AlfalfaGEDB | MsG0880042902.01

M. sativa cultivar ZhongmuNo.1 / MsG0880042902.01

KEGG: -
GO: GO:0003677 GO:0006355
PFAM: PF02365

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042902.01.T01	QDX01726.1	99.767	429	1	0	1	429	1	429	0	904

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042902.01.T01	Q84WP6	52.727	440	119	11	1	428	2	364	2.46E-136	398

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042902.01.T01	A0A6B7JGE6	99.767	429	1	0	1	429	1	429	0.0	904

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsG0880042902.01.T01	TF	NAC

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280007878.01	MsG0880042902.01	0.826462	2.676978e-54	2.512215e-51
MsG0280008107.01	MsG0880042902.01	0.802852	4.607617e-49	2.281044e-46
MsG0280010125.01	MsG0880042902.01	0.821693	3.524453e-53	2.888066e-50
MsG0780039257.01	MsG0880042902.01	0.808628	2.820444e-50	1.620612e-47
MsG0880042902.01	MsG0880042925.01	0.943121	2.126601e-102	2.795826e-97

Showing 1 to 5 of 5 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0880042902.01	MsG0580025064.01	PPI

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042902.01.T01	MTR_8g024480	97.005	434	8	1	1	429	1	434	0.0	885
MsG0880042902.01.T01	MTR_2g062730	75.000	168	30	2	11	177	6	162	5.25e-91	279
MsG0880042902.01.T01	MTR_4g036030	47.093	344	139	9	9	341	1	312	7.33e-91	279
MsG0880042902.01.T01	MTR_4g101680	47.605	334	132	8	9	333	1	300	8.97e-90	276
MsG0880042902.01.T01	MTR_4g035590	73.494	166	32	1	15	180	8	161	1.16e-88	273
MsG0880042902.01.T01	MTR_5g012080	43.733	375	136	10	9	363	1	320	4.61e-85	264
MsG0880042902.01.T01	MTR_5g021710	50.980	255	93	3	12	259	5	234	8.66e-85	263
MsG0880042902.01.T01	MTR_8g076110	50.781	256	109	5	12	267	3	241	8.58e-81	252
MsG0880042902.01.T01	MTR_1g096430	42.262	336	138	9	9	330	1	294	5.58e-75	238
MsG0880042902.01.T01	MTR_3g435150	53.714	175	69	4	3	175	2	166	6.16e-58	192

Showing 1 to 10 of 98 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880042902.01.T01	AT2G46770	52.727	440	119	11	1	428	2	364	2.51e-137	398
MsG0880042902.01.T01	AT3G61910	47.031	421	128	10	5	418	1	333	4.80e-113	335
MsG0880042902.01.T01	AT1G32770	50.000	346	115	8	1	333	1	301	9.79e-104	312
MsG0880042902.01.T01	AT1G79580	73.295	176	34	3	6	180	8	171	3.37e-90	278
MsG0880042902.01.T01	AT1G79580	73.295	176	34	3	6	180	8	171	3.37e-90	278
MsG0880042902.01.T01	AT1G79580	73.295	176	34	3	6	180	8	171	3.37e-90	278
MsG0880042902.01.T01	AT1G79580	73.295	176	34	3	6	180	8	171	3.37e-90	278
MsG0880042902.01.T01	AT1G79580	73.295	176	34	3	6	180	8	171	3.37e-90	278
MsG0880042902.01.T01	AT4G10350	68.132	182	47	2	5	186	1	171	8.29e-88	271
MsG0880042902.01.T01	AT2G18060	44.675	338	133	9	15	337	9	307	1.12e-87	271

Showing 1 to 10 of 143 entries

Previous1 2 3 4 5…15Next

Find 124 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTAGACAGCCCTTC+TGG	0.397489	8:+15668511	MsG0880042902.01.T01:CDS
AAAGACAAGAAGTATCCAAC+CGG	0.551006	8:+15668080	MsG0880042902.01.T01:CDS
AAAGGTGAAAGATAATGAGG+TGG	0.692128	8:-15667504	None:intergenic
AAATACTTCAACAAATGGGA+AGG	0.591385	8:+15668590	MsG0880042902.01.T01:CDS
AACAATGAGAACAACAATGA+TGG	0.475096	8:+15668769	MsG0880042902.01.T01:CDS
AACATGAGCATATCTGTTAA+TGG	0.305797	8:+15667663	MsG0880042902.01.T01:CDS
AACTGAGGCTTCTAGGCAAT+TGG	0.397982	8:+15668978	MsG0880042902.01.T01:CDS
AAGAAGGATGGGTGGTGTGT+AGG	0.502710	8:+15668464	MsG0880042902.01.T01:CDS
AAGTTGATGATGATGATTTA+AGG	0.284391	8:-15669062	None:intergenic
AATACTTCAACAAATGGGAA+GGG	0.596086	8:+15668591	MsG0880042902.01.T01:CDS

Showing 1 to 10 of 124 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATACTTCAACAAATGGGA+AGG	+	Chr8:15668590-15668609	MsG0880042902.01.T01:CDS	30.0%
AACAATGAGAACAACAATGA+TGG	+	Chr8:15668769-15668788	MsG0880042902.01.T01:CDS	30.0%
AACATGAGCATATCTGTTAA+TGG	+	Chr8:15667663-15667682	MsG0880042902.01.T01:CDS	30.0%
AATACTTCAACAAATGGGAA+GGG	+	Chr8:15668591-15668610	MsG0880042902.01.T01:CDS	30.0%
ACAATGAGAACAACAATGAT+GGG	+	Chr8:15668770-15668789	MsG0880042902.01.T01:CDS	30.0%
ATAATTATGGAAGGTTTGCA+AGG	+	Chr8:15668650-15668669	MsG0880042902.01.T01:CDS	30.0%
ATATATAACTTTGTCACGAC+CGG	-	Chr8:15668150-15668169	None:intergenic	30.0%
ATCTATTTCACAATCGAACA+AGG	-	Chr8:15669317-15669336	None:intergenic	30.0%
CATGGTTAATAATCCATTAG+AGG	+	Chr8:15668861-15668880	MsG0880042902.01.T01:CDS	30.0%
GAGCAAATACTTCAACAAAT+GGG	+	Chr8:15668586-15668605	MsG0880042902.01.T01:CDS	30.0%

Showing 1 to 10 of 146 entries

Previous1 2 3 4 5…15Next

Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	15667497	15669561	15667497	ID=MsG0880042902.01;Name=MsG0880042902.01
Chr8	mRNA	15667497	15669561	15667497	ID=MsG0880042902.01.T01;Parent=MsG0880042902.01;Name=MsG0880042902.01.T01;_AED=0.47;_eAED=0.47;_QI=157\|1\|1\|1\|1\|1\|3\|298\|429
Chr8	exon	15667497	15667837	15667497	ID=MsG0880042902.01.T01:exon:1004;Parent=MsG0880042902.01.T01
Chr8	exon	15668027	15668301	15668027	ID=MsG0880042902.01.T01:exon:1005;Parent=MsG0880042902.01.T01
Chr8	exon	15668433	15669561	15668433	ID=MsG0880042902.01.T01:exon:1006;Parent=MsG0880042902.01.T01
Chr8	five_prime_UTR	15667497	15667653	15667497	ID=MsG0880042902.01.T01:five_prime_utr;Parent=MsG0880042902.01.T01
Chr8	CDS	15667654	15667837	15667654	ID=MsG0880042902.01.T01:cds;Parent=MsG0880042902.01.T01
Chr8	CDS	15668027	15668301	15668027	ID=MsG0880042902.01.T01:cds;Parent=MsG0880042902.01.T01
Chr8	CDS	15668433	15669263	15668433	ID=MsG0880042902.01.T01:cds;Parent=MsG0880042902.01.T01
Chr8	three_prime_UTR	15669264	15669561	15669264	ID=MsG0880042902.01.T01:three_prime_utr;Parent=MsG0880042902.01.T01

Gene Sequence

>MsG0880042902.01.T01

ATGCCTGATAACATGAGCATATCTGTTAATGGACAATCTCAAGTTCCTCCTGGATTCCGGTTTCATCCAACTGAAGAAGAGCTTCTTCAATACTACTTGAGGAAAAAAGTCTCTTACGAGAAGATTGACCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATTCAAGAGAAATGCAAAATAGGAACAACTCCACAAAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCAACCGGAACACGAACCAATCGCGCTACAGCCGCAGGGTTCTGGAAAGCCACCGGTCGTGACAAAGTTATATATAGCAATGGAAAAAGGATTGGAATGAGAAAGACTCTTGTTTTCTACAAAGGTCGTGCTCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGACTCGACGATAACACCACCAATGACACCAATCTGGTGTCGAATATGATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGACAGCCCTTCTGGAGAGGGAAGAAGAAGCCATCACTTGTATGATACTTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGGGGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAATAATTATGGAAGGTTTGCAAGGCCTTTTGAATCTACTCTCAACAACAATGGTGGTTATAATAATGAAAGGTTCATGAAACTTCCAAACTTAGAGAGTCCAAAATCAACAAGCATGGAGAACAATGAGAACAACAATGATGGGTACCATGCAATTATTCAAGTAGATATGGCTAATGAAAATGAAGGGTCATTCTCTGATCATCATCATAACATGGTTAATAATCCATTAGAGGCATCATCATCATCAATGGTGATAGCATGTGGTGATGGTGGTCTTACTAATTGGGTAGCTTTGGATAGGCTTGTTGCTTCTCAATTGAATGGACAAACTGAGGCTTCTAGGCAATTGGCTTGCTTTAATGACCCCACAATGGGATATTGCACTAATGATCAAGATCTTCAACTTCCCAGCCTTAAATCATCATCATCAACTTCATCACTATCAACACAAGTCAGAGCTACTACTACTTCTACTACTACTACAGCTACTACTTACATTAGTCCCTCACATGACTATGCCAGTGAGATTGACCTCTGGAACTTTGCTCGATCAACTTCCTCGTTGTTGTCATCTTCTGAACCACTGTGTCACGTGTCGAATACGTCAGTGTGA

Protein sequence

>MsG0880042902.01.T01

MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTNDTNLVSNMIGDGGQEEGWVVCRIFKKKNHLKTLDSPSGEGRRSHHLYDTCDEGALEQILQQMGRGCKEENYEANYNNNYGRFARPFESTLNNNGGYNNERFMKLPNLESPKSTSMENNENNNDGYHAIIQVDMANENEGSFSDHHHNMVNNPLEASSSSMVIACGDGGLTNWVALDRLVASQLNGQTEASRQLACFNDPTMGYCTNDQDLQLPSLKSSSSTSSLSTQVRATTTSTTTTATTYISPSHDYASEIDLWNFARSTSSLLSSSEPLCHVSNTSV*