AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042490.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042490.01.T01 MTR_8g015190 97.414 116 3 0 125 240 211 326 7.89e-75 244
MsG0880042490.01.T01 MTR_8g015190 87.097 124 10 1 1 124 1 118 1.05e-67 224
MsG0880042490.01.T01 MTR_8g015190 97.414 116 3 0 125 240 201 316 7.76e-74 244
MsG0880042490.01.T01 MTR_8g015190 86.842 114 9 1 11 124 1 108 2.12e-60 206
MsG0880042490.01.T01 MTR_8g015190 47.945 73 21 1 17 89 985 1040 4.59e-11 63.2
MsG0880042490.01.T01 MTR_8g015340 64.844 128 45 0 124 251 203 330 5.62e-48 170
MsG0880042490.01.T01 MTR_8g015340 57.576 66 28 0 59 124 46 111 1.43e-17 82.4
MsG0880042490.01.T01 MTR_8g015200 72.566 113 30 1 125 237 173 284 1.28e-46 166
MsG0880042490.01.T01 MTR_8g015200 60.317 63 23 1 62 122 15 77 2.54e-16 78.6
MsG0880042490.01.T01 MTR_8g015150 62.295 122 45 1 124 245 185 305 6.52e-44 157
MsG0880042490.01.T01 MTR_8g015150 39.744 156 66 5 11 161 1 133 2.55e-21 93.2
MsG0880042490.01.T01 MTR_8g014930 62.097 124 46 1 122 245 188 310 8.58e-44 156
MsG0880042490.01.T01 MTR_8g014930 47.872 94 32 1 31 124 25 101 1.49e-17 82.0
MsG0880042490.01.T01 MTR_8g014930 62.097 124 46 1 122 245 188 310 9.20e-44 157
MsG0880042490.01.T01 MTR_8g014930 47.872 94 32 1 31 124 25 101 1.22e-17 82.4
MsG0880042490.01.T01 MTR_8g015150 62.295 122 45 1 124 245 185 305 1.00e-43 157
MsG0880042490.01.T01 MTR_8g015150 39.744 156 66 5 11 161 1 133 2.53e-21 93.2
MsG0880042490.01.T01 MTR_8g014700 63.115 122 42 2 117 237 186 305 1.49e-43 156
MsG0880042490.01.T01 MTR_8g014700 56.250 112 31 2 14 124 8 102 1.45e-28 114
MsG0880042490.01.T01 MTR_8g015150 62.295 122 45 1 124 245 185 305 2.04e-43 157
MsG0880042490.01.T01 MTR_8g015150 39.744 156 66 5 11 161 1 133 3.60e-21 92.8
MsG0880042490.01.T01 MTR_8g014930 62.097 124 46 1 122 245 188 310 2.08e-43 156
MsG0880042490.01.T01 MTR_8g014930 47.872 94 32 1 31 124 25 101 1.72e-17 82.0
MsG0880042490.01.T01 MTR_8g014930 62.097 124 46 1 122 245 183 305 2.25e-43 156
MsG0880042490.01.T01 MTR_8g014930 47.872 94 32 1 31 124 20 96 1.61e-17 82.0
MsG0880042490.01.T01 MTR_8g014700 63.115 122 42 2 117 237 186 305 2.62e-43 156
MsG0880042490.01.T01 MTR_8g014700 56.250 112 31 2 14 124 8 102 1.09e-28 114
MsG0880042490.01.T01 MTR_8g014700 63.115 122 42 2 117 237 186 305 2.99e-43 156
MsG0880042490.01.T01 MTR_8g014700 56.250 112 31 2 14 124 8 102 1.21e-28 114
MsG0880042490.01.T01 MTR_8g014790 63.478 115 39 2 123 237 191 302 7.02e-40 146
MsG0880042490.01.T01 MTR_8g014790 54.310 116 34 3 11 124 1 99 2.56e-27 110
MsG0880042490.01.T01 MTR_8g461120 63.478 115 41 1 124 237 206 320 8.24e-39 143
MsG0880042490.01.T01 MTR_8g461120 58.594 128 32 4 1 124 1 111 8.20e-35 132
MsG0880042490.01.T01 MTR_8g461120 63.478 115 41 1 124 237 206 320 1.05e-38 143
MsG0880042490.01.T01 MTR_8g461120 58.594 128 32 4 1 124 1 111 7.05e-35 132
MsG0880042490.01.T01 MTR_8g461120 63.478 115 41 1 124 237 206 320 1.07e-38 143
MsG0880042490.01.T01 MTR_8g461120 58.594 128 32 4 1 124 1 111 8.27e-35 132
MsG0880042490.01.T01 MTR_8g014730 59.292 113 43 2 125 237 196 305 1.53e-36 136
MsG0880042490.01.T01 MTR_8g014730 55.652 115 33 2 11 124 5 102 1.77e-30 119
MsG0880042490.01.T01 MTR_8g014840 58.261 115 45 2 123 237 171 282 4.32e-36 130
MsG0880042490.01.T01 MTR_8g014840 30.328 244 115 10 12 228 1 216 5.66e-14 70.9
MsG0880042490.01.T01 MTR_8g014690 59.130 115 44 2 123 237 196 307 5.30e-34 129
MsG0880042490.01.T01 MTR_8g014690 46.491 114 42 3 13 124 8 104 1.29e-23 99.8
MsG0880042490.01.T01 MTR_8g014690 59.130 115 44 2 123 237 189 300 7.60e-34 129
MsG0880042490.01.T01 MTR_8g014690 45.614 114 44 2 12 124 1 97 1.25e-23 99.8
MsG0880042490.01.T01 MTR_8g028110 52.419 124 57 1 124 245 194 317 6.15e-33 127
MsG0880042490.01.T01 MTR_8g028110 34.783 230 118 6 11 236 5 206 3.01e-26 107
MsG0880042490.01.T01 MTR_8g014760 44.828 174 76 6 75 237 139 303 2.67e-32 124
MsG0880042490.01.T01 MTR_8g014760 56.140 114 32 2 11 124 5 100 4.51e-30 117
MsG0880042490.01.T01 MTR_8g014760 44.828 174 76 6 75 237 139 303 4.52e-32 124
MsG0880042490.01.T01 MTR_8g014760 56.140 114 32 2 11 124 5 100 8.61e-30 117
MsG0880042490.01.T01 MTR_8g014760 44.828 174 76 6 75 237 139 303 4.62e-32 124
MsG0880042490.01.T01 MTR_8g014760 56.140 114 32 2 11 124 5 100 7.15e-30 117
MsG0880042490.01.T01 MTR_8g014760 44.828 174 76 6 75 237 135 299 5.00e-32 124
MsG0880042490.01.T01 MTR_8g014760 56.140 114 32 2 11 124 1 96 8.81e-30 117
MsG0880042490.01.T01 MTR_8g015150 63.333 60 22 0 186 245 1 60 4.81e-18 83.6
MsG0880042490.01.T01 MTR_6g090615 36.667 150 84 5 90 237 166 306 3.63e-17 80.9
MsG0880042490.01.T01 MTR_2g100450 36.842 114 69 2 126 237 191 303 2.74e-16 78.6
MsG0880042490.01.T01 MTR_2g100450 36.842 114 69 2 126 237 191 303 3.10e-16 78.2
MsG0880042490.01.T01 MTR_8g015010 31.515 165 92 5 90 248 211 360 2.01e-14 72.8
MsG0880042490.01.T01 MTR_2g100470 33.043 115 73 2 126 237 176 289 6.77e-14 71.2
MsG0880042490.01.T01 MTR_6g090605 37.391 115 69 2 123 237 204 315 9.97e-14 70.5
MsG0880042490.01.T01 MTR_2g100450 35.052 97 60 2 143 237 3 98 1.04e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042490.01.T01 AT1G51890 32.661 248 119 7 18 237 3 230 1.16e-29 117
MsG0880042490.01.T01 AT2G28970 34.440 241 122 10 14 248 1 211 1.08e-28 114
MsG0880042490.01.T01 AT4G29450 41.216 148 81 4 90 237 165 306 7.53e-23 97.8
MsG0880042490.01.T01 AT4G29990 43.220 118 66 1 125 242 190 306 1.08e-22 97.1
MsG0880042490.01.T01 AT4G29990 43.220 118 66 1 125 242 190 306 1.11e-22 97.1
MsG0880042490.01.T01 AT5G59680 38.333 120 70 3 126 245 192 307 5.74e-22 95.1
MsG0880042490.01.T01 AT2G19190 38.211 123 76 0 125 247 193 315 5.43e-21 92.4
MsG0880042490.01.T01 AT2G19230 42.478 113 63 2 126 237 194 305 6.96e-21 92.0
MsG0880042490.01.T01 AT2G19230 40.833 120 68 3 116 234 185 302 9.40e-21 91.7
MsG0880042490.01.T01 AT1G51800 38.393 112 66 2 126 237 189 297 2.49e-20 90.5
MsG0880042490.01.T01 AT1G51800 36.111 108 50 2 18 123 7 97 7.71e-11 62.4
MsG0880042490.01.T01 AT5G59670 35.211 142 83 4 114 250 178 315 4.05e-20 89.7
MsG0880042490.01.T01 AT5G59670 35.211 142 83 4 114 250 178 315 4.05e-20 89.7
MsG0880042490.01.T01 AT2G14510 39.130 115 66 3 138 250 212 324 4.38e-20 89.7
MsG0880042490.01.T01 AT2G14510 39.130 115 66 3 138 250 204 316 4.41e-20 89.7
MsG0880042490.01.T01 AT2G14440 38.261 115 67 3 138 250 205 317 5.08e-20 89.4
MsG0880042490.01.T01 AT2G28970 42.241 116 61 4 136 248 64 176 3.81e-19 86.7
MsG0880042490.01.T01 AT1G07560 39.806 103 61 1 143 245 208 309 1.59e-18 85.1
MsG0880042490.01.T01 AT1G51890 45.263 95 49 2 143 237 203 294 1.64e-18 85.1
MsG0880042490.01.T01 AT1G51890 45.263 95 49 2 143 237 203 294 2.13e-18 84.7
MsG0880042490.01.T01 AT1G51890 45.263 95 49 2 143 237 203 294 2.31e-18 84.7
MsG0880042490.01.T01 AT2G28990 43.434 99 53 2 136 234 196 291 3.10e-18 84.3
MsG0880042490.01.T01 AT2G28990 43.434 99 53 2 136 234 196 291 3.10e-18 84.3
MsG0880042490.01.T01 AT5G59650 43.478 92 50 1 143 234 207 296 7.85e-18 83.2
MsG0880042490.01.T01 AT5G59650 43.478 92 50 1 143 234 207 296 9.19e-18 82.8
MsG0880042490.01.T01 AT4G29180 37.241 145 84 5 90 234 166 303 2.31e-17 81.6
MsG0880042490.01.T01 AT4G29180 37.241 145 84 5 90 234 166 303 2.33e-17 81.6
MsG0880042490.01.T01 AT4G29180 37.241 145 84 5 90 234 166 303 2.42e-17 81.6
MsG0880042490.01.T01 AT3G46330 38.318 107 60 3 143 246 209 312 4.04e-17 80.9
MsG0880042490.01.T01 AT3G46330 38.318 107 60 3 143 246 209 312 4.32e-17 80.9
MsG0880042490.01.T01 AT3G46400 33.333 159 92 5 82 240 159 303 4.93e-17 80.9
MsG0880042490.01.T01 AT1G51805 33.333 123 78 2 115 237 174 292 8.68e-17 80.1
MsG0880042490.01.T01 AT1G51830 41.053 95 53 2 143 237 18 109 1.39e-16 79.3
MsG0880042490.01.T01 AT1G51830 41.053 95 53 2 143 237 11 102 1.44e-16 79.3
MsG0880042490.01.T01 AT5G16900 38.947 95 55 2 138 232 197 288 2.88e-16 78.6
MsG0880042490.01.T01 AT5G16900 38.947 95 55 2 138 232 197 288 2.88e-16 78.6
MsG0880042490.01.T01 AT1G51810 38.835 103 58 3 143 242 73 173 3.37e-16 78.2
MsG0880042490.01.T01 AT5G16900 38.947 95 55 2 138 232 197 288 3.59e-16 78.2
MsG0880042490.01.T01 AT3G21340 36.275 102 63 1 136 237 204 303 4.69e-16 77.8
MsG0880042490.01.T01 AT3G21340 36.275 102 63 1 136 237 204 303 6.47e-16 77.4
MsG0880042490.01.T01 AT5G16900 40.000 90 51 2 143 232 16 102 6.83e-16 77.4
MsG0880042490.01.T01 AT1G51860 39.316 117 66 3 126 241 47 159 8.33e-16 77.0
MsG0880042490.01.T01 AT1G07550 34.862 109 69 2 138 246 202 308 9.43e-16 77.0
MsG0880042490.01.T01 AT1G51860 39.316 117 66 3 126 241 191 303 9.50e-16 77.0
MsG0880042490.01.T01 AT1G51805 37.234 94 57 1 144 237 177 268 1.05e-15 76.6
MsG0880042490.01.T01 AT1G51910 38.947 95 56 2 143 237 207 299 1.16e-15 76.6
MsG0880042490.01.T01 AT2G04300 35.294 102 64 1 136 237 205 304 1.85e-15 76.3
MsG0880042490.01.T01 AT2G04300 35.294 102 64 1 136 237 205 304 2.64e-15 75.5
MsG0880042490.01.T01 AT2G19210 35.714 112 71 1 126 237 195 305 5.59e-15 74.7
MsG0880042490.01.T01 AT1G05700 37.705 122 71 4 124 242 190 309 6.26e-15 74.3
MsG0880042490.01.T01 AT1G05700 37.705 122 71 4 124 242 190 309 6.82e-15 74.3
MsG0880042490.01.T01 AT1G51880 37.895 95 56 2 143 237 207 298 1.25e-14 73.6
MsG0880042490.01.T01 AT1G51880 37.895 95 56 2 143 237 225 316 1.37e-14 73.6
MsG0880042490.01.T01 AT1G51880 37.895 95 56 2 143 237 225 316 1.54e-14 73.2
MsG0880042490.01.T01 AT1G51820 33.600 125 74 4 115 237 174 291 1.79e-14 73.2
MsG0880042490.01.T01 AT3G46340 40.659 91 51 2 144 234 212 299 2.47e-14 72.8
MsG0880042490.01.T01 AT3G46370 38.947 95 55 2 143 237 120 211 3.00e-14 72.4
MsG0880042490.01.T01 AT3G46370 38.947 95 55 2 143 237 120 211 3.00e-14 72.4
MsG0880042490.01.T01 AT1G51850 34.737 95 59 2 143 237 180 271 7.47e-14 71.2
MsG0880042490.01.T01 AT1G51850 34.737 95 59 2 143 237 200 291 7.65e-14 71.2
MsG0880042490.01.T01 AT1G49100 31.915 141 86 4 97 237 170 300 5.61e-13 68.6
MsG0880042490.01.T01 AT1G51870 36.842 95 57 1 143 237 208 299 8.11e-13 68.2
MsG0880042490.01.T01 AT1G51870 36.842 95 57 1 143 237 208 299 8.15e-13 68.2
MsG0880042490.01.T01 AT1G51790 30.645 124 84 1 126 247 191 314 3.18e-12 66.6
MsG0880042490.01.T01 AT1G51790 30.645 124 84 1 126 247 191 314 3.32e-12 66.2
MsG0880042490.01.T01 AT1G51790 30.645 124 84 1 126 247 191 314 3.32e-12 66.2
MsG0880042490.01.T01 AT2G29000 28.358 134 90 4 114 246 176 304 1.27e-11 64.7
MsG0880042490.01.T01 AT3G46420 38.655 119 69 3 116 234 182 296 5.81e-11 62.8

Find 51 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGGTTTCCTTACTATTT+TGG 0.088297 8:-9482305 MsG0880042490.01.T01:CDS
CTACTACTACTTGCACTTTA+AGG 0.149584 8:-9481131 MsG0880042490.01.T01:CDS
TACACCAGTATGTATGAATT+TGG 0.173191 8:+9482034 None:intergenic
CATGAAGATGTGAAATATTC+TGG 0.189935 8:-9482089 MsG0880042490.01.T01:CDS
CAAGCAATACAGTAAGAAAA+TGG 0.198916 8:+9482323 None:intergenic
GCAGTGCTCATAACAATTTC+AGG 0.298600 8:+9481223 None:intergenic
CATTCCATTGAATTTGTAAT+GGG 0.299410 8:+9481176 None:intergenic
CAGGGCCGTCCCAATAAAAT+TGG 0.305256 8:-9481047 MsG0880042490.01.T01:CDS
CTCTACAAGAGATGTGATTT+AGG 0.314349 8:-9481489 MsG0880042490.01.T01:CDS
TCATACATACTGGTGTAAAT+AGG 0.352211 8:-9482028 MsG0880042490.01.T01:CDS
ATCAATCAGATTTGTTTATG+AGG 0.386625 8:-9482264 MsG0880042490.01.T01:CDS
TCACATCAAATATCACAATC+AGG 0.391434 8:-9481066 MsG0880042490.01.T01:CDS
AAGCAATACAGTAAGAAAAT+GGG 0.410109 8:+9482324 None:intergenic
TGTAGTTCCTGTGGAATAAT+AGG 0.412604 8:+9481990 None:intergenic
GCATTCCATTGAATTTGTAA+TGG 0.414776 8:+9481175 None:intergenic
ATGATGTTTATGACCGCATC+TGG 0.431715 8:-9481330 MsG0880042490.01.T01:CDS
CTTTAAGGAGGTTGAGAAGC+TGG 0.447377 8:-9481116 MsG0880042490.01.T01:CDS
TTTGGCTTTGATACAAGCTC+AGG 0.448980 8:-9482287 MsG0880042490.01.T01:CDS
CTTGTGAATTATCCAGTGAT+TGG 0.451909 8:-9481303 MsG0880042490.01.T01:CDS
GATGCCAAATTCATACATAC+TGG 0.453219 8:-9482038 MsG0880042490.01.T01:CDS
CCTGTATTCTCTGTTTGTGA+TGG 0.470120 8:+9481464 None:intergenic
TTGAATTTGTAATGGGGCAC+TGG 0.471259 8:+9481183 None:intergenic
CTTGCATTAGCATTTATACA+AGG 0.486171 8:-9482363 MsG0880042490.01.T01:CDS
TCCCAATAAAATTGGAGGCT+CGG 0.497332 8:-9481039 MsG0880042490.01.T01:CDS
GCTTAATTGTCTCCAATCAC+TGG 0.499648 8:+9481291 None:intergenic
GTGCCCCATTACAAATTCAA+TGG 0.505920 8:-9481180 MsG0880042490.01.T01:CDS
GTATCAAAGCCAAAATAGTA+AGG 0.511658 8:+9482296 None:intergenic
AAGGAGGTTGAGAAGCTGGC+TGG 0.521290 8:-9481112 MsG0880042490.01.T01:CDS
AAATATTCTGGGTTGCGCAC+AGG 0.521427 8:-9482077 MsG0880042490.01.T01:CDS
ATGAAGATGTGAAATATTCT+GGG 0.529265 8:-9482088 MsG0880042490.01.T01:CDS
CTCACATGTTGTAGTTCCTG+TGG 0.541071 8:+9481981 None:intergenic
GGCCGTCCCAATAAAATTGG+AGG 0.555300 8:-9481044 MsG0880042490.01.T01:CDS
CCATCACAAACAGAGAATAC+AGG 0.556279 8:-9481464 MsG0880042490.01.T01:intron
TAGATCATTGATGTTAAATG+AGG 0.575318 8:+9481267 None:intergenic
TACATACTGGTGTAAATAGG+AGG 0.579065 8:-9482025 MsG0880042490.01.T01:CDS
CACATCAAATATCACAATCA+GGG 0.580022 8:-9481065 MsG0880042490.01.T01:CDS
ATTCACAAGGCGACCAGATG+CGG 0.581210 8:+9481317 None:intergenic
TAACAGTTTCTCACTCCACT+AGG 0.581440 8:+9481951 None:intergenic
CTTGTATAAATGCTAATGCA+AGG 0.585135 8:+9482364 None:intergenic
TCCTGTGGAATAATAGGTGG+CGG 0.586786 8:+9481996 None:intergenic
CTACTACTTGCACTTTAAGG+AGG 0.588034 8:-9481128 MsG0880042490.01.T01:CDS
ACCGCCACCTATTATTCCAC+AGG 0.595048 8:-9481997 MsG0880042490.01.T01:CDS
ACAACTATGTGACATAAAGC+AGG 0.616575 8:+9482199 None:intergenic
CAATCACTGGATAATTCACA+AGG 0.622545 8:+9481304 None:intergenic
TACAGAATAAATGTAACAAG+CGG 0.627498 8:-9481930 MsG0880042490.01.T01:intron
AGCAATACAGTAAGAAAATG+GGG 0.635324 8:+9482325 None:intergenic
ATTCCATTGAATTTGTAATG+GGG 0.639272 8:+9481177 None:intergenic
CACAGGAACTACAACATGTG+AGG 0.663632 8:-9481980 MsG0880042490.01.T01:CDS
CATGTGAGGAGCTTTCCTAG+TGG 0.664049 8:-9481966 MsG0880042490.01.T01:CDS
GTGCTCATAACAATTTCAGG+TGG 0.675321 8:+9481226 None:intergenic
AGTTCCTGTGGAATAATAGG+TGG 0.677200 8:+9481993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCTAAAACTGAAATGAA+TGG + Chr8:9481704-9481723 None:intergenic 20.0%
!!! TCAATTACTGACAATTTTAT+TGG - Chr8:9482025-9482044 MsG0880042490.01.T01:CDS 20.0%
! AAGCAATACAGTAAGAAAAT+GGG + Chr8:9481082-9481101 None:intergenic 25.0%
! ATGAAGATGTGAAATATTCT+GGG - Chr8:9481315-9481334 MsG0880042490.01.T01:CDS 25.0%
! ATTCCATTGAATTTGTAATG+GGG + Chr8:9482229-9482248 None:intergenic 25.0%
! CATTCCATTGAATTTGTAAT+GGG + Chr8:9482230-9482249 None:intergenic 25.0%
! TACAGAATAAATGTAACAAG+CGG - Chr8:9481473-9481492 MsG0880042490.01.T01:CDS 25.0%
! TAGAGTGATAATACTAAATC+AGG + Chr8:9481764-9481783 None:intergenic 25.0%
! TAGATCATTGATGTTAAATG+AGG + Chr8:9482139-9482158 None:intergenic 25.0%
!! ATCAATCAGATTTGTTTATG+AGG - Chr8:9481139-9481158 MsG0880042490.01.T01:CDS 25.0%
!!! TCATTTCAGTTTTAGAATTG+AGG - Chr8:9481705-9481724 MsG0880042490.01.T01:intron 25.0%
AAATGAAGATCAAATTGTGG+TGG + Chr8:9481557-9481576 None:intergenic 30.0%
AGCAATACAGTAAGAAAATG+GGG + Chr8:9481081-9481100 None:intergenic 30.0%
AGGATCTTCAAAAACAAATC+AGG - Chr8:9481159-9481178 MsG0880042490.01.T01:CDS 30.0%
ATCAGAGCTTCTTTCTATTA+TGG - Chr8:9481509-9481528 MsG0880042490.01.T01:intron 30.0%
ATCCTGGTACATATAAATTG+AGG + Chr8:9481271-9481290 None:intergenic 30.0%
CAAGCAATACAGTAAGAAAA+TGG + Chr8:9481083-9481102 None:intergenic 30.0%
CACATCAAATATCACAATCA+GGG - Chr8:9482338-9482357 MsG0880042490.01.T01:CDS 30.0%
CATGAAGATGTGAAATATTC+TGG - Chr8:9481314-9481333 MsG0880042490.01.T01:CDS 30.0%
CCAAAATGAAGATCAAATTG+TGG + Chr8:9481560-9481579 None:intergenic 30.0%
CTTGCATTAGCATTTATACA+AGG - Chr8:9481040-9481059 MsG0880042490.01.T01:CDS 30.0%
CTTGTATAAATGCTAATGCA+AGG + Chr8:9481042-9481061 None:intergenic 30.0%
GCATTCCATTGAATTTGTAA+TGG + Chr8:9482231-9482250 None:intergenic 30.0%
GTATCAAAGCCAAAATAGTA+AGG + Chr8:9481110-9481129 None:intergenic 30.0%
TACACCAGTATGTATGAATT+TGG + Chr8:9481372-9481391 None:intergenic 30.0%
TCACATCAAATATCACAATC+AGG - Chr8:9482337-9482356 MsG0880042490.01.T01:CDS 30.0%
TCATACATACTGGTGTAAAT+AGG - Chr8:9481375-9481394 MsG0880042490.01.T01:intron 30.0%
TTCCTCAATTTATATGTACC+AGG - Chr8:9481266-9481285 MsG0880042490.01.T01:CDS 30.0%
! CATTTTCTTACTGTATTGCT+TGG - Chr8:9481081-9481100 MsG0880042490.01.T01:CDS 30.0%
! CCACAATTTGATCTTCATTT+TGG - Chr8:9481557-9481576 MsG0880042490.01.T01:intron 30.0%
!!! TCATTTTGGAGCTAATGTTT+GGG - Chr8:9481571-9481590 MsG0880042490.01.T01:intron 30.0%
!!! TTCATTTTGGAGCTAATGTT+TGG - Chr8:9481570-9481589 MsG0880042490.01.T01:intron 30.0%
ACAACTATGTGACATAAAGC+AGG + Chr8:9481207-9481226 None:intergenic 35.0%
CAATCACTGGATAATTCACA+AGG + Chr8:9482102-9482121 None:intergenic 35.0%
CAATCTAAGCTAATGAATCC+TGG + Chr8:9481287-9481306 None:intergenic 35.0%
CTACTACTACTTGCACTTTA+AGG - Chr8:9482272-9482291 MsG0880042490.01.T01:CDS 35.0%
CTCTACAAGAGATGTGATTT+AGG - Chr8:9481914-9481933 MsG0880042490.01.T01:intron 35.0%
CTTGTGAATTATCCAGTGAT+TGG - Chr8:9482100-9482119 MsG0880042490.01.T01:CDS 35.0%
GATGCCAAATTCATACATAC+TGG - Chr8:9481365-9481384 MsG0880042490.01.T01:intron 35.0%
GATGTGATAATATACACTCC+AGG - Chr8:9481789-9481808 MsG0880042490.01.T01:intron 35.0%
GGTTATATGTGATCTTGTGA+TGG + Chr8:9481653-9481672 None:intergenic 35.0%
GTGAAGTTCACTAATGTATC+AGG - Chr8:9481599-9481618 MsG0880042490.01.T01:intron 35.0%
TACATACTGGTGTAAATAGG+AGG - Chr8:9481378-9481397 MsG0880042490.01.T01:intron 35.0%
TGTAGTTCCTGTGGAATAAT+AGG + Chr8:9481416-9481435 None:intergenic 35.0%
! GCTTGGTTTCCTTACTATTT+TGG - Chr8:9481098-9481117 MsG0880042490.01.T01:CDS 35.0%
! GGATTCATTAGCTTAGATTG+TGG - Chr8:9481287-9481306 MsG0880042490.01.T01:CDS 35.0%
! TTGTACCTGTTGTTTGTACA+TGG + Chr8:9482051-9482070 None:intergenic 35.0%
AGTTCCTGTGGAATAATAGG+TGG + Chr8:9481413-9481432 None:intergenic 40.0%
ATGATGTTTATGACCGCATC+TGG - Chr8:9482073-9482092 MsG0880042490.01.T01:CDS 40.0%
ATTGGCCATGTACAAACAAC+AGG - Chr8:9482043-9482062 MsG0880042490.01.T01:CDS 40.0%
CCATCACAAACAGAGAATAC+AGG - Chr8:9481939-9481958 MsG0880042490.01.T01:CDS 40.0%
CCTGTATTCTCTGTTTGTGA+TGG + Chr8:9481942-9481961 None:intergenic 40.0%
GCAGTGCTCATAACAATTTC+AGG + Chr8:9482183-9482202 None:intergenic 40.0%
GCTTAATTGTCTCCAATCAC+TGG + Chr8:9482115-9482134 None:intergenic 40.0%
GTGCCCCATTACAAATTCAA+TGG - Chr8:9482223-9482242 MsG0880042490.01.T01:CDS 40.0%
GTGCTCATAACAATTTCAGG+TGG + Chr8:9482180-9482199 None:intergenic 40.0%
TAACAGTTTCTCACTCCACT+AGG + Chr8:9481455-9481474 None:intergenic 40.0%
TAACCATGTCTCGTTAACAC+AGG - Chr8:9481668-9481687 MsG0880042490.01.T01:intron 40.0%
TCCCAATAAAATTGGAGGCT+CGG - Chr8:9482364-9482383 MsG0880042490.01.T01:CDS 40.0%
! AGCCTCCAATTTTATTGGGA+CGG + Chr8:9482364-9482383 None:intergenic 40.0%
! CTACTACTTGCACTTTAAGG+AGG - Chr8:9482275-9482294 MsG0880042490.01.T01:CDS 40.0%
! TTGAATTTGTAATGGGGCAC+TGG + Chr8:9482223-9482242 None:intergenic 40.0%
!! TTTGGCTTTGATACAAGCTC+AGG - Chr8:9481116-9481135 MsG0880042490.01.T01:CDS 40.0%
AAATATTCTGGGTTGCGCAC+AGG - Chr8:9481326-9481345 MsG0880042490.01.T01:CDS 45.0%
CACAGGAACTACAACATGTG+AGG - Chr8:9481423-9481442 MsG0880042490.01.T01:intron 45.0%
CTCACATGTTGTAGTTCCTG+TGG + Chr8:9481425-9481444 None:intergenic 45.0%
GTCTCGTTAACACAGGCAAA+GGG - Chr8:9481675-9481694 MsG0880042490.01.T01:intron 45.0%
TCCTGTGGAATAATAGGTGG+CGG + Chr8:9481410-9481429 None:intergenic 45.0%
TGTATCAGGCATCACACTCA+AGG - Chr8:9481613-9481632 MsG0880042490.01.T01:intron 45.0%
TGTCTCGTTAACACAGGCAA+AGG - Chr8:9481674-9481693 MsG0880042490.01.T01:intron 45.0%
TTGCCTGTGTTAACGAGACA+TGG + Chr8:9481674-9481693 None:intergenic 45.0%
! AGCCGAGCCTCCAATTTTAT+TGG + Chr8:9482369-9482388 None:intergenic 45.0%
! CTTTAAGGAGGTTGAGAAGC+TGG - Chr8:9482287-9482306 MsG0880042490.01.T01:CDS 45.0%
! GCCGAGCCTCCAATTTTATT+GGG + Chr8:9482368-9482387 None:intergenic 45.0%
ACCGCCACCTATTATTCCAC+AGG - Chr8:9481406-9481425 MsG0880042490.01.T01:intron 50.0%
ACTCCAGGTCTCGTTAACAC+AGG - Chr8:9481804-9481823 MsG0880042490.01.T01:intron 50.0%
ATTCACAAGGCGACCAGATG+CGG + Chr8:9482089-9482108 None:intergenic 50.0%
CAGGGCCGTCCCAATAAAAT+TGG - Chr8:9482356-9482375 MsG0880042490.01.T01:CDS 50.0%
CATGTGAGGAGCTTTCCTAG+TGG - Chr8:9481437-9481456 MsG0880042490.01.T01:intron 50.0%
GGCCGTCCCAATAAAATTGG+AGG - Chr8:9482359-9482378 MsG0880042490.01.T01:CDS 50.0%
GGTCTCGTTAACACAGGCAA+AGG - Chr8:9481810-9481829 MsG0880042490.01.T01:intron 50.0%
TTGCCTGTGTTAACGAGACC+TGG + Chr8:9481810-9481829 None:intergenic 50.0%
AAGGAGGTTGAGAAGCTGGC+TGG - Chr8:9482291-9482310 MsG0880042490.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 9481033 9482392 9481033 ID=MsG0880042490.01;Name=MsG0880042490.01
Chr8 mRNA 9481033 9482392 9481033 ID=MsG0880042490.01.T01;Parent=MsG0880042490.01;Name=MsG0880042490.01.T01;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|0.66|0.5|4|0|251
Chr8 exon 9482212 9482392 9482212 ID=MsG0880042490.01.T01:exon:63343;Parent=MsG0880042490.01.T01
Chr8 exon 9481931 9482122 9481931 ID=MsG0880042490.01.T01:exon:63342;Parent=MsG0880042490.01.T01
Chr8 exon 9481465 9481519 9481465 ID=MsG0880042490.01.T01:exon:63341;Parent=MsG0880042490.01.T01
Chr8 exon 9481033 9481360 9481033 ID=MsG0880042490.01.T01:exon:63340;Parent=MsG0880042490.01.T01
Chr8 CDS 9482212 9482392 9482212 ID=MsG0880042490.01.T01:cds;Parent=MsG0880042490.01.T01
Chr8 CDS 9481931 9482122 9481931 ID=MsG0880042490.01.T01:cds;Parent=MsG0880042490.01.T01
Chr8 CDS 9481465 9481519 9481465 ID=MsG0880042490.01.T01:cds;Parent=MsG0880042490.01.T01
Chr8 CDS 9481033 9481360 9481033 ID=MsG0880042490.01.T01:cds;Parent=MsG0880042490.01.T01
Gene Sequence

>MsG0880042490.01.T01

ATGCTTCCTTGCATTAGCATTTATACAAGGATGATGATAATGTTACCCCATTTTCTTACTGTATTGCTTGGTTTCCTTACTATTTTGGCTTTGATACAAGCTCAGGATCAATCAGATTTGTTTATGAGGATCTTCAAAAACAAATCAGGTTTGTTTATGAATTTATCTATACCTGCTTTATATTGTGGTCAACATGAAGATGTGAAATATTCTGGGTTGCGCACAGGCGTAAATTACATTTCAGATGCCAAATTCATACATACTGGTGTAAATAGGAGGATAGCACCGCCACCTATTATTCCACAGGAACTACAACATGTGAGGAGCTTTCCTAGTGGAGTGAGAAACTGTTACAGAATAAATGTAACAAGCGTATTATCACTCTACAAGAGATGTGATTTAGGTTCCATCACAAACAGAGAATACAGGTACAAAGATGATGTTTATGACCGCATCTGGTCGCCTTGTGAATTATCCAGTGATTGGAGACAATTAAGCACCTCATTTAACATCAATGATCTATTTCAGAATGAATATAGTCCACCTGAAATTGTTATGAGCACTGCTGTTGTAACAGTAAATGCCAGTGCCCCATTACAAATTCAATGGAATGCAGATAATGTAAATGAGCAATACTACTACTACTTGCACTTTAAGGAGGTTGAGAAGCTGGCTGGAAATGAAACTAGAGCATTTCATATCACATCAAATATCACAATCAGGGCCGTCCCAATAAAATTGGAGGCTCGGCTCTAA
Protein sequence

>MsG0880042490.01.T01

MLPCISIYTRMMIMLPHFLTVLLGFLTILALIQAQDQSDLFMRIFKNKSGLFMNLSIPALYCGQHEDVKYSGLRTGVNYISDAKFIHTGVNRRIAPPPIIPQELQHVRSFPSGVRNCYRINVTSVLSLYKRCDLGSITNREYRYKDDVYDRIWSPCELSSDWRQLSTSFNINDLFQNEYSPPEIVMSTAVVTVNASAPLQIQWNADNVNEQYYYYLHFKEVEKLAGNETRAFHITSNITIRAVPIKLEARL*