AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043017.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043017.01.T01 MTR_8g027745 96.765 371 12 0 50 420 1 371 0.0 734
MsG0880043017.01.T01 MTR_7g117350 55.968 377 136 12 50 411 1 362 1.86e-130 380
MsG0880043017.01.T01 MTR_7g117350 54.805 385 136 13 50 411 1 370 8.44e-128 374
MsG0880043017.01.T01 MTR_3g091200 42.210 353 189 9 66 408 29 376 6.01e-84 262
MsG0880043017.01.T01 MTR_8g099515 39.722 360 178 13 75 408 36 382 3.68e-60 201
MsG0880043017.01.T01 MTR_8g099495 34.688 369 200 11 75 411 36 395 1.07e-49 174
MsG0880043017.01.T01 MTR_5g009190 35.000 320 191 10 95 408 31 339 7.50e-48 167
MsG0880043017.01.T01 MTR_5g009200 33.613 357 202 13 79 408 47 395 5.47e-47 166
MsG0880043017.01.T01 MTR_5g009210 33.062 369 207 16 70 408 2 360 1.78e-39 145
MsG0880043017.01.T01 MTR_3g012550 46.000 150 66 2 276 415 16 160 6.07e-38 135
MsG0880043017.01.T01 MTR_1g031540 36.214 243 121 12 48 272 6 232 1.22e-26 113
MsG0880043017.01.T01 MTR_1g031460 33.054 239 128 11 53 272 11 236 1.79e-24 106
MsG0880043017.01.T01 MTR_1g031320 33.197 244 125 12 50 266 1 233 6.07e-24 104
MsG0880043017.01.T01 MTR_7g117340 39.634 164 51 5 84 246 5 121 5.88e-23 93.6
MsG0880043017.01.T01 MTR_1g031580 31.915 282 141 14 48 304 6 261 8.90e-23 101
MsG0880043017.01.T01 MTR_7g079280 40.217 92 55 0 324 415 69 160 8.15e-20 87.0
MsG0880043017.01.T01 MTR_8g028465 41.237 97 53 1 318 414 73 165 4.21e-19 85.5
MsG0880043017.01.T01 MTR_1g028080 30.453 243 130 11 75 304 36 252 6.40e-18 86.3
MsG0880043017.01.T01 MTR_1g056350 39.560 91 53 2 327 415 65 155 6.68e-18 81.3
MsG0880043017.01.T01 MTR_1g028130 29.752 242 133 11 75 304 36 252 3.33e-17 84.3
MsG0880043017.01.T01 MTR_1g090480 28.800 125 84 3 292 413 30 152 1.46e-16 77.4
MsG0880043017.01.T01 MTR_1g028290 36.364 165 89 6 82 238 45 201 3.85e-16 80.9
MsG0880043017.01.T01 MTR_1g027690 26.616 263 162 11 75 326 33 275 1.86e-15 79.0
MsG0880043017.01.T01 MTR_7g113800 38.400 125 74 2 291 412 45 169 2.25e-15 77.4
MsG0880043017.01.T01 MTR_7g079290 36.735 98 59 2 321 415 110 207 7.00e-15 73.6
MsG0880043017.01.T01 MTR_5g026730 34.074 135 81 4 282 413 15 144 9.15e-15 72.4
MsG0880043017.01.T01 MTR_2g041200 31.724 145 79 4 284 419 32 165 3.43e-14 70.9
MsG0880043017.01.T01 MTR_1g027970 28.879 232 130 12 82 300 37 246 4.74e-14 74.3
MsG0880043017.01.T01 MTR_1g090460 42.254 71 38 1 347 414 76 146 5.68e-14 69.7
MsG0880043017.01.T01 MTR_4g073230 29.630 189 108 7 81 252 44 224 6.20e-14 73.9
MsG0880043017.01.T01 MTR_5g026720 51.923 52 25 0 361 412 91 142 7.66e-14 69.3
MsG0880043017.01.T01 MTR_5g064990 41.176 85 49 1 335 418 114 198 8.08e-14 72.8
MsG0880043017.01.T01 MTR_3g071300 32.847 137 78 5 275 407 24 150 8.19e-14 69.7
MsG0880043017.01.T01 MTR_5g013030 31.098 164 97 7 82 238 29 183 1.66e-13 70.5
MsG0880043017.01.T01 MTR_1g082550 34.058 138 64 4 291 412 50 176 2.73e-13 71.2
MsG0880043017.01.T01 MTR_8g032690 62.791 43 16 0 363 405 19 61 3.33e-13 66.2
MsG0880043017.01.T01 MTR_6g087150 28.758 153 92 5 255 406 26 162 4.74e-13 70.5
MsG0880043017.01.T01 MTR_4g056590 45.070 71 34 1 335 405 100 165 1.43e-12 66.6
MsG0880043017.01.T01 MTR_8g009190 30.000 140 93 2 277 416 24 158 2.06e-12 68.2
MsG0880043017.01.T01 MTR_2g436100 42.105 76 42 2 330 405 88 161 2.15e-12 67.8
MsG0880043017.01.T01 MTR_3g091620 40.964 83 37 2 329 406 95 170 2.34e-12 68.2
MsG0880043017.01.T01 MTR_7g116180 41.096 73 42 1 335 406 67 139 2.84e-12 65.5
MsG0880043017.01.T01 MTR_7g076250 55.319 47 21 0 359 405 86 132 3.05e-12 65.5
MsG0880043017.01.T01 MTR_7g116220 39.474 76 45 1 332 406 67 142 3.61e-12 65.1
MsG0880043017.01.T01 MTR_5g064890 34.351 131 64 5 292 405 71 196 3.70e-12 67.8
MsG0880043017.01.T01 MTR_1g070425 41.096 73 42 1 335 406 68 140 4.91e-12 64.7
MsG0880043017.01.T01 MTR_3g100400 37.037 81 47 2 334 413 129 206 5.11e-12 67.8
MsG0880043017.01.T01 MTR_8g092985 35.526 76 48 1 331 406 107 181 7.02e-12 65.1
MsG0880043017.01.T01 MTR_1g492830 52.083 48 23 0 360 407 85 132 8.02e-12 65.1
MsG0880043017.01.T01 MTR_4g093830 38.095 84 48 2 335 417 126 206 1.02e-11 66.2
MsG0880043017.01.T01 MTR_5g064980 37.975 79 48 1 335 412 108 186 1.39e-11 66.2
MsG0880043017.01.T01 MTR_8g092930 36.111 72 45 1 335 406 112 182 1.55e-11 64.3
MsG0880043017.01.T01 MTR_8g093010 28.696 115 80 2 292 406 65 177 1.73e-11 63.9
MsG0880043017.01.T01 MTR_1g074190 34.188 117 71 2 296 407 60 175 2.34e-11 65.1
MsG0880043017.01.T01 MTR_3g081030 40.845 71 39 1 341 411 100 167 2.55e-11 63.5
MsG0880043017.01.T01 MTR_3g099650 36.145 83 52 1 335 416 107 189 3.60e-11 64.7
MsG0880043017.01.T01 MTR_3g095560 29.032 124 83 2 282 405 60 178 3.69e-11 63.5
MsG0880043017.01.T01 MTR_8g092840 36.111 72 45 1 335 406 113 183 3.80e-11 63.2
MsG0880043017.01.T01 MTR_7g116210 51.111 45 22 0 362 406 34 78 4.11e-11 60.5
MsG0880043017.01.T01 MTR_3g078470 34.722 72 47 0 335 406 76 147 4.40e-11 62.8
MsG0880043017.01.T01 MTR_8g063660 39.189 74 43 1 334 407 67 138 4.53e-11 64.3
MsG0880043017.01.T01 MTR_8g092960 36.111 72 45 1 335 406 103 173 4.95e-11 62.8
MsG0880043017.01.T01 MTR_8g089880 39.726 73 40 2 334 405 126 195 5.17e-11 63.5
MsG0880043017.01.T01 MTR_5g034790 39.189 74 43 1 334 407 115 186 6.33e-11 63.9
MsG0880043017.01.T01 MTR_1g070140 38.824 85 43 3 335 415 103 182 7.02e-11 63.5
MsG0880043017.01.T01 MTR_8g071815 28.477 151 90 5 266 413 5 140 8.99e-11 61.2
MsG0880043017.01.T01 MTR_7g116200 51.111 45 22 0 362 406 92 136 9.40e-11 60.8
MsG0880043017.01.T01 MTR_3g110190 44.231 52 28 1 355 405 83 134 9.50e-11 63.2
MsG0880043017.01.T01 MTR_1g100737 51.163 43 21 0 363 405 123 165 9.56e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043017.01.T01 AT2G46495 46.742 353 171 9 68 411 24 368 3.71e-94 288
MsG0880043017.01.T01 AT2G25410 43.988 341 186 5 75 410 34 374 4.95e-90 277
MsG0880043017.01.T01 AT2G46495 45.299 351 147 10 70 411 26 340 2.34e-85 264
MsG0880043017.01.T01 AT5G53110 39.489 352 188 10 73 408 33 375 1.18e-75 241
MsG0880043017.01.T01 AT2G46494 42.900 331 174 8 85 409 41 362 3.51e-75 239
MsG0880043017.01.T01 AT1G28040 42.623 305 152 9 117 407 2 297 4.59e-63 205
MsG0880043017.01.T01 AT5G36001 37.571 354 156 10 70 420 30 321 1.97e-59 197
MsG0880043017.01.T01 AT5G07040 47.586 145 73 2 275 419 9 150 2.82e-38 136
MsG0880043017.01.T01 AT5G36001 40.976 205 100 7 70 271 30 216 8.52e-32 120
MsG0880043017.01.T01 AT2G46493 34.597 211 107 5 202 409 2 184 2.75e-31 118
MsG0880043017.01.T01 AT2G35910 52.439 82 35 2 335 415 121 199 8.68e-23 96.3
MsG0880043017.01.T01 AT3G61550 43.299 97 46 1 332 419 96 192 1.26e-19 87.4
MsG0880043017.01.T01 AT2G46160 44.828 87 42 1 332 412 101 187 4.31e-19 85.9
MsG0880043017.01.T01 AT2G46160 44.828 87 42 1 332 412 101 187 4.31e-19 85.9
MsG0880043017.01.T01 AT5G06490 41.176 85 45 1 333 412 94 178 1.30e-16 78.2
MsG0880043017.01.T01 AT4G09100 42.857 77 43 1 335 410 56 132 2.20e-16 75.9
MsG0880043017.01.T01 AT5G27420 41.489 94 51 2 330 419 90 183 3.74e-14 73.9
MsG0880043017.01.T01 AT1G35330 35.075 134 74 4 290 412 47 178 3.74e-14 73.6
MsG0880043017.01.T01 AT2G34990 30.435 138 93 3 269 405 3 138 4.33e-14 73.2
MsG0880043017.01.T01 AT2G34990 30.435 138 93 3 269 405 25 160 4.64e-14 73.2
MsG0880043017.01.T01 AT3G05200 31.875 160 95 4 254 405 17 170 4.83e-14 73.9
MsG0880043017.01.T01 AT4G09120 34.559 136 70 4 282 412 51 172 6.42e-14 73.2
MsG0880043017.01.T01 AT4G09130 39.216 102 51 3 329 420 85 185 1.25e-13 72.4
MsG0880043017.01.T01 AT1G04360 35.570 149 83 5 270 407 32 178 4.48e-13 70.9
MsG0880043017.01.T01 AT4G17905 30.714 140 80 2 279 405 88 223 7.98e-13 69.7
MsG0880043017.01.T01 AT2G35000 31.496 127 83 2 283 405 51 177 9.45e-13 69.7
MsG0880043017.01.T01 AT4G09110 40.506 79 46 1 335 412 94 172 9.85e-13 68.9
MsG0880043017.01.T01 AT4G17905 30.714 140 80 2 279 405 62 197 1.10e-12 68.9
MsG0880043017.01.T01 AT1G22500 40.000 90 53 1 331 419 85 174 1.16e-12 69.3
MsG0880043017.01.T01 AT4G40070 44.000 75 41 1 334 407 94 168 1.36e-12 68.9
MsG0880043017.01.T01 AT1G80400 45.455 66 34 2 347 411 338 402 2.17e-12 68.9
MsG0880043017.01.T01 AT4G10160 40.964 83 46 1 330 412 67 146 2.23e-12 66.6
MsG0880043017.01.T01 AT5G05810 39.506 81 45 2 334 413 119 196 2.59e-12 68.6
MsG0880043017.01.T01 AT2G42350 40.260 77 43 1 335 411 75 148 4.16e-12 65.9
MsG0880043017.01.T01 AT1G23980 39.189 74 43 1 334 407 117 188 4.56e-12 67.4
MsG0880043017.01.T01 AT1G72200 41.772 79 45 1 335 412 115 193 4.68e-12 67.8
MsG0880043017.01.T01 AT4G28890 40.541 74 40 2 334 406 96 166 4.83e-12 67.8
MsG0880043017.01.T01 AT5G66070 33.333 108 62 3 309 406 112 219 5.88e-12 65.5
MsG0880043017.01.T01 AT5G66070 33.333 108 62 3 309 406 112 219 5.88e-12 65.5
MsG0880043017.01.T01 AT1G49220 36.275 102 58 3 311 406 78 178 8.15e-12 65.5
MsG0880043017.01.T01 AT3G60220 38.542 96 48 3 324 419 84 168 8.61e-12 66.6
MsG0880043017.01.T01 AT4G35840 31.933 119 74 2 294 405 115 233 9.23e-12 65.1
MsG0880043017.01.T01 AT1G49200 34.091 88 57 1 319 406 93 179 9.42e-12 65.1
MsG0880043017.01.T01 AT4G10150 39.759 83 47 1 330 412 81 160 1.10e-11 65.1
MsG0880043017.01.T01 AT1G33480 40.244 82 46 1 330 411 70 148 1.16e-11 65.1
MsG0880043017.01.T01 AT2G27940 33.663 101 54 3 313 406 89 183 1.66e-11 64.3
MsG0880043017.01.T01 AT5G43420 31.788 151 74 6 280 405 34 180 1.75e-11 65.9
MsG0880043017.01.T01 AT5G66070 48.980 49 25 0 358 406 195 243 1.77e-11 64.3
MsG0880043017.01.T01 AT1G14200 41.176 68 36 2 338 405 87 150 2.23e-11 62.8
MsG0880043017.01.T01 AT2G17730 31.092 119 75 2 294 405 120 238 2.38e-11 63.9
MsG0880043017.01.T01 AT1G76410 31.967 122 72 3 292 406 30 147 2.58e-11 62.8
MsG0880043017.01.T01 AT1G49230 29.412 119 80 2 291 406 57 174 2.59e-11 63.5
MsG0880043017.01.T01 AT3G48030 30.137 146 83 5 279 411 38 177 2.60e-11 64.3
MsG0880043017.01.T01 AT2G20030 29.060 117 77 3 293 406 54 167 2.75e-11 65.5
MsG0880043017.01.T01 AT5G57750 34.615 78 42 2 334 407 94 166 3.00e-11 63.2
MsG0880043017.01.T01 AT5G17600 40.244 82 45 2 325 405 106 184 4.79e-11 64.3
MsG0880043017.01.T01 AT1G49210 36.111 72 45 1 335 406 108 178 5.72e-11 62.8
MsG0880043017.01.T01 AT3G48030 30.137 146 83 5 279 411 116 255 5.99e-11 63.9
MsG0880043017.01.T01 AT3G18773 29.752 121 78 3 292 406 54 173 6.81e-11 62.4
MsG0880043017.01.T01 AT2G35420 39.024 82 45 2 324 405 69 145 8.39e-11 62.4

Find 88 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGCCACATAAAGAAAA+AGG 0.259554 8:-17743156 None:intergenic
AGTCGTGACTACACCTTCTT+AGG 0.282841 8:+17743423 MsG0880043017.01.T01:CDS
TGGAAACAATGTTTGCATTC+AGG 0.289536 8:-17745612 None:intergenic
GGGGAGAGTCGACGTGTTCC+TGG 0.295592 8:+17745522 MsG0880043017.01.T01:CDS
ACTGAAAGGGGAAACGAATT+AGG 0.325250 8:-17743185 None:intergenic
TCTGATCATTGTTATTCTAA+TGG 0.337767 8:+17745347 MsG0880043017.01.T01:CDS
GGCTGTTCATCTCAGAATAT+AGG 0.339403 8:+17743444 MsG0880043017.01.T01:CDS
ATTGAGGCTTAGAAGACGTT+TGG 0.339581 8:-17743370 None:intergenic
CGACTAAAAGAAGCAATAAA+AGG 0.352176 8:-17743405 None:intergenic
CCTGCAATTACTGTGGCTTC+AGG 0.355180 8:-17745456 None:intergenic
AGCTTTGTCAATTCTCTGTC+TGG 0.363370 8:+17743534 MsG0880043017.01.T01:CDS
AACCGTTCTGGTCTTGCAAT+TGG 0.365731 8:-17743585 None:intergenic
CTTATGAGAAAGTAATTCTT+GGG 0.370232 8:+17745502 MsG0880043017.01.T01:CDS
GCAGGAGAGTTACGACAAAC+AGG 0.377091 8:-17745678 None:intergenic
TCTTATGAGAAAGTAATTCT+TGG 0.381733 8:+17745501 MsG0880043017.01.T01:CDS
TATCCTTATTGTGGCTATCC+TGG 0.384579 8:+17743219 MsG0880043017.01.T01:CDS
TTTACTTCAGTAATTGAGTC+AGG 0.385408 8:-17741638 None:intergenic
ACCCCGGCCCTTCTTGAAGA+TGG 0.391942 8:-17742416 None:intergenic
ATCCAACAACTTCCGTCGTT+TGG 0.392248 8:-17745546 None:intergenic
TACTTTCTCATAAGATTCAA+TGG 0.398432 8:-17745493 None:intergenic
CCTGAAGCCACAGTAATTGC+AGG 0.408761 8:+17745456 MsG0880043017.01.T01:CDS
ATTCGTTTCCCCTTTCAGTT+AGG 0.411401 8:+17743189 MsG0880043017.01.T01:CDS
TTACCAGAAGTGCTGCTTCT+CGG 0.415149 8:+17745406 MsG0880043017.01.T01:CDS
TGACCGAGAAGCAGCACTTC+TGG 0.415992 8:-17745409 None:intergenic
TTGAGGCTTAGAAGACGTTT+GGG 0.423213 8:-17743369 None:intergenic
CCCCGGCCCTTCTTGAAGAT+GGG 0.425440 8:-17742415 None:intergenic
AGAGTTACTAAGACAATCAA+TGG 0.428456 8:-17743481 None:intergenic
TCGTTTATGGCGTATGCGAC+AGG 0.432440 8:-17743129 None:intergenic
AAACCAGGATAGCCACAATA+AGG 0.435316 8:-17743222 None:intergenic
CTTTACTGTTGTATTCTGCC+AGG 0.440731 8:-17745572 None:intergenic
TTACTAGAGGCAACATTAAG+AGG 0.477123 8:-17745708 None:intergenic
ATTACTGTGGCTTCAGGTTG+CGG 0.477514 8:-17745450 None:intergenic
AACCCATCTTCAAGAAGGGC+CGG 0.477868 8:+17742413 MsG0880043017.01.T01:CDS
CAGGTCCTGCCCTCATAGCT+TGG 0.480034 8:-17742337 None:intergenic
GCTGTTCATCTCAGAATATA+GGG 0.484289 8:+17743445 MsG0880043017.01.T01:CDS
CAACTTCCGTCGTTTGGTCC+AGG 0.484298 8:-17745540 None:intergenic
ACCCATCTTCAAGAAGGGCC+GGG 0.496704 8:+17742414 MsG0880043017.01.T01:CDS
ACATAGAATTCTTCAGAGTA+AGG 0.498143 8:-17743288 None:intergenic
TATTGCTCACCTAACTGAAA+GGG 0.502186 8:-17743198 None:intergenic
ATCATAGCACTATGCGTCAC+TGG 0.507674 8:+17745318 MsG0880043017.01.T01:CDS
GACAAAGCTAACTGAAGGAA+TGG 0.510349 8:-17743520 None:intergenic
CGGAAGTTGTTGGATATGCC+TGG 0.513577 8:+17745554 MsG0880043017.01.T01:CDS
ATGTGAAGTACCAAGCTATG+AGG 0.516901 8:+17742327 MsG0880043017.01.T01:CDS
GACCAAACGACGGAAGTTGT+TGG 0.524157 8:+17745544 MsG0880043017.01.T01:CDS
TCTCAAACCCATCTTCAAGA+AGG 0.528697 8:+17742408 MsG0880043017.01.T01:CDS
ACGTTTGGGAAGACAATCAT+CGG 0.534356 8:-17743355 None:intergenic
AGAAGTAATGGACATCTTGA+AGG 0.536590 8:+17743086 MsG0880043017.01.T01:intron
TTTGCAAGTCTGAGAAGTAA+TGG 0.540104 8:+17743074 MsG0880043017.01.T01:intron
GTGCAGATCTTCAATTAACA+TGG 0.544292 8:+17743634 MsG0880043017.01.T01:CDS
ATAGGACATCTTTACCTGGT+TGG 0.546643 8:-17743749 None:intergenic
CTGAGATGAACAGCCTAAGA+AGG 0.553624 8:-17743436 None:intergenic
GATTCACAATAACTGCAGTC+AGG 0.554160 8:-17743663 None:intergenic
ACATTAAGAGGAGAAGGAGC+AGG 0.559825 8:-17745696 None:intergenic
TGTTTCTCTGATTACCAACC+AGG 0.560713 8:+17743735 MsG0880043017.01.T01:CDS
ATATTGCTCACCTAACTGAA+AGG 0.561759 8:-17743199 None:intergenic
CAAGCTATGAGGGCAGGACC+TGG 0.564190 8:+17742338 MsG0880043017.01.T01:CDS
CCCATCTTCAAGAAGGGCCG+GGG 0.564829 8:+17742415 MsG0880043017.01.T01:CDS
GGTGAGCAATATCCTTATTG+TGG 0.564899 8:+17743210 MsG0880043017.01.T01:CDS
AAGTACCAAGCTATGAGGGC+AGG 0.567054 8:+17742332 MsG0880043017.01.T01:CDS
TGCTTCTCGGTCAGCACCAG+CGG 0.567276 8:+17745419 MsG0880043017.01.T01:CDS
AGAATAACAATGATCAGAGC+TGG 0.567847 8:-17745342 None:intergenic
GAGGCAACATTAAGAGGAGA+AGG 0.567930 8:-17745702 None:intergenic
TTAATTGAAGATCTGCACTA+AGG 0.568451 8:-17743629 None:intergenic
CTCAAACCCATCTTCAAGAA+GGG 0.573997 8:+17742409 MsG0880043017.01.T01:CDS
CGTTTGGGAAGACAATCATC+GGG 0.574221 8:-17743354 None:intergenic
GGTTGCGGTGATATTGCCGC+TGG 0.576865 8:-17745435 None:intergenic
GTGTGCTACAATGATAGAAT+AGG 0.583305 8:+17745378 MsG0880043017.01.T01:CDS
TGTGAAGTACCAAGCTATGA+GGG 0.584398 8:+17742328 MsG0880043017.01.T01:CDS
TTACTTCAGTAATTGAGTCA+GGG 0.592283 8:-17741637 None:intergenic
GAGTTACTAAGACAATCAAT+GGG 0.593741 8:-17743480 None:intergenic
GTCTTGCAATTGGAACTGAA+AGG 0.594777 8:-17743575 None:intergenic
ATTGCTCACCTAACTGAAAG+GGG 0.601036 8:-17743197 None:intergenic
ATGCTGATTGCATCGATGAG+TGG 0.601507 8:+17745634 MsG0880043017.01.T01:CDS
GTACAATTTAAGTTGAAACC+AGG 0.606022 8:-17743237 None:intergenic
TGCAGATCTTCAATTAACAT+GGG 0.617198 8:+17743635 MsG0880043017.01.T01:CDS
GCTATGAGGGCAGGACCTGG+TGG 0.625432 8:+17742341 MsG0880043017.01.T01:CDS
TTTCTCATAAGATTCAATGG+TGG 0.628140 8:-17745490 None:intergenic
ATCTAAACCTGCAATTACTG+TGG 0.628907 8:-17745463 None:intergenic
ATGGAAACAACTTCTCCACC+AGG 0.630379 8:-17742356 None:intergenic
GAATTGACAAAGCTAACTGA+AGG 0.634686 8:-17743525 None:intergenic
CAGCTGCTGAGAGATTCTGA+TGG 0.636966 8:-17742375 None:intergenic
TTCCAATTGCAAGACCAGAA+CGG 0.642475 8:+17743583 MsG0880043017.01.T01:CDS
ACTCATCGATGCAATCAGCA+TGG 0.644887 8:-17745632 None:intergenic
AATCATTCAAGCATTACTAG+AGG 0.645917 8:-17745721 None:intergenic
TTATGAGAAAGTAATTCTTG+GGG 0.648958 8:+17745503 MsG0880043017.01.T01:CDS
CAGGAGAGTTACGACAAACA+GGG 0.678810 8:-17745677 None:intergenic
CGTGTTCCTGGACCAAACGA+CGG 0.694755 8:+17745534 MsG0880043017.01.T01:CDS
GAATCGCATCAGCTAATGTG+TGG 0.708361 8:+17743681 MsG0880043017.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAAAAAAGATTTA+AGG + Chr8:17744704-17744723 MsG0880043017.01.T01:intron 10.0%
!! TTAATTAAGTATTAGAAATT+TGG - Chr8:17742025-17742044 None:intergenic 10.0%
!!! AAAAAAAAGTATTAGAAATT+TGG - Chr8:17741993-17742012 None:intergenic 10.0%
!!! TTTTTTCTTTTTTTTTTTGA+AGG - Chr8:17744698-17744717 None:intergenic 10.0%
!! AAAAGGCAATAAAATATTAA+CGG + Chr8:17744939-17744958 MsG0880043017.01.T01:intron 15.0%
!! ATTTGGAAATGTAATAAAAA+AGG - Chr8:17745220-17745239 None:intergenic 15.0%
!! CTATATAAAGAAAAAACAAT+TGG - Chr8:17742253-17742272 None:intergenic 15.0%
!! TTTGGAAATGTAATAAAAAA+GGG - Chr8:17745219-17745238 None:intergenic 15.0%
!!! AAGTCAAATAATATTTTATC+TGG - Chr8:17742956-17742975 None:intergenic 15.0%
!!! ATATCCAGAAATTAATTTTT+TGG + Chr8:17743851-17743870 MsG0880043017.01.T01:intron 15.0%
!!! GATGTTATATTTTAGAAAAA+TGG + Chr8:17744592-17744611 MsG0880043017.01.T01:intron 15.0%
!!! TTAATATTTTATTGCCTTTT+TGG - Chr8:17744939-17744958 None:intergenic 15.0%
!!! TTGCATTAATTTTTTTTTGA+AGG - Chr8:17744196-17744215 None:intergenic 15.0%
!!! TTTTTTGAAGAAATAACAAA+AGG - Chr8:17744893-17744912 None:intergenic 15.0%
!! AAATAGAATGGTAAACAAAT+TGG - Chr8:17741892-17741911 None:intergenic 20.0%
!! AATTGACTAATTCTTATAGT+AGG - Chr8:17742917-17742936 None:intergenic 20.0%
!! ACAAATATATCTAGACTTAT+AGG - Chr8:17742657-17742676 None:intergenic 20.0%
!! AGGAATAACTAGAAAAATAT+TGG + Chr8:17744020-17744039 MsG0880043017.01.T01:intron 20.0%
!! ATTACATTTCCAAATAAATG+AGG + Chr8:17745225-17745244 MsG0880043017.01.T01:intron 20.0%
!! CTAACCAAAAAATTAATTTC+TGG - Chr8:17743858-17743877 None:intergenic 20.0%
!! GCTTGTATTGAAAAATAAAA+TGG - Chr8:17742299-17742318 None:intergenic 20.0%
!! TAACCAAAAAAACTAATTTG+TGG - Chr8:17743823-17743842 None:intergenic 20.0%
!! TGAACAAATTCATATAAAAG+TGG + Chr8:17745003-17745022 MsG0880043017.01.T01:intron 20.0%
!! TGAATATTACTTATGATCAT+TGG + Chr8:17742730-17742749 MsG0880043017.01.T01:intron 20.0%
!!! AAATTTGGAATAGTTAGTTT+GGG - Chr8:17741978-17741997 None:intergenic 20.0%
!!! AATGTCATAAAGCATTTTAA+AGG - Chr8:17742460-17742479 None:intergenic 20.0%
!!! ATGTCATAAAGCATTTTAAA+GGG - Chr8:17742459-17742478 None:intergenic 20.0%
!!! TATCCACAAATTAGTTTTTT+TGG + Chr8:17743817-17743836 MsG0880043017.01.T01:intron 20.0%
!!! TTCAATATGCAAATTCTTTT+AGG + Chr8:17743776-17743795 MsG0880043017.01.T01:intron 20.0%
!!! TTTTACTGATTTGTTTGTTT+TGG - Chr8:17741733-17741752 None:intergenic 20.0%
!!! TTTTATTTTTCAATACAAGC+AGG + Chr8:17742299-17742318 MsG0880043017.01.T01:intron 20.0%
!!! TTTTTCTTTCTTTTTTCTGA+AGG - Chr8:17744819-17744838 None:intergenic 20.0%
! AAATAACAAAAGGAAGAGTT+GGG - Chr8:17744883-17744902 None:intergenic 25.0%
! AAGGAGAATTTGAAAAATTG+AGG - Chr8:17743389-17743408 None:intergenic 25.0%
! AATAGAATCCTTAAGTCAAT+AGG - Chr8:17744109-17744128 None:intergenic 25.0%
! ACAACATTATACTTCACTAA+TGG - Chr8:17744456-17744475 None:intergenic 25.0%
! ACTAGAAAAATATTGGTCAA+TGG + Chr8:17744027-17744046 MsG0880043017.01.T01:intron 25.0%
! ATCATCAAAGAAGAAGATTT+GGG - Chr8:17742119-17742138 None:intergenic 25.0%
! ATTTGCATATTGAAGAACAT+AGG - Chr8:17743770-17743789 None:intergenic 25.0%
! CAAATAAGACCTCATTTATT+TGG - Chr8:17745237-17745256 None:intergenic 25.0%
! CAGGAAAGATTAAGTAAAAA+AGG - Chr8:17743113-17743132 None:intergenic 25.0%
! CTTATGAGAAAGTAATTCTT+GGG + Chr8:17745502-17745521 MsG0880043017.01.T01:CDS 25.0%
! GAGATAGAAATAAAACTAGT+TGG + Chr8:17743978-17743997 MsG0880043017.01.T01:intron 25.0%
! TAACCAAAAAAACTACTTTC+TGG - Chr8:17743892-17743911 None:intergenic 25.0%
! TACATGCTTATTTCAGTTAA+TGG - Chr8:17742074-17742093 None:intergenic 25.0%
! TACTTTCTCATAAGATTCAA+TGG - Chr8:17745496-17745515 None:intergenic 25.0%
! TCTTATGAGAAAGTAATTCT+TGG + Chr8:17745501-17745520 MsG0880043017.01.T01:CDS 25.0%
! TGAATTAGCATGAATAATTG+TGG - Chr8:17742051-17742070 None:intergenic 25.0%
! TTACTTATGATCATTGGTAA+TGG + Chr8:17742736-17742755 MsG0880043017.01.T01:intron 25.0%
! TTATGAGAAAGTAATTCTTG+GGG + Chr8:17745503-17745522 MsG0880043017.01.T01:CDS 25.0%
! TTGTAGACATAAAAATGTCA+AGG + Chr8:17742835-17742854 MsG0880043017.01.T01:intron 25.0%
! TTTGTACTTATTCTTATAGC+AGG - Chr8:17741674-17741693 None:intergenic 25.0%
!! AATATTTTGCAGACATAGAT+AGG + Chr8:17742858-17742877 MsG0880043017.01.T01:intron 25.0%
!! CTATATATCAACTTTTCTGT+TGG - Chr8:17742595-17742614 None:intergenic 25.0%
!! GAAATTTGGAATAGTTAGTT+TGG - Chr8:17741979-17741998 None:intergenic 25.0%
!! GAACAAGCATTTCAATTTTA+GGG - Chr8:17742682-17742701 None:intergenic 25.0%
!! TCTGATCATTGTTATTCTAA+TGG + Chr8:17745347-17745366 MsG0880043017.01.T01:CDS 25.0%
!! TGAACAAGCATTTCAATTTT+AGG - Chr8:17742683-17742702 None:intergenic 25.0%
!! TGGACATTTTTACATACTTT+TGG - Chr8:17745159-17745178 None:intergenic 25.0%
!! TTATTTGTAGTTCCATTTTC+TGG + Chr8:17745250-17745269 MsG0880043017.01.T01:intron 25.0%
!!! AAAAAAACTACTTTCTGGTT+AGG - Chr8:17743887-17743906 None:intergenic 25.0%
!!! AAAAAACTACTTTCTGGTTA+GGG - Chr8:17743886-17743905 None:intergenic 25.0%
!!! GAAAAGTTGATATATAGTAG+CGG + Chr8:17742598-17742617 MsG0880043017.01.T01:intron 25.0%
!!! GATTTATTCCTATTGACTTA+AGG + Chr8:17744098-17744117 MsG0880043017.01.T01:intron 25.0%
!!! TAACCAGAAAGTAGTTTTTT+TGG + Chr8:17743886-17743905 MsG0880043017.01.T01:intron 25.0%
!!! TACAGTAAATAGCTGTTTTA+AGG + Chr8:17742887-17742906 MsG0880043017.01.T01:intron 25.0%
!!! TAGAATTGTTTTGCTATCAT+TGG - Chr8:17743262-17743281 None:intergenic 25.0%
!!! TTTTAAGTTGAAATTCATGC+AGG + Chr8:17745085-17745104 MsG0880043017.01.T01:intron 25.0%
AACGTTGCACTCTTTAAATT+TGG - Chr8:17744258-17744277 None:intergenic 30.0%
AATGGTAAACAAATTGGATG+GGG - Chr8:17741886-17741905 None:intergenic 30.0%
ACATAGAATTCTTCAGAGTA+AGG - Chr8:17743291-17743310 None:intergenic 30.0%
AGAATGGTAAACAAATTGGA+TGG - Chr8:17741888-17741907 None:intergenic 30.0%
AGAGTTACTAAGACAATCAA+TGG - Chr8:17743484-17743503 None:intergenic 30.0%
ATTATACTTCACTAATGGCA+CGG - Chr8:17744451-17744470 None:intergenic 30.0%
CATGTGGGAAATTAATGAAT+AGG - Chr8:17742528-17742547 None:intergenic 30.0%
CGACTAAAAGAAGCAATAAA+AGG - Chr8:17743408-17743427 None:intergenic 30.0%
GAAATAACAAAAGGAAGAGT+TGG - Chr8:17744884-17744903 None:intergenic 30.0%
GAAATTATTTGTGAGCAATG+AGG + Chr8:17744760-17744779 MsG0880043017.01.T01:intron 30.0%
GAATCAATTGTTGTAGCATA+GGG - Chr8:17741760-17741779 None:intergenic 30.0%
GAATGGTAAACAAATTGGAT+GGG - Chr8:17741887-17741906 None:intergenic 30.0%
GAGAAATGTTATTCAGGTAT+TGG - Chr8:17741952-17741971 None:intergenic 30.0%
GAGGATAGGATATATAAGTT+GGG - Chr8:17745197-17745216 None:intergenic 30.0%
GAGTTACTAAGACAATCAAT+GGG - Chr8:17743483-17743502 None:intergenic 30.0%
GATCATCAAAGAAGAAGATT+TGG - Chr8:17742120-17742139 None:intergenic 30.0%
GGAAATGTAATAAAAAAGGG+AGG - Chr8:17745216-17745235 None:intergenic 30.0%
GTTGGAAATAGTATTCACTA+TGG - Chr8:17742577-17742596 None:intergenic 30.0%
TAAGGATTCTATTTGCATGT+TGG + Chr8:17744116-17744135 MsG0880043017.01.T01:intron 30.0%
TGAAAATTGAAGCCAGAAAA+TGG - Chr8:17745265-17745284 None:intergenic 30.0%
TGAATCAATTGTTGTAGCAT+AGG - Chr8:17741761-17741780 None:intergenic 30.0%
TGAGGTTGGAAAAAATAGAA+TGG - Chr8:17741904-17741923 None:intergenic 30.0%
TGCAGATCTTCAATTAACAT+GGG + Chr8:17743635-17743654 MsG0880043017.01.T01:CDS 30.0%
TGTAATAAAAAAGGGAGGAT+AGG - Chr8:17745211-17745230 None:intergenic 30.0%
TGTTGCCACATAAAGAAAAA+GGG - Chr8:17743158-17743177 None:intergenic 30.0%
TTAAACCATTAGCTACATGT+GGG - Chr8:17742543-17742562 None:intergenic 30.0%
TTAATTGAAGATCTGCACTA+AGG - Chr8:17743632-17743651 None:intergenic 30.0%
TTACTTCAGTAATTGAGTCA+GGG - Chr8:17741640-17741659 None:intergenic 30.0%
TTGTTGCCACATAAAGAAAA+AGG - Chr8:17743159-17743178 None:intergenic 30.0%
TTTAAACCATTAGCTACATG+TGG - Chr8:17742544-17742563 None:intergenic 30.0%
TTTACTTCAGTAATTGAGTC+AGG - Chr8:17741641-17741660 None:intergenic 30.0%
TTTCTCATAAGATTCAATGG+TGG - Chr8:17745493-17745512 None:intergenic 30.0%
! CTTTTCATTTTCAATCGAAC+AGG - Chr8:17744846-17744865 None:intergenic 30.0%
! GCATTCTTTTGTATGAAAGT+TGG + Chr8:17742625-17742644 MsG0880043017.01.T01:intron 30.0%
! TTCCTTTGTTATAGCCAAAA+AGG + Chr8:17744922-17744941 MsG0880043017.01.T01:intron 30.0%
! TTTGCATGTTGGCAATTTTT+CGG + Chr8:17744127-17744146 MsG0880043017.01.T01:intron 30.0%
!! ATGTTATTCAGGTATTGGAA+TGG - Chr8:17741947-17741966 None:intergenic 30.0%
!! GTACAATTTAAGTTGAAACC+AGG - Chr8:17743240-17743259 None:intergenic 30.0%
!!! ATTTTCTGGCTTCAATTTTC+AGG + Chr8:17745264-17745283 MsG0880043017.01.T01:intron 30.0%
!!! GATTTGTTTGTTTTGGTAAC+TGG - Chr8:17741726-17741745 None:intergenic 30.0%
AATTTCCCACATGTAGCTAA+TGG + Chr8:17742535-17742554 MsG0880043017.01.T01:intron 35.0%
ACGTAGTTACACATACTACT+TGG - Chr8:17742805-17742824 None:intergenic 35.0%
AGAAAAAGGGCAATCGTTTA+TGG - Chr8:17743145-17743164 None:intergenic 35.0%
AGAACCACAATAACAGATGA+AGG - Chr8:17741848-17741867 None:intergenic 35.0%
AGAATAACAATGATCAGAGC+TGG - Chr8:17745345-17745364 None:intergenic 35.0%
AGATCCTTCATCTGTTATTG+TGG + Chr8:17741841-17741860 MsG0880043017.01.T01:intron 35.0%
ATATTGCTCACCTAACTGAA+AGG - Chr8:17743202-17743221 None:intergenic 35.0%
ATCAAGTTCTTGATCTACTC+CGG - Chr8:17744575-17744594 None:intergenic 35.0%
ATCAGTTGACTAAACGTGTT+TGG + Chr8:17743930-17743949 MsG0880043017.01.T01:intron 35.0%
ATCTAAACCTGCAATTACTG+TGG - Chr8:17745466-17745485 None:intergenic 35.0%
GAATTCTGGCAATGTCATAA+AGG + Chr8:17742778-17742797 MsG0880043017.01.T01:intron 35.0%
GAATTGACAAAGCTAACTGA+AGG - Chr8:17743528-17743547 None:intergenic 35.0%
GCTGTTCATCTCAGAATATA+GGG + Chr8:17743445-17743464 MsG0880043017.01.T01:CDS 35.0%
GGAGGATAGGATATATAAGT+TGG - Chr8:17745198-17745217 None:intergenic 35.0%
GGGAAAGAGAAATGTTATTC+AGG - Chr8:17741958-17741977 None:intergenic 35.0%
GTGCAGATCTTCAATTAACA+TGG + Chr8:17743634-17743653 MsG0880043017.01.T01:CDS 35.0%
GTGTGCTACAATGATAGAAT+AGG + Chr8:17745378-17745397 MsG0880043017.01.T01:CDS 35.0%
TATTGCTCACCTAACTGAAA+GGG - Chr8:17743201-17743220 None:intergenic 35.0%
TGGAAACAATGTTTGCATTC+AGG - Chr8:17745615-17745634 None:intergenic 35.0%
TTACTAGAGGCAACATTAAG+AGG - Chr8:17745711-17745730 None:intergenic 35.0%
TTCGGTAAACATTTGCAAGT+TGG + Chr8:17744145-17744164 MsG0880043017.01.T01:intron 35.0%
TTTGCAAGTCTGAGAAGTAA+TGG + Chr8:17743074-17743093 MsG0880043017.01.T01:intron 35.0%
! AGATTTTCTTGAAACCGTTC+TGG - Chr8:17743600-17743619 None:intergenic 35.0%
! AGTTGACTTTGCATGAATTC+TGG + Chr8:17742764-17742783 MsG0880043017.01.T01:intron 35.0%
! GATTGCCCTTTTTCTTTATG+TGG + Chr8:17743150-17743169 MsG0880043017.01.T01:CDS 35.0%
! GTGACTTATAATTTGAGACC+CGG + Chr8:17744553-17744572 MsG0880043017.01.T01:intron 35.0%
! TAGGATATATAAGTTGGGAG+TGG - Chr8:17745192-17745211 None:intergenic 35.0%
! TTATTGTGGTTCTGCAAAGT+CGG + Chr8:17741855-17741874 MsG0880043017.01.T01:intron 35.0%
!! AGAAGTAATGGACATCTTGA+AGG + Chr8:17743086-17743105 MsG0880043017.01.T01:intron 35.0%
!!! TGCCTTTTTGGCTATAACAA+AGG - Chr8:17744927-17744946 None:intergenic 35.0%
AAACCAGGATAGCCACAATA+AGG - Chr8:17743225-17743244 None:intergenic 40.0%
ACAAATCTGATGACAGCAAG+AGG + Chr8:17741689-17741708 MsG0880043017.01.T01:intron 40.0%
ACGTTTGGGAAGACAATCAT+CGG - Chr8:17743358-17743377 None:intergenic 40.0%
ACTGAAAGGGGAAACGAATT+AGG - Chr8:17743188-17743207 None:intergenic 40.0%
AGTTGGACATCAATTGAGGT+TGG - Chr8:17741918-17741937 None:intergenic 40.0%
ATAGGACATCTTTACCTGGT+TGG - Chr8:17743752-17743771 None:intergenic 40.0%
ATTCGTTTCCCCTTTCAGTT+AGG + Chr8:17743189-17743208 MsG0880043017.01.T01:CDS 40.0%
ATTGAGGCTTAGAAGACGTT+TGG - Chr8:17743373-17743392 None:intergenic 40.0%
ATTGCTCACCTAACTGAAAG+GGG - Chr8:17743200-17743219 None:intergenic 40.0%
CATGTTTATCTCAATCGCTG+AGG - Chr8:17744058-17744077 None:intergenic 40.0%
CTCAAACCCATCTTCAAGAA+GGG + Chr8:17742409-17742428 MsG0880043017.01.T01:CDS 40.0%
CTCAGCGATTGAGATAAACA+TGG + Chr8:17744056-17744075 MsG0880043017.01.T01:intron 40.0%
CTTTACTGTTGTATTCTGCC+AGG - Chr8:17745575-17745594 None:intergenic 40.0%
GAACATAGGACATCTTTACC+TGG - Chr8:17743756-17743775 None:intergenic 40.0%
GACAAAGCTAACTGAAGGAA+TGG - Chr8:17743523-17743542 None:intergenic 40.0%
GATTCACAATAACTGCAGTC+AGG - Chr8:17743666-17743685 None:intergenic 40.0%
GGCTGTTCATCTCAGAATAT+AGG + Chr8:17743444-17743463 MsG0880043017.01.T01:CDS 40.0%
GGCTTACGATATGTACGAAT+GGG - Chr8:17744237-17744256 None:intergenic 40.0%
GGTGAGCAATATCCTTATTG+TGG + Chr8:17743210-17743229 MsG0880043017.01.T01:CDS 40.0%
GTCTTGCAATTGGAACTGAA+AGG - Chr8:17743578-17743597 None:intergenic 40.0%
TATCCTTATTGTGGCTATCC+TGG + Chr8:17743219-17743238 MsG0880043017.01.T01:CDS 40.0%
TATTGGAATGGAAGCGAAGT+TGG - Chr8:17741935-17741954 None:intergenic 40.0%
TCAAGTTCTTGATCTACTCC+GGG - Chr8:17744574-17744593 None:intergenic 40.0%
TCCTTCTAACCTAAGCATGT+AGG - Chr8:17744004-17744023 None:intergenic 40.0%
TCTCAAACCCATCTTCAAGA+AGG + Chr8:17742408-17742427 MsG0880043017.01.T01:CDS 40.0%
TGGCTTACGATATGTACGAA+TGG - Chr8:17744238-17744257 None:intergenic 40.0%
TGTTTCTCTGATTACCAACC+AGG + Chr8:17743735-17743754 MsG0880043017.01.T01:CDS 40.0%
TTCCAATTGCAAGACCAGAA+CGG + Chr8:17743583-17743602 MsG0880043017.01.T01:CDS 40.0%
TTGAGGCTTAGAAGACGTTT+GGG - Chr8:17743372-17743391 None:intergenic 40.0%
! AGCTTTGTCAATTCTCTGTC+TGG + Chr8:17743534-17743553 MsG0880043017.01.T01:CDS 40.0%
! ATGTGAAGTACCAAGCTATG+AGG + Chr8:17742327-17742346 MsG0880043017.01.T01:CDS 40.0%
! GATTTGGGACTGTAGTAGAT+TGG - Chr8:17742104-17742123 None:intergenic 40.0%
! TGTGAAGTACCAAGCTATGA+GGG + Chr8:17742328-17742347 MsG0880043017.01.T01:CDS 40.0%
ACATTAAGAGGAGAAGGAGC+AGG - Chr8:17745699-17745718 None:intergenic 45.0%
ACTCATCGATGCAATCAGCA+TGG - Chr8:17745635-17745654 None:intergenic 45.0%
AGTCGTGACTACACCTTCTT+AGG + Chr8:17743423-17743442 MsG0880043017.01.T01:CDS 45.0%
ATCATAGCACTATGCGTCAC+TGG + Chr8:17745318-17745337 MsG0880043017.01.T01:CDS 45.0%
ATCCAACAACTTCCGTCGTT+TGG - Chr8:17745549-17745568 None:intergenic 45.0%
ATGGAAACAACTTCTCCACC+AGG - Chr8:17742359-17742378 None:intergenic 45.0%
CAGGAGAGTTACGACAAACA+GGG - Chr8:17745680-17745699 None:intergenic 45.0%
CGTTTGGGAAGACAATCATC+GGG - Chr8:17743357-17743376 None:intergenic 45.0%
CTCCAGTGTGTGTAACAAGA+AGG + Chr8:17741815-17741834 MsG0880043017.01.T01:intron 45.0%
CTGAGATGAACAGCCTAAGA+AGG - Chr8:17743439-17743458 None:intergenic 45.0%
CTTCTTGTTACACACACTGG+AGG - Chr8:17741817-17741836 None:intergenic 45.0%
GAATCGCATCAGCTAATGTG+TGG + Chr8:17743681-17743700 MsG0880043017.01.T01:CDS 45.0%
GAGGCAACATTAAGAGGAGA+AGG - Chr8:17745705-17745724 None:intergenic 45.0%
GCCTACATGCTTAGGTTAGA+AGG + Chr8:17744000-17744019 MsG0880043017.01.T01:intron 45.0%
GCGAAGTTGGACATCAATTG+AGG - Chr8:17741922-17741941 None:intergenic 45.0%
GCTTACCAGACTAACACTCT+CGG + Chr8:17744312-17744331 MsG0880043017.01.T01:intron 45.0%
GTCCTTCTTGTTACACACAC+TGG - Chr8:17741820-17741839 None:intergenic 45.0%
GTCTGGTAAGCAATTGTCTC+TGG - Chr8:17744303-17744322 None:intergenic 45.0%
TTACACACACTGGAGGCAAA+GGG - Chr8:17741810-17741829 None:intergenic 45.0%
TTGGGACTGTAGTAGATTGG+TGG - Chr8:17742101-17742120 None:intergenic 45.0%
! ACTAGTTGGCCTACATGCTT+AGG + Chr8:17743992-17744011 MsG0880043017.01.T01:intron 45.0%
! ATGCTGATTGCATCGATGAG+TGG + Chr8:17745634-17745653 MsG0880043017.01.T01:CDS 45.0%
!! AACCGTTCTGGTCTTGCAAT+TGG - Chr8:17743588-17743607 None:intergenic 45.0%
!! ATTACTGTGGCTTCAGGTTG+CGG - Chr8:17745453-17745472 None:intergenic 45.0%
!! TGATACCGAGAGTGTTAGTC+TGG - Chr8:17744320-17744339 None:intergenic 45.0%
!! TTACCAGAAGTGCTGCTTCT+CGG + Chr8:17745406-17745425 MsG0880043017.01.T01:CDS 45.0%
!!! TTTTCAGGTACATCGCGACA+AGG + Chr8:17745279-17745298 MsG0880043017.01.T01:intron 45.0%
!! AAAATAATTAAAATATTCTA+GGG + Chr8:17744625-17744644 MsG0880043017.01.T01:intron 5.0%
!! TAAAATAATTAAAATATTCT+AGG + Chr8:17744624-17744643 MsG0880043017.01.T01:intron 5.0%
!! TCTAATTTAAAAATAAAATA+TGG + Chr8:17742999-17743018 MsG0880043017.01.T01:intron 5.0%
AACCCATCTTCAAGAAGGGC+CGG + Chr8:17742413-17742432 MsG0880043017.01.T01:CDS 50.0%
AAGTACCAAGCTATGAGGGC+AGG + Chr8:17742332-17742351 MsG0880043017.01.T01:CDS 50.0%
AGTGATGAACTACCCAACCC+CGG - Chr8:17742435-17742454 None:intergenic 50.0%
CAGCTGCTGAGAGATTCTGA+TGG - Chr8:17742378-17742397 None:intergenic 50.0%
CCTGAAGCCACAGTAATTGC+AGG + Chr8:17745456-17745475 MsG0880043017.01.T01:CDS 50.0%
CCTGCAATTACTGTGGCTTC+AGG - Chr8:17745459-17745478 None:intergenic 50.0%
CGGAAGTTGTTGGATATGCC+TGG + Chr8:17745554-17745573 MsG0880043017.01.T01:CDS 50.0%
GACCAAACGACGGAAGTTGT+TGG + Chr8:17745544-17745563 MsG0880043017.01.T01:CDS 50.0%
GCAGGAGAGTTACGACAAAC+AGG - Chr8:17745681-17745700 None:intergenic 50.0%
GTTACACACACTGGAGGCAA+AGG - Chr8:17741811-17741830 None:intergenic 50.0%
TCGTTTATGGCGTATGCGAC+AGG - Chr8:17743132-17743151 None:intergenic 50.0%
ACCCATCTTCAAGAAGGGCC+GGG + Chr8:17742414-17742433 MsG0880043017.01.T01:CDS 55.0%
CAACTTCCGTCGTTTGGTCC+AGG - Chr8:17745543-17745562 None:intergenic 55.0%
CGTGTTCCTGGACCAAACGA+CGG + Chr8:17745534-17745553 MsG0880043017.01.T01:CDS 55.0%
TGACCGAGAAGCAGCACTTC+TGG - Chr8:17745412-17745431 None:intergenic 55.0%
TTGGGAGTGGCAGCAACTCA+TGG - Chr8:17745179-17745198 None:intergenic 55.0%
ACCCCGGCCCTTCTTGAAGA+TGG - Chr8:17742419-17742438 None:intergenic 60.0%
CAAGCTATGAGGGCAGGACC+TGG + Chr8:17742338-17742357 MsG0880043017.01.T01:CDS 60.0%
CAGGTCCTGCCCTCATAGCT+TGG - Chr8:17742340-17742359 None:intergenic 60.0%
CCCATCTTCAAGAAGGGCCG+GGG + Chr8:17742415-17742434 MsG0880043017.01.T01:CDS 60.0%
CCCCGGCCCTTCTTGAAGAT+GGG - Chr8:17742418-17742437 None:intergenic 60.0%
CTTCAAGAAGGGCCGGGGTT+GGG + Chr8:17742420-17742439 MsG0880043017.01.T01:intron 60.0%
GGTTGCGGTGATATTGCCGC+TGG - Chr8:17745438-17745457 None:intergenic 60.0%
TCTTCAAGAAGGGCCGGGGT+TGG + Chr8:17742419-17742438 MsG0880043017.01.T01:intron 60.0%
TGCTTCTCGGTCAGCACCAG+CGG + Chr8:17745419-17745438 MsG0880043017.01.T01:CDS 60.0%
GCTATGAGGGCAGGACCTGG+TGG + Chr8:17742341-17742360 MsG0880043017.01.T01:CDS 65.0%
GGGGAGAGTCGACGTGTTCC+TGG + Chr8:17745522-17745541 MsG0880043017.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 17741633 17745737 17741633 ID=MsG0880043017.01;Name=MsG0880043017.01
Chr8 mRNA 17741633 17745737 17741633 ID=MsG0880043017.01.T01;Parent=MsG0880043017.01;Name=MsG0880043017.01.T01;_AED=0.33;_eAED=0.38;_QI=0|0|0|0.75|0.33|0.25|4|0|420
Chr8 exon 17741633 17741655 17741633 ID=MsG0880043017.01.T01:exon:3449;Parent=MsG0880043017.01.T01
Chr8 exon 17742318 17742436 17742318 ID=MsG0880043017.01.T01:exon:3450;Parent=MsG0880043017.01.T01
Chr8 exon 17743088 17743756 17743088 ID=MsG0880043017.01.T01:exon:3451;Parent=MsG0880043017.01.T01
Chr8 exon 17745286 17745737 17745286 ID=MsG0880043017.01.T01:exon:3452;Parent=MsG0880043017.01.T01
Chr8 CDS 17741633 17741655 17741633 ID=MsG0880043017.01.T01:cds;Parent=MsG0880043017.01.T01
Chr8 CDS 17742318 17742436 17742318 ID=MsG0880043017.01.T01:cds;Parent=MsG0880043017.01.T01
Chr8 CDS 17743088 17743756 17743088 ID=MsG0880043017.01.T01:cds;Parent=MsG0880043017.01.T01
Chr8 CDS 17745286 17745737 17745286 ID=MsG0880043017.01.T01:cds;Parent=MsG0880043017.01.T01
Gene Sequence

>MsG0880043017.01.T01

ATGTCCCTGACTCAATTACTGAACAGGTCTTCATGTGAAGTACCAAGCTATGAGGGCAGGACCTGGTGGAGAAGTTGTTTCCATCAGAATCTCTCAGCAGCTGCTGTGACTCATCTCAAACCCATCTTCAAGAAGGGCCGGGAAGTAATGGACATCTTGAAGGTCCTTTTTTACTTAATCTTTCCTGTCGCATACGCCATAAACGATTGCCCTTTTTCTTTATGTGGCAACAATAGTTTCCTAATTCGTTTCCCCTTTCAGTTAGGTGAGCAATATCCTTATTGTGGCTATCCTGGTTTCAACTTAAATTGTACCAATGATAGCAAAACAATTCTAAAACTTCCTTACTCTGAAGAATTCTATGTACGCAGCATAAACTATCTCACGCAACAGATACTACTCTATGATCCCGATGATTGTCTTCCCAAACGTCTTCTAAGCCTCAATTTTTCAAATTCTCCTTTTATTGCTTCTTTTAGTCGTGACTACACCTTCTTAGGCTGTTCATCTCAGAATATAGGGTCACAATTCATTCCCATTGATTGTCTTAGTAACTCTACATATTTTGTATCAGCCATTCCTTCAGTTAGCTTTGTCAATTCTCTGTCTGGTTGCTCTGTTATAAAAAACCTTTCAGTTCCAATTGCAAGACCAGAACGGTTTCAAGAAAATCTAAGAGATGACCTTAGTGCAGATCTTCAATTAACATGGGATAAACCTGACTGCAGTTATTGTGAATCGCATCAGCTAATGTGTGGATTTGAAAGCATTAACAGCAATCAAGTTGTCTGTTTCTCTGATTACCAACCAGGTACATCGCGACAAGGACTTAAAATTTTCAGAATCATAGCACTATGCGTCACTGGACCAGCTCTGATCATTGTTATTCTAATGGCAAGTTGTGTGTGCTACAATGATAGAATAGGCAACATTACCAGAAGTGCTGCTTCTCGGTCAGCACCAGCGGCAATATCACCGCAACCTGAAGCCACAGTAATTGCAGGTTTAGATGAATCCACCATTGAATCTTATGAGAAAGTAATTCTTGGGGAGAGTCGACGTGTTCCTGGACCAAACGACGGAAGTTGTTGGATATGCCTGGCAGAATACAACAGTAAAGAGACAGTAAGATGCATTCCTGAATGCAAACATTGTTTCCATGCTGATTGCATCGATGAGTGGCTTCGTATGAATGTTACATGCCCTGTTTGTCGTAACTCTCCTGCTCCTTCTCCTCTTAATGTTGCCTCTAGTAATGCTTGA

Protein sequence

>MsG0880043017.01.T01

MSLTQLLNRSSCEVPSYEGRTWWRSCFHQNLSAAAVTHLKPIFKKGREVMDILKVLFYLIFPVAYAINDCPFSLCGNNSFLIRFPFQLGEQYPYCGYPGFNLNCTNDSKTILKLPYSEEFYVRSINYLTQQILLYDPDDCLPKRLLSLNFSNSPFIASFSRDYTFLGCSSQNIGSQFIPIDCLSNSTYFVSAIPSVSFVNSLSGCSVIKNLSVPIARPERFQENLRDDLSADLQLTWDKPDCSYCESHQLMCGFESINSNQVVCFSDYQPGTSRQGLKIFRIIALCVTGPALIIVILMASCVCYNDRIGNITRSAASRSAPAAISPQPEATVIAGLDESTIESYEKVILGESRRVPGPNDGSCWICLAEYNSKETVRCIPECKHCFHADCIDEWLRMNVTCPVCRNSPAPSPLNVASSNA*