AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039257.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039257.01.T01 MTR_7g068920 85.258 407 7 1 7 360 1 407 0.0 651
MsG0780039257.01.T01 MTR_4g016940 66.828 413 84 1 1 360 1 413 0.0 553
MsG0780039257.01.T01 MTR_8g463790 38.734 395 177 6 16 360 16 395 2.08e-95 292
MsG0780039257.01.T01 MTR_5g083260 36.165 412 198 7 3 360 10 410 3.85e-95 291
MsG0780039257.01.T01 MTR_3g070900 40.361 332 143 3 84 360 104 435 1.01e-86 271
MsG0780039257.01.T01 MTR_3g071650 33.577 411 219 2 3 360 7 416 1.22e-83 262
MsG0780039257.01.T01 MTR_5g082880 38.209 335 149 4 84 360 163 497 1.70e-80 256
MsG0780039257.01.T01 MTR_4g014430 38.602 329 150 4 83 360 105 432 6.17e-78 248
MsG0780039257.01.T01 MTR_7g070060 37.278 338 153 5 81 360 59 395 6.55e-75 239
MsG0780039257.01.T01 MTR_4g014440 38.323 334 147 5 85 360 61 393 7.13e-75 239
MsG0780039257.01.T01 MTR_1g112210 34.969 326 149 8 84 360 57 368 5.10e-61 202
MsG0780039257.01.T01 MTR_1g112210 34.969 326 136 9 84 360 57 355 1.36e-59 198
MsG0780039257.01.T01 MTR_1g050448 34.161 322 158 10 83 360 50 361 3.25e-56 189
MsG0780039257.01.T01 MTR_7g070060 44.388 196 103 2 81 274 59 250 1.21e-54 183
MsG0780039257.01.T01 MTR_3g464570 32.628 331 156 8 86 360 43 362 1.71e-54 185
MsG0780039257.01.T01 MTR_7g070060 36.786 280 118 5 139 360 15 293 7.89e-53 178
MsG0780039257.01.T01 MTR_7g093450 31.737 334 163 8 85 360 247 573 1.25e-49 177
MsG0780039257.01.T01 MTR_5g033800 32.081 346 160 12 76 360 138 469 2.25e-49 174
MsG0780039257.01.T01 MTR_7g109550 30.514 331 160 10 86 360 137 453 3.40e-49 173
MsG0780039257.01.T01 MTR_3g049330 29.003 331 162 7 81 359 26 335 1.73e-48 168
MsG0780039257.01.T01 MTR_0136s0010 31.437 334 164 9 85 360 169 495 1.19e-47 170
MsG0780039257.01.T01 MTR_4g126950 29.341 334 171 7 84 360 107 432 5.20e-46 164
MsG0780039257.01.T01 MTR_4g079700 30.275 327 152 8 86 360 47 349 1.05e-45 161
MsG0780039257.01.T01 MTR_8g069790 30.267 337 165 10 84 360 176 502 4.79e-45 163
MsG0780039257.01.T01 MTR_1g111010 31.776 321 152 10 83 359 29 326 9.84e-45 158
MsG0780039257.01.T01 MTR_2g091175 29.394 330 157 8 83 360 47 352 1.35e-44 158
MsG0780039257.01.T01 MTR_2g073510 29.394 330 159 8 83 359 30 338 1.38e-43 155
MsG0780039257.01.T01 MTR_3g021060 30.330 333 151 12 82 359 42 348 3.01e-43 155
MsG0780039257.01.T01 MTR_4g088030 29.697 330 157 9 83 360 30 336 5.93e-43 154
MsG0780039257.01.T01 MTR_1g058380 28.747 407 181 15 25 360 12 380 3.01e-42 153
MsG0780039257.01.T01 MTR_3g035830 30.395 329 156 13 82 359 27 333 9.44e-42 150
MsG0780039257.01.T01 MTR_5g071350 30.029 343 165 11 82 360 54 385 1.53e-41 151
MsG0780039257.01.T01 MTR_3g021090 29.641 334 152 11 82 359 27 333 3.33e-41 150
MsG0780039257.01.T01 MTR_3g090120 27.488 422 216 14 6 360 47 445 6.99e-41 150
MsG0780039257.01.T01 MTR_2g073500 29.394 330 153 10 84 359 27 330 3.73e-40 146
MsG0780039257.01.T01 MTR_5g034810 30.887 327 151 11 86 360 35 338 4.34e-40 146
MsG0780039257.01.T01 MTR_7g094750 27.893 337 178 9 83 360 88 418 1.68e-39 147
MsG0780039257.01.T01 MTR_4g121560 26.437 348 188 8 71 360 102 439 5.39e-38 143
MsG0780039257.01.T01 MTR_5g033800 38.220 191 99 6 76 256 138 319 3.22e-37 139
MsG0780039257.01.T01 MTR_3g464570 30.827 266 118 7 151 360 3 258 6.38e-36 133
MsG0780039257.01.T01 MTR_8g093530 26.061 330 176 8 84 360 88 402 7.34e-36 136
MsG0780039257.01.T01 MTR_2g015720 36.458 192 109 5 83 274 39 217 8.43e-36 134
MsG0780039257.01.T01 MTR_5g059400 32.051 234 134 6 32 256 133 350 4.18e-35 135
MsG0780039257.01.T01 MTR_1g116130 32.051 234 134 6 32 256 133 350 4.18e-35 135
MsG0780039257.01.T01 MTR_4g087730 35.602 191 111 4 84 274 43 221 5.40e-35 132
MsG0780039257.01.T01 MTR_2g022560 35.417 192 116 2 79 263 90 280 9.78e-35 134
MsG0780039257.01.T01 MTR_7g094750 32.597 181 114 2 83 256 88 267 2.74e-34 130
MsG0780039257.01.T01 MTR_5g035080 31.915 188 115 5 75 258 64 242 7.97e-28 114
MsG0780039257.01.T01 MTR_5g035150 25.967 362 171 12 81 364 79 421 1.89e-27 113
MsG0780039257.01.T01 MTR_5g035090 32.000 175 113 4 85 257 82 252 2.48e-25 107
MsG0780039257.01.T01 MTR_7g019120 31.967 244 141 10 7 242 6 232 9.75e-25 105
MsG0780039257.01.T01 MTR_8g099300 26.337 243 169 3 20 260 15 249 2.22e-24 104
MsG0780039257.01.T01 MTR_8g027900 30.864 162 107 3 83 243 208 365 7.08e-24 103
MsG0780039257.01.T01 MTR_8g104970 38.298 141 74 4 84 219 118 250 9.33e-24 103
MsG0780039257.01.T01 MTR_7g033230 32.597 181 100 6 86 257 334 501 9.45e-24 103
MsG0780039257.01.T01 MTR_7g033230 32.597 181 100 6 86 257 264 431 1.05e-23 103
MsG0780039257.01.T01 MTR_6g061710 31.694 183 109 6 40 218 125 295 1.16e-23 103
MsG0780039257.01.T01 MTR_3g109840 33.520 179 99 6 86 257 73 238 1.60e-23 102
MsG0780039257.01.T01 MTR_6g016880 33.168 202 118 5 20 218 22 209 1.63e-23 102
MsG0780039257.01.T01 MTR_7g019140 34.320 169 104 5 7 175 6 167 1.97e-22 93.6
MsG0780039257.01.T01 MTR_1g076690 39.623 106 60 3 86 188 223 327 1.98e-21 96.7
MsG0780039257.01.T01 MTR_5g035120 44.565 92 50 1 84 175 73 163 2.49e-21 90.5
MsG0780039257.01.T01 MTR_5g035070 31.285 179 118 4 81 257 82 257 4.57e-21 94.7
MsG0780039257.01.T01 MTR_2g016060 36.029 136 79 2 87 216 56 189 1.37e-20 93.2
MsG0780039257.01.T01 MTR_6g007777 28.191 188 129 4 82 267 112 295 7.60e-19 88.6
MsG0780039257.01.T01 MTR_6g016875 36.029 136 83 2 83 215 61 195 1.38e-17 84.3
MsG0780039257.01.T01 MTR_5g069320 25.540 278 112 9 133 360 147 379 2.07e-17 83.6
MsG0780039257.01.T01 MTR_4g092830 29.189 185 109 7 86 256 48 224 3.29e-16 80.5
MsG0780039257.01.T01 MTR_2g022580 35.484 124 73 1 148 264 3 126 3.45e-16 75.1
MsG0780039257.01.T01 MTR_4g125060 25.074 339 177 14 86 360 132 457 7.78e-16 79.3
MsG0780039257.01.T01 MTR_4g125060 24.620 329 191 13 86 360 200 525 6.86e-15 76.6
MsG0780039257.01.T01 MTR_4g125060 24.620 329 191 13 86 360 171 496 8.83e-15 76.3
MsG0780039257.01.T01 MTR_8g093870 24.747 198 119 6 83 259 130 318 1.80e-13 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039257.01.T01 AT5G01360 53.563 407 130 3 13 360 14 420 3.85e-149 429
MsG0780039257.01.T01 AT5G01360 57.647 340 90 2 75 360 25 364 9.86e-142 409
MsG0780039257.01.T01 AT1G73140 40.597 335 146 3 76 360 60 391 7.76e-92 283
MsG0780039257.01.T01 AT2G40150 40.533 338 140 3 84 360 69 406 1.26e-87 272
MsG0780039257.01.T01 AT3G55990 39.655 348 155 3 68 360 122 469 2.44e-87 273
MsG0780039257.01.T01 AT2G40320 32.997 397 203 3 17 360 22 408 2.54e-83 261
MsG0780039257.01.T01 AT3G11030 36.254 331 157 2 84 360 104 434 1.66e-80 254
MsG0780039257.01.T01 AT5G01620 34.896 384 180 9 36 360 63 435 7.71e-77 245
MsG0780039257.01.T01 AT5G01620 34.896 384 180 9 36 360 63 435 7.71e-77 245
MsG0780039257.01.T01 AT5G01620 37.160 331 155 5 82 360 114 443 5.40e-76 243
MsG0780039257.01.T01 AT2G38320 35.465 344 163 5 75 360 48 390 8.29e-71 228
MsG0780039257.01.T01 AT2G40160 35.608 337 155 6 84 360 75 409 2.84e-70 227
MsG0780039257.01.T01 AT2G40160 35.608 337 155 6 84 360 75 409 3.31e-70 228
MsG0780039257.01.T01 AT2G38320 35.738 305 137 5 114 360 4 307 1.72e-60 199
MsG0780039257.01.T01 AT2G40160 44.949 198 108 1 84 280 75 272 1.88e-59 196
MsG0780039257.01.T01 AT1G78710 34.767 279 159 7 82 360 27 282 1.50e-56 188
MsG0780039257.01.T01 AT3G54260 34.268 321 154 10 86 360 51 360 2.26e-55 187
MsG0780039257.01.T01 AT5G58600 32.448 339 161 10 79 360 59 386 7.51e-54 184
MsG0780039257.01.T01 AT3G62390 32.326 331 161 10 84 360 136 457 7.10e-53 183
MsG0780039257.01.T01 AT5G06700 31.522 368 178 12 52 360 228 580 3.91e-51 181
MsG0780039257.01.T01 AT3G12060 30.518 367 176 10 52 360 176 521 6.16e-51 179
MsG0780039257.01.T01 AT2G30900 33.131 329 144 9 86 359 43 350 9.21e-51 175
MsG0780039257.01.T01 AT5G20590 30.723 332 166 7 86 360 141 465 1.49e-49 174
MsG0780039257.01.T01 AT2G34070 28.485 330 162 8 83 360 62 369 1.45e-47 167
MsG0780039257.01.T01 AT2G31110 29.179 329 156 10 85 360 44 348 8.08e-47 164
MsG0780039257.01.T01 AT5G49340 31.454 337 160 12 86 360 100 427 2.81e-45 162
MsG0780039257.01.T01 AT2G42570 28.869 336 162 10 78 360 39 350 5.04e-44 157
MsG0780039257.01.T01 AT1G48880 28.615 325 170 8 85 360 114 425 1.06e-43 158
MsG0780039257.01.T01 AT1G60790 27.809 356 179 11 71 360 175 518 9.66e-43 157
MsG0780039257.01.T01 AT2G30900 42.135 178 93 5 86 261 43 212 3.13e-41 147
MsG0780039257.01.T01 AT2G31110 34.737 190 112 4 85 274 44 221 4.16e-41 146
MsG0780039257.01.T01 AT3G62390 32.411 253 158 5 84 327 136 384 5.13e-41 150
MsG0780039257.01.T01 AT3G14850 29.358 327 163 9 83 359 31 339 1.06e-40 148
MsG0780039257.01.T01 AT5G58600 40.223 179 99 4 79 256 59 230 2.33e-40 145
MsG0780039257.01.T01 AT5G19160 34.363 259 141 5 86 326 99 346 1.53e-38 142
MsG0780039257.01.T01 AT5G20590 37.017 181 106 2 86 259 141 320 4.21e-38 141
MsG0780039257.01.T01 AT1G29050 34.896 192 114 4 83 274 58 238 4.85e-38 141
MsG0780039257.01.T01 AT1G78710 36.066 183 109 3 82 264 34 208 4.06e-37 138
MsG0780039257.01.T01 AT3G06080 28.487 337 171 9 86 360 103 431 4.11e-37 140
MsG0780039257.01.T01 AT5G06230 29.651 344 165 12 83 360 18 350 4.74e-37 138
MsG0780039257.01.T01 AT5G06230 29.651 344 165 12 83 360 59 391 9.62e-37 138
MsG0780039257.01.T01 AT5G19160 32.246 276 158 7 86 344 99 362 1.29e-36 139
MsG0780039257.01.T01 AT3G06080 36.898 187 108 4 86 264 103 287 7.52e-35 132
MsG0780039257.01.T01 AT3G11570 28.438 320 155 12 103 360 98 405 3.88e-32 126
MsG0780039257.01.T01 AT2G30010 36.735 196 106 7 79 267 49 233 1.38e-31 124
MsG0780039257.01.T01 AT2G30010 36.735 196 106 7 79 267 92 276 1.70e-31 124
MsG0780039257.01.T01 AT5G06230 32.979 188 110 3 83 256 59 244 1.13e-29 117
MsG0780039257.01.T01 AT1G70230 25.439 342 181 9 82 364 75 401 5.38e-27 111
MsG0780039257.01.T01 AT1G01430 36.296 135 85 1 83 217 96 229 9.55e-25 105
MsG0780039257.01.T01 AT5G15890 30.047 213 136 5 50 256 149 354 1.81e-24 105
MsG0780039257.01.T01 AT4G01080 24.107 336 198 12 83 364 88 420 4.25e-24 103
MsG0780039257.01.T01 AT5G51640 30.435 207 123 7 59 260 119 309 7.63e-23 100
MsG0780039257.01.T01 AT4G23790 24.138 348 190 13 80 360 73 413 7.97e-23 100
MsG0780039257.01.T01 AT2G34070 24.609 256 120 7 157 360 1 235 2.67e-22 95.5
MsG0780039257.01.T01 AT5G15900 37.313 134 81 2 84 215 65 197 3.82e-22 97.8
MsG0780039257.01.T01 AT5G15900 37.313 134 81 2 84 215 84 216 4.28e-22 98.2
MsG0780039257.01.T01 AT3G02440 35.385 130 82 2 86 215 135 262 5.13e-21 95.1
MsG0780039257.01.T01 AT3G02440 35.385 130 82 2 86 215 127 254 5.42e-21 95.1
MsG0780039257.01.T01 AT2G37720 25.223 337 179 15 86 360 143 468 7.88e-21 94.7
MsG0780039257.01.T01 AT4G25360 30.000 180 115 4 85 260 174 346 9.43e-21 94.7
MsG0780039257.01.T01 AT4G25360 30.000 180 115 4 85 260 174 346 9.43e-21 94.7
MsG0780039257.01.T01 AT4G11090 30.435 138 94 2 80 216 73 209 5.91e-20 91.7
MsG0780039257.01.T01 AT5G64020 25.071 351 174 16 86 360 57 394 6.28e-20 91.3
MsG0780039257.01.T01 AT3G28150 25.743 202 113 6 17 214 29 197 7.56e-19 88.2
MsG0780039257.01.T01 AT2G14530 25.292 257 172 7 83 328 59 306 8.83e-19 87.8
MsG0780039257.01.T01 AT5G20680 21.409 369 212 14 55 360 184 537 4.00e-17 83.6
MsG0780039257.01.T01 AT5G20680 21.409 369 212 14 55 360 184 537 4.00e-17 83.6
MsG0780039257.01.T01 AT5G20680 21.409 369 212 14 55 360 184 537 4.00e-17 83.6
MsG0780039257.01.T01 AT5G20680 21.409 369 212 14 55 360 184 537 4.00e-17 83.6
MsG0780039257.01.T01 AT5G20680 21.409 369 212 14 55 360 166 519 4.38e-17 83.6
MsG0780039257.01.T01 AT5G20680 21.409 369 212 14 55 360 90 443 5.84e-17 82.8
MsG0780039257.01.T01 AT5G64470 31.319 182 110 8 86 256 55 232 6.60e-17 81.3
MsG0780039257.01.T01 AT5G64470 31.319 182 110 8 86 256 55 232 7.14e-17 81.3
MsG0780039257.01.T01 AT5G64470 31.319 182 110 8 86 256 55 232 1.29e-16 81.3
MsG0780039257.01.T01 AT5G64470 31.319 182 110 8 86 256 55 232 1.32e-16 81.3
MsG0780039257.01.T01 AT3G14850 24.314 255 122 8 157 359 1 236 5.11e-16 77.8

Find 64 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATTGTCTTTCTATATA+TGG 0.208909 7:-60847067 None:intergenic
GCAACATTGCCAATGGAAAA+TGG 0.220734 7:+60846999 MsG0780039257.01.T01:CDS
CTTGGCAAGGTGCAATCTTC+TGG 0.242629 7:-60847142 None:intergenic
ACAAGGTTTGAACTTGAAAA+TGG 0.243164 7:-60846543 None:intergenic
TCTTCAGTGTATACTGAAAA+TGG 0.259741 7:+60849058 MsG0780039257.01.T01:CDS
TTTAGTCTGGTGTTCTTTCT+AGG 0.269729 7:-60846566 None:intergenic
ACAAGTTATGTCAGTGTAGA+TGG 0.304836 7:-60847044 None:intergenic
ATTTCAGAATATAGAATTGA+TGG 0.347402 7:+60849031 MsG0780039257.01.T01:CDS
AACACTGACATACATTTCAT+TGG 0.355620 7:+60847658 MsG0780039257.01.T01:CDS
CCTTTCCTCATGATCCCTTC+AGG 0.359239 7:+60846404 None:intergenic
CATTTACCAGAAGTCAAGAT+TGG 0.370501 7:+60848855 MsG0780039257.01.T01:intron
TGTAGATGGGCTTTATTGAT+TGG 0.392973 7:-60847030 None:intergenic
GGGAAAAGACTACTATTTGT+AGG 0.402810 7:+60847320 MsG0780039257.01.T01:CDS
ATGCTAGTATAGAATTCTAC+TGG 0.404319 7:+60847614 MsG0780039257.01.T01:CDS
CAAATAGAGATGATAATGAT+AGG 0.414378 7:-60846461 None:intergenic
ATTTACCAGAAGTCAAGATT+GGG 0.419364 7:+60848856 MsG0780039257.01.T01:intron
CAACATTGCCAATGGAAAAT+GGG 0.423964 7:+60847000 MsG0780039257.01.T01:CDS
TATGGTGGATGAGTGGTTCT+AGG 0.424096 7:+60847773 MsG0780039257.01.T01:CDS
GTCAATGAAGTGGTGGTAAT+AGG 0.428419 7:+60851596 MsG0780039257.01.T01:CDS
TTCACTTCAAAGAAATCAAT+GGG 0.450238 7:+60847346 MsG0780039257.01.T01:CDS
TGCATACATTGGTGTTTGCC+TGG 0.450244 7:+60849130 MsG0780039257.01.T01:CDS
CTGGTGTTCTTTCTAGGACA+AGG 0.456429 7:-60846560 None:intergenic
ATTCACTTCAAAGAAATCAA+TGG 0.464902 7:+60847345 MsG0780039257.01.T01:CDS
AGATTCTGATTATCAACATT+GGG 0.465574 7:+60847111 MsG0780039257.01.T01:CDS
GAAGCATTGGGGAACTGGTT+CGG 0.469422 7:+60848931 MsG0780039257.01.T01:CDS
AAAGAAAAGGATAATAAAAG+TGG 0.472940 7:+60847687 MsG0780039257.01.T01:CDS
ATTCTACTGGGCCCCATACC+TGG 0.476362 7:+60847627 MsG0780039257.01.T01:CDS
GTGTTAGACTCAACCAGGTA+TGG 0.478801 7:-60847640 None:intergenic
GGAAAAGACTACTATTTGTA+GGG 0.479501 7:+60847321 MsG0780039257.01.T01:CDS
GAGATGATAATGATAGGAAA+AGG 0.487294 7:-60846455 None:intergenic
AATCAGAAATCTATGAAAAG+AGG 0.494302 7:+60847407 MsG0780039257.01.T01:CDS
TGTTAGACTCAACCAGGTAT+GGG 0.502247 7:-60847639 None:intergenic
ATCAGAAATCTATGAAAAGA+GGG 0.504271 7:+60847408 MsG0780039257.01.T01:CDS
CAGATTCTGATTATCAACAT+TGG 0.508716 7:+60847110 MsG0780039257.01.T01:CDS
CTCTTACTTTGTCAATGAAG+TGG 0.510426 7:+60851586 MsG0780039257.01.T01:CDS
CTGATTATCAACATTGGGAG+TGG 0.529866 7:+60847116 MsG0780039257.01.T01:CDS
ATGCAACATGGATTGATGAC+AGG 0.540613 7:+60846954 MsG0780039257.01.T01:CDS
ATCTTATGCAGTTGAAGTTG+AGG 0.548097 7:+60851523 MsG0780039257.01.T01:intron
CAAGTTATGTCAGTGTAGAT+GGG 0.554652 7:-60847043 None:intergenic
AGGTGATAAGAAAGTTGATG+AGG 0.554872 7:+60846922 MsG0780039257.01.T01:intron
GTTACATTGATGAATGTCAC+TGG 0.556231 7:-60849004 None:intergenic
TCATTGGAGATACAAAGAAA+AGG 0.557285 7:+60847674 MsG0780039257.01.T01:CDS
TCATTCAGTCTTCAAAGTCA+AGG 0.570752 7:+60847436 MsG0780039257.01.T01:CDS
AATTGTTAAGTGAAGAAGAG+AGG 0.575802 7:+60849086 MsG0780039257.01.T01:CDS
GAAGAATGCAACATTGCCAA+TGG 0.580954 7:+60846992 MsG0780039257.01.T01:CDS
TTACTTTGTCAATGAAGTGG+TGG 0.588983 7:+60851589 MsG0780039257.01.T01:CDS
GGAATAATGAAAATCCATAG+AGG 0.592887 7:+60846425 MsG0780039257.01.T01:CDS
TTTACCAGAAGTCAAGATTG+GGG 0.598053 7:+60848857 MsG0780039257.01.T01:intron
CAGAAGATTGCACCTTGCCA+AGG 0.600519 7:+60847143 MsG0780039257.01.T01:CDS
GAAAAGACTACTATTTGTAG+GGG 0.609179 7:+60847322 MsG0780039257.01.T01:CDS
CAGTGTATACTGAAAATGGA+GGG 0.619439 7:+60849062 MsG0780039257.01.T01:CDS
GTGGTAATAGGTCTTGCCAC+AGG 0.632341 7:+60851608 MsG0780039257.01.T01:CDS
AAAATGCAGATTGCATACAT+TGG 0.635099 7:+60849119 MsG0780039257.01.T01:CDS
GTTAGACTCAACCAGGTATG+GGG 0.635629 7:-60847638 None:intergenic
ACCACTCATCCACCATACAT+AGG 0.637859 7:-60847767 None:intergenic
TGTCAGTGTTAGACTCAACC+AGG 0.641142 7:-60847645 None:intergenic
TGCTAGTATAGAATTCTACT+GGG 0.645271 7:+60847615 MsG0780039257.01.T01:CDS
GTGTGGAACTTACCTTGGCA+AGG 0.655568 7:-60847155 None:intergenic
AGGAGATTGTAAATGCAACA+TGG 0.660136 7:+60846942 MsG0780039257.01.T01:CDS
ACCTATGTATGGTGGATGAG+TGG 0.661766 7:+60847766 MsG0780039257.01.T01:CDS
GGATAAACGTATAATGAGTG+TGG 0.666583 7:+60848952 MsG0780039257.01.T01:CDS
TCAGTGTATACTGAAAATGG+AGG 0.667022 7:+60849061 MsG0780039257.01.T01:CDS
TCAATGAGACAAAGCCAGTG+AGG 0.681040 7:+60848903 MsG0780039257.01.T01:CDS
TCAGAAATCTATGAAAAGAG+GGG 0.685360 7:+60847409 MsG0780039257.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTACAAAATAAAC+TGG - Chr7:60849934-60849953 None:intergenic 10.0%
!! AAAAAATTACAAAATAAACT+GGG - Chr7:60849933-60849952 None:intergenic 10.0%
!! ACAATAATTAAAAAAAAACT+AGG - Chr7:60851366-60851385 None:intergenic 10.0%
!! ATATCATTATGTTAATATAT+TGG + Chr7:60850468-60850487 MsG0780039257.01.T01:intron 10.0%
!! CAATAATTAAAAAAAAACTA+GGG - Chr7:60851365-60851384 None:intergenic 10.0%
!! TAAATTAAGTGTATATTATA+AGG - Chr7:60848329-60848348 None:intergenic 10.0%
!! AAAAATTACAAAATAAACTG+GGG - Chr7:60849932-60849951 None:intergenic 15.0%
!! ATCATTGCATAAAAAATTTA+GGG - Chr7:60846874-60846893 None:intergenic 15.0%
!! CAATAAAAGTTATTACTTTA+AGG + Chr7:60847527-60847546 MsG0780039257.01.T01:intron 15.0%
!! CCTAACATTAAATATATAAT+AGG + Chr7:60849803-60849822 MsG0780039257.01.T01:intron 15.0%
!! CCTATTATATATTTAATGTT+AGG - Chr7:60849806-60849825 None:intergenic 15.0%
!! TTAATGATTTAATTCGAATA+GGG - Chr7:60847825-60847844 None:intergenic 15.0%
!! TTTAATGATTTAATTCGAAT+AGG - Chr7:60847826-60847845 None:intergenic 15.0%
!!! AAAGCTTTTGATTTTTTTTA+AGG + Chr7:60849750-60849769 MsG0780039257.01.T01:intron 15.0%
!!! AAGCTTTTGATTTTTTTTAA+GGG + Chr7:60849751-60849770 MsG0780039257.01.T01:intron 15.0%
!!! ATAATGTCAAAAAGTAATTT+TGG - Chr7:60847203-60847222 None:intergenic 15.0%
!!! CAATTTTCTTGTATAAAAAA+TGG + Chr7:60847082-60847101 MsG0780039257.01.T01:CDS 15.0%
!!! TATATTGTACTAAGTTTTTT+GGG - Chr7:60851409-60851428 None:intergenic 15.0%
!!! TTATATTGTACTAAGTTTTT+TGG - Chr7:60851410-60851429 None:intergenic 15.0%
!!! TTTTGTAAGATTTTAGTTAA+AGG + Chr7:60849559-60849578 MsG0780039257.01.T01:intron 15.0%
!! AAAGAAAAGGATAATAAAAG+TGG + Chr7:60847687-60847706 MsG0780039257.01.T01:CDS 20.0%
!! ACTTAGTACAATATAATTAG+AGG + Chr7:60851414-60851433 MsG0780039257.01.T01:intron 20.0%
!! AGAAAATAACATAATTCAGT+CGG - Chr7:60848694-60848713 None:intergenic 20.0%
!! AGATTTACATGAAAAAGATT+TGG + Chr7:60849619-60849638 MsG0780039257.01.T01:intron 20.0%
!! ATAGTACTAATATAGATACT+TGG + Chr7:60847568-60847587 MsG0780039257.01.T01:intron 20.0%
!! ATATGAACCTATATACAAAA+GGG + Chr7:60849714-60849733 MsG0780039257.01.T01:intron 20.0%
!! ATATTATAATGCAACAAAGA+AGG - Chr7:60848628-60848647 None:intergenic 20.0%
!! ATTTCAGAATATAGAATTGA+TGG + Chr7:60849031-60849050 MsG0780039257.01.T01:CDS 20.0%
!! CATCATTGCATAAAAAATTT+AGG - Chr7:60846875-60846894 None:intergenic 20.0%
!! GAAAATTGTCTTTCTATATA+TGG - Chr7:60847070-60847089 None:intergenic 20.0%
!! TACAAAAAATAATAGACTCT+TGG + Chr7:60850008-60850027 MsG0780039257.01.T01:intron 20.0%
!! TGAAACTAATTAAAAGAGTT+TGG - Chr7:60850360-60850379 None:intergenic 20.0%
!!! AAAAAAAACTAGGGTTTTTT+CGG - Chr7:60851356-60851375 None:intergenic 20.0%
!!! AATGTCATGATTTTAAATTG+CGG + Chr7:60847867-60847886 MsG0780039257.01.T01:intron 20.0%
!!! ACTTAAGTTTTGGTTTTTAT+AGG + Chr7:60850299-60850318 MsG0780039257.01.T01:intron 20.0%
!!! ATATTGTACTAAGTTTTTTG+GGG - Chr7:60851408-60851427 None:intergenic 20.0%
!!! CTAGTTTATGAATTTTAGAT+GGG + Chr7:60848103-60848122 MsG0780039257.01.T01:intron 20.0%
!!! TAATTAGTTTCAAGTTATGT+TGG + Chr7:60850368-60850387 MsG0780039257.01.T01:intron 20.0%
!!! TACATGGAATCAAATATTTT+TGG + Chr7:60849162-60849181 MsG0780039257.01.T01:intron 20.0%
!!! TAGCATTCTTCAAAATTTTA+TGG + Chr7:60850813-60850832 MsG0780039257.01.T01:intron 20.0%
!!! TAGTTTATGAATTTTAGATG+GGG + Chr7:60848104-60848123 MsG0780039257.01.T01:intron 20.0%
!!! TCATGAAAAGATTGAATTTT+TGG + Chr7:60851464-60851483 MsG0780039257.01.T01:intron 20.0%
!!! TCTACTTTTCTTTTGAAAAT+TGG + Chr7:60850192-60850211 MsG0780039257.01.T01:intron 20.0%
!!! TCTAGTTTATGAATTTTAGA+TGG + Chr7:60848102-60848121 MsG0780039257.01.T01:intron 20.0%
!!! TTAAAGAGATGAACTTTTAA+AGG + Chr7:60851032-60851051 MsG0780039257.01.T01:intron 20.0%
!!! TTACAAAAGTTGTTGATTTT+TGG + Chr7:60850221-60850240 MsG0780039257.01.T01:intron 20.0%
!!! TTTTATACTCTTAAACCAAA+GGG + Chr7:60848060-60848079 MsG0780039257.01.T01:intron 20.0%
!!! TTTTTATACTCTTAAACCAA+AGG + Chr7:60848059-60848078 MsG0780039257.01.T01:intron 20.0%
! AAATATCAAAAAATCACCTG+TGG - Chr7:60851627-60851646 None:intergenic 25.0%
! AATATTTGATTCCATGTATC+TGG - Chr7:60849160-60849179 None:intergenic 25.0%
! AATCAGAAATCTATGAAAAG+AGG + Chr7:60847407-60847426 MsG0780039257.01.T01:CDS 25.0%
! AGAACTAAACCAAAAAACTA+AGG - Chr7:60850688-60850707 None:intergenic 25.0%
! AGATTCTGATTATCAACATT+GGG + Chr7:60847111-60847130 MsG0780039257.01.T01:CDS 25.0%
! ATCAGAAATCTATGAAAAGA+GGG + Chr7:60847408-60847427 MsG0780039257.01.T01:CDS 25.0%
! ATCTCTGAATTATTGAATGT+TGG + Chr7:60846819-60846838 MsG0780039257.01.T01:intron 25.0%
! ATGTAACCAAAAAACACTAT+TGG + Chr7:60850750-60850769 MsG0780039257.01.T01:intron 25.0%
! ATTAGAGGTGAATTGTTATA+TGG + Chr7:60851429-60851448 MsG0780039257.01.T01:intron 25.0%
! ATTCACTTCAAAGAAATCAA+TGG + Chr7:60847345-60847364 MsG0780039257.01.T01:CDS 25.0%
! CAAAATACTTGCAAAATCAA+GGG + Chr7:60849337-60849356 MsG0780039257.01.T01:intron 25.0%
! CATATGAACCTATATACAAA+AGG + Chr7:60849713-60849732 MsG0780039257.01.T01:intron 25.0%
! CCATAATTAAAGAGTCAAAA+TGG - Chr7:60850602-60850621 None:intergenic 25.0%
! GCATTATAATATATGAAGCA+CGG + Chr7:60848636-60848655 MsG0780039257.01.T01:intron 25.0%
! GCTCTCAAAAAATAAGAAAA+AGG - Chr7:60850715-60850734 None:intergenic 25.0%
! GGAAATTATCAGAGATTATA+TGG + Chr7:60850489-60850508 MsG0780039257.01.T01:intron 25.0%
! TATCAATCCAAACAAAACAA+GGG + Chr7:60848221-60848240 MsG0780039257.01.T01:intron 25.0%
! TCAAAGAAAGAGCAAAAAAT+TGG + Chr7:60847716-60847735 MsG0780039257.01.T01:CDS 25.0%
! TGAAGTTGAGGAAAAAAAAA+TGG + Chr7:60851535-60851554 MsG0780039257.01.T01:CDS 25.0%
! TTAGAGGTGAATTGTTATAT+GGG + Chr7:60851430-60851449 MsG0780039257.01.T01:intron 25.0%
! TTCACTTCAAAGAAATCAAT+GGG + Chr7:60847346-60847365 MsG0780039257.01.T01:CDS 25.0%
! TTGCTCGAAAAAAATAGAAT+CGG + Chr7:60850258-60850277 MsG0780039257.01.T01:intron 25.0%
!! AAAAGTTCATCTCTTTAAAG+AGG - Chr7:60851030-60851049 None:intergenic 25.0%
!! AGTTTTTCTTCTAACAATGT+TGG + Chr7:60848529-60848548 MsG0780039257.01.T01:intron 25.0%
!! CAAATAGAGATGATAATGAT+AGG - Chr7:60846464-60846483 None:intergenic 25.0%
!! TATGAAGGAAACTTAAGTTT+TGG + Chr7:60850289-60850308 MsG0780039257.01.T01:intron 25.0%
!! TTCATAGATTTCTGATTTTG+AGG - Chr7:60847404-60847423 None:intergenic 25.0%
!! TTGTTTTCAATACCTATGTA+TGG + Chr7:60847755-60847774 MsG0780039257.01.T01:CDS 25.0%
!!! ACTAAACCAATAGTGTTTTT+TGG - Chr7:60850759-60850778 None:intergenic 25.0%
!!! ACTTTTCTTTTGAAAATTGG+TGG + Chr7:60850195-60850214 MsG0780039257.01.T01:intron 25.0%
!!! AGAAACTCTTTCATTTTTTG+CGG + Chr7:60851095-60851114 MsG0780039257.01.T01:intron 25.0%
!!! ATATATAATAGGTGTCACTT+TGG + Chr7:60849814-60849833 MsG0780039257.01.T01:intron 25.0%
!!! CCATTTTGACTCTTTAATTA+TGG + Chr7:60850599-60850618 MsG0780039257.01.T01:intron 25.0%
!!! TATTGTACTAAGTTTTTTGG+GGG - Chr7:60851407-60851426 None:intergenic 25.0%
!!! TCTCTTCTAAAGTATTTTCT+TGG + Chr7:60848285-60848304 MsG0780039257.01.T01:intron 25.0%
!!! TTCATCATGGTTTTAAATTG+CGG - Chr7:60848013-60848032 None:intergenic 25.0%
!!! TTTTAAGGGAATAAAGCTTT+TGG + Chr7:60849765-60849784 MsG0780039257.01.T01:intron 25.0%
!!! TTTTGGTTACATAAGAAAGA+AGG - Chr7:60850742-60850761 None:intergenic 25.0%
AAAATGCAGATTGCATACAT+TGG + Chr7:60849119-60849138 MsG0780039257.01.T01:CDS 30.0%
AACACTGACATACATTTCAT+TGG + Chr7:60847658-60847677 MsG0780039257.01.T01:CDS 30.0%
AAGAAAAGTAGATAGTGACA+CGG - Chr7:60850184-60850203 None:intergenic 30.0%
AATTGTTAAGTGAAGAAGAG+AGG + Chr7:60849086-60849105 MsG0780039257.01.T01:CDS 30.0%
ACAAGGTTTGAACTTGAAAA+TGG - Chr7:60846546-60846565 None:intergenic 30.0%
ATGCTAGTATAGAATTCTAC+TGG + Chr7:60847614-60847633 MsG0780039257.01.T01:CDS 30.0%
ATTTACCAGAAGTCAAGATT+GGG + Chr7:60848856-60848875 MsG0780039257.01.T01:intron 30.0%
CACGAAGGAAAAAAAATGAT+GGG + Chr7:60849676-60849695 MsG0780039257.01.T01:intron 30.0%
CAGATTCTGATTATCAACAT+TGG + Chr7:60847110-60847129 MsG0780039257.01.T01:CDS 30.0%
CATATTTCACCGCAATATAA+TGG - Chr7:60847917-60847936 None:intergenic 30.0%
CATGTAGAAAATTGCTTACA+AGG + Chr7:60848554-60848573 MsG0780039257.01.T01:intron 30.0%
CTAAACCAAAAAACTAAGGA+AGG - Chr7:60850684-60850703 None:intergenic 30.0%
CTATCAATCCAAACAAAACA+AGG + Chr7:60848220-60848239 MsG0780039257.01.T01:intron 30.0%
CTTCTTCATGTACTCTTTAT+AGG - Chr7:60849601-60849620 None:intergenic 30.0%
GAAAAGACTACTATTTGTAG+GGG + Chr7:60847322-60847341 MsG0780039257.01.T01:CDS 30.0%
GCAAAATACTTGCAAAATCA+AGG + Chr7:60849336-60849355 MsG0780039257.01.T01:intron 30.0%
GGAAAAGACTACTATTTGTA+GGG + Chr7:60847321-60847340 MsG0780039257.01.T01:CDS 30.0%
GGAATAATGAAAATCCATAG+AGG + Chr7:60846425-60846444 MsG0780039257.01.T01:CDS 30.0%
GGAATCACAATTAACATGTT+TGG - Chr7:60847182-60847201 None:intergenic 30.0%
GTGAGTATTATAAATCTCAG+AGG - Chr7:60848461-60848480 None:intergenic 30.0%
TCAGAAATCTATGAAAAGAG+GGG + Chr7:60847409-60847428 MsG0780039257.01.T01:CDS 30.0%
TCATTGGAGATACAAAGAAA+AGG + Chr7:60847674-60847693 MsG0780039257.01.T01:CDS 30.0%
TCATTGTTGAATGTTCATCA+TGG - Chr7:60848026-60848045 None:intergenic 30.0%
TCTTCAGTGTATACTGAAAA+TGG + Chr7:60849058-60849077 MsG0780039257.01.T01:CDS 30.0%
TGCATAAGTAATCTTTCTTG+AGG + Chr7:60849895-60849914 MsG0780039257.01.T01:intron 30.0%
TGCTAGTATAGAATTCTACT+GGG + Chr7:60847615-60847634 MsG0780039257.01.T01:CDS 30.0%
TTAAACCAAAGGGATGAAAA+TGG + Chr7:60848070-60848089 MsG0780039257.01.T01:intron 30.0%
TTTAGCCATTTATCCAAACA+AGG + Chr7:60847492-60847511 MsG0780039257.01.T01:intron 30.0%
! AAATACCATTTTCATCCCTT+TGG - Chr7:60848078-60848097 None:intergenic 30.0%
! AATTTAGGGTCCATTTGATA+CGG - Chr7:60846860-60846879 None:intergenic 30.0%
! ATGGGAATCTTTTGTATGTT+TGG + Chr7:60847364-60847383 MsG0780039257.01.T01:CDS 30.0%
! CTTGTAAGCAATTTTCTACA+TGG - Chr7:60848556-60848575 None:intergenic 30.0%
! CTTTTGTATGTTTGGTAGAA+TGG + Chr7:60847372-60847391 MsG0780039257.01.T01:CDS 30.0%
! GAGATGATAATGATAGGAAA+AGG - Chr7:60846458-60846477 None:intergenic 30.0%
! GGATTTTCATTATTCCTGAA+GGG - Chr7:60846421-60846440 None:intergenic 30.0%
! GTTAAAAACCCATTTTCCAT+TGG - Chr7:60847011-60847030 None:intergenic 30.0%
! TGGATTTTCATTATTCCTGA+AGG - Chr7:60846422-60846441 None:intergenic 30.0%
! TTGAACACCCTTTTGTATAT+AGG - Chr7:60849724-60849743 None:intergenic 30.0%
! TTTTCAATACCTATGTATGG+TGG + Chr7:60847758-60847777 MsG0780039257.01.T01:CDS 30.0%
! TTTTTACGATCCGTATCAAA+TGG + Chr7:60846847-60846866 MsG0780039257.01.T01:intron 30.0%
!! AGACTTACTTGATTTTAGTC+TGG - Chr7:60846582-60846601 None:intergenic 30.0%
!! AGTGCTTTTTGGATTCTTAA+TGG + Chr7:60849647-60849666 MsG0780039257.01.T01:intron 30.0%
!! GAATTTGTTTAAGCCTTGTT+TGG - Chr7:60847508-60847527 None:intergenic 30.0%
!! TCATTTAGCAATGGATTGAA+GGG + Chr7:60848128-60848147 MsG0780039257.01.T01:intron 30.0%
!! TTAAGCCTTGTTTGGATAAA+TGG - Chr7:60847500-60847519 None:intergenic 30.0%
!! TTCATTTAGCAATGGATTGA+AGG + Chr7:60848127-60848146 MsG0780039257.01.T01:intron 30.0%
!!! AGTATCCTTCCTTAGTTTTT+TGG + Chr7:60850676-60850695 MsG0780039257.01.T01:intron 30.0%
AAGCAGACTAAATATTGCAG+TGG - Chr7:60848409-60848428 None:intergenic 35.0%
ACAAGTTATGTCAGTGTAGA+TGG - Chr7:60847047-60847066 None:intergenic 35.0%
ACTTTCTCTCTCTATTGCTT+TGG + Chr7:60850155-60850174 MsG0780039257.01.T01:intron 35.0%
AGGAGATTGTAAATGCAACA+TGG + Chr7:60846942-60846961 MsG0780039257.01.T01:CDS 35.0%
AGTCAATGTAGCCACAATTA+CGG + Chr7:60847946-60847965 MsG0780039257.01.T01:intron 35.0%
ATAGTGCTCAACAAATCTCT+AGG - Chr7:60848798-60848817 None:intergenic 35.0%
ATCACCTGCATTAGACTTAA+TGG + Chr7:60848496-60848515 MsG0780039257.01.T01:intron 35.0%
ATCTTATGCAGTTGAAGTTG+AGG + Chr7:60851523-60851542 MsG0780039257.01.T01:intron 35.0%
CAACATTGCCAATGGAAAAT+GGG + Chr7:60847000-60847019 MsG0780039257.01.T01:CDS 35.0%
CAAGTTATGTCAGTGTAGAT+GGG - Chr7:60847046-60847065 None:intergenic 35.0%
CAATTGCAGCCACAATATAA+CGG - Chr7:60847980-60847999 None:intergenic 35.0%
CACTAGTTGAAATGCACAAA+AGG - Chr7:60850431-60850450 None:intergenic 35.0%
CAGCACTCAAAAAACTTCAA+GGG + Chr7:60847300-60847319 MsG0780039257.01.T01:CDS 35.0%
CAGTGTATACTGAAAATGGA+GGG + Chr7:60849062-60849081 MsG0780039257.01.T01:CDS 35.0%
CATTTACCAGAAGTCAAGAT+TGG + Chr7:60848855-60848874 MsG0780039257.01.T01:intron 35.0%
CGAAAATGAGGATATAGTTG+TGG - Chr7:60846618-60846637 None:intergenic 35.0%
CTCTTACTTTGTCAATGAAG+TGG + Chr7:60851586-60851605 MsG0780039257.01.T01:CDS 35.0%
GAAAGAGCAAAAAATTGGAC+AGG + Chr7:60847721-60847740 MsG0780039257.01.T01:CDS 35.0%
GAATCGGTGAGAAATTATGA+AGG + Chr7:60850274-60850293 MsG0780039257.01.T01:intron 35.0%
GAGAGATAAAGTTGTCACAT+AGG - Chr7:60850116-60850135 None:intergenic 35.0%
GAGATAATTGCAAACCTTGA+TGG - Chr7:60851289-60851308 None:intergenic 35.0%
GCACGAAGGAAAAAAAATGA+TGG + Chr7:60849675-60849694 MsG0780039257.01.T01:intron 35.0%
GCTTCTATAACGAATGTTCA+AGG + Chr7:60850653-60850672 MsG0780039257.01.T01:intron 35.0%
GGATAAACGTATAATGAGTG+TGG + Chr7:60848952-60848971 MsG0780039257.01.T01:CDS 35.0%
GGGAAAAGACTACTATTTGT+AGG + Chr7:60847320-60847339 MsG0780039257.01.T01:CDS 35.0%
GTTACATTGATGAATGTCAC+TGG - Chr7:60849007-60849026 None:intergenic 35.0%
GTTGAGGAAAAAAAAATGGC+TGG + Chr7:60851539-60851558 MsG0780039257.01.T01:CDS 35.0%
TCAGCACTCAAAAAACTTCA+AGG + Chr7:60847299-60847318 MsG0780039257.01.T01:CDS 35.0%
TCAGTGTATACTGAAAATGG+AGG + Chr7:60849061-60849080 MsG0780039257.01.T01:CDS 35.0%
TCATTCAGTCTTCAAAGTCA+AGG + Chr7:60847436-60847455 MsG0780039257.01.T01:CDS 35.0%
TGATGAGTAGGAATTGTACT+CGG + Chr7:60848433-60848452 MsG0780039257.01.T01:intron 35.0%
TTAAATTGCGGTTGTAGTTG+CGG + Chr7:60847879-60847898 MsG0780039257.01.T01:intron 35.0%
TTAAGTCTAATGCAGGTGAT+TGG - Chr7:60848496-60848515 None:intergenic 35.0%
TTACTTTGTCAATGAAGTGG+TGG + Chr7:60851589-60851608 MsG0780039257.01.T01:CDS 35.0%
TTGGCAAGCTGGATTTAAAA+AGG + Chr7:60850387-60850406 MsG0780039257.01.T01:intron 35.0%
TTGTACCATGTTCGAATGTA+GGG - Chr7:60851005-60851024 None:intergenic 35.0%
TTTACCAGAAGTCAAGATTG+GGG + Chr7:60848857-60848876 MsG0780039257.01.T01:intron 35.0%
TTTAGTCTGGTGTTCTTTCT+AGG - Chr7:60846569-60846588 None:intergenic 35.0%
TTTCACCGCAATATAATGGT+TGG - Chr7:60847913-60847932 None:intergenic 35.0%
TTTGAAGACTTGGGCTAATT+GGG + Chr7:60848188-60848207 MsG0780039257.01.T01:intron 35.0%
! AAGTTCTCGTTCGTTTGTTA+CGG + Chr7:60846697-60846716 MsG0780039257.01.T01:intron 35.0%
! CAATTAACATGTTTGGAGTG+TGG - Chr7:60847175-60847194 None:intergenic 35.0%
! TGTATGCAATCTGCATTTTG+TGG - Chr7:60849118-60849137 None:intergenic 35.0%
!! ACAAGTTAGCTTTGAAGACT+TGG + Chr7:60848178-60848197 MsG0780039257.01.T01:intron 35.0%
!! AGGTGATAAGAAAGTTGATG+AGG + Chr7:60846922-60846941 MsG0780039257.01.T01:intron 35.0%
!! AGTGAGGAAAAAGAAGCATT+GGG + Chr7:60848919-60848938 MsG0780039257.01.T01:CDS 35.0%
!! ATAATAGGTGTCACTTTGGA+TGG + Chr7:60849818-60849837 MsG0780039257.01.T01:intron 35.0%
!! ATTTGGAGTTGAGTGCTTTT+TGG + Chr7:60849636-60849655 MsG0780039257.01.T01:intron 35.0%
!! CAAGTTAGCTTTGAAGACTT+GGG + Chr7:60848179-60848198 MsG0780039257.01.T01:intron 35.0%
!! CTTGATGGATTGTGATGTTA+GGG - Chr7:60851274-60851293 None:intergenic 35.0%
!! TGTAGATGGGCTTTATTGAT+TGG - Chr7:60847033-60847052 None:intergenic 35.0%
!!! AAGAAGACCCTTGTTTTGTT+TGG - Chr7:60848231-60848250 None:intergenic 35.0%
!!! CTCTTTCATTTTTTGCGGAT+AGG + Chr7:60851100-60851119 MsG0780039257.01.T01:intron 35.0%
!!! GAAAAGGCATTTTTCCTCTA+TGG - Chr7:60846442-60846461 None:intergenic 35.0%
!!! TGGTGGCAATTTTTTGCATA+GGG + Chr7:60851559-60851578 MsG0780039257.01.T01:CDS 35.0%
!!! TTTGGTTTTTATAGGACTGC+TGG + Chr7:60850307-60850326 MsG0780039257.01.T01:intron 35.0%
AAGAATGCTACCAATGTTCC+AGG - Chr7:60850803-60850822 None:intergenic 40.0%
ACCTGCTTCGAATGAAAAGT+TGG + Chr7:60846757-60846776 MsG0780039257.01.T01:intron 40.0%
ACTTGGATGTGTTGTAACAC+AGG + Chr7:60847585-60847604 MsG0780039257.01.T01:intron 40.0%
AGATGGGGTTCATTTAGCAA+TGG + Chr7:60848119-60848138 MsG0780039257.01.T01:intron 40.0%
AGCGTCAACGATAGATTAGA+AGG - Chr7:60850636-60850655 None:intergenic 40.0%
ATGATGCACAGATACAGACA+CGG - Chr7:60848766-60848785 None:intergenic 40.0%
CAACTTTCTTATCACCTGCT+AGG - Chr7:60846919-60846938 None:intergenic 40.0%
CCTAACATCACAATCCATCA+AGG + Chr7:60851272-60851291 MsG0780039257.01.T01:intron 40.0%
CTGATTATCAACATTGGGAG+TGG + Chr7:60847116-60847135 MsG0780039257.01.T01:CDS 40.0%
CTTTCTTATCCTTCCTTTCC+TGG + Chr7:60850782-60850801 MsG0780039257.01.T01:intron 40.0%
GAAGAATGCAACATTGCCAA+TGG + Chr7:60846992-60847011 MsG0780039257.01.T01:CDS 40.0%
GAGGAAAAAAAAATGGCTGG+TGG + Chr7:60851542-60851561 MsG0780039257.01.T01:CDS 40.0%
GCAACATTGCCAATGGAAAA+TGG + Chr7:60846999-60847018 MsG0780039257.01.T01:CDS 40.0%
GCTTCCATTAAGTCTAATGC+AGG - Chr7:60848503-60848522 None:intergenic 40.0%
GGGAAGATTGAAGATGTTTC+TGG - Chr7:60851254-60851273 None:intergenic 40.0%
GTCAATGAAGTGGTGGTAAT+AGG + Chr7:60851596-60851615 MsG0780039257.01.T01:CDS 40.0%
GTTGTACCATGTTCGAATGT+AGG - Chr7:60851006-60851025 None:intergenic 40.0%
TCAAGTAGCATGCGAAAATG+AGG - Chr7:60846630-60846649 None:intergenic 40.0%
TGTATTGTGATTGTCCTAGC+AGG + Chr7:60846902-60846921 MsG0780039257.01.T01:intron 40.0%
TGTTAGACTCAACCAGGTAT+GGG - Chr7:60847642-60847661 None:intergenic 40.0%
! ACCAACTTTTCATTCGAAGC+AGG - Chr7:60846761-60846780 None:intergenic 40.0%
! AGTTCTCGTTCGTTTGTTAC+GGG + Chr7:60846698-60846717 MsG0780039257.01.T01:intron 40.0%
! ATGCAACATGGATTGATGAC+AGG + Chr7:60846954-60846973 MsG0780039257.01.T01:CDS 40.0%
! CAATGCTTCTTTTTCCTCAC+TGG - Chr7:60848920-60848939 None:intergenic 40.0%
! CAGTGAGGAAAAAGAAGCAT+TGG + Chr7:60848918-60848937 MsG0780039257.01.T01:CDS 40.0%
! CTTTGAAGACTTGGGCTAAT+TGG + Chr7:60848187-60848206 MsG0780039257.01.T01:intron 40.0%
! GTTTTTATAGGACTGCTGGT+TGG + Chr7:60850311-60850330 MsG0780039257.01.T01:intron 40.0%
! TTCAAGTTATGTTGGCAAGC+TGG + Chr7:60850376-60850395 MsG0780039257.01.T01:intron 40.0%
!! AAAAAGAAGCATTGGGGAAC+TGG + Chr7:60848926-60848945 MsG0780039257.01.T01:CDS 40.0%
!! CCTTGATGGATTGTGATGTT+AGG - Chr7:60851275-60851294 None:intergenic 40.0%
!! GTGAGGAAAAAGAAGCATTG+GGG + Chr7:60848920-60848939 MsG0780039257.01.T01:CDS 40.0%
!!! AGTTTTTTGAGTGCTGACAC+TGG - Chr7:60847296-60847315 None:intergenic 40.0%
!!! CTGGTGGCAATTTTTTGCAT+AGG + Chr7:60851558-60851577 MsG0780039257.01.T01:CDS 40.0%
!!! GTCTGCTTTTTGTGATGAGT+AGG + Chr7:60848421-60848440 MsG0780039257.01.T01:intron 40.0%
ACCAATGTTCCAGGAAAGGA+AGG - Chr7:60850794-60850813 None:intergenic 45.0%
ACCACTCATCCACCATACAT+AGG - Chr7:60847770-60847789 None:intergenic 45.0%
AGCAAAAAATTGGACAGGCG+TGG + Chr7:60847726-60847745 MsG0780039257.01.T01:CDS 45.0%
CAAGTCCCTACATTCGAACA+TGG + Chr7:60850997-60851016 MsG0780039257.01.T01:intron 45.0%
CAATGTCACCTACACACACA+AGG + Chr7:60848256-60848275 MsG0780039257.01.T01:intron 45.0%
CGCTGCCAACCATTATATTG+CGG + Chr7:60847905-60847924 MsG0780039257.01.T01:intron 45.0%
GAGAAAGACCTTGTGTGTGT+AGG - Chr7:60848267-60848286 None:intergenic 45.0%
GTGTTAGACTCAACCAGGTA+TGG - Chr7:60847643-60847662 None:intergenic 45.0%
GTTAGACTCAACCAGGTATG+GGG - Chr7:60847641-60847660 None:intergenic 45.0%
GTTGTGAGGCCGTTATATTG+TGG + Chr7:60847968-60847987 MsG0780039257.01.T01:intron 45.0%
GTTTCCCCAATCTTGACTTC+TGG - Chr7:60848864-60848883 None:intergenic 45.0%
TAGCCACAATTACGGTTGTG+AGG + Chr7:60847954-60847973 MsG0780039257.01.T01:intron 45.0%
TCAATGAGACAAAGCCAGTG+AGG + Chr7:60848903-60848922 MsG0780039257.01.T01:CDS 45.0%
TCCTTCCTTTCCTGGAACAT+TGG + Chr7:60850790-60850809 MsG0780039257.01.T01:intron 45.0%
TGCTACCAATGTTCCAGGAA+AGG - Chr7:60850798-60850817 None:intergenic 45.0%
TGTCAGTGTTAGACTCAACC+AGG - Chr7:60847648-60847667 None:intergenic 45.0%
TTGGAGTGTGGAACTTACCT+TGG - Chr7:60847163-60847182 None:intergenic 45.0%
! CGCATGCTACTTGACTCTAA+AGG + Chr7:60846636-60846655 MsG0780039257.01.T01:intron 45.0%
! TGCATACATTGGTGTTTGCC+TGG + Chr7:60849130-60849149 MsG0780039257.01.T01:CDS 45.0%
! TTCCATGTATCTGGAACACC+AGG - Chr7:60849151-60849170 None:intergenic 45.0%
! TTTATAGGACTGCTGGTTGG+TGG + Chr7:60850314-60850333 MsG0780039257.01.T01:intron 45.0%
!! ACCTATGTATGGTGGATGAG+TGG + Chr7:60847766-60847785 MsG0780039257.01.T01:CDS 45.0%
!! CTGGTGTTCTTTCTAGGACA+AGG - Chr7:60846563-60846582 None:intergenic 45.0%
!! TATGGTGGATGAGTGGTTCT+AGG + Chr7:60847773-60847792 MsG0780039257.01.T01:CDS 45.0%
!!! AAAAATCATATAATTTTTTA+TGG - Chr7:60849869-60849888 None:intergenic 5.0%
!!! ATTTATTTAATTTTGAATTT+TGG + Chr7:60851499-60851518 MsG0780039257.01.T01:intron 5.0%
AGAAAACAGTGACACGTGCG+AGG - Chr7:60851175-60851194 None:intergenic 50.0%
CAGAAGATTGCACCTTGCCA+AGG + Chr7:60847143-60847162 MsG0780039257.01.T01:CDS 50.0%
CTTGGCAAGGTGCAATCTTC+TGG - Chr7:60847145-60847164 None:intergenic 50.0%
GAAAACAGTGACACGTGCGA+GGG - Chr7:60851174-60851193 None:intergenic 50.0%
GTGGTAATAGGTCTTGCCAC+AGG + Chr7:60851608-60851627 MsG0780039257.01.T01:CDS 50.0%
GTGTGGAACTTACCTTGGCA+AGG - Chr7:60847158-60847177 None:intergenic 50.0%
TCTTAATGGCGTGTGCACGA+AGG + Chr7:60849661-60849680 MsG0780039257.01.T01:intron 50.0%
TGACACGTGCGAGGGTTATT+GGG - Chr7:60851166-60851185 None:intergenic 50.0%
TGCCTGGTGTTCCAGATACA+TGG + Chr7:60849146-60849165 MsG0780039257.01.T01:intron 50.0%
TGTGGCTGCAATTGCGATTG+TGG + Chr7:60847986-60848005 MsG0780039257.01.T01:intron 50.0%
!! GAAGCATTGGGGAACTGGTT+CGG + Chr7:60848931-60848950 MsG0780039257.01.T01:CDS 50.0%
ACACGTGCGAGGGTTATTGG+GGG - Chr7:60851164-60851183 None:intergenic 55.0%
ATTCTACTGGGCCCCATACC+TGG + Chr7:60847627-60847646 MsG0780039257.01.T01:CDS 55.0%
CACGGACACCAGACATGACA+CGG - Chr7:60848748-60848767 None:intergenic 55.0%
CGGCCTCACAACCGTAATTG+TGG - Chr7:60847960-60847979 None:intergenic 55.0%
GACACGTGCGAGGGTTATTG+GGG - Chr7:60851165-60851184 None:intergenic 55.0%
GTCAGTGTCCGTGTCATGTC+TGG + Chr7:60848737-60848756 MsG0780039257.01.T01:intron 55.0%
GTGACACGTGCGAGGGTTAT+TGG - Chr7:60851167-60851186 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 60846413 60851649 60846413 ID=MsG0780039257.01;Name=MsG0780039257.01
Chr7 mRNA 60846413 60851649 60846413 ID=MsG0780039257.01.T01;Parent=MsG0780039257.01;Name=MsG0780039257.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|6|0|398
Chr7 exon 60846413 60846593 60846413 ID=MsG0780039257.01.T01:exon:8541;Parent=MsG0780039257.01.T01
Chr7 exon 60846924 60847164 60846924 ID=MsG0780039257.01.T01:exon:8542;Parent=MsG0780039257.01.T01
Chr7 exon 60847286 60847457 60847286 ID=MsG0780039257.01.T01:exon:8543;Parent=MsG0780039257.01.T01
Chr7 exon 60847607 60847806 60847607 ID=MsG0780039257.01.T01:exon:8544;Parent=MsG0780039257.01.T01
Chr7 exon 60848865 60849151 60848865 ID=MsG0780039257.01.T01:exon:8545;Parent=MsG0780039257.01.T01
Chr7 exon 60851534 60851649 60851534 ID=MsG0780039257.01.T01:exon:8546;Parent=MsG0780039257.01.T01
Chr7 CDS 60846413 60846593 60846413 ID=MsG0780039257.01.T01:cds;Parent=MsG0780039257.01.T01
Chr7 CDS 60846924 60847164 60846924 ID=MsG0780039257.01.T01:cds;Parent=MsG0780039257.01.T01
Chr7 CDS 60847286 60847457 60847286 ID=MsG0780039257.01.T01:cds;Parent=MsG0780039257.01.T01
Chr7 CDS 60847607 60847806 60847607 ID=MsG0780039257.01.T01:cds;Parent=MsG0780039257.01.T01
Chr7 CDS 60848865 60849151 60848865 ID=MsG0780039257.01.T01:cds;Parent=MsG0780039257.01.T01
Chr7 CDS 60851534 60851649 60851534 ID=MsG0780039257.01.T01:cds;Parent=MsG0780039257.01.T01
Gene Sequence

>MsG0780039257.01.T01

ATGATCCCTTCAGGAATAATGAAAATCCATAGAGGAAAAATGCCTTTTCCTATCATTATCATCTCTATTTGTATTCTTGTCTTCATTGCTGTTTTGTATGCTGAGAGACTCAGTTTTCTTTCTTCTAAGTCCATTTTCAAGTTCAAACCTTGTCCTAGAAAGAACACCAGACTAAAATCAAGTGATAAGAAAGTTGATGAGGAGATTGTAAATGCAACATGGATTGATGACAGGTTTGATTTTGACTCAGAAGAATGCAACATTGCCAATGGAAAATGGGTTTTTAACCAATCAATAAAGCCCATCTACACTGACATAACTTGTCCATATATAGAAAGACAATTTTCTTGTATAAAAAATGGTAGAACAGATTCTGATTATCAACATTGGGAGTGGCAGCCAGAAGATTGCACCTTGCCAAGTTTCAATCCAGTGTCAGCACTCAAAAAACTTCAAGGGAAAAGACTACTATTTGTAGGGGATTCACTTCAAAGAAATCAATGGGAATCTTTTGTATGTTTGGTAGAATGGATCATACCTCAAAATCAGAAATCTATGAAAAGAGGGGTTGTTCATTCAGTCTTCAAAGTCAAGGAATACAATGCTAGTATAGAATTCTACTGGGCCCCATACCTGGTTGAGTCTAACACTGACATACATTTCATTGGAGATACAAAGAAAAGGATAATAAAAGTGGATACTATCAAAGAAAGAGCAAAAAATTGGACAGGCGTGGATATTCTTGTTTTCAATACCTATGTATGGTGGATGAGTGGTTCTAGGATTAAATCATTAAGTCAAGATTGGGGAAACATGAAAGATGAGAAATGCTTCAATGAGACAAAGCCAGTGAGGAAAAAGAAGCATTGGGGAACTGGTTCGGATAAACGTATAATGAGTGTGGTAGCAAAAGTTGTGAAGAAAATGAAAGTTCCAGTGACATTCATCAATGTAACACAAATTTCAGAATATAGAATTGATGGTCATTCTTCAGTGTATACTGAAAATGGAGGGAAATTGTTAAGTGAAGAAGAGAGGACAAATCCACAAAATGCAGATTGCATACATTGGTGTTTGCCTGTTGAAGTTGAGGAAAAAAAAATGGCTGGTGGCAATTTTTTGCATAGGGTTATCTCTTACTTTGTCAATGAAGTGGTGGTAATAGGTCTTGCCACAGGTGATTTTTTGATATTTTGA

Protein sequence

>MsG0780039257.01.T01

MIPSGIMKIHRGKMPFPIIIISICILVFIAVLYAERLSFLSSKSIFKFKPCPRKNTRLKSSDKKVDEEIVNATWIDDRFDFDSEECNIANGKWVFNQSIKPIYTDITCPYIERQFSCIKNGRTDSDYQHWEWQPEDCTLPSFNPVSALKKLQGKRLLFVGDSLQRNQWESFVCLVEWIIPQNQKSMKRGVVHSVFKVKEYNASIEFYWAPYLVESNTDIHFIGDTKKRIIKVDTIKERAKNWTGVDILVFNTYVWWMSGSRIKSLSQDWGNMKDEKCFNETKPVRKKKHWGTGSDKRIMSVVAKVVKKMKVPVTFINVTQISEYRIDGHSSVYTENGGKLLSEEERTNPQNADCIHWCLPVEVEEKKMAGGNFLHRVISYFVNEVVVIGLATGDFLIF*