AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042010.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042010.01.T01 MTR_8g009290 94.194 465 27 0 1 465 1 465 0.0 907
MsG0880042010.01.T01 MTR_2g035830 37.113 485 266 14 1 464 1 467 2.42e-80 257
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042010.01.T01 AT2G44640 52.532 474 193 8 1 465 1 451 1.50e-154 446
MsG0880042010.01.T01 AT3G06960 35.425 494 273 13 1 464 1 478 2.81e-78 252
MsG0880042010.01.T01 AT3G06960 38.158 304 176 6 1 294 1 302 6.14e-55 187

Find 128 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTGTGCTTCCTGGATT+TGG 0.253326 8:-2425186 MsG0880042010.01.T01:CDS
CAGGTAGCTCCTGTGCTTCC+TGG 0.270782 8:-2425192 MsG0880042010.01.T01:CDS
TTGCTTGGTATTCACCAAAA+AGG 0.275530 8:-2424076 MsG0880042010.01.T01:CDS
CGAGTCTATATCAGTTGATT+TGG 0.278646 8:-2426653 MsG0880042010.01.T01:CDS
CAGCCATTGATTCATCATTC+TGG 0.279261 8:-2429182 MsG0880042010.01.T01:CDS
CAAAGAATCAATCGAAATTC+TGG 0.282288 8:+2424193 None:intergenic
CCTTCAACATCTGTGTTGTT+TGG 0.283212 8:-2427103 MsG0880042010.01.T01:CDS
GGAAGATTCACAAAGAAGTT+TGG 0.289114 8:-2425052 MsG0880042010.01.T01:CDS
GAAGATTCACAAAGAAGTTT+GGG 0.296464 8:-2425051 MsG0880042010.01.T01:CDS
GTACCTCATGCAGCAGTATC+TGG 0.307606 8:-2426406 MsG0880042010.01.T01:CDS
GACTCCACATCGCTAGCTTT+AGG 0.309022 8:+2424110 None:intergenic
ATCTGTGTTGTTTGGTTTAG+AGG 0.310418 8:-2427095 MsG0880042010.01.T01:CDS
TCCACATTACCACGGACTTA+TGG 0.315616 8:-2426428 MsG0880042010.01.T01:CDS
ACTCCACATCGCTAGCTTTA+GGG 0.317436 8:+2424111 None:intergenic
GGCATCCCTTGCAGCTCGTC+GGG 0.334310 8:-2426632 MsG0880042010.01.T01:CDS
GCAGCAGTATCTGGAATTAT+TGG 0.335779 8:-2426397 MsG0880042010.01.T01:intron
TTTCTTCTCTTTGACACAGC+TGG 0.345108 8:+2425130 None:intergenic
AAAGGAACCATACTCCTTCT+TGG 0.350882 8:+2428990 None:intergenic
TTGACCACAAAGGAAGATAC+TGG 0.352098 8:-2426684 MsG0880042010.01.T01:CDS
CGGGGATTGCGATACCGCTT+TGG 0.356101 8:-2426613 MsG0880042010.01.T01:CDS
ATTGAAAATTTAATTGCAAC+AGG 0.372612 8:-2423782 MsG0880042010.01.T01:three_prime_UTR
TAACTTAATCTTTCAGCAAC+AGG 0.381264 8:-2424903 MsG0880042010.01.T01:intron
CGGAAAGAACCTTATTGATT+CGG 0.383096 8:-2425161 MsG0880042010.01.T01:CDS
TATAGGTGGCTTGCAGCAAC+TGG 0.383507 8:-2427277 MsG0880042010.01.T01:intron
GATCCTCTCCCGAATCAATA+AGG 0.384097 8:+2425152 None:intergenic
GGGGATTGCGATACCGCTTT+GGG 0.386728 8:-2426612 MsG0880042010.01.T01:CDS
GGTTGGGCCAAGTTTGTTCC+TGG 0.387086 8:-2429126 MsG0880042010.01.T01:CDS
CCTTCTCCCAAGAAGGAGTA+TGG 0.388810 8:-2428997 MsG0880042010.01.T01:CDS
ACTGAAGCGTCAAGAGGAAT+AGG 0.389532 8:+2429099 None:intergenic
TTTCGATTGATTCTTTGAAC+AGG 0.390812 8:-2424187 MsG0880042010.01.T01:CDS
GGAAAGAACCTTATTGATTC+GGG 0.392979 8:-2425160 MsG0880042010.01.T01:CDS
AATGTCTAATTGTAGGTTGC+AGG 0.396953 8:-2424239 MsG0880042010.01.T01:intron
CTAGATATATCTTCAGCTTC+CGG 0.399624 8:-2425004 MsG0880042010.01.T01:CDS
ACTTAAGAGTTATGTTTAGT+TGG 0.406432 8:-2423884 MsG0880042010.01.T01:three_prime_UTR
AAAGCTAGCGATGTGGAGTC+TGG 0.420043 8:-2424107 MsG0880042010.01.T01:CDS
AGCCATTGATTCATCATTCT+GGG 0.424530 8:-2429181 MsG0880042010.01.T01:CDS
TCCACAAAACCTCGATGGTT+GGG 0.430228 8:-2429142 MsG0880042010.01.T01:CDS
CAACTGGACAATTCCGTCCT+AGG 0.440660 8:-2427261 MsG0880042010.01.T01:CDS
GGAAAATGATGAGTGATATG+AGG 0.441130 8:+2429045 None:intergenic
TCACTTCTCCTTGATTTCAC+TGG 0.444371 8:-2428958 MsG0880042010.01.T01:CDS
GAATCTGCTCGAAATACAAC+TGG 0.446191 8:+2424215 None:intergenic
ATTCAATCTCTCGACAGTTA+AGG 0.452262 8:-2427194 MsG0880042010.01.T01:CDS
AGAAGTTTGGGGACTTAACC+CGG 0.462716 8:-2425039 MsG0880042010.01.T01:CDS
CATCCCAGTATCTTCCTTTG+TGG 0.468934 8:+2426680 None:intergenic
GCTGCAAATGAAATCTTCAA+TGG 0.468982 8:+2424151 None:intergenic
GAGAAGTGACTGAAATGAAA+AGG 0.473027 8:+2428972 None:intergenic
AAGGAACCATACTCCTTCTT+GGG 0.477484 8:+2428991 None:intergenic
CTCCACAAAACCTCGATGGT+TGG 0.478725 8:-2429143 MsG0880042010.01.T01:CDS
GTCCCAGAATGATGAATCAA+TGG 0.487363 8:+2429179 None:intergenic
CTTGCGAAGAAAATTCTGAA+TGG 0.488339 8:-2424980 MsG0880042010.01.T01:CDS
CTCAGCTCCTTCTCCCAAGA+AGG 0.491627 8:-2429004 MsG0880042010.01.T01:CDS
CCAAACAACACAGATGTTGA+AGG 0.492018 8:+2427103 None:intergenic
GTTCTTTCCGTTCCAAATCC+AGG 0.492275 8:+2425174 None:intergenic
TGGCATCCCTTGCAGCTCGT+CGG 0.492674 8:-2426633 MsG0880042010.01.T01:CDS
CTGAAAGATTAAGTTAAGCC+GGG 0.493014 8:+2424910 None:intergenic
ACACCGCTGTCTCTACTGCC+AGG 0.495012 8:-2426538 MsG0880042010.01.T01:CDS
ATCATAAGTAACAGCCGCCT+TGG 0.496861 8:+2426507 None:intergenic
ATGATAAGATCAAGTACCTC+TGG 0.501416 8:-2426489 MsG0880042010.01.T01:CDS
AACGATGACCAGTGAAATCA+AGG 0.503727 8:+2428950 None:intergenic
GAAAATGATGAGTGATATGA+GGG 0.506868 8:+2429046 None:intergenic
GCTGAAAGATTAAGTTAAGC+CGG 0.510159 8:+2424909 None:intergenic
CACAACATCATCATCATCAA+TGG 0.511600 8:-2429217 MsG0880042010.01.T01:exon
CTGAAGCGTCAAGAGGAATA+GGG 0.513543 8:+2429100 None:intergenic
GATTCTTTGAACAGGAAACA+TGG 0.515337 8:-2424179 MsG0880042010.01.T01:CDS
TCTGTGTTGTTTGGTTTAGA+GGG 0.522771 8:-2427094 MsG0880042010.01.T01:CDS
CAATCCCCGACGAGCTGCAA+GGG 0.523970 8:+2426627 None:intergenic
TGATATGAGGGAGTTGTTGA+TGG 0.527979 8:+2429058 None:intergenic
TAAGAACAACGGTAGTCCTC+AGG 0.529738 8:-2426584 MsG0880042010.01.T01:CDS
TTGGGAGAAGGAGCTGAGGA+AGG 0.531214 8:+2429009 None:intergenic
ATTCTAAAATGAACGATGCA+TGG 0.531505 8:+2423940 None:intergenic
TATCTAGACGAGCATCTACC+CGG 0.531804 8:+2425020 None:intergenic
GCCGCCTTGGCACATAACCC+TGG 0.538068 8:+2426520 None:intergenic
CCATACTCCTTCTTGGGAGA+AGG 0.543963 8:+2428997 None:intergenic
AGGGTCACCAGGAACAAACT+TGG 0.547546 8:+2429119 None:intergenic
TTGATTTCACTGGTCATCGT+TGG 0.548954 8:-2428948 MsG0880042010.01.T01:intron
ACCATAAGTCCGTGGTAATG+TGG 0.556100 8:+2426427 None:intergenic
CAAATCAACTGATATAGACT+CGG 0.556932 8:+2426654 None:intergenic
GAACCTTATTGATTCGGGAG+AGG 0.559230 8:-2425155 MsG0880042010.01.T01:CDS
GATTAAGTTAAGCCGGGGTG+AGG 0.564997 8:+2424916 None:intergenic
TCCTCTCCACAAAACCTCGA+TGG 0.565773 8:-2429147 MsG0880042010.01.T01:CDS
ATTCTTTGAACAGGAAACAT+GGG 0.573586 8:-2424178 MsG0880042010.01.T01:CDS
GTTCCAAATCCAGGAAGCAC+AGG 0.585341 8:+2425183 None:intergenic
TGATGATGATGATGTTGTGC+GGG 0.585517 8:+2429221 None:intergenic
TGTGCTTCCTGGATTTGGAA+CGG 0.585569 8:-2425181 MsG0880042010.01.T01:CDS
TTGTTTGGTTTAGAGGGCCA+TGG 0.586865 8:-2427088 MsG0880042010.01.T01:CDS
CATCATCATCATCAATGGCT+AGG 0.589680 8:-2429212 MsG0880042010.01.T01:exon
TCAAGAGGAATAGGGTCACC+AGG 0.593510 8:+2429108 None:intergenic
ATCTTACAGTGGAGGCAGCA+TGG 0.600522 8:-2426720 MsG0880042010.01.T01:CDS
GCAATCCCCGACGAGCTGCA+AGG 0.603550 8:+2426626 None:intergenic
GTTTGCTATACTTTGCAGCA+AGG 0.605503 8:-2425073 MsG0880042010.01.T01:CDS
ACTGCCAGGGTTATGTGCCA+AGG 0.607980 8:-2426524 MsG0880042010.01.T01:CDS
TGGGAGAAGGAGCTGAGGAA+GGG 0.611872 8:+2429010 None:intergenic
GCATCCCTTGCAGCTCGTCG+GGG 0.611975 8:-2426631 MsG0880042010.01.T01:CDS
CACCGCTGTCTCTACTGCCA+GGG 0.614848 8:-2426537 MsG0880042010.01.T01:CDS
CTGGAGAAACACGGAGACTG+AGG 0.616034 8:-2426470 MsG0880042010.01.T01:CDS
CAGTCTCCGTGTTTCTCCAG+AGG 0.618270 8:+2426473 None:intergenic
CTGGAAACTGAAGCGTCAAG+AGG 0.619867 8:+2429093 None:intergenic
TTAAGCCGGGGTGAGGCTGA+CGG 0.619931 8:+2424923 None:intergenic
GAAGTTTGGGGACTTAACCC+GGG 0.623442 8:-2425038 MsG0880042010.01.T01:CDS
GAGGAAGGGATAATGCCAAA+GGG 0.625924 8:+2429024 None:intergenic
TGATCACGATCTTACAGTGG+AGG 0.626341 8:-2426728 MsG0880042010.01.T01:CDS
TGAGGAAGGGATAATGCCAA+AGG 0.630223 8:+2429023 None:intergenic
TTGATGGCGATAGAGTCTGC+TGG 0.631814 8:+2429074 None:intergenic
GCCAGGGTTATGTGCCAAGG+CGG 0.636658 8:-2426521 MsG0880042010.01.T01:CDS
CTTCTTGGGAGAAGGAGCTG+AGG 0.640737 8:+2429005 None:intergenic
GGCTTGTTTCCACATTACCA+CGG 0.643480 8:-2426436 MsG0880042010.01.T01:CDS
AACAACCGTCAGCCTCACCC+CGG 0.648424 8:-2424928 MsG0880042010.01.T01:CDS
AAGATTCACAAAGAAGTTTG+GGG 0.651005 8:-2425050 MsG0880042010.01.T01:CDS
ATTCCAGATACTGCTGCATG+AGG 0.653346 8:+2426403 None:intergenic
TTCTGATCACGATCTTACAG+TGG 0.653407 8:-2426731 MsG0880042010.01.T01:CDS
ATCTAGACGAGCATCTACCC+GGG 0.654861 8:+2425021 None:intergenic
TGAAAGATTAAGTTAAGCCG+GGG 0.659744 8:+2424911 None:intergenic
GAGAAACACGGAGACTGAGG+AGG 0.661282 8:-2426467 MsG0880042010.01.T01:CDS
CAAGTACCTCTGGAGAAACA+CGG 0.661736 8:-2426479 MsG0880042010.01.T01:CDS
AAATCAACTGATATAGACTC+GGG 0.662894 8:+2426655 None:intergenic
CAGTTGTTTGTTGACCACAA+AGG 0.665261 8:-2426694 MsG0880042010.01.T01:CDS
TGACCACAAAGGAAGATACT+GGG 0.665611 8:-2426683 MsG0880042010.01.T01:CDS
TCAGTTGCATTAGTAGCCTG+AGG 0.666364 8:+2426568 None:intergenic
TGTTCTTATGCATCCCAAAG+CGG 0.671112 8:+2426599 None:intergenic
TGACCCTAAAGCTAGCGATG+TGG 0.680404 8:-2424114 MsG0880042010.01.T01:CDS
TTGATGATGATGATGTTGTG+CGG 0.685767 8:+2429220 None:intergenic
AACCCTGGCAGTAGAGACAG+CGG 0.710115 8:+2426535 None:intergenic
CATGAGGTACCATAAGTCCG+TGG 0.716130 8:+2426419 None:intergenic
TTTGGGATGCATAAGAACAA+CGG 0.717493 8:-2426595 MsG0880042010.01.T01:CDS
GAGACTGAGGAGGAATACGA+AGG 0.720894 8:-2426457 MsG0880042010.01.T01:CDS
TTGTGGTCAACAAACAACTG+AGG 0.728374 8:+2426697 None:intergenic
CAAACTTGGCCCAACCATCG+AGG 0.733200 8:+2429133 None:intergenic
AGGAGATAAAGCAAACTGTG+AGG 0.736725 8:+2427123 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAATTGGATTATTTTTTT+GGG - Chr8:2424678-2424697 MsG0880042010.01.T01:intron 10.0%
!!! TAAAAATTGGATTATTTTTT+TGG - Chr8:2424677-2424696 MsG0880042010.01.T01:intron 10.0%
!!! TAATTATTTTTGTTTTGTTA+TGG - Chr8:2427776-2427795 MsG0880042010.01.T01:intron 10.0%
!! AATCAAATAGTAAATGAAAT+AGG - Chr8:2426965-2426984 MsG0880042010.01.T01:intron 15.0%
!! GAAATGAAAATACAATATTA+AGG - Chr8:2428731-2428750 MsG0880042010.01.T01:intron 15.0%
!! TCATTTCTTGAATAAAAAAT+AGG - Chr8:2425036-2425055 MsG0880042010.01.T01:CDS 15.0%
!! TGTATAATTTGAATTTGAAT+GGG - Chr8:2424896-2424915 MsG0880042010.01.T01:intron 15.0%
!! TTAATTCAATATACTGAAAT+TGG - Chr8:2428656-2428675 MsG0880042010.01.T01:intron 15.0%
!! TTATCTTCTTTAATAGTATA+AGG - Chr8:2425219-2425238 MsG0880042010.01.T01:intron 15.0%
!! TTTCATTTACTATTTGATTA+AGG + Chr8:2426964-2426983 None:intergenic 15.0%
!!! AAAAATAACAAAAGTGTAAT+TGG + Chr8:2429167-2429186 None:intergenic 15.0%
!!! AAAGAAGCATATAAAAAAAA+CGG + Chr8:2424181-2424200 None:intergenic 15.0%
!!! ACATTTTTTTTATAAAAGAG+AGG - Chr8:2427274-2427293 MsG0880042010.01.T01:CDS 15.0%
!!! ATATTTTTCAATTTCAGAAA+AGG + Chr8:2426115-2426134 None:intergenic 15.0%
!!! ATTTATTGTGTTGATTTTTT+TGG - Chr8:2427072-2427091 MsG0880042010.01.T01:CDS 15.0%
!!! CATTTTTTTTATAAAAGAGA+GGG - Chr8:2427275-2427294 MsG0880042010.01.T01:CDS 15.0%
!!! TCAAACATTTTAATCATAAT+GGG - Chr8:2424141-2424160 MsG0880042010.01.T01:CDS 15.0%
!!! TTATATGCTTCTTTAAAAAT+TGG - Chr8:2424187-2424206 MsG0880042010.01.T01:CDS 15.0%
!!! TTCAAACATTTTAATCATAA+TGG - Chr8:2424140-2424159 MsG0880042010.01.T01:CDS 15.0%
!!! TTTTATAGATTACATAAACA+TGG + Chr8:2425653-2425672 None:intergenic 15.0%
!! AAGAGAGAATAAAACATAAA+AGG + Chr8:2426785-2426804 None:intergenic 20.0%
!! AATAAACTCTTATTGGATTA+AGG + Chr8:2427231-2427250 None:intergenic 20.0%
!! AATGAAACTTTAGACAATTT+AGG - Chr8:2424271-2424290 MsG0880042010.01.T01:intron 20.0%
!! AGAAAAAAATGTTAACAAAC+AGG - Chr8:2424552-2424571 MsG0880042010.01.T01:intron 20.0%
!! AGAGAGAATAAAACATAAAA+GGG + Chr8:2426784-2426803 None:intergenic 20.0%
!! ATATTTATAAGTTAGTCCAA+CGG + Chr8:2424433-2424452 None:intergenic 20.0%
!! ATGTAATCTATAAAACATCA+TGG - Chr8:2425658-2425677 MsG0880042010.01.T01:intron 20.0%
!! ATTGAAAATTTAATTGCAAC+AGG - Chr8:2429222-2429241 MsG0880042010.01.T01:five_prime_UTR 20.0%
!! CAACTCATAATACTATAAAT+TGG - Chr8:2426139-2426158 MsG0880042010.01.T01:intron 20.0%
!! GTGTATAATTTGAATTTGAA+TGG - Chr8:2424895-2424914 MsG0880042010.01.T01:intron 20.0%
!! TAATCCAATAAGAGTTTATT+GGG - Chr8:2427231-2427250 MsG0880042010.01.T01:CDS 20.0%
!! TTAATCCAATAAGAGTTTAT+TGG - Chr8:2427230-2427249 MsG0880042010.01.T01:CDS 20.0%
!! TTATAAGCTATAAGCTTAAA+GGG - Chr8:2424596-2424615 MsG0880042010.01.T01:intron 20.0%
!! TTATGGTTCATAATAAATTC+AGG - Chr8:2427793-2427812 MsG0880042010.01.T01:intron 20.0%
!! TTTATTCAAGAAATGAGAAT+TGG + Chr8:2425032-2425051 None:intergenic 20.0%
!! TTTCAATTTCTTACTTTGAT+GGG - Chr8:2424740-2424759 MsG0880042010.01.T01:intron 20.0%
!!! AAAAATCAACTAACTCATTT+TGG + Chr8:2429091-2429110 None:intergenic 20.0%
!!! AAGTTTTTTAAGAGTTTGTT+AGG - Chr8:2427323-2427342 MsG0880042010.01.T01:intron 20.0%
!!! GTAACTGTAAAGAATTTTTA+CGG - Chr8:2428439-2428458 MsG0880042010.01.T01:intron 20.0%
!!! GTTTCTTATTTCACTATATT+AGG - Chr8:2425574-2425593 MsG0880042010.01.T01:intron 20.0%
!!! TAGATTTTGCTTAATTTTCA+GGG + Chr8:2427573-2427592 None:intergenic 20.0%
!!! TATGTTTTGATCATTAGTTT+CGG - Chr8:2425186-2425205 MsG0880042010.01.T01:CDS 20.0%
!!! TCTTTTTCATTTTTATGGTT+CGG - Chr8:2426706-2426725 MsG0880042010.01.T01:CDS 20.0%
!!! TCTTTTTTTGCTAGAATTAT+AGG - Chr8:2426801-2426820 MsG0880042010.01.T01:intron 20.0%
!!! TGTTATGCTTCTTTAAAAAT+TGG - Chr8:2424664-2424683 MsG0880042010.01.T01:intron 20.0%
!!! TTAAGTTGTTTATCCAAAAA+TGG + Chr8:2428173-2428192 None:intergenic 20.0%
!!! TTATTTTTCATTATCTGATG+TGG - Chr8:2426005-2426024 MsG0880042010.01.T01:intron 20.0%
! AAAAAATGTTCCTAAAACTC+AGG + Chr8:2427263-2427282 None:intergenic 25.0%
! AAAAATGTTCCTAAAACTCA+GGG + Chr8:2427262-2427281 None:intergenic 25.0%
! AAATATGAAAATCACTCTGA+TGG - Chr8:2426998-2427017 MsG0880042010.01.T01:intron 25.0%
! AAATCAACACAATAAATCTC+AGG + Chr8:2427069-2427088 None:intergenic 25.0%
! AAGAGTTTGTATGAAAATCA+AGG + Chr8:2427697-2427716 None:intergenic 25.0%
! AATATGAAAATCACTCTGAT+GGG - Chr8:2426999-2427018 MsG0880042010.01.T01:intron 25.0%
! AATCTAGACATGCTAATAAT+AGG - Chr8:2427587-2427606 MsG0880042010.01.T01:intron 25.0%
! AATTAATCAACATTTCACTG+CGG + Chr8:2428642-2428661 None:intergenic 25.0%
! ACATTGTCTCATATTATTAC+TGG - Chr8:2425414-2425433 MsG0880042010.01.T01:intron 25.0%
! ACCATAAAAATGAAAAAGAG+TGG + Chr8:2426705-2426724 None:intergenic 25.0%
! ACTTAAGAGTTATGTTTAGT+TGG - Chr8:2429120-2429139 MsG0880042010.01.T01:CDS 25.0%
! ACTTATGGAATCAATATGAA+TGG - Chr8:2427634-2427653 MsG0880042010.01.T01:intron 25.0%
! AGAGTTTGTATGAAAATCAA+GGG + Chr8:2427696-2427715 None:intergenic 25.0%
! AGATATCGTTCTTCATATAT+TGG - Chr8:2425259-2425278 MsG0880042010.01.T01:intron 25.0%
! ATAGGATTAGGTAAAGAAAA+AGG - Chr8:2426819-2426838 MsG0880042010.01.T01:intron 25.0%
! ATAGTTAATAAGCTAGGTTA+TGG - Chr8:2424317-2424336 MsG0880042010.01.T01:intron 25.0%
! ATGCATGAAAGTTACAAAAA+TGG + Chr8:2429009-2429028 None:intergenic 25.0%
! CTATACTAGTCAAATGAAAA+AGG - Chr8:2428600-2428619 MsG0880042010.01.T01:intron 25.0%
! CTGATTGAATTTGTAATGTT+TGG - Chr8:2424398-2424417 MsG0880042010.01.T01:intron 25.0%
! CTTATAAGCTATAAGCTTAA+AGG - Chr8:2424595-2424614 MsG0880042010.01.T01:intron 25.0%
! GAATAAAAAATAGGAGTTGT+TGG - Chr8:2425045-2425064 MsG0880042010.01.T01:CDS 25.0%
! GATAGAACTAGTAAATTCAA+AGG + Chr8:2427485-2427504 None:intergenic 25.0%
! GTTTCAATTTCTTACTTTGA+TGG - Chr8:2424739-2424758 MsG0880042010.01.T01:intron 25.0%
! TAAGCTCATATGACAAAAAA+AGG + Chr8:2424579-2424598 None:intergenic 25.0%
! TCATTATGTTACAAACTACT+TGG - Chr8:2427545-2427564 MsG0880042010.01.T01:intron 25.0%
! TTATGGATAGTTAATAAGCT+AGG - Chr8:2424311-2424330 MsG0880042010.01.T01:intron 25.0%
! TTCAATTTCTTACTTTGATG+GGG - Chr8:2424741-2424760 MsG0880042010.01.T01:intron 25.0%
! TTGATTAAGGATTAAAAGTC+CGG + Chr8:2426951-2426970 None:intergenic 25.0%
! TTTGCTAGAATTATAGGATT+AGG - Chr8:2426807-2426826 MsG0880042010.01.T01:intron 25.0%
!! AATCAATATGAATGGATTCA+AGG - Chr8:2427642-2427661 MsG0880042010.01.T01:intron 25.0%
!! AATCTTGTTTATGATCTTCA+TGG - Chr8:2428550-2428569 MsG0880042010.01.T01:intron 25.0%
!! AGATTTAATGCCGAAATTTT+TGG - Chr8:2427904-2427923 MsG0880042010.01.T01:intron 25.0%
!! ATATCAACTATCATTTTCCT+AGG + Chr8:2425763-2425782 None:intergenic 25.0%
!! CTAGATTTTGCTTAATTTTC+AGG + Chr8:2427574-2427593 None:intergenic 25.0%
!! TATCCTTTTTATCATAGTAC+CGG - Chr8:2426929-2426948 MsG0880042010.01.T01:intron 25.0%
!! TATGTTGATAGAAAAGAAGA+GGG - Chr8:2424949-2424968 MsG0880042010.01.T01:CDS 25.0%
!! TTATGTTGATAGAAAAGAAG+AGG - Chr8:2424948-2424967 MsG0880042010.01.T01:CDS 25.0%
!! TTTAATTTACTTGAGCATGA+TGG - Chr8:2424246-2424265 MsG0880042010.01.T01:intron 25.0%
!! TTTTCGAAATGTCTAATTGT+AGG - Chr8:2428758-2428777 MsG0880042010.01.T01:intron 25.0%
!!! AATTGGATTATTTTTTTGGG+TGG - Chr8:2424681-2424700 MsG0880042010.01.T01:intron 25.0%
!!! ACAAGTCACTTTTTTCATAT+GGG - Chr8:2425854-2425873 MsG0880042010.01.T01:intron 25.0%
!!! ACCACTCTTTTTCATTTTTA+TGG - Chr8:2426701-2426720 MsG0880042010.01.T01:CDS 25.0%
!!! ACTTTTTTCAAGTAAGATGA+CGG - Chr8:2424490-2424509 MsG0880042010.01.T01:intron 25.0%
!!! ATGATGTTTGATTTTGTTGT+TGG - Chr8:2424848-2424867 MsG0880042010.01.T01:intron 25.0%
!!! ATTGGATTATTTTTTTGGGT+GGG - Chr8:2424682-2424701 MsG0880042010.01.T01:intron 25.0%
!!! TCAACATTTTGAGAGTATAA+AGG + Chr8:2426052-2426071 None:intergenic 25.0%
!!! TGTTTAGCTTTTCATTCATT+TGG + Chr8:2424923-2424942 None:intergenic 25.0%
!!! TTTACTAGTTCTATCAAACT+CGG - Chr8:2427490-2427509 MsG0880042010.01.T01:intron 25.0%
AAAATGTTCCTAAAACTCAG+GGG + Chr8:2427261-2427280 None:intergenic 30.0%
AAAGATAGTTGCTCTTATCA+AGG + Chr8:2428137-2428156 None:intergenic 30.0%
AAATCAACTGATATAGACTC+GGG + Chr8:2426352-2426371 None:intergenic 30.0%
AACTATCTTTAGGTGTCTTT+AGG - Chr8:2428147-2428166 MsG0880042010.01.T01:intron 30.0%
AAGATTCACAAAGAAGTTTG+GGG - Chr8:2427954-2427973 MsG0880042010.01.T01:intron 30.0%
AGCTTAATTATGGTCGATAT+AGG - Chr8:2425710-2425729 MsG0880042010.01.T01:intron 30.0%
AGTATAAAGGAAGTCTATCA+TGG + Chr8:2426039-2426058 None:intergenic 30.0%
ATCATGACTGAAACAATCAT+TGG + Chr8:2427179-2427198 None:intergenic 30.0%
ATGTCCCAATAAACTCTTAT+TGG + Chr8:2427238-2427257 None:intergenic 30.0%
ATTCACCAAAAAGGAATGAA+GGG - Chr8:2428937-2428956 MsG0880042010.01.T01:intron 30.0%
ATTCTTTGAACAGGAAACAT+GGG - Chr8:2428826-2428845 MsG0880042010.01.T01:intron 30.0%
CAAAGAATCAATCGAAATTC+TGG + Chr8:2428814-2428833 None:intergenic 30.0%
CAAAGGTAACACTGTATTAT+TGG + Chr8:2427468-2427487 None:intergenic 30.0%
CAAATCAACTGATATAGACT+CGG + Chr8:2426353-2426372 None:intergenic 30.0%
CATTAGTATGTTTGTGTACT+CGG - Chr8:2426676-2426695 MsG0880042010.01.T01:CDS 30.0%
CTATAAATTGGATCATGCAA+TGG - Chr8:2426151-2426170 MsG0880042010.01.T01:intron 30.0%
CTATGTTTGGCAAGAAATTA+TGG - Chr8:2424294-2424313 MsG0880042010.01.T01:intron 30.0%
GAAAAAGGAGAACATAGTTA+AGG - Chr8:2426834-2426853 MsG0880042010.01.T01:intron 30.0%
GAAAATGATGAGTGATATGA+GGG + Chr8:2423961-2423980 None:intergenic 30.0%
GAAGATTCACAAAGAAGTTT+GGG - Chr8:2427953-2427972 MsG0880042010.01.T01:intron 30.0%
GAGTTTGTATGAAAATCAAG+GGG + Chr8:2427695-2427714 None:intergenic 30.0%
GCAAACTGAACCAAAAATTT+CGG + Chr8:2427917-2427936 None:intergenic 30.0%
TAACTTAATCTTTCAGCAAC+AGG - Chr8:2428101-2428120 MsG0880042010.01.T01:intron 30.0%
TACTAGTCAAATGAAAAAGG+AGG - Chr8:2428603-2428622 MsG0880042010.01.T01:intron 30.0%
TAGACAATTTAGGCTATGTT+TGG - Chr8:2424281-2424300 MsG0880042010.01.T01:intron 30.0%
TATTCACCAAAAAGGAATGA+AGG - Chr8:2428936-2428955 MsG0880042010.01.T01:intron 30.0%
TCAATTTCTTACTTTGATGG+GGG - Chr8:2424742-2424761 MsG0880042010.01.T01:intron 30.0%
TCATTTCTGAATCATAGCTA+TGG + Chr8:2428718-2428737 None:intergenic 30.0%
TGATAAGAGCAACTATCTTT+AGG - Chr8:2428137-2428156 MsG0880042010.01.T01:intron 30.0%
TTAATTATGGTCGATATAGG+TGG - Chr8:2425713-2425732 MsG0880042010.01.T01:intron 30.0%
! ATTATGAGTACGTTGATAAG+TGG + Chr8:2425618-2425637 None:intergenic 30.0%
! GTAAAGAATTTTTACGGAGT+AGG - Chr8:2428445-2428464 MsG0880042010.01.T01:intron 30.0%
! TTTCGATTGATTCTTTGAAC+AGG - Chr8:2428817-2428836 MsG0880042010.01.T01:intron 30.0%
!! ATGACACTTTTTAATGCAAG+AGG - Chr8:2429027-2429046 MsG0880042010.01.T01:CDS 30.0%
!! ATTCTAAAATGAACGATGCA+TGG + Chr8:2429067-2429086 None:intergenic 30.0%
!! CATATTGATTCCATAAGTGA+GGG + Chr8:2427632-2427651 None:intergenic 30.0%
!! TCATATTGATTCCATAAGTG+AGG + Chr8:2427633-2427652 None:intergenic 30.0%
!! TGACACTTTTTAATGCAAGA+GGG - Chr8:2429028-2429047 MsG0880042010.01.T01:CDS 30.0%
!!! ACAAACTCTTTTTTCGTCAT+CGG - Chr8:2427707-2427726 MsG0880042010.01.T01:intron 30.0%
!!! ATGTTTGATTTTGTTGTTGG+TGG - Chr8:2424851-2424870 MsG0880042010.01.T01:intron 30.0%
!!! ATTTTTTTGGTCTTAACCTC+TGG - Chr8:2427085-2427104 MsG0880042010.01.T01:CDS 30.0%
!!! CAAAAAAGTGGTGTTTTTTC+AGG - Chr8:2425957-2425976 MsG0880042010.01.T01:intron 30.0%
!!! CTTTTTTCAAGTAAGATGAC+GGG - Chr8:2424491-2424510 MsG0880042010.01.T01:intron 30.0%
!!! GAAAAAACACCACTTTTTTG+CGG + Chr8:2425957-2425976 None:intergenic 30.0%
!!! GACAAGTCACTTTTTTCATA+TGG - Chr8:2425853-2425872 MsG0880042010.01.T01:intron 30.0%
!!! TGTTTGATTTTGTTGTTGGT+GGG - Chr8:2424852-2424871 MsG0880042010.01.T01:intron 30.0%
!!! TTGGATTATTTTTTTGGGTG+GGG - Chr8:2424683-2424702 MsG0880042010.01.T01:intron 30.0%
AATGTCTAATTGTAGGTTGC+AGG - Chr8:2428765-2428784 MsG0880042010.01.T01:intron 35.0%
AATTGGATCATGCAATGGTT+TGG - Chr8:2426156-2426175 MsG0880042010.01.T01:intron 35.0%
AGTCCGGTACTATGATAAAA+AGG + Chr8:2426935-2426954 None:intergenic 35.0%
AGTCTGGAAAAATTGTTGCT+TGG - Chr8:2428913-2428932 MsG0880042010.01.T01:intron 35.0%
ATGATAAGATCAAGTACCTC+TGG - Chr8:2426515-2426534 MsG0880042010.01.T01:CDS 35.0%
ATTCAATCTCTCGACAGTTA+AGG - Chr8:2425810-2425829 MsG0880042010.01.T01:intron 35.0%
CACAACATCATCATCATCAA+TGG - Chr8:2423787-2423806 MsG0880042010.01.T01:three_prime_UTR 35.0%
CGAGTACACAAACATACTAA+TGG + Chr8:2426678-2426697 None:intergenic 35.0%
CGAGTCTATATCAGTTGATT+TGG - Chr8:2426351-2426370 MsG0880042010.01.T01:intron 35.0%
CTAGATATATCTTCAGCTTC+CGG - Chr8:2428000-2428019 MsG0880042010.01.T01:intron 35.0%
CTATTGAATGGCTTAAATGG+GGG - Chr8:2424707-2424726 MsG0880042010.01.T01:intron 35.0%
CTGAAAGATTAAGTTAAGCC+GGG + Chr8:2428097-2428116 None:intergenic 35.0%
CTTGCGAAGAAAATTCTGAA+TGG - Chr8:2428024-2428043 MsG0880042010.01.T01:intron 35.0%
GAGAAGTGACTGAAATGAAA+AGG + Chr8:2424035-2424054 None:intergenic 35.0%
GAGTTTATGGGAACAACTTA+TGG + Chr8:2428334-2428353 None:intergenic 35.0%
GATTCTTTGAACAGGAAACA+TGG - Chr8:2428825-2428844 MsG0880042010.01.T01:intron 35.0%
GCACTCATACAGCTTAATTA+TGG - Chr8:2425700-2425719 MsG0880042010.01.T01:intron 35.0%
GCTATTGAATGGCTTAAATG+GGG - Chr8:2424706-2424725 MsG0880042010.01.T01:intron 35.0%
GCTGAAAGATTAAGTTAAGC+CGG + Chr8:2428098-2428117 None:intergenic 35.0%
GCTGCAAATGAAATCTTCAA+TGG + Chr8:2428856-2428875 None:intergenic 35.0%
GGAAAATGATGAGTGATATG+AGG + Chr8:2423962-2423981 None:intergenic 35.0%
GGAAGATTCACAAAGAAGTT+TGG - Chr8:2427952-2427971 MsG0880042010.01.T01:intron 35.0%
GGCTATTGAATGGCTTAAAT+GGG - Chr8:2424705-2424724 MsG0880042010.01.T01:intron 35.0%
GTAACACTGTATTATTGGAC+TGG + Chr8:2427463-2427482 None:intergenic 35.0%
GTCAAATGAAAAAGGAGGAA+CGG - Chr8:2428608-2428627 MsG0880042010.01.T01:intron 35.0%
GTCATGATTCAAACTCTGAT+AGG - Chr8:2427191-2427210 MsG0880042010.01.T01:CDS 35.0%
TAAGCTATAAGCTTAAAGGG+TGG - Chr8:2424599-2424618 MsG0880042010.01.T01:intron 35.0%
TATTGAATGGCTTAAATGGG+GGG - Chr8:2424708-2424727 MsG0880042010.01.T01:intron 35.0%
TCATTTGACTAGTATAGCCA+AGG + Chr8:2428597-2428616 None:intergenic 35.0%
TCCAATATACATGTTCGTGT+CGG - Chr8:2425086-2425105 MsG0880042010.01.T01:CDS 35.0%
TCCAATATCTGTGTTTGTGT+CGG - Chr8:2425457-2425476 MsG0880042010.01.T01:intron 35.0%
TGAAAGATTAAGTTAAGCCG+GGG + Chr8:2428096-2428115 None:intergenic 35.0%
TGATCTAGAAGCTCTTACAA+TGG + Chr8:2427433-2427452 None:intergenic 35.0%
TGTTTGGTAAAATTAGCCGT+TGG - Chr8:2424414-2424433 MsG0880042010.01.T01:intron 35.0%
TTGCTTGGTATTCACCAAAA+AGG - Chr8:2428928-2428947 MsG0880042010.01.T01:intron 35.0%
TTTCTGAATCATAGCTATGG+TGG + Chr8:2428715-2428734 None:intergenic 35.0%
! AATTTTTACGGAGTAGGAAG+AGG - Chr8:2428451-2428470 MsG0880042010.01.T01:intron 35.0%
! AGAGAAATTTTCTCTGGTCT+AGG - Chr8:2427346-2427365 MsG0880042010.01.T01:intron 35.0%
! ATAAACATTCGTGACTGGTT+GGG + Chr8:2428358-2428377 None:intergenic 35.0%
! ATAAGCTAGCTTGTAGCTTA+TGG - Chr8:2424364-2424383 MsG0880042010.01.T01:intron 35.0%
! ATCACTCATCATTTTCCCTT+TGG - Chr8:2423965-2423984 MsG0880042010.01.T01:three_prime_UTR 35.0%
! CAACTATCATTTTCCTAGGA+CGG + Chr8:2425759-2425778 None:intergenic 35.0%
! CGGAAAGAACCTTATTGATT+CGG - Chr8:2427843-2427862 MsG0880042010.01.T01:intron 35.0%
! GTTAGGAGAGAAATTTTCTC+TGG - Chr8:2427340-2427359 MsG0880042010.01.T01:intron 35.0%
! TAAGCTAGCTTGTAGCTTAT+GGG - Chr8:2424365-2424384 MsG0880042010.01.T01:intron 35.0%
! TCTGTTTTCATAAGCTACCT+TGG - Chr8:2428292-2428311 MsG0880042010.01.T01:intron 35.0%
! TTTGGGATGCATAAGAACAA+CGG - Chr8:2426409-2426428 MsG0880042010.01.T01:CDS 35.0%
!! AGCCATTGATTCATCATTCT+GGG - Chr8:2423823-2423842 MsG0880042010.01.T01:three_prime_UTR 35.0%
!! ATCTGTGTTGTTTGGTTTAG+AGG - Chr8:2425909-2425928 MsG0880042010.01.T01:intron 35.0%
!! GGAAAGAACCTTATTGATTC+GGG - Chr8:2427844-2427863 MsG0880042010.01.T01:intron 35.0%
!! GGAGTTGTTGGTTATTTTCA+AGG - Chr8:2425057-2425076 MsG0880042010.01.T01:CDS 35.0%
!! TCTGTGTTGTTTGGTTTAGA+GGG - Chr8:2425910-2425929 MsG0880042010.01.T01:intron 35.0%
!! TTGATGATGATGATGTTGTG+CGG + Chr8:2423787-2423806 None:intergenic 35.0%
!!! AAAAGTGGTGTTTTTTCAGG+AGG - Chr8:2425960-2425979 MsG0880042010.01.T01:intron 35.0%
!!! AGGGTGGTTTTTGTTTTTTG+TGG - Chr8:2424615-2424634 MsG0880042010.01.T01:intron 35.0%
!!! GGGTGGTTTTTGTTTTTTGT+GGG - Chr8:2424616-2424635 MsG0880042010.01.T01:intron 35.0%
!!! GTTTGATTTTGTTGTTGGTG+GGG - Chr8:2424853-2424872 MsG0880042010.01.T01:intron 35.0%
!!! TGGATTATTTTTTTGGGTGG+GGG - Chr8:2424684-2424703 MsG0880042010.01.T01:intron 35.0%
AAAGGAACCATACTCCTTCT+TGG + Chr8:2424017-2424036 None:intergenic 40.0%
AACCATGATTGTAGACACCT+TGG - Chr8:2428577-2428596 MsG0880042010.01.T01:intron 40.0%
AACGATGACCAGTGAAATCA+AGG + Chr8:2424057-2424076 None:intergenic 40.0%
AAGGAACCATACTCCTTCTT+GGG + Chr8:2424016-2424035 None:intergenic 40.0%
ACCAAAAAGGAATGAAGGGA+TGG - Chr8:2428941-2428960 MsG0880042010.01.T01:intron 40.0%
ACCGACACAAACACAGATAT+TGG + Chr8:2425461-2425480 None:intergenic 40.0%
ACCGACACGAACATGTATAT+TGG + Chr8:2425090-2425109 None:intergenic 40.0%
AGGAGATAAAGCAAACTGTG+AGG + Chr8:2425884-2425903 None:intergenic 40.0%
CATAAACATTCGTGACTGGT+TGG + Chr8:2428359-2428378 None:intergenic 40.0%
CATCATCATCATCAATGGCT+AGG - Chr8:2423792-2423811 MsG0880042010.01.T01:three_prime_UTR 40.0%
CCAAACAACACAGATGTTGA+AGG + Chr8:2425904-2425923 None:intergenic 40.0%
CTGAAATTGGCATTGTGTTC+CGG - Chr8:2428669-2428688 MsG0880042010.01.T01:intron 40.0%
GAATCTGCTCGAAATACAAC+TGG + Chr8:2428792-2428811 None:intergenic 40.0%
GGGCTATTGAATGGCTTAAA+TGG - Chr8:2424704-2424723 MsG0880042010.01.T01:intron 40.0%
GTCCCAGAATGATGAATCAA+TGG + Chr8:2423828-2423847 None:intergenic 40.0%
GTTACAAACTCCCTCACTTA+TGG - Chr8:2427619-2427638 MsG0880042010.01.T01:intron 40.0%
TCACTTCTCCTTGATTTCAC+TGG - Chr8:2424046-2424065 MsG0880042010.01.T01:CDS 40.0%
TCAGCATAAACATTCGTGAC+TGG + Chr8:2428363-2428382 None:intergenic 40.0%
TGACCACAAAGGAAGATACT+GGG - Chr8:2426321-2426340 MsG0880042010.01.T01:intron 40.0%
TGATATGAGGGAGTTGTTGA+TGG + Chr8:2423949-2423968 None:intergenic 40.0%
TGTTCTTATGCATCCCAAAG+CGG + Chr8:2426408-2426427 None:intergenic 40.0%
TTATTACTGGTGCCTTGTGT+TGG - Chr8:2425427-2425446 MsG0880042010.01.T01:intron 40.0%
TTCTGATCACGATCTTACAG+TGG - Chr8:2426273-2426292 MsG0880042010.01.T01:intron 40.0%
TTGACCACAAAGGAAGATAC+TGG - Chr8:2426320-2426339 MsG0880042010.01.T01:intron 40.0%
TTGATTTCACTGGTCATCGT+TGG - Chr8:2424056-2424075 MsG0880042010.01.T01:CDS 40.0%
TTGTGGTCAACAAACAACTG+AGG + Chr8:2426310-2426329 None:intergenic 40.0%
TTTCGTCATCGGTGAATTGA+TGG - Chr8:2427718-2427737 MsG0880042010.01.T01:intron 40.0%
TTTCTTCTCTTTGACACAGC+TGG + Chr8:2427877-2427896 None:intergenic 40.0%
! AAGCTAGCTTGTAGCTTATG+GGG - Chr8:2424366-2424385 MsG0880042010.01.T01:intron 40.0%
! ACCATCCCTTCATTCCTTTT+TGG + Chr8:2428945-2428964 None:intergenic 40.0%
! CAGAATTTTCTTCGCAAGTC+CGG + Chr8:2428022-2428041 None:intergenic 40.0%
! CAGTTGTTTGTTGACCACAA+AGG - Chr8:2426310-2426329 MsG0880042010.01.T01:intron 40.0%
! CCTTCAACATCTGTGTTGTT+TGG - Chr8:2425901-2425920 MsG0880042010.01.T01:intron 40.0%
! GCACTGACACTTCAGATTAA+AGG - Chr8:2425317-2425336 MsG0880042010.01.T01:intron 40.0%
! GCAGCAGTATCTGGAATTAT+TGG - Chr8:2426607-2426626 MsG0880042010.01.T01:CDS 40.0%
! TAAACATTCGTGACTGGTTG+GGG + Chr8:2428357-2428376 None:intergenic 40.0%
! TGATGATGATGATGTTGTGC+GGG + Chr8:2423786-2423805 None:intergenic 40.0%
!! AGATGACGGGTAAAATTGAG+AGG - Chr8:2424504-2424523 MsG0880042010.01.T01:intron 40.0%
!! AGGTGTCTTTAGGCCATTTT+TGG - Chr8:2428157-2428176 MsG0880042010.01.T01:intron 40.0%
!! CAGCCATTGATTCATCATTC+TGG - Chr8:2423822-2423841 MsG0880042010.01.T01:three_prime_UTR 40.0%
!! GTTTGCTATACTTTGCAGCA+AGG - Chr8:2427931-2427950 MsG0880042010.01.T01:intron 40.0%
AAGCCTAGTGAGTGAGTCAT+TGG - Chr8:2427298-2427317 MsG0880042010.01.T01:intron 45.0%
AAGCTACCTTGGAGAGCTTA+TGG - Chr8:2428303-2428322 MsG0880042010.01.T01:intron 45.0%
AGAAGTTTGGGGACTTAACC+CGG - Chr8:2427965-2427984 MsG0880042010.01.T01:intron 45.0%
AGCCTAGTGAGTGAGTCATT+GGG - Chr8:2427299-2427318 MsG0880042010.01.T01:intron 45.0%
ATCATAAGTAACAGCCGCCT+TGG + Chr8:2426500-2426519 None:intergenic 45.0%
ATTCCAGATACTGCTGCATG+AGG + Chr8:2426604-2426623 None:intergenic 45.0%
ATTGGCATTGTGTTCCGGAT+CGG - Chr8:2428674-2428693 MsG0880042010.01.T01:intron 45.0%
CATCCCAGTATCTTCCTTTG+TGG + Chr8:2426327-2426346 None:intergenic 45.0%
CTAAACATGTGATGCCGTGT+TGG + Chr8:2425378-2425397 None:intergenic 45.0%
GAGGAAGGGATAATGCCAAA+GGG + Chr8:2423983-2424002 None:intergenic 45.0%
GATCCTCTCCCGAATCAATA+AGG + Chr8:2427855-2427874 None:intergenic 45.0%
GGATCTGGTAATCCGGAATT+CGG - Chr8:2427131-2427150 MsG0880042010.01.T01:CDS 45.0%
GTTAGGAGTTCGTAGAACTC+TGG - Chr8:2427381-2427400 MsG0880042010.01.T01:intron 45.0%
GTTCTTTCCGTTCCAAATCC+AGG + Chr8:2427833-2427852 None:intergenic 45.0%
TAAGAACAACGGTAGTCCTC+AGG - Chr8:2426420-2426439 MsG0880042010.01.T01:CDS 45.0%
TATCTAGACGAGCATCTACC+CGG + Chr8:2427987-2428006 None:intergenic 45.0%
TCAAACTCTGATAGGACCCT+GGG - Chr8:2427199-2427218 MsG0880042010.01.T01:CDS 45.0%
TCAGTTGCATTAGTAGCCTG+AGG + Chr8:2426439-2426458 None:intergenic 45.0%
TCCACAAAACCTCGATGGTT+GGG - Chr8:2423862-2423881 MsG0880042010.01.T01:three_prime_UTR 45.0%
TCCACATTACCACGGACTTA+TGG - Chr8:2426576-2426595 MsG0880042010.01.T01:CDS 45.0%
TGAGGAAGGGATAATGCCAA+AGG + Chr8:2423984-2424003 None:intergenic 45.0%
TGATCACGATCTTACAGTGG+AGG - Chr8:2426276-2426295 MsG0880042010.01.T01:intron 45.0%
TGTGCTTCCTGGATTTGGAA+CGG - Chr8:2427823-2427842 MsG0880042010.01.T01:intron 45.0%
TTCAAACTCTGATAGGACCC+TGG - Chr8:2427198-2427217 MsG0880042010.01.T01:CDS 45.0%
TTCCCAATGACTCACTCACT+AGG + Chr8:2427304-2427323 None:intergenic 45.0%
TTGGACACAACACCAACACA+AGG + Chr8:2425442-2425461 None:intergenic 45.0%
TTTCGTGTCTGACACCAACA+CGG - Chr8:2425361-2425380 MsG0880042010.01.T01:intron 45.0%
! AAACATTCGTGACTGGTTGG+GGG + Chr8:2428356-2428375 None:intergenic 45.0%
! ACCATAAGTCCGTGGTAATG+TGG + Chr8:2426580-2426599 None:intergenic 45.0%
! ACTGAAGCGTCAAGAGGAAT+AGG + Chr8:2423908-2423927 None:intergenic 45.0%
! AGCCAAGGTGTCTACAATCA+TGG + Chr8:2428582-2428601 None:intergenic 45.0%
! CAAGTACCTCTGGAGAAACA+CGG - Chr8:2426525-2426544 MsG0880042010.01.T01:CDS 45.0%
! CTGAAGCGTCAAGAGGAATA+GGG + Chr8:2423907-2423926 None:intergenic 45.0%
! GGCTTGTTTCCACATTACCA+CGG - Chr8:2426568-2426587 MsG0880042010.01.T01:CDS 45.0%
! TTGTTTGGTTTAGAGGGCCA+TGG - Chr8:2425916-2425935 MsG0880042010.01.T01:intron 45.0%
!! ACTCCACATCGCTAGCTTTA+GGG + Chr8:2428896-2428915 None:intergenic 45.0%
!! AGAAAAGCGCCGCAAAAAAG+TGG - Chr8:2425945-2425964 MsG0880042010.01.T01:intron 45.0%
!! GAACCTTATTGATTCGGGAG+AGG - Chr8:2427849-2427868 MsG0880042010.01.T01:intron 45.0%
!! GGCGCTTTTCTTTTTCACCA+TGG + Chr8:2425936-2425955 None:intergenic 45.0%
AAAGCTAGCGATGTGGAGTC+TGG - Chr8:2428897-2428916 MsG0880042010.01.T01:intron 50.0%
ACGAACTCCTAACCAGAGCT+AGG + Chr8:2427374-2427393 None:intergenic 50.0%
AGGGTCACCAGGAACAAACT+TGG + Chr8:2423888-2423907 None:intergenic 50.0%
ATCTAGACGAGCATCTACCC+GGG + Chr8:2427986-2428005 None:intergenic 50.0%
ATCTTACAGTGGAGGCAGCA+TGG - Chr8:2426284-2426303 MsG0880042010.01.T01:intron 50.0%
CAACTGGACAATTCCGTCCT+AGG - Chr8:2425743-2425762 MsG0880042010.01.T01:intron 50.0%
CCAGCTGTGATAAACCGATC+CGG + Chr8:2428691-2428710 None:intergenic 50.0%
CCATACTCCTTCTTGGGAGA+AGG + Chr8:2424010-2424029 None:intergenic 50.0%
CCTTCTCCCAAGAAGGAGTA+TGG - Chr8:2424007-2424026 MsG0880042010.01.T01:three_prime_UTR 50.0%
CTCCACAAAACCTCGATGGT+TGG - Chr8:2423861-2423880 MsG0880042010.01.T01:three_prime_UTR 50.0%
CTGGTAATCCGGAATTCGGA+CGG - Chr8:2427135-2427154 MsG0880042010.01.T01:CDS 50.0%
CTTATCTCCCGTCCGAATTC+CGG + Chr8:2427146-2427165 None:intergenic 50.0%
GAAGTTTGGGGACTTAACCC+GGG - Chr8:2427966-2427985 MsG0880042010.01.T01:intron 50.0%
GAGACTGAGGAGGAATACGA+AGG - Chr8:2426547-2426566 MsG0880042010.01.T01:CDS 50.0%
GATTAAGTTAAGCCGGGGTG+AGG + Chr8:2428091-2428110 None:intergenic 50.0%
GCATGTCCATAAGCTCTCCA+AGG + Chr8:2428312-2428331 None:intergenic 50.0%
GCTTAAATGGGGGGAAGTAG+GGG - Chr8:2424717-2424736 MsG0880042010.01.T01:intron 50.0%
GGAAAGGGGATCTGGTAATC+CGG - Chr8:2427124-2427143 MsG0880042010.01.T01:CDS 50.0%
GGCTTAAATGGGGGGAAGTA+GGG - Chr8:2424716-2424735 MsG0880042010.01.T01:intron 50.0%
GTACCTCATGCAGCAGTATC+TGG - Chr8:2426598-2426617 MsG0880042010.01.T01:CDS 50.0%
GTCTTAACCTCTGGTCCCTA+GGG - Chr8:2427094-2427113 MsG0880042010.01.T01:CDS 50.0%
TCAAGAGGAATAGGGTCACC+AGG + Chr8:2423899-2423918 None:intergenic 50.0%
TCCTCTCCACAAAACCTCGA+TGG - Chr8:2423857-2423876 MsG0880042010.01.T01:three_prime_UTR 50.0%
TCTGATAGGACCCTGGGTTT+GGG - Chr8:2427205-2427224 MsG0880042010.01.T01:CDS 50.0%
TCTTAACCTCTGGTCCCTAG+GGG - Chr8:2427095-2427114 MsG0880042010.01.T01:CDS 50.0%
TGACCCTAAAGCTAGCGATG+TGG - Chr8:2428890-2428909 MsG0880042010.01.T01:intron 50.0%
TGGATTAAGGCCCAAACCCA+GGG + Chr8:2427218-2427237 None:intergenic 50.0%
TGGCTTAAATGGGGGGAAGT+AGG - Chr8:2424715-2424734 MsG0880042010.01.T01:intron 50.0%
TGGTAATCCGGAATTCGGAC+GGG - Chr8:2427136-2427155 MsG0880042010.01.T01:CDS 50.0%
TTGGATTAAGGCCCAAACCC+AGG + Chr8:2427219-2427238 None:intergenic 50.0%
TTTGGGTGGGGGCTATTGAA+TGG - Chr8:2424695-2424714 MsG0880042010.01.T01:intron 50.0%
! CATGAGGTACCATAAGTCCG+TGG + Chr8:2426588-2426607 None:intergenic 50.0%
! CTGGAAACTGAAGCGTCAAG+AGG + Chr8:2423914-2423933 None:intergenic 50.0%
! GACTGGTTGGGGGAGTTTAT+GGG + Chr8:2428346-2428365 None:intergenic 50.0%
! GTTCCAAATCCAGGAAGCAC+AGG + Chr8:2427824-2427843 None:intergenic 50.0%
! TATAGGTGGCTTGCAGCAAC+TGG - Chr8:2425727-2425746 MsG0880042010.01.T01:intron 50.0%
! TGACTGGTTGGGGGAGTTTA+TGG + Chr8:2428347-2428366 None:intergenic 50.0%
! TGGGACATCCCCTGAGTTTT+AGG - Chr8:2427250-2427269 MsG0880042010.01.T01:CDS 50.0%
!! ACCATCGAGGTTTTGTGGAG+AGG + Chr8:2423861-2423880 None:intergenic 50.0%
!! GACTCCACATCGCTAGCTTT+AGG + Chr8:2428897-2428916 None:intergenic 50.0%
!! TTGATGGCGATAGAGTCTGC+TGG + Chr8:2423933-2423952 None:intergenic 50.0%
AACCCTGGCAGTAGAGACAG+CGG + Chr8:2426472-2426491 None:intergenic 55.0%
ACTGCCAGGGTTATGTGCCA+AGG - Chr8:2426480-2426499 MsG0880042010.01.T01:CDS 55.0%
CAAACTTGGCCCAACCATCG+AGG + Chr8:2423874-2423893 None:intergenic 55.0%
CAGTCTCCGTGTTTCTCCAG+AGG + Chr8:2426534-2426553 None:intergenic 55.0%
CTCAGCTCCTTCTCCCAAGA+AGG - Chr8:2424000-2424019 MsG0880042010.01.T01:three_prime_UTR 55.0%
CTCTGATAGGACCCTGGGTT+TGG - Chr8:2427204-2427223 MsG0880042010.01.T01:CDS 55.0%
CTGGAGAAACACGGAGACTG+AGG - Chr8:2426534-2426553 MsG0880042010.01.T01:CDS 55.0%
CTTCTTGGGAGAAGGAGCTG+AGG + Chr8:2424002-2424021 None:intergenic 55.0%
GAGAAACACGGAGACTGAGG+AGG - Chr8:2426537-2426556 MsG0880042010.01.T01:CDS 55.0%
GCTCCTGTGCTTCCTGGATT+TGG - Chr8:2427818-2427837 MsG0880042010.01.T01:intron 55.0%
GGGGATTGCGATACCGCTTT+GGG - Chr8:2426392-2426411 MsG0880042010.01.T01:intron 55.0%
GGTCTTAACCTCTGGTCCCT+AGG - Chr8:2427093-2427112 MsG0880042010.01.T01:CDS 55.0%
TGGGAGAAGGAGCTGAGGAA+GGG + Chr8:2423997-2424016 None:intergenic 55.0%
TTGGGAGAAGGAGCTGAGGA+AGG + Chr8:2423998-2424017 None:intergenic 55.0%
! CCGGATCGGTTTATCACAGC+TGG - Chr8:2428688-2428707 MsG0880042010.01.T01:intron 55.0%
! GCCCAACCATCGAGGTTTTG+TGG + Chr8:2423866-2423885 None:intergenic 55.0%
! GGTTGGGCCAAGTTTGTTCC+TGG - Chr8:2423878-2423897 MsG0880042010.01.T01:three_prime_UTR 55.0%
!! CTAGGAGCCTAGCTCTGGTT+AGG - Chr8:2427364-2427383 MsG0880042010.01.T01:intron 55.0%
AACAACCGTCAGCCTCACCC+CGG - Chr8:2428076-2428095 MsG0880042010.01.T01:intron 60.0%
ACACCGCTGTCTCTACTGCC+AGG - Chr8:2426466-2426485 MsG0880042010.01.T01:CDS 60.0%
ACCTCTGGTCCCTAGGGGAA+AGG - Chr8:2427100-2427119 MsG0880042010.01.T01:CDS 60.0%
CAATCCCCGACGAGCTGCAA+GGG + Chr8:2426380-2426399 None:intergenic 60.0%
CACCGCTGTCTCTACTGCCA+GGG - Chr8:2426467-2426486 MsG0880042010.01.T01:CDS 60.0%
CAGGTAGCTCCTGTGCTTCC+TGG - Chr8:2427812-2427831 MsG0880042010.01.T01:intron 60.0%
CCCTAGGGGAAAGGGGGAAA+GGG - Chr8:2427109-2427128 MsG0880042010.01.T01:CDS 60.0%
CCCTTTCCCCCTTTCCCCTA+GGG + Chr8:2427112-2427131 None:intergenic 60.0%
CCTAGGGGAAAGGGGGAAAG+GGG - Chr8:2427110-2427129 MsG0880042010.01.T01:CDS 60.0%
CCTCTGGTCCCTAGGGGAAA+GGG - Chr8:2427101-2427120 MsG0880042010.01.T01:CDS 60.0%
CGGGGATTGCGATACCGCTT+TGG - Chr8:2426391-2426410 MsG0880042010.01.T01:intron 60.0%
CTCTGGTCCCTAGGGGAAAG+GGG - Chr8:2427102-2427121 MsG0880042010.01.T01:CDS 60.0%
CTGGTCTAGGAGCCTAGCTC+TGG - Chr8:2427359-2427378 MsG0880042010.01.T01:intron 60.0%
GCCAGGGTTATGTGCCAAGG+CGG - Chr8:2426483-2426502 MsG0880042010.01.T01:CDS 60.0%
GGAAAGGGGGAAAGGGGATC+TGG - Chr8:2427116-2427135 MsG0880042010.01.T01:CDS 60.0%
TCCCTAGGGGAAAGGGGGAA+AGG - Chr8:2427108-2427127 MsG0880042010.01.T01:CDS 60.0%
TCTGGTCCCTAGGGGAAAGG+GGG - Chr8:2427103-2427122 MsG0880042010.01.T01:CDS 60.0%
TGGCATCCCTTGCAGCTCGT+CGG - Chr8:2426371-2426390 MsG0880042010.01.T01:intron 60.0%
TTAAGCCGGGGTGAGGCTGA+CGG + Chr8:2428084-2428103 None:intergenic 60.0%
CCCCTTTCCCCCTTTCCCCT+AGG + Chr8:2427113-2427132 None:intergenic 65.0%
CCCTTTCCCCTAGGGACCAG+AGG + Chr8:2427104-2427123 None:intergenic 65.0%
GCAATCCCCGACGAGCTGCA+AGG + Chr8:2426381-2426400 None:intergenic 65.0%
GCATCCCTTGCAGCTCGTCG+GGG - Chr8:2426373-2426392 MsG0880042010.01.T01:intron 65.0%
GCCGCCTTGGCACATAACCC+TGG + Chr8:2426487-2426506 None:intergenic 65.0%
GGCATCCCTTGCAGCTCGTC+GGG - Chr8:2426372-2426391 MsG0880042010.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 2423757 2429269 2423757 ID=MsG0880042010.01;Name=MsG0880042010.01
Chr8 mRNA 2423757 2429269 2423757 ID=MsG0880042010.01.T01;Parent=MsG0880042010.01;Name=MsG0880042010.01.T01;_AED=0.37;_eAED=0.37;_QI=49|1|1|1|1|1|5|280|465
Chr8 exon 2423757 2424246 2423757 ID=MsG0880042010.01.T01:exon:1847;Parent=MsG0880042010.01.T01
Chr8 exon 2424904 2425211 2424904 ID=MsG0880042010.01.T01:exon:1846;Parent=MsG0880042010.01.T01
Chr8 exon 2426398 2426755 2426398 ID=MsG0880042010.01.T01:exon:1845;Parent=MsG0880042010.01.T01
Chr8 exon 2427045 2427294 2427045 ID=MsG0880042010.01.T01:exon:1844;Parent=MsG0880042010.01.T01
Chr8 exon 2428949 2429269 2428949 ID=MsG0880042010.01.T01:exon:1843;Parent=MsG0880042010.01.T01
Chr8 five_prime_UTR 2429221 2429269 2429221 ID=MsG0880042010.01.T01:five_prime_utr;Parent=MsG0880042010.01.T01
Chr8 CDS 2428949 2429220 2428949 ID=MsG0880042010.01.T01:cds;Parent=MsG0880042010.01.T01
Chr8 CDS 2427045 2427294 2427045 ID=MsG0880042010.01.T01:cds;Parent=MsG0880042010.01.T01
Chr8 CDS 2426398 2426755 2426398 ID=MsG0880042010.01.T01:cds;Parent=MsG0880042010.01.T01
Chr8 CDS 2424904 2425211 2424904 ID=MsG0880042010.01.T01:cds;Parent=MsG0880042010.01.T01
Chr8 CDS 2424037 2424246 2424037 ID=MsG0880042010.01.T01:cds;Parent=MsG0880042010.01.T01
Chr8 three_prime_UTR 2423757 2424036 2423757 ID=MsG0880042010.01.T01:three_prime_utr;Parent=MsG0880042010.01.T01
Gene Sequence

>MsG0880042010.01.T01

ATGGCTAGGCTCAGAACAGCCATTGATTCATCATTCTGGGACTTAAACATTTCCTCTCCACAAAACCTCGATGGTTGGGCCAAGTTTGTTCCTGGTGACCCTATTCCTCTTGACGCTTCAGTTTCCAGCAGACTCTATCGCCATCAACAACTCCCTCATATCACTCATCATTTTCCCTTTGGCATTATCCCTTCCTCAGCTCCTTCTCCCAAGAAGGAGTATGGTTCCTTTTCATTTCAGTCACTTCTCCTTGATTTCACTGGTCATCGTTGGTGGCTTGCAGCAACTGGACAATTCCGTCCTAGGAAAATGATAGTTGATATTAAAAATGAGATTCGTAATGCTGCTGAATTCAATCTCTCGACAGTTAAGGACGTTGCAAAGCATTTCATTGACAAGTCACTTTTTTCATATGGGTTAACCTCACAGTTTGCTTTATCTCCTTCAACATCTGTGTTGTTTGGTTTAGAGGGCCATGGTGAAAAAGAAAAGCGCCGCAAAAAAGTGGTGTTTTTTCAGGAGCTTTCTGATCACGATCTTACAGTGGAGGCAGCATGGCCTCAGTTGTTTGTTGACCACAAAGGAAGATACTGGGATGTTCCCGAGTCTATATCAGTTGATTTGGCATCCCTTGCAGCTCGTCGGGGATTGCGATACCGCTTTGGGATGCATAAGAACAACGGTAGTCCTCAGGCTACTAATGCAACTGATAGCGACACACCGCTGTCTCTACTGCCAGGGTTATGTGCCAAGGCGGCTGTTACTTATGATAAGATCAAGTACCTCTGGAGAAACACGGAGACTGAGGAGGAATACGAAGGCTTGTTTCCACATTACCACGGACTTATGGTACCTCATGCAGCAGTATCTGGAATTATTGGTAGCTCCTGTGCTTCCTGGATTTGGAACGGAAAGAACCTTATTGATTCGGGAGAGGATCCAGCTGTGTCAAAGAGAAGAAAGAGATCTAGATTTAATGCCGAAATTTTTGGTTCAGTTTGCTATACTTTGCAGCAAGGAAGATTCACAAAGAAGTTTGGGGACTTAACCCGGGTAGATGCTCGTCTAGATATATCTTCAGCTTCCGGACTTGCGAAGAAAATTCTGAATGGTTTCAAGAGTTCTAGTGCTGACGTTATTGAACAACCGTCAGCCTCACCCCGGCTTAACTTAATCTTTCAGCAACAGGTTGCAGGTCCAGTTGTATTTCGAGCAGATTCCAGAATTTCGATTGATTCTTTGAACAGGAAACATGGGATCTCCATTGAAGATTTCATTTGCAGCTTGAATTTCTACATTGACCCTAAAGCTAGCGATGTGGAGTCTGGAAAAATTGTTGCTTGGTATTCACCAAAAAGGAATGAAGGGATGGTTGAATTGCGCTTATACGAGTTTTAA
Protein sequence

>MsG0880042010.01.T01

MARLRTAIDSSFWDLNISSPQNLDGWAKFVPGDPIPLDASVSSRLYRHQQLPHITHHFPFGIIPSSAPSPKKEYGSFSFQSLLLDFTGHRWWLAATGQFRPRKMIVDIKNEIRNAAEFNLSTVKDVAKHFIDKSLFSYGLTSQFALSPSTSVLFGLEGHGEKEKRRKKVVFFQELSDHDLTVEAAWPQLFVDHKGRYWDVPESISVDLASLAARRGLRYRFGMHKNNGSPQATNATDSDTPLSLLPGLCAKAAVTYDKIKYLWRNTETEEEYEGLFPHYHGLMVPHAAVSGIIGSSCASWIWNGKNLIDSGEDPAVSKRRKRSRFNAEIFGSVCYTLQQGRFTKKFGDLTRVDARLDISSASGLAKKILNGFKSSSADVIEQPSASPRLNLIFQQQVAGPVVFRADSRISIDSLNRKHGISIEDFICSLNFYIDPKASDVESGKIVAWYSPKRNEGMVELRLYEF*