:CDS
GCTGCAGGAAGGATTAGGGA+GGG 0.683826 7:+93067231 MsG0780041614.01.T01:CDS
CACCACTATTGTTCACAGTG+CGG 0.732056 7:+93067007 MsG0780041614.01.T01:CDS
GTTGATGGTGGATTGCACTG+GGG 0.762765 7:+93067266 MsG0780041614.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATATGAAAAGT+AGG + Chr7:93069465-93069484 MsG0780041614.01.T01:three_prime_UTR 10.0%
!! AGTAATTAATATAAATTCAT+AGG - Chr7:93067899-93067918 None:intergenic 10.0%
!! AAATAATTGCATTATATAAG+TGG - Chr7:93067842-93067861 None:intergenic 15.0%
!! TGAATCATTTATATATCAAT+CGG - Chr7:93069382-93069401 None:intergenic 15.0%
!!! TATATAATTTATTTGTTGTG+TGG - Chr7:93067666-93067685 None:intergenic 15.0%
!! ACTTAAAAATAGTGTAAAGT+TGG - Chr7:93068109-93068128 None:intergenic 20.0%
!! GAAAGATGTTTATTTACAAA+GGG + Chr7:93069052-93069071 MsG0780041614.01.T01:CDS 20.0%
!! GATAATTAGAATTAAATGAC+AGG + Chr7:93068397-93068416 MsG0780041614.01.T01:intron 20.0%
!! TAACATATACATACATCTTT+AGG + Chr7:93068364-93068383 MsG0780041614.01.T01:intron 20.0%
!! TTAGAAAAAAACGTACATTA+AGG + Chr7:93068254-93068273 MsG0780041614.01.T01:intron 20.0%
!! TTTATCCCAAAAAAAAATGA+GGG - Chr7:93068056-93068075 None:intergenic 20.0%
!!! TACCATTTTTCGTAAAAAAT+TGG - Chr7:93068081-93068100 None:intergenic 20.0%
!!! TTTATTCCAAGTCTAAAATT+CGG - Chr7:93067597-93067616 None:intergenic 20.0%
!!! TTTTATCCCAAAAAAAAATG+AGG - Chr7:93068057-93068076 None:intergenic 20.0%
! AAAATGATTGTAATGAGATC+AGG + Chr7:93067528-93067547 MsG0780041614.01.T01:intron 25.0%
! AAATGATTGTAATGAGATCA+GGG + Chr7:93067529-93067548 MsG0780041614.01.T01:intron 25.0%
! AACAAATGAGAAAAGATTAG+AGG - Chr7:93069535-93069554 None:intergenic 25.0%
! AAGAGACCTATAAAATTTCA+AGG - Chr7:93067465-93067484 None:intergenic 25.0%
! AAGTTCTCAGAAGTAAATTT+CGG + Chr7:93069109-93069128 MsG0780041614.01.T01:CDS 25.0%
! ATTTCACATTAAATATGCCT+TGG - Chr7:93068211-93068230 None:intergenic 25.0%
! GATATAACACTTGATCAATT+TGG + Chr7:93067318-93067337 MsG0780041614.01.T01:CDS 25.0%
! GGAAAGATGTTTATTTACAA+AGG + Chr7:93069051-93069070 MsG0780041614.01.T01:CDS 25.0%
! TCAATAATATATTCTGATCC+TGG - Chr7:93067396-93067415 None:intergenic 25.0%
! TCATGCTATCATAAAAAAGA+AGG - Chr7:93066978-93066997 None:intergenic 25.0%
! TTATCCCAAAAAAAAATGAG+GGG - Chr7:93068055-93068074 None:intergenic 25.0%
! TTTCACATTAAATATGCCTT+GGG - Chr7:93068210-93068229 None:intergenic 25.0%
!! AGTAGGTCTATTTTCTTATT+TGG + Chr7:93069482-93069501 MsG0780041614.01.T01:three_prime_UTR 25.0%
!! ATTATCATGCATTAACTTGA+TGG - Chr7:93068001-93068020 None:intergenic 25.0%
!! GAATTTTAGACTTGGAATAA+AGG + Chr7:93067596-93067615 MsG0780041614.01.T01:intron 25.0%
!! TCACATCCTTGAAATTTTAT+AGG + Chr7:93067456-93067475 MsG0780041614.01.T01:intron 25.0%
!! TGATCTCATTACAATCATTT+TGG - Chr7:93067529-93067548 None:intergenic 25.0%
!! TTATTCCAAGTCTAAAATTC+GGG - Chr7:93067596-93067615 None:intergenic 25.0%
!!! AGCCAATTTTTTACGAAAAA+TGG + Chr7:93068076-93068095 MsG0780041614.01.T01:intron 25.0%
!!! CTATTAGTCTTTGAAGTTAT+CGG - Chr7:93068150-93068169 None:intergenic 25.0%
!!! GTAGGTCTATTTTCTTATTT+GGG + Chr7:93069483-93069502 MsG0780041614.01.T01:three_prime_UTR 25.0%
!!! TAATAGCTTGTTTGGAATAA+CGG + Chr7:93068164-93068183 MsG0780041614.01.T01:intron 25.0%
!!! TAGGTCTATTTTCTTATTTG+GGG + Chr7:93069484-93069503 MsG0780041614.01.T01:three_prime_UTR 25.0%
!!! TATTAGTCTTTGAAGTTATC+GGG - Chr7:93068149-93068168 None:intergenic 25.0%
!!! TCAATGACATTAGTCTTTTT+AGG - Chr7:93068321-93068340 None:intergenic 25.0%
AAAGAGCTAAATGATATGCT+TGG + Chr7:93069283-93069302 MsG0780041614.01.T01:CDS 30.0%
ATAGAATTTCTTGGAAGCAA+GGG - Chr7:93067365-93067384 None:intergenic 30.0%
ATCACAAGCTACAAACTATA+AGG - Chr7:93069356-93069375 None:intergenic 30.0%
ATCTTATCACTGCATGTTAT+TGG + Chr7:93068765-93068784 MsG0780041614.01.T01:CDS 30.0%
ATGTGTGTGCAATAATGAAA+AGG + Chr7:93069431-93069450 MsG0780041614.01.T01:three_prime_UTR 30.0%
CAACACTTCTTAACTCTATT+TGG + Chr7:93066942-93066961 MsG0780041614.01.T01:five_prime_UTR 30.0%
CATGTTTAAGAACCTTAACA+GGG - Chr7:93067179-93067198 None:intergenic 30.0%
CTAAAGCGAACTATAATATG+AGG - Chr7:93067934-93067953 None:intergenic 30.0%
CTCATATTATAGTTCGCTTT+AGG + Chr7:93067932-93067951 MsG0780041614.01.T01:intron 30.0%
GAACATCGTATAGAATTTCT+TGG - Chr7:93067374-93067393 None:intergenic 30.0%
GCTATCATAAAAAAGAAGGA+GGG - Chr7:93066974-93066993 None:intergenic 30.0%
TATAGAATTTCTTGGAAGCA+AGG - Chr7:93067366-93067385 None:intergenic 30.0%
TGCTATCATAAAAAAGAAGG+AGG - Chr7:93066975-93066994 None:intergenic 30.0%
TGGTAATTGTATTGCTTTCT+CGG + Chr7:93068901-93068920 MsG0780041614.01.T01:CDS 30.0%
! GGCAGATTTTATGGTTATTA+AGG + Chr7:93069030-93069049 MsG0780041614.01.T01:CDS 30.0%
! TATTCCAAGTCTAAAATTCG+GGG - Chr7:93067595-93067614 None:intergenic 30.0%
!! AGGTCTATTTTCTTATTTGG+GGG + Chr7:93069485-93069504 MsG0780041614.01.T01:three_prime_UTR 30.0%
!! TCAAAGACTAATAGCTTGTT+TGG + Chr7:93068156-93068175 MsG0780041614.01.T01:intron 30.0%
!!! ACATAGTTTTGTCTATCATG+AGG - Chr7:93067622-93067641 None:intergenic 30.0%
AAACCTCTTCATATCTTCAG+GGG - Chr7:93069260-93069279 None:intergenic 35.0%
AACTCAACTGCATAACCTAA+TGG - Chr7:93068962-93068981 None:intergenic 35.0%
AAGAATGCAAAAGGAGAAGA+AGG + Chr7:93069211-93069230 MsG0780041614.01.T01:CDS 35.0%
AAGGTAGACAAGATGAAACT+AGG - Chr7:93069337-93069356 None:intergenic 35.0%
AATATCCGACAAGCAACAAA+GGG - Chr7:93068880-93068899 None:intergenic 35.0%
ACAAACCTCTTCATATCTTC+AGG - Chr7:93069262-93069281 None:intergenic 35.0%
ACTCAACTGCATAACCTAAT+GGG - Chr7:93068961-93068980 None:intergenic 35.0%
ACTTTGTCATGAAGCAAAGA+TGG + Chr7:93067714-93067733 MsG0780041614.01.T01:intron 35.0%
AGAATGCAAAAGGAGAAGAA+GGG + Chr7:93069212-93069231 MsG0780041614.01.T01:CDS 35.0%
ATGGAATAGGGAGATTCTAA+TGG + Chr7:93068559-93068578 MsG0780041614.01.T01:CDS 35.0%
CAAACCTCTTCATATCTTCA+GGG - Chr7:93069261-93069280 None:intergenic 35.0%
CATTCAACCTGTATGGAATA+GGG + Chr7:93068547-93068566 MsG0780041614.01.T01:CDS 35.0%
CTCAGAAGTAAATTTCGGAT+GGG + Chr7:93069114-93069133 MsG0780041614.01.T01:CDS 35.0%
CTGTGAAGAAGAAAGATTGA+TGG - Chr7:93068682-93068701 None:intergenic 35.0%
CTTTCCATCTTATTCAGTGT+CGG - Chr7:93067975-93067994 None:intergenic 35.0%
GAAATTCTATACGATGTTCC+AGG + Chr7:93067375-93067394 MsG0780041614.01.T01:CDS 35.0%
GCATGTTTAAGAACCTTAAC+AGG - Chr7:93067180-93067199 None:intergenic 35.0%
GTAACCAAAATCATCCTACA+AGG + Chr7:93069305-93069324 MsG0780041614.01.T01:CDS 35.0%
GTATTTGTTCGTATTCACGA+TGG - Chr7:93068613-93068632 None:intergenic 35.0%
GTGCATTGTAAAGTTGTATG+AGG - Chr7:93067784-93067803 None:intergenic 35.0%
GTGTGCAATAATGAAAAGGA+AGG + Chr7:93069435-93069454 MsG0780041614.01.T01:three_prime_UTR 35.0%
TAATATCCGACAAGCAACAA+AGG - Chr7:93068881-93068900 None:intergenic 35.0%
TACAAAGGGAAGAACTTGTA+TGG + Chr7:93069066-93069085 MsG0780041614.01.T01:CDS 35.0%
TCAGAAGTAAATTTCGGATG+GGG + Chr7:93069115-93069134 MsG0780041614.01.T01:CDS 35.0%
TCTCAGAAGTAAATTTCGGA+TGG + Chr7:93069113-93069132 MsG0780041614.01.T01:CDS 35.0%
TCTTCCTTGATGTACGTATT+TGG - Chr7:93068641-93068660 None:intergenic 35.0%
TGACGAAAGACAAATATGAC+AGG - Chr7:93067132-93067151 None:intergenic 35.0%
TTGAGCTTGAACCATACAAT+GGG + Chr7:93068455-93068474 MsG0780041614.01.T01:CDS 35.0%
! AGTTTAACTTCATGAGGAGT+GGG - Chr7:93067066-93067085 None:intergenic 35.0%
! ATTCCAAGTCTAAAATTCGG+GGG - Chr7:93067594-93067613 None:intergenic 35.0%
! GCATTCTTTGGCAGATTTTA+TGG + Chr7:93069021-93069040 MsG0780041614.01.T01:CDS 35.0%
! GTGGAATTGGATCTTTTCTT+GGG + Chr7:93069167-93069186 MsG0780041614.01.T01:CDS 35.0%
! TCTCCTTTTGCATTCTTATG+CGG - Chr7:93069208-93069227 None:intergenic 35.0%
! TGGAATTGGATCTTTTCTTG+GGG + Chr7:93069168-93069187 MsG0780041614.01.T01:CDS 35.0%
! TTGTTGCTTGTCGGATATTA+TGG + Chr7:93068881-93068900 MsG0780041614.01.T01:CDS 35.0%
!! TATTTTCTTATTTGGGGGTG+TGG + Chr7:93069490-93069509 MsG0780041614.01.T01:three_prime_UTR 35.0%
!!! TGGACCCCTCATTTTTTTTT+GGG + Chr7:93068048-93068067 MsG0780041614.01.T01:intron 35.0%
AACCTCTTCATATCTTCAGG+GGG - Chr7:93069259-93069278 None:intergenic 40.0%
AACCTTCCATTCAACCTGTA+TGG + Chr7:93068540-93068559 MsG0780041614.01.T01:CDS 40.0%
AAGCTTTCTAACCAGTCCAA+CGG + Chr7:93068025-93068044 MsG0780041614.01.T01:intron 40.0%
AGAATCTCCCTATTCCATAC+AGG - Chr7:93068557-93068576 None:intergenic 40.0%
AGCAAAAGCTCAAGTTACAG+AGG + Chr7:93068991-93069010 MsG0780041614.01.T01:CDS 40.0%
ATCATTCGTACCTCTTCATC+TGG - Chr7:93068821-93068840 None:intergenic 40.0%
ATTCTTATGCGGGACAAGAA+AGG - Chr7:93069197-93069216 None:intergenic 40.0%
ATTTCTTGGAAGCAAGGGAA+TGG - Chr7:93067360-93067379 None:intergenic 40.0%
CAAGTGTGGTGGTTTCATAA+TGG + Chr7:93068430-93068449 MsG0780041614.01.T01:CDS 40.0%
CAGTGTTGTAAGTGTAGCAT+TGG - Chr7:93067819-93067838 None:intergenic 40.0%
CATTGTATGGTTCAAGCTCA+AGG - Chr7:93068456-93068475 None:intergenic 40.0%
CCATTCAACCTGTATGGAAT+AGG + Chr7:93068546-93068565 MsG0780041614.01.T01:CDS 40.0%
CTTGAGCTTGAACCATACAA+TGG + Chr7:93068454-93068473 MsG0780041614.01.T01:CDS 40.0%
GAAAGAGAAAGACCCTGTTA+AGG + Chr7:93067164-93067183 MsG0780041614.01.T01:CDS 40.0%
GCCTTCTTGATCATCTATGT+CGG - Chr7:93067094-93067113 None:intergenic 40.0%
GGGTCTTTCTCTTTCATTGA+TGG - Chr7:93067159-93067178 None:intergenic 40.0%
GTTTATTACTATCCAGCTGC+AGG + Chr7:93067216-93067235 MsG0780041614.01.T01:CDS 40.0%
TAAGACCTGTATGAGTCGAA+CGG - Chr7:93067424-93067443 None:intergenic 40.0%
TAGACCGACACTGAATAAGA+TGG + Chr7:93067968-93067987 MsG0780041614.01.T01:intron 40.0%
TCCGACATAGATGATCAAGA+AGG + Chr7:93067090-93067109 MsG0780041614.01.T01:CDS 40.0%
TCCTTGATGTACGTATTTGG+CGG - Chr7:93068638-93068657 None:intergenic 40.0%
TGACAGGAAGATTGAAACGA+AGG - Chr7:93067116-93067135 None:intergenic 40.0%
TGTCGGTCTAACAGATTCTA+AGG - Chr7:93067958-93067977 None:intergenic 40.0%
! AGAGGAGTACATGCATTCTT+TGG + Chr7:93069009-93069028 MsG0780041614.01.T01:CDS 40.0%
! CACTCCTTGTAGGATGATTT+TGG - Chr7:93069312-93069331 None:intergenic 40.0%
! CCTATTCCATACAGGTTGAA+TGG - Chr7:93068549-93068568 None:intergenic 40.0%
! CTCCTTTTGCATTCTTATGC+GGG - Chr7:93069207-93069226 None:intergenic 40.0%
! GAACTTGTATGGTGTCAGAT+TGG + Chr7:93069077-93069096 MsG0780041614.01.T01:CDS 40.0%
! GAGAGGAGTTTAACTTCATG+AGG - Chr7:93067072-93067091 None:intergenic 40.0%
! GAGTTTAACTTCATGAGGAG+TGG - Chr7:93067067-93067086 None:intergenic 40.0%
! GGAATTGGATCTTTTCTTGG+GGG + Chr7:93069169-93069188 MsG0780041614.01.T01:CDS 40.0%
! GGTGGAATTGGATCTTTTCT+TGG + Chr7:93069166-93069185 MsG0780041614.01.T01:CDS 40.0%
! TGTTGTAAGTGTAGCATTGG+CGG - Chr7:93067816-93067835 None:intergenic 40.0%
! TTCCATACAGGTTGAATGGA+AGG - Chr7:93068545-93068564 None:intergenic 40.0%
!! TTAGCTCCTGTCTGTTTTAG+CGG - Chr7:93068289-93068308 None:intergenic 40.0%
!!! GTGGACCCCTCATTTTTTTT+TGG + Chr7:93068047-93068066 MsG0780041614.01.T01:intron 40.0%
AAGACCTGTATGAGTCGAAC+GGG - Chr7:93067423-93067442 None:intergenic 45.0%
ATTACTATCCAGCTGCAGGA+AGG + Chr7:93067220-93067239 MsG0780041614.01.T01:CDS 45.0%
CACCACTATTGTTCACAGTG+CGG + Chr7:93067007-93067026 MsG0780041614.01.T01:CDS 45.0%
CATTCACCGCTAAAACAGAC+AGG + Chr7:93068280-93068299 MsG0780041614.01.T01:intron 45.0%
CGTATGCAGTGCATTGAGAA+AGG - Chr7:93068745-93068764 None:intergenic 45.0%
CTTGATCATCTATGTCGGAG+AGG - Chr7:93067089-93067108 None:intergenic 45.0%
GAGACAATTCGTGACTGCAT+GGG + Chr7:93068493-93068512 MsG0780041614.01.T01:CDS 45.0%
GATTGTAATGAGATCAGGGC+TGG + Chr7:93067533-93067552 MsG0780041614.01.T01:intron 45.0%
GGAGCAGTAAAAGGTGGAAT+TGG + Chr7:93069154-93069173 MsG0780041614.01.T01:CDS 45.0%
GTCCCGCATAAGAATGCAAA+AGG + Chr7:93069202-93069221 MsG0780041614.01.T01:CDS 45.0%
GTGCATTGAGAAAGGTGAAG+TGG - Chr7:93068737-93068756 None:intergenic 45.0%
TCCGCCAAATACGTACATCA+AGG + Chr7:93068634-93068653 MsG0780041614.01.T01:CDS 45.0%
TGAGACAATTCGTGACTGCA+TGG + Chr7:93068492-93068511 MsG0780041614.01.T01:CDS 45.0%
TTGAACCATACAATGGGCGA+TGG + Chr7:93068461-93068480 MsG0780041614.01.T01:CDS 45.0%
! CTTATTTGGGGGTGTGGATA+GGG + Chr7:93069496-93069515 MsG0780041614.01.T01:three_prime_UTR 45.0%
! GAGCTTTGTGGAAACCCATT+AGG + Chr7:93068944-93068963 MsG0780041614.01.T01:CDS 45.0%
! GCTAACCCTTTGTTGCTTGT+CGG + Chr7:93068872-93068891 MsG0780041614.01.T01:CDS 45.0%
! GTGTATGGTGGAGCAGTAAA+AGG + Chr7:93069145-93069164 MsG0780041614.01.T01:CDS 45.0%
! TATGGTGGAGCAGTAAAAGG+TGG + Chr7:93069148-93069167 MsG0780041614.01.T01:CDS 45.0%
! TCTTATTTGGGGGTGTGGAT+AGG + Chr7:93069495-93069514 MsG0780041614.01.T01:three_prime_UTR 45.0%
!! AAACTAGGAGCACTCCTTGT+AGG - Chr7:93069322-93069341 None:intergenic 45.0%
!! AAGTTGATGGTGGATTGCAC+TGG + Chr7:93067264-93067283 MsG0780041614.01.T01:CDS 45.0%
!! AGTTGATGGTGGATTGCACT+GGG + Chr7:93067265-93067284 MsG0780041614.01.T01:CDS 45.0%
!! TGGAAGTACCAACTCTGGTT+GGG - Chr7:93067037-93067056 None:intergenic 45.0%
!! TTTGCATTTCTAGCGTCCCA+AGG + Chr7:93068191-93068210 MsG0780041614.01.T01:intron 45.0%
AAAAATGAGGGGTCCACCGT+TGG - Chr7:93068044-93068063 None:intergenic 50.0%
AAGCAAAGATGGTAGACGCG+AGG + Chr7:93067725-93067744 MsG0780041614.01.T01:intron 50.0%
ACCACTGCAAAGGAGCTTTG+TGG + Chr7:93068932-93068951 MsG0780041614.01.T01:CDS 50.0%
ATCCAGCTGCAGGAAGGATT+AGG + Chr7:93067226-93067245 MsG0780041614.01.T01:CDS 50.0%
CACTATTGTTCACAGTGCGG+AGG + Chr7:93067010-93067029 MsG0780041614.01.T01:CDS 50.0%
CAGGTTACACGTCTCAAGTG+TGG + Chr7:93068416-93068435 MsG0780041614.01.T01:intron 50.0%
CGATGGTTGCAAGTAACGTG+TGG - Chr7:93068596-93068615 None:intergenic 50.0%
CTCCGCACTGTGAACAATAG+TGG - Chr7:93067012-93067031 None:intergenic 50.0%
CTTTCTAACCAGTCCAACGG+TGG + Chr7:93068028-93068047 MsG0780041614.01.T01:intron 50.0%
GAGAAAGGTGAAGTGGAACC+AGG - Chr7:93068730-93068749 None:intergenic 50.0%
GCATCGTTAATGCACGTTCG+AGG + Chr7:93068843-93068862 MsG0780041614.01.T01:CDS 50.0%
GTTACACGTCTCAAGTGTGG+TGG + Chr7:93068419-93068438 MsG0780041614.01.T01:CDS 50.0%
TCCACAAAGCTCCTTTGCAG+TGG - Chr7:93068936-93068955 None:intergenic 50.0%
TCCAGCTGCAGGAAGGATTA+GGG + Chr7:93067227-93067246 MsG0780041614.01.T01:CDS 50.0%
TCTTCAGGGGGCAAGCAAAT+TGG - Chr7:93069247-93069266 None:intergenic 50.0%
TCTTGGAAGCAAGGGAATGG+AGG - Chr7:93067357-93067376 None:intergenic 50.0%
TGCCCCCTGAAGATATGAAG+AGG + Chr7:93069254-93069273 MsG0780041614.01.T01:CDS 50.0%
TGGTTGCAAGTAACGTGTGG+CGG - Chr7:93068593-93068612 None:intergenic 50.0%
! AGGCCCCCGAATTTTAGACT+TGG + Chr7:93067588-93067607 MsG0780041614.01.T01:intron 50.0%
! CCACCTGCAATGCTTTTGTG+CGG - Chr7:93068796-93068815 None:intergenic 50.0%
!! CTGGAAGTACCAACTCTGGT+TGG - Chr7:93067038-93067057 None:intergenic 50.0%
!! GTTGATGGTGGATTGCACTG+GGG + Chr7:93067266-93067285 MsG0780041614.01.T01:CDS 50.0%
!! GTTTGGGTTGCCTTACCCTT+AGG - Chr7:93067559-93067578 None:intergenic 50.0%
AAATTCGGGGGCCTAAAGCG+AGG - Chr7:93067582-93067601 None:intergenic 55.0%
AATTCGGGGGCCTAAAGCGA+GGG - Chr7:93067581-93067600 None:intergenic 55.0%
AGCTGCAGGAAGGATTAGGG+AGG + Chr7:93067230-93067249 MsG0780041614.01.T01:CDS 55.0%
CAGCTCCATCGCCCATTGTA+TGG - Chr7:93068469-93068488 None:intergenic 55.0%
CATACAATGGGCGATGGAGC+TGG + Chr7:93068467-93068486 MsG0780041614.01.T01:CDS 55.0%
CCTGTATGAGTCGAACGGGA+CGG - Chr7:93067419-93067438 None:intergenic 55.0%
CGTGACTGCATGGGCAGAAA+TGG + Chr7:93068502-93068521 MsG0780041614.01.T01:CDS 55.0%
GCAACCCAAACCCTCGCTTT+AGG + Chr7:93067568-93067587 MsG0780041614.01.T01:intron 55.0%
GCTGCAGGAAGGATTAGGGA+GGG + Chr7:93067231-93067250 MsG0780041614.01.T01:CDS 55.0%
GGATGGGGTGAAGCTGTGTA+TGG + Chr7:93069130-93069149 MsG0780041614.01.T01:CDS 55.0%
GGTTGCAAGTAACGTGTGGC+GGG - Chr7:93068592-93068611 None:intergenic 55.0%
TCCCTAATCCTTCCTGCAGC+TGG - Chr7:93067231-93067250 None:intergenic 55.0%
TGGGGTGAAGCTGTGTATGG+TGG + Chr7:93069133-93069152 MsG0780041614.01.T01:CDS 55.0%
! GGGGTGTGGATAGGGTTGAT+GGG + Chr7:93069504-93069523 MsG0780041614.01.T01:three_prime_UTR 55.0%
!! ATGAGATCAGGGCTGGCCTA+AGG + Chr7:93067540-93067559 MsG0780041614.01.T01:intron 55.0%
!! ATGGTGGATTGCACTGGGGA+GGG + Chr7:93067270-93067289 MsG0780041614.01.T01:CDS 55.0%
!! CCGCACAAAAGCATTGCAGG+TGG + Chr7:93068793-93068812 MsG0780041614.01.T01:CDS 55.0%
!! CTGCCGCACAAAAGCATTGC+AGG + Chr7:93068790-93068809 MsG0780041614.01.T01:CDS 55.0%
!! GAAGGATTAGGGAGGGTGCT+GGG + Chr7:93067238-93067257 MsG0780041614.01.T01:CDS 55.0%
!! GCAGCTGGAAGTACCAACTC+TGG - Chr7:93067042-93067061 None:intergenic 55.0%
!! GGGTGTGGATAGGGTTGATG+GGG + Chr7:93069505-93069524 MsG0780041614.01.T01:three_prime_UTR 55.0%
!! GGTGTGGATAGGGTTGATGG+GGG + Chr7:93069506-93069525 MsG0780041614.01.T01:three_prime_UTR 55.0%
!! TGAGATCAGGGCTGGCCTAA+GGG + Chr7:93067541-93067560 MsG0780041614.01.T01:intron 55.0%
!! TGCTGGGCGAAAGTTGATGG+TGG + Chr7:93067254-93067273 MsG0780041614.01.T01:CDS 55.0%
CCGTCCCGTTCGACTCATAC+AGG + Chr7:93067416-93067435 MsG0780041614.01.T01:CDS 60.0%
GCAGGTGGAGCCAGATGAAG+AGG + Chr7:93068808-93068827 MsG0780041614.01.T01:CDS 60.0%
GCATGGGCAGAAATGGCTCG+AGG + Chr7:93068509-93068528 MsG0780041614.01.T01:CDS 60.0%
GGCAGCAGTCACCACTGCAA+AGG + Chr7:93068922-93068941 MsG0780041614.01.T01:CDS 60.0%
GGGGCCTAAAGCGAGGGTTT+GGG - Chr7:93067575-93067594 None:intergenic 60.0%
TCATGAGGAGTGGGTGCAGC+TGG - Chr7:93067057-93067076 None:intergenic 60.0%
TGGAACCAGGCGACGAATCG+CGG - Chr7:93068717-93068736 None:intergenic 60.0%
! GGAAGGATTAGGGAGGGTGC+TGG + Chr7:93067237-93067256 MsG0780041614.01.T01:CDS 60.0%
! GGGGGTGTGGATAGGGTTGA+TGG + Chr7:93069503-93069522 MsG0780041614.01.T01:three_prime_UTR 60.0%
!! GATGGTGGATTGCACTGGGG+AGG + Chr7:93067269-93067288 MsG0780041614.01.T01:CDS 60.0%
!! GGGTGCTGGGCGAAAGTTGA+TGG + Chr7:93067251-93067270 MsG0780041614.01.T01:CDS 60.0%
!! TCAGGGCTGGCCTAAGGGTA+AGG + Chr7:93067546-93067565 MsG0780041614.01.T01:intron 60.0%
CATAGCCGCGATTCGTCGCC+TGG + Chr7:93068709-93068728 MsG0780041614.01.T01:CDS 65.0%
GCGGAGGTCCCAACCAGAGT+TGG + Chr7:93067026-93067045 MsG0780041614.01.T01:CDS 65.0%
GGGGGCCTAAAGCGAGGGTT+TGG - Chr7:93067576-93067595 None:intergenic 65.0%
TGAGGGGTCCACCGTTGGAC+TGG - Chr7:93068039-93068058 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 93066939 93069574 93066939 ID=MsG0780041614.01;Name=MsG0780041614.01
Chr7 mRNA 93066939 93069574 93066939 ID=MsG0780041614.01.T01;Parent=MsG0780041614.01;Name=MsG0780041614.01.T01;_AED=0.34;_eAED=0.34;_QI=55|1|1|1|1|1|2|214|461
Chr7 exon 93066939 93067437 93066939 ID=MsG0780041614.01.T01:exon:20277;Parent=MsG0780041614.01.T01
Chr7 exon 93068419 93069574 93068419 ID=MsG0780041614.01.T01:exon:20278;Parent=MsG0780041614.01.T01
Chr7 five_prime_UTR 93066939 93066993 93066939 ID=MsG0780041614.01.T01:five_prime_utr;Parent=MsG0780041614.01.T01
Chr7 CDS 93066994 93067437 93066994 ID=MsG0780041614.01.T01:cds;Parent=MsG0780041614.01.T01
Chr7 CDS 93068419 93069360 93068419 ID=MsG0780041614.01.T01:cds;Parent=MsG0780041614.01.T01
Chr7 three_prime_UTR 93069361 93069574 93069361 ID=MsG0780041614.01.T01:three_prime_utr;Parent=MsG0780041614.01.T01
Gene Sequence

>MsG0780041614.01.T01

ATGACTTCTTCATCACCACTATTGTTCACAGTGCGGAGGTCCCAACCAGAGTTGGTACTTCCAGCTGCACCCACTCCTCATGAAGTTAAACTCCTCTCCGACATAGATGATCAAGAAGGCCTTCGTTTCAATCTTCCTGTCATATTTGTCTTTCGTCATGAACCATCAATGAAAGAGAAAGACCCTGTTAAGGTTCTTAAACATGCACTCTCACAAACACTTGTTTATTACTATCCAGCTGCAGGAAGGATTAGGGAGGGTGCTGGGCGAAAGTTGATGGTGGATTGCACTGGGGAGGGTGTCATGTTCATTGAAGCTGAAGCTGATATAACACTTGATCAATTTGGTGATGCTCTGCAACCTCCATTCCCTTGCTTCCAAGAAATTCTATACGATGTTCCAGGATCAGAATATATTATTGACCGTCCCGTTCGACTCATACAGGTTACACGTCTCAAGTGTGGTGGTTTCATAATGGCCTTGAGCTTGAACCATACAATGGGCGATGGAGCTGGTTTGAGACAATTCGTGACTGCATGGGCAGAAATGGCTCGAGGAGCAAATCAACCTTCCATTCAACCTGTATGGAATAGGGAGATTCTAATGGCAAGAGACCCGCCACACGTTACTTGCAACCATCGTGAATACGAACAAATACTTCCGCCAAATACGTACATCAAGGAAGAAGATACTACTATTGTAGTCCATCAATCTTTCTTCTTCACAGCTGCTCACATAGCCGCGATTCGTCGCCTGGTTCCACTTCACCTTTCTCAATGCACTGCATACGATCTTATCACTGCATGTTATTGGTGCTGCCGCACAAAAGCATTGCAGGTGGAGCCAGATGAAGAGGTACGAATGATGTGCATCGTTAATGCACGTTCGAGGTTTAGTGCTAACCCTTTGTTGCTTGTCGGATATTATGGTAATTGTATTGCTTTCTCGGCAGCAGTCACCACTGCAAAGGAGCTTTGTGGAAACCCATTAGGTTATGCAGTTGAGTTGATAAGAAAAGCAAAAGCTCAAGTTACAGAGGAGTACATGCATTCTTTGGCAGATTTTATGGTTATTAAGGAAAGATGTTTATTTACAAAGGGAAGAACTTGTATGGTGTCAGATTGGACTCGTGCTAAGTTCTCAGAAGTAAATTTCGGATGGGGTGAAGCTGTGTATGGTGGAGCAGTAAAAGGTGGAATTGGATCTTTTCTTGGGGGAACCTTTCTTGTCCCGCATAAGAATGCAAAAGGAGAAGAAGGGTTAATATTACCAATTTGCTTGCCCCCTGAAGATATGAAGAGGTTTGTTAAAGAGCTAAATGATATGCTTGGTAACCAAAATCATCCTACAAGGAGTGCTCCTAGTTTCATCTTGTCTACCTTATAG
Protein sequence

>MsG0780041614.01.T01

MTSSSPLLFTVRRSQPELVLPAAPTPHEVKLLSDIDDQEGLRFNLPVIFVFRHEPSMKEKDPVKVLKHALSQTLVYYYPAAGRIREGAGRKLMVDCTGEGVMFIEAEADITLDQFGDALQPPFPCFQEILYDVPGSEYIIDRPVRLIQVTRLKCGGFIMALSLNHTMGDGAGLRQFVTAWAEMARGANQPSIQPVWNREILMARDPPHVTCNHREYEQILPPNTYIKEEDTTIVVHQSFFFTAAHIAAIRRLVPLHLSQCTAYDLITACYWCCRTKALQVEPDEEVRMMCIVNARSRFSANPLLLVGYYGNCIAFSAAVTTAKELCGNPLGYAVELIRKAKAQVTEEYMHSLADFMVIKERCLFTKGRTCMVSDWTRAKFSEVNFGWGEAVYGGAVKGGIGSFLGGTFLVPHKNAKGEEGLILPICLPPEDMKRFVKELNDMLGNQNHPTRSAPSFILSTL*