AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080047967.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047967.01.T01 MTR_1g030480 96.411 418 5 1 1 418 1 408 0.0 832
MsG0080047967.01.T01 MTR_1g030480 100.000 57 0 0 416 472 475 531 1.43e-30 124
MsG0080047967.01.T01 MTR_3g105820 28.879 232 142 9 220 432 99 326 1.20e-22 101
MsG0080047967.01.T01 MTR_4g057200 26.271 236 147 11 220 429 93 327 3.03e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080047967.01.T01 AT1G44446 71.631 423 103 3 3 418 4 416 0.0 608
MsG0080047967.01.T01 AT1G44446 75.472 53 13 0 416 468 483 535 2.59e-20 94.4
MsG0080047967.01.T01 AT1G44446 71.631 423 103 3 3 418 4 416 0.0 608
MsG0080047967.01.T01 AT1G44446 70.483 393 99 3 3 388 4 386 0.0 550
MsG0080047967.01.T01 AT1G44446 76.433 314 74 0 105 418 1 314 7.39e-177 503
MsG0080047967.01.T01 AT1G44446 75.472 53 13 0 416 468 381 433 1.59e-20 94.4
MsG0080047967.01.T01 AT2G24820 29.762 168 100 5 223 377 88 250 4.77e-21 96.3
MsG0080047967.01.T01 AT3G44880 27.311 238 142 11 220 429 85 319 7.45e-13 71.2

Find 144 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACAACAATCCCCTTTA+AGG 0.138946 contig153end:+2151 None:intergenic
TGCTTTCTCTGCTGACTTAA+AGG 0.172252 contig153end:-4834 MsG0080047967.01.T01:CDS
ATCCTAATTTAAAGAATTTC+TGG 0.191900 contig153end:-4865 MsG0080047967.01.T01:CDS
AGGAACCATGGGTTATCTTT+AGG 0.213560 contig153end:-4633 MsG0080047967.01.T01:CDS
CAGGGTTTGAAAGGTAAATT+TGG 0.219218 contig153end:-5994 MsG0080047967.01.T01:CDS
ACAGTGTTAAATCCAATTTA+TGG 0.235520 contig153end:-2209 MsG0080047967.01.T01:three_prime_UTR
TACCAGAAATTCTTTAAATT+AGG 0.270588 contig153end:+4863 None:intergenic
TGGTATAACCACACCCTTAA+AGG 0.278106 contig153end:-2165 MsG0080047967.01.T01:three_prime_UTR
GGTTGAACACGGATTACTTT+TGG 0.283837 contig153end:-4026 MsG0080047967.01.T01:CDS
CATCTGGTCTGCAAGGATAT+TGG 0.286825 contig153end:-3371 MsG0080047967.01.T01:CDS
CTTTATTCATTCTCTCTTGT+TGG 0.291005 contig153end:+2581 None:intergenic
CCTTCTTTACTACCTCCTTC+TGG 0.291205 contig153end:-4218 MsG0080047967.01.T01:CDS
CTTAGTGGCGCTTTAGATCT+TGG 0.291618 contig153end:+5904 None:intergenic
AAGATGGTGAAACCATAAAT+TGG 0.296753 contig153end:+2197 None:intergenic
GGAACCATGGGTTATCTTTA+GGG 0.299759 contig153end:-4632 MsG0080047967.01.T01:CDS
TATGGTTTCACCATCTTAGA+TGG 0.312209 contig153end:-2191 MsG0080047967.01.T01:three_prime_UTR
GTCGATTGGCACCATGAAAA+AGG 0.314224 contig153end:-5238 MsG0080047967.01.T01:CDS
AATGTCGAAGTATGAGTAAA+AGG 0.321362 contig153end:+3977 None:intergenic
AAACTCTTGCTTCAGATATA+TGG 0.329301 contig153end:+5074 None:intergenic
ATCTGGTCTGCAAGGATATT+GGG 0.329604 contig153end:-3370 MsG0080047967.01.T01:CDS
AGCAAGAGTTTCTACTGCTT+TGG 0.334343 contig153end:-5062 MsG0080047967.01.T01:CDS
ACATTTAGCATTCGAGTAGA+TGG 0.343874 contig153end:+4323 None:intergenic
AACCTTGCATTAGAACTTCA+TGG 0.356961 contig153end:-2353 MsG0080047967.01.T01:three_prime_UTR
AAAGGATCTAGCTGGGTTGC+AGG 0.360380 contig153end:-5220 MsG0080047967.01.T01:CDS
ACAGATTGTCATGGAACTTC+CGG 0.364114 contig153end:-4047 MsG0080047967.01.T01:intron
ACACTGTACACAAATTTAAG+AGG 0.365108 contig153end:+2225 None:intergenic
ACTAAGTAAAGGAAAAGTTT+TGG 0.365161 contig153end:-5887 MsG0080047967.01.T01:CDS
TTTGGAGTGTTTGCTGTGTT+TGG 0.368010 contig153end:-5976 MsG0080047967.01.T01:CDS
AAGAAAAGCTTAAATGTATC+AGG 0.384915 contig153end:-4905 MsG0080047967.01.T01:CDS
ACTCGCTTACATGGAAGAAT+TGG 0.386034 contig153end:-5035 MsG0080047967.01.T01:CDS
CATACAACAATCCCCTTTAA+GGG 0.387303 contig153end:+2152 None:intergenic
ATCATGCCTAGCTACTTCTA+TGG 0.388459 contig153end:+5852 None:intergenic
AAGAAGGGATGATCTGGATT+TGG 0.390925 contig153end:-4271 MsG0080047967.01.T01:CDS
CCAAGCTTGTCATAGGTAAC+TGG 0.395981 contig153end:+2538 None:intergenic
GGATCCCTATCCGATTGATA+TGG 0.397893 contig153end:-3349 MsG0080047967.01.T01:CDS
GGTATAACCACACCCTTAAA+GGG 0.399225 contig153end:-2164 MsG0080047967.01.T01:three_prime_UTR
ACGCTTCTTAAGATCCAATA+AGG 0.399633 contig153end:-2407 MsG0080047967.01.T01:three_prime_UTR
CTTCCAAGCTTGACACCAAA+AGG 0.403732 contig153end:-6985 MsG0080047967.01.T01:CDS
TGAATAAAGGTGCAAATGTA+TGG 0.404916 contig153end:-2567 MsG0080047967.01.T01:CDS
GGAGTTTCGACCACCTTGTA+TGG 0.406336 contig153end:-3328 MsG0080047967.01.T01:intron
TTGAGAAAGAAGGGATGATC+TGG 0.411706 contig153end:-4277 MsG0080047967.01.T01:CDS
TTGGAGGGATGCATTGGAAA+AGG 0.412803 contig153end:-2500 MsG0080047967.01.T01:CDS
CTAAGGGATGGAGTGTTCCT+AGG 0.413929 contig153end:-3952 MsG0080047967.01.T01:intron
CCTTACTCCAAGCTTGTCAT+AGG 0.414297 contig153end:+2531 None:intergenic
AGCAGTAGCTATGGCATTCA+TGG 0.421129 contig153end:+7039 None:intergenic
TTGGAGTAAGGTATAGGCTT+TGG 0.424370 contig153end:-2519 MsG0080047967.01.T01:CDS
AAGAAAGAGAGGTACCCTTT+TGG 0.427629 contig153end:+6970 None:intergenic
TTGGAAGTTCTACAAAAGAT+AGG 0.437166 contig153end:+7001 None:intergenic
TCATATCAACACAACATTCC+CGG 0.445027 contig153end:+2305 None:intergenic
TTAATTATTGTGTGTGTTGA+AGG 0.445378 contig153end:+2462 None:intergenic
ACAAGCTTGGAGTAAGGTAT+AGG 0.446291 contig153end:-2525 MsG0080047967.01.T01:CDS
AAAAGTAATCCGTGTTCAAC+CGG 0.447132 contig153end:+4028 None:intergenic
AAGTCAGCAGAGAAAGCAAC+AGG 0.447177 contig153end:+4839 None:intergenic
TTAGGATGGTATGACTGAAC+TGG 0.452128 contig153end:+4881 None:intergenic
GGGTGCGATATTTGATGTAC+AGG 0.456724 contig153end:-5929 MsG0080047967.01.T01:CDS
AGGGGTAAAGATGGCAAACC+TGG 0.457895 contig153end:-4613 MsG0080047967.01.T01:CDS
CCAGAAGGAGGTAGTAAAGA+AGG 0.468373 contig153end:+4218 None:intergenic
CAACAAGAGAGAATGAATAA+AGG 0.472000 contig153end:-2580 MsG0080047967.01.T01:CDS
ATGTCGAAGTATGAGTAAAA+GGG 0.472157 contig153end:+3978 None:intergenic
ATGATATTGAGTACTTAGAT+TGG 0.472398 contig153end:-5834 MsG0080047967.01.T01:CDS
CATCATGCTCCTCCATGAAA+AGG 0.476387 contig153end:-5788 MsG0080047967.01.T01:intron
TAAAGCAGAAGCAGTAGCTA+TGG 0.478061 contig153end:+7030 None:intergenic
TCATCTTGGCTCTGTAAATG+AGG 0.484207 contig153end:-4551 MsG0080047967.01.T01:CDS
ATCCCTTCTTTCTCAAAACA+TGG 0.488856 contig153end:+4284 None:intergenic
GGTTCCTCAAAACATTCCAT+TGG 0.490124 contig153end:+4649 None:intergenic
AACAATCCCCTTTAAGGGTG+TGG 0.490466 contig153end:+2157 None:intergenic
TAGGCTTTGGAGGGATGCAT+TGG 0.491835 contig153end:-2506 MsG0080047967.01.T01:CDS
GAGTAAGGTATAGGCTTTGG+AGG 0.496119 contig153end:-2516 MsG0080047967.01.T01:CDS
GTTATCTTTAGGGGTAAAGA+TGG 0.497489 contig153end:-4622 MsG0080047967.01.T01:CDS
GTTCCTCAAAACATTCCATT+GGG 0.498608 contig153end:+4650 None:intergenic
AGAGCATGTCCCCTTCATCT+TGG 0.499561 contig153end:-4565 MsG0080047967.01.T01:CDS
TTTGGATAAACTCGCTTACA+TGG 0.502971 contig153end:-5044 MsG0080047967.01.T01:CDS
TGGAGGGATGCATTGGAAAA+GGG 0.507380 contig153end:-2499 MsG0080047967.01.T01:CDS
TTCACCATCTTAGATGGTGG+TGG 0.507584 contig153end:-2185 MsG0080047967.01.T01:three_prime_UTR
AGAAATTCTTTAAATTAGGA+TGG 0.513147 contig153end:+4867 None:intergenic
CTATGAAAGTGATGAGAAGA+AGG 0.513839 contig153end:+7062 None:intergenic
ACAGATTTATCAGAAGTACT+TGG 0.516953 contig153end:+4953 None:intergenic
GATTGTAACTCAAACCAGTC+AGG 0.519297 contig153end:+2097 None:intergenic
AAACTCCATATCAATCGGAT+AGG 0.523237 contig153end:+3344 None:intergenic
TCATACTTCGACATTTGCTA+AGG 0.523457 contig153end:-3969 MsG0080047967.01.T01:CDS
ATCAACCTAGTGAAGCTACC+CGG 0.523575 contig153end:-2324 MsG0080047967.01.T01:three_prime_UTR
CGATGAATACTAACCGTGGT+AGG 0.526765 contig153end:+4513 None:intergenic
GGTCGAAACTCCATATCAAT+CGG 0.530169 contig153end:+3339 None:intergenic
GTTGATTAAGAATTCCTGAC+TGG 0.530223 contig153end:-2111 MsG0080047967.01.T01:three_prime_UTR
AAGAAGGAAGTGATGCTGCT+GGG 0.530413 contig153end:+4234 None:intergenic
TTTCACAAAACAGATTGTCA+TGG 0.531019 contig153end:-4056 MsG0080047967.01.T01:intron
TCTAAAGCGCCACTAAGTAA+AGG 0.531979 contig153end:-5898 MsG0080047967.01.T01:CDS
CATTTACAGAGCCAAGATGA+AGG 0.535455 contig153end:+4554 None:intergenic
CATTCCCGGGTAGCTTCACT+AGG 0.537575 contig153end:+2319 None:intergenic
AGTACTTAGATTGGCGAGCT+CGG 0.538321 contig153end:-5825 MsG0080047967.01.T01:CDS
AAAGAAGGAAGTGATGCTGC+TGG 0.539768 contig153end:+4233 None:intergenic
CCTATGACAAGCTTGGAGTA+AGG 0.541938 contig153end:-2531 MsG0080047967.01.T01:CDS
GGTTTCACCATCTTAGATGG+TGG 0.543297 contig153end:-2188 MsG0080047967.01.T01:three_prime_UTR
TGGAAGAATTGGTAAATGAC+AGG 0.544909 contig153end:-5024 MsG0080047967.01.T01:CDS
GGGATGATCTGGATTTGGCC+TGG 0.548326 contig153end:-4266 MsG0080047967.01.T01:CDS
CATACTTCGACATTTGCTAA+GGG 0.548563 contig153end:-3968 MsG0080047967.01.T01:CDS
CATATCAACACAACATTCCC+GGG 0.548627 contig153end:+2306 None:intergenic
AACTCCATATCAATCGGATA+GGG 0.548896 contig153end:+3345 None:intergenic
CTTCGACATTTGCTAAGGGA+TGG 0.553640 contig153end:-3964 MsG0080047967.01.T01:CDS
ATCAGAAGTACTTGGAGAAG+AGG 0.554772 contig153end:+4961 None:intergenic
CTGTACATACTGAAAGAAGA+AGG 0.555644 contig153end:-4934 MsG0080047967.01.T01:CDS
CCAGTTACCTATGACAAGCT+TGG 0.556416 contig153end:-2538 MsG0080047967.01.T01:CDS
GAGGATCTACGGCTAGTAGT+TGG 0.556957 contig153end:-2604 MsG0080047967.01.T01:CDS
GCTCGTGAATTCAAGTCGAT+TGG 0.558329 contig153end:-5252 MsG0080047967.01.T01:CDS
ATTAGCAGAAGCACACAGAC+AGG 0.563331 contig153end:-5193 MsG0080047967.01.T01:intron
TGACTTAAAGGATGATTCCA+TGG 0.565498 contig153end:-4822 MsG0080047967.01.T01:intron
TATACCACCACCATCTAAGA+TGG 0.570781 contig153end:+2181 None:intergenic
ATTTACAGAGCCAAGATGAA+GGG 0.571447 contig153end:+4555 None:intergenic
AGAAGGAAGTGATGCTGCTG+GGG 0.573018 contig153end:+4235 None:intergenic
GGCTGGGAATATACGACAGA+CGG 0.577816 contig153end:-4362 MsG0080047967.01.T01:CDS
TTCCAAGCTTGACACCAAAA+GGG 0.583881 contig153end:-6984 MsG0080047967.01.T01:intron
AGCAGACAAGAAAAGTGCGT+GGG 0.586221 contig153end:-5950 MsG0080047967.01.T01:CDS
TTCAAGCCATAGAAGTAGCT+AGG 0.586372 contig153end:-5858 MsG0080047967.01.T01:CDS
TATCCTTGCAGACCAGATGC+CGG 0.588286 contig153end:+3375 None:intergenic
ACTTATTAAATACCTCGGCA+TGG 0.591232 contig153end:+4186 None:intergenic
TTCCCTATTCCAGATCCCAA+TGG 0.592203 contig153end:-4665 MsG0080047967.01.T01:intron
CATCTTGGCTCTGTAAATGA+GGG 0.592271 contig153end:-4550 MsG0080047967.01.T01:CDS
AGCCATGAAGTTCTAATGCA+AGG 0.595362 contig153end:+2351 None:intergenic
TCAACCTAGTGAAGCTACCC+GGG 0.600321 contig153end:-2323 MsG0080047967.01.T01:three_prime_UTR
GGGCGTGCGCAAGATCCAAA+AGG 0.603628 contig153end:+3999 None:intergenic
GACTTGAATTCACGAGCTAG+AGG 0.604846 contig153end:+5258 None:intergenic
GATGAATACTAACCGTGGTA+GGG 0.606402 contig153end:+4514 None:intergenic
ATGGAACTTCCGGTTGAACA+CGG 0.610594 contig153end:-4037 MsG0080047967.01.T01:CDS
ACACCGGCATCTGGTCTGCA+AGG 0.613320 contig153end:-3378 MsG0080047967.01.T01:CDS
TAATTATTGTGTGTGTTGAA+GGG 0.617559 contig153end:+2463 None:intergenic
TGTTCCTTTGTAGAATGACA+AGG 0.617585 contig153end:-2279 MsG0080047967.01.T01:three_prime_UTR
TTACCCCTAAAGATAACCCA+TGG 0.624924 contig153end:+4628 None:intergenic
TGTCGAAGTATGAGTAAAAG+GGG 0.625361 contig153end:+3979 None:intergenic
ACTTGGAGAAGAGGACGTCT+CGG 0.627193 contig153end:+4970 None:intergenic
TTTACAGAGCCAAGATGAAG+GGG 0.628748 contig153end:+4556 None:intergenic
GAACCATGGGTTATCTTTAG+GGG 0.632156 contig153end:-4631 MsG0080047967.01.T01:CDS
ATGGTTGATAGAACCATACA+AGG 0.639943 contig153end:+3315 None:intergenic
AGTAAGGTATAGGCTTTGGA+GGG 0.643282 contig153end:-2515 MsG0080047967.01.T01:CDS
TGGATTTATAGTCCATGCCG+AGG 0.645907 contig153end:-4198 MsG0080047967.01.T01:intron
GCATGGACTATAAATCCAGA+AGG 0.652893 contig153end:+4203 None:intergenic
GTATAACCACACCCTTAAAG+GGG 0.658662 contig153end:-2163 MsG0080047967.01.T01:three_prime_UTR
GAAGGAAGTGATGCTGCTGG+GGG 0.661858 contig153end:+4236 None:intergenic
ACAACCTTGTCATTCTACAA+AGG 0.662518 contig153end:+2275 None:intergenic
TGGACTATAAATCCAGAAGG+AGG 0.679360 contig153end:+4206 None:intergenic
AAGCAGACAAGAAAAGTGCG+TGG 0.679985 contig153end:-5951 MsG0080047967.01.T01:CDS
AATGACAAGGTTGTACTCTG+AGG 0.680999 contig153end:-2266 MsG0080047967.01.T01:three_prime_UTR
GCAGACAAGAAAAGTGCGTG+GGG 0.696719 contig153end:-5949 MsG0080047967.01.T01:CDS
GTTGATAGAACCATACAAGG+TGG 0.758266 contig153end:+3318 None:intergenic
CGTATCGCATGTCCCTACCA+CGG 0.775057 contig153end:-4526 MsG0080047967.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAAATAACAAAAAAAA+AGG + contig153end:2246-2265 None:intergenic 10.0%
!! AATTTATCTAAATTTAATAG+CGG + contig153end:2701-2720 None:intergenic 10.0%
!! ATTAAGTTTAAATTTAACAA+TGG + contig153end:3026-3045 None:intergenic 10.0%
!! TATAAATTTAGTCACTATTT+AGG - contig153end:2448-2467 MsG0080047967.01.T01:exon 15.0%
!! TTATGAAATGATAGATTTAT+AGG - contig153end:5722-5741 MsG0080047967.01.T01:intron 15.0%
!! AAAAAAGAAGATAAAAGTCA+TGG - contig153end:5074-5093 MsG0080047967.01.T01:CDS 20.0%
!! AAAGAGAAAAATATCCTTAT+TGG + contig153end:6780-6799 None:intergenic 20.0%
!! ACTATACTTATTAAATACCT+CGG + contig153end:4992-5011 None:intergenic 20.0%
!! AGAAATTCTTTAAATTAGGA+TGG + contig153end:4306-4325 None:intergenic 20.0%
!! ATCCTAATTTAAAGAATTTC+TGG - contig153end:4305-4324 MsG0080047967.01.T01:CDS 20.0%
!! ATTGAATCATATCACTTATA+AGG + contig153end:5260-5279 None:intergenic 20.0%
!! TACCAGAAATTCTTTAAATT+AGG + contig153end:4310-4329 None:intergenic 20.0%
!! TCAAATAAGCAAATTAAAAC+AGG + contig153end:5419-5438 None:intergenic 20.0%
!! TCATGTATCATAATAACTTA+GGG - contig153end:5393-5412 MsG0080047967.01.T01:intron 20.0%
!! TCTTAATAATCAGAAACTAT+TGG - contig153end:3866-3885 MsG0080047967.01.T01:intron 20.0%
!! TTCATGTATCATAATAACTT+AGG - contig153end:5392-5411 MsG0080047967.01.T01:intron 20.0%
!! TTGAATCATATCACTTATAA+GGG + contig153end:5259-5278 None:intergenic 20.0%
!!! ATTTTTCTGAAATCAAGTTA+TGG + contig153end:6377-6396 None:intergenic 20.0%
!!! GTTTCTTTTAGGTTTTTAAT+AGG - contig153end:2664-2683 MsG0080047967.01.T01:intron 20.0%
!!! TATCATACATTGTTTCTTTT+AGG - contig153end:2653-2672 MsG0080047967.01.T01:intron 20.0%
!!! TCTTTAGCTTATACTTTTTT+GGG - contig153end:3142-3161 MsG0080047967.01.T01:intron 20.0%
!!! TTCTTTAGCTTATACTTTTT+TGG - contig153end:3141-3160 MsG0080047967.01.T01:intron 20.0%
!!! TTTATGTTTTTTGTGTAAAC+TGG - contig153end:2723-2742 MsG0080047967.01.T01:intron 20.0%
! AAACCATACTCTTTCATATA+TGG + contig153end:3117-3136 None:intergenic 25.0%
! AAAGGACTAAAAGCAAAAAA+TGG + contig153end:4443-4462 None:intergenic 25.0%
! AAGAAAAGCTTAAATGTATC+AGG - contig153end:4265-4284 MsG0080047967.01.T01:CDS 25.0%
! AATAAGCAGAAAACAACTTA+TGG + contig153end:5511-5530 None:intergenic 25.0%
! ACAGTGTTAAATCCAATTTA+TGG - contig153end:6961-6980 MsG0080047967.01.T01:intron 25.0%
! AGACGACAAATATCTTTAAA+AGG + contig153end:4461-4480 None:intergenic 25.0%
! ATAAGTTAATGAATTACTGC+AGG - contig153end:4072-4091 MsG0080047967.01.T01:intron 25.0%
! ATGATATTGAGTACTTAGAT+TGG - contig153end:3336-3355 MsG0080047967.01.T01:CDS 25.0%
! CAAAAAATGGTATATTTGCA+AGG + contig153end:4430-4449 None:intergenic 25.0%
! GATTATTAACTACTCAACAT+TGG - contig153end:6312-6331 MsG0080047967.01.T01:intron 25.0%
! TAATTATTGTGTGTGTTGAA+GGG + contig153end:6710-6729 None:intergenic 25.0%
! TCAATATGCGAAAATGAAAT+TGG - contig153end:5275-5294 MsG0080047967.01.T01:CDS 25.0%
! TCAATTCAAACAAACATAGA+TGG + contig153end:3534-3553 None:intergenic 25.0%
! TCTCATAGAAATAAATCTGT+TGG + contig153end:4755-4774 None:intergenic 25.0%
! TGATTATTAAGATAAGCACA+TGG + contig153end:3858-3877 None:intergenic 25.0%
! TGTTGATATTTCCATACTTT+AGG - contig153end:6535-6554 MsG0080047967.01.T01:intron 25.0%
! TTAATTATTGTGTGTGTTGA+AGG + contig153end:6711-6730 None:intergenic 25.0%
!! AAAACTTTTCCTTTACTTAG+TGG + contig153end:3284-3303 None:intergenic 25.0%
!! AATATTATGTCCTTTTACTC+TGG - contig153end:2895-2914 MsG0080047967.01.T01:intron 25.0%
!! ACTAAGTAAAGGAAAAGTTT+TGG - contig153end:3283-3302 MsG0080047967.01.T01:intron 25.0%
!! CTCATTTAAAACCTAAAGTA+TGG + contig153end:6549-6568 None:intergenic 25.0%
!! CTTCAAAAGGAACAAATTTT+GGG - contig153end:6154-6173 MsG0080047967.01.T01:intron 25.0%
!! GATACATTTAAGCTTTTCTT+CGG + contig153end:4265-4284 None:intergenic 25.0%
!! TTCAAACTCGAATTCTAAAA+TGG + contig153end:2590-2609 None:intergenic 25.0%
!!! ATCTTTCTTGTGTTTGTTTT+TGG - contig153end:6459-6478 MsG0080047967.01.T01:intron 25.0%
!!! CATACTTTAGGTTTTAAATG+AGG - contig153end:6547-6566 MsG0080047967.01.T01:intron 25.0%
!!! CTTGTTTTATCTTTTGAAGA+GGG + contig153end:5963-5982 None:intergenic 25.0%
!!! GAACAAATTTTGGGTATTTA+TGG - contig153end:6163-6182 MsG0080047967.01.T01:intron 25.0%
!!! TCTTGTTTTATCTTTTGAAG+AGG + contig153end:5964-5983 None:intergenic 25.0%
AAAATGAGTTACGCTTCAAA+AGG - contig153end:6141-6160 MsG0080047967.01.T01:intron 30.0%
AAACTCTTGCTTCAGATATA+TGG + contig153end:4099-4118 None:intergenic 30.0%
AACTGAAATTTCCTAATGGT+TGG - contig153end:4779-4798 MsG0080047967.01.T01:intron 30.0%
AAGATGGTGAAACCATAAAT+TGG + contig153end:6976-6995 None:intergenic 30.0%
AATCAGATACCATAAGAAAG+TGG - contig153end:6261-6280 MsG0080047967.01.T01:intron 30.0%
AATGTCGAAGTATGAGTAAA+AGG + contig153end:5196-5215 None:intergenic 30.0%
ACACTGTACACAAATTTAAG+AGG + contig153end:6948-6967 None:intergenic 30.0%
ATACTCTTTCATATATGGAC+CGG + contig153end:3112-3131 None:intergenic 30.0%
ATATAGGGAGAATACAACAA+CGG + contig153end:3817-3836 None:intergenic 30.0%
ATGTCGAAGTATGAGTAAAA+GGG + contig153end:5195-5214 None:intergenic 30.0%
ATTGCTATATAGAATGTCAC+TGG - contig153end:5983-6002 MsG0080047967.01.T01:CDS 30.0%
CAACAAGAGAGAATGAATAA+AGG - contig153end:6590-6609 MsG0080047967.01.T01:intron 30.0%
CAGAAACTGAAATTTCCTAA+TGG - contig153end:4775-4794 MsG0080047967.01.T01:intron 30.0%
CATAGCTTAGAATACCTATT+AGG + contig153end:5019-5038 None:intergenic 30.0%
CTTATTTCCATAAACTCTCT+AGG - contig153end:3648-3667 MsG0080047967.01.T01:intron 30.0%
CTTATTTGAGCTTATTTACC+TGG - contig153end:5430-5449 MsG0080047967.01.T01:intron 30.0%
CTTTATTCATTCTCTCTTGT+TGG + contig153end:6592-6611 None:intergenic 30.0%
GAACTTAGAGAAACGAATTT+CGG - contig153end:2852-2871 MsG0080047967.01.T01:intron 30.0%
GACATATTTGAGCTTATCTA+TGG - contig153end:3552-3571 MsG0080047967.01.T01:intron 30.0%
GATGCTTTATAGCACATATA+GGG + contig153end:3832-3851 None:intergenic 30.0%
GCACATATGATGAATAGTTA+TGG + contig153end:6355-6374 None:intergenic 30.0%
TAAGTATAGTCTGTCCTAAT+AGG - contig153end:5002-5021 MsG0080047967.01.T01:CDS 30.0%
TAATCAGAAACTATTGGTGT+AGG - contig153end:3872-3891 MsG0080047967.01.T01:intron 30.0%
TATTAAGATAAGCACATGGT+GGG + contig153end:3854-3873 None:intergenic 30.0%
TCTAAATTTAATAGCGGCAT+AGG + contig153end:2695-2714 None:intergenic 30.0%
TTATTAAGATAAGCACATGG+TGG + contig153end:3855-3874 None:intergenic 30.0%
TTGGAAGTTCTACAAAAGAT+AGG + contig153end:2172-2191 None:intergenic 30.0%
TTTCACAAAACAGATTGTCA+TGG - contig153end:5114-5133 MsG0080047967.01.T01:intron 30.0%
! AAAAGGCATATGCTTAAGAA+GGG + contig153end:6018-6037 None:intergenic 30.0%
! AATTAGCTGAAACCTTTTCA+TGG + contig153end:3397-3416 None:intergenic 30.0%
! ATGATATGCTTTTATGATGC+AGG - contig153end:5617-5636 MsG0080047967.01.T01:intron 30.0%
! CAATTGATCTAAGATAGGTT+CGG - contig153end:2561-2580 MsG0080047967.01.T01:CDS 30.0%
! GAAGTCTTTTTCTTTTGACA+AGG - contig153end:5337-5356 MsG0080047967.01.T01:intron 30.0%
! GCTTCAAAAGGAACAAATTT+TGG - contig153end:6153-6172 MsG0080047967.01.T01:intron 30.0%
! GGTACTATATAACTTTTGAC+TGG - contig153end:3505-3524 MsG0080047967.01.T01:intron 30.0%
! TAAAAGGCATATGCTTAAGA+AGG + contig153end:6019-6038 None:intergenic 30.0%
! TAAAAGTACACCAGAGTAAA+AGG + contig153end:2908-2927 None:intergenic 30.0%
! TATCTGATTTTCTAACCACT+CGG + contig153end:6250-6269 None:intergenic 30.0%
! TCTGTTTTGTGAAAAGATAC+CGG + contig153end:5108-5127 None:intergenic 30.0%
! TCTTAAGCATATGCCTTTTA+TGG - contig153end:6019-6038 MsG0080047967.01.T01:CDS 30.0%
! TGAATAAAGGTGCAAATGTA+TGG - contig153end:6603-6622 MsG0080047967.01.T01:intron 30.0%
! TTAGATATTTCTGATTTGCG+CGG - contig153end:5662-5681 MsG0080047967.01.T01:intron 30.0%
!! ACAGATTTATCAGAAGTACT+TGG + contig153end:4220-4239 None:intergenic 30.0%
!! ATTACTTTTGGACAACCTTT+TGG - contig153end:5156-5175 MsG0080047967.01.T01:intron 30.0%
!! GTAAACTTAGCTTTTAGTCT+TGG - contig153end:2360-2379 MsG0080047967.01.T01:three_prime_UTR 30.0%
!! TAAGTTGACTTGTAAGGTAA+GGG - contig153end:2402-2421 MsG0080047967.01.T01:three_prime_UTR 30.0%
!! TGACTTTAAGTTGACTTGTA+AGG - contig153end:2396-2415 MsG0080047967.01.T01:three_prime_UTR 30.0%
!! TTAAGTTGACTTGTAAGGTA+AGG - contig153end:2401-2420 MsG0080047967.01.T01:three_prime_UTR 30.0%
!!! AGGTTTTAAATGAGGATCTA+CGG - contig153end:6555-6574 MsG0080047967.01.T01:intron 30.0%
!!! ATTCCATGTTTTGAGAAAGA+AGG - contig153end:4883-4902 MsG0080047967.01.T01:CDS 30.0%
!!! CTTTGTGAATTTTTTGACAC+CGG - contig153end:5776-5795 MsG0080047967.01.T01:intron 30.0%
!!! GATTAGTTGCTTGTTTTGTA+AGG - contig153end:2262-2281 MsG0080047967.01.T01:three_prime_UTR 30.0%
!!! TTCCATGTTTTGAGAAAGAA+GGG - contig153end:4884-4903 MsG0080047967.01.T01:CDS 30.0%
!!! TTTTGAAGCGTAACTCATTT+TGG + contig153end:6142-6161 None:intergenic 30.0%
AAAAGTAATCCGTGTTCAAC+CGG + contig153end:5145-5164 None:intergenic 35.0%
AAAAGTCATGGTTTCTTACC+CGG - contig153end:5086-5105 MsG0080047967.01.T01:intron 35.0%
AAACTCCATATCAATCGGAT+AGG + contig153end:5829-5848 None:intergenic 35.0%
AACACTTCGTACAAAACTGT+AGG + contig153end:2980-2999 None:intergenic 35.0%
AACCTTGCATTAGAACTTCA+TGG - contig153end:6817-6836 MsG0080047967.01.T01:intron 35.0%
AACTCCATATCAATCGGATA+GGG + contig153end:5828-5847 None:intergenic 35.0%
AAGAAAGTTTCTCCTGTGTA+GGG - contig153end:3076-3095 MsG0080047967.01.T01:intron 35.0%
AAGCTATCCTAGAGAGTTTA+TGG + contig153end:3658-3677 None:intergenic 35.0%
AAGCTGTTTATCCAAACAAG+TGG - contig153end:3779-3798 MsG0080047967.01.T01:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG + contig153end:3634-3653 None:intergenic 35.0%
ACAACCTTGTCATTCTACAA+AGG + contig153end:6898-6917 None:intergenic 35.0%
ACATTTAGCATTCGAGTAGA+TGG + contig153end:4850-4869 None:intergenic 35.0%
ACGCTTCTTAAGATCCAATA+AGG - contig153end:6763-6782 MsG0080047967.01.T01:intron 35.0%
ACTTATTAAATACCTCGGCA+TGG + contig153end:4987-5006 None:intergenic 35.0%
AGAAGAAGAAGAAGAAAGAG+AGG + contig153end:2214-2233 None:intergenic 35.0%
AGCTGTTTATCCAAACAAGT+GGG - contig153end:3780-3799 MsG0080047967.01.T01:intron 35.0%
ATCCCTTCTTTCTCAAAACA+TGG + contig153end:4889-4908 None:intergenic 35.0%
ATTTACAGAGCCAAGATGAA+GGG + contig153end:4618-4637 None:intergenic 35.0%
ATTTACATAAGCTGCTACCT+TGG + contig153end:5546-5565 None:intergenic 35.0%
CAAACAAGTGGGATAAAGTT+TGG - contig153end:3791-3810 MsG0080047967.01.T01:intron 35.0%
CAAACTTTATCCCACTTGTT+TGG + contig153end:3793-3812 None:intergenic 35.0%
CAATTGATTGTGTTTGAGCA+AGG - contig153end:6105-6124 MsG0080047967.01.T01:intron 35.0%
CAGGGTTTGAAAGGTAAATT+TGG - contig153end:3176-3195 MsG0080047967.01.T01:intron 35.0%
CATACAACAATCCCCTTTAA+GGG + contig153end:7021-7040 None:intergenic 35.0%
CTATGAAAGTGATGAGAAGA+AGG + contig153end:2111-2130 None:intergenic 35.0%
CTCCATAGATGTTCCATAAA+AGG + contig153end:6035-6054 None:intergenic 35.0%
CTGTACATACTGAAAGAAGA+AGG - contig153end:4236-4255 MsG0080047967.01.T01:CDS 35.0%
GCGCAAATCAGAAATATCTA+AGG + contig153end:5663-5682 None:intergenic 35.0%
GGATGCTTTATAGCACATAT+AGG + contig153end:3833-3852 None:intergenic 35.0%
GGTATAAACGAAACAAACCT+AGG + contig153end:5238-5257 None:intergenic 35.0%
GGTCCATATATGAAAGAGTA+TGG - contig153end:3111-3130 MsG0080047967.01.T01:intron 35.0%
GTGAGTGGTTTAATAATAGG+TGG - contig153end:2536-2555 MsG0080047967.01.T01:CDS 35.0%
GTGTTTGAGCAAGGAATAAA+AGG - contig153end:6114-6133 MsG0080047967.01.T01:intron 35.0%
GTTCCTCAAAACATTCCATT+GGG + contig153end:4523-4542 None:intergenic 35.0%
GTTGATTAAGAATTCCTGAC+TGG - contig153end:7059-7078 MsG0080047967.01.T01:exon 35.0%
GTTGGATCAAATTAGAGACT+TGG - contig153end:3484-3503 MsG0080047967.01.T01:intron 35.0%
TAGTAGTGAGTTACATGACA+TGG - contig153end:4729-4748 MsG0080047967.01.T01:intron 35.0%
TATGGTTTCACCATCTTAGA+TGG - contig153end:6979-6998 MsG0080047967.01.T01:intron 35.0%
TCATACAACAATCCCCTTTA+AGG + contig153end:7022-7041 None:intergenic 35.0%
TCATATCAACACAACATTCC+CGG + contig153end:6868-6887 None:intergenic 35.0%
TGAACATAACTCGACAAAGT+TGG - contig153end:2606-2625 MsG0080047967.01.T01:CDS 35.0%
TGACTTAAAGGATGATTCCA+TGG - contig153end:4348-4367 MsG0080047967.01.T01:CDS 35.0%
TGGAAGAATTGGTAAATGAC+AGG - contig153end:4146-4165 MsG0080047967.01.T01:intron 35.0%
TGTCGAAGTATGAGTAAAAG+GGG + contig153end:5194-5213 None:intergenic 35.0%
TGTTCCTTTGTAGAATGACA+AGG - contig153end:6891-6910 MsG0080047967.01.T01:intron 35.0%
TTATTTCCATGAGTTCTCCA+AGG - contig153end:5526-5545 MsG0080047967.01.T01:intron 35.0%
TTTCCTAATGGTTGGATATC+AGG - contig153end:4787-4806 MsG0080047967.01.T01:intron 35.0%
TTTGGATAAACTCGCTTACA+TGG - contig153end:4126-4145 MsG0080047967.01.T01:intron 35.0%
! AAAGGCATATGCTTAAGAAG+GGG + contig153end:6017-6036 None:intergenic 35.0%
! AAAGTGGTAATGTGCCTAAT+TGG - contig153end:6277-6296 MsG0080047967.01.T01:intron 35.0%
! CAAATCCGAATTTGAAGCTT+TGG + contig153end:4038-4057 None:intergenic 35.0%
! CATACTTCGACATTTGCTAA+GGG - contig153end:5202-5221 MsG0080047967.01.T01:CDS 35.0%
! CTGTTTTGTGAAAAGATACC+GGG + contig153end:5107-5126 None:intergenic 35.0%
! CTTTTATGGAACATCTATGG+AGG - contig153end:6033-6052 MsG0080047967.01.T01:intron 35.0%
! GTATGGTTCTATCAACCATT+GGG - contig153end:5859-5878 MsG0080047967.01.T01:CDS 35.0%
! GTTATCTTTAGGGGTAAAGA+TGG - contig153end:4548-4567 MsG0080047967.01.T01:CDS 35.0%
! TAGATATTTCTGATTTGCGC+GGG - contig153end:5663-5682 MsG0080047967.01.T01:intron 35.0%
! TCATACTTCGACATTTGCTA+AGG - contig153end:5201-5220 MsG0080047967.01.T01:CDS 35.0%
! TGACAACTTGTCATCCATTT+TGG + contig153end:2792-2811 None:intergenic 35.0%
! TGCCTTTTATGGAACATCTA+TGG - contig153end:6030-6049 MsG0080047967.01.T01:intron 35.0%
! TGGCTCAATTGATCTAAGAT+AGG - contig153end:2556-2575 MsG0080047967.01.T01:CDS 35.0%
! TGTATGGTTCTATCAACCAT+TGG - contig153end:5858-5877 MsG0080047967.01.T01:CDS 35.0%
!! ATGGTTGATAGAACCATACA+AGG + contig153end:5858-5877 None:intergenic 35.0%
!! CATGTATTTTGAACACATCC+AGG + contig153end:4578-4597 None:intergenic 35.0%
!!! GCTTATACTTTTTTGGGTTG+TGG - contig153end:3148-3167 MsG0080047967.01.T01:intron 35.0%
!!! TTTTGGGTTGTGGATTTTCA+GGG - contig153end:3158-3177 MsG0080047967.01.T01:intron 35.0%
!!! TTTTTGGGTTGTGGATTTTC+AGG - contig153end:3157-3176 MsG0080047967.01.T01:intron 35.0%
AAGAAGGGATGATCTGGATT+TGG - contig153end:4899-4918 MsG0080047967.01.T01:CDS 40.0%
AAGCCCTTGTGAGACTATTT+GGG - contig153end:3579-3598 MsG0080047967.01.T01:intron 40.0%
AATCTCAAAACCTGTGACTC+GGG - contig153end:2514-2533 MsG0080047967.01.T01:CDS 40.0%
AATGACAAGGTTGTACTCTG+AGG - contig153end:6904-6923 MsG0080047967.01.T01:intron 40.0%
ACAAGCTTGGAGTAAGGTAT+AGG - contig153end:6645-6664 MsG0080047967.01.T01:intron 40.0%
ACAGATTGTCATGGAACTTC+CGG - contig153end:5123-5142 MsG0080047967.01.T01:intron 40.0%
ACATAACTCGACAAAGTTGG+AGG - contig153end:2609-2628 MsG0080047967.01.T01:CDS 40.0%
ACCATGAAAAAGGATCTAGC+TGG - contig153end:3942-3961 MsG0080047967.01.T01:intron 40.0%
ACCCTAATTTGAGCATGCAA+CGG + contig153end:2830-2849 None:intergenic 40.0%
ACTCGCTTACATGGAAGAAT+TGG - contig153end:4135-4154 MsG0080047967.01.T01:intron 40.0%
AGCAAGAGTTTCTACTGCTT+TGG - contig153end:4108-4127 MsG0080047967.01.T01:intron 40.0%
AGCCACCAAAGCTTCAAATT+CGG - contig153end:4030-4049 MsG0080047967.01.T01:CDS 40.0%
ATCATGCCTAGCTACTTCTA+TGG + contig153end:3321-3340 None:intergenic 40.0%
ATCTGGTCTGCAAGGATATT+GGG - contig153end:5800-5819 MsG0080047967.01.T01:CDS 40.0%
CAAAACATTCCATTGGGATC+TGG + contig153end:4517-4536 None:intergenic 40.0%
CAATCTCAAAACCTGTGACT+CGG - contig153end:2513-2532 MsG0080047967.01.T01:CDS 40.0%
CAGGTGTGTTGAACATTCTT+TGG + contig153end:5919-5938 None:intergenic 40.0%
CATATCAACACAACATTCCC+GGG + contig153end:6867-6886 None:intergenic 40.0%
CATTTACAGAGCCAAGATGA+AGG + contig153end:4619-4638 None:intergenic 40.0%
CCATGAAAAAGGATCTAGCT+GGG - contig153end:3943-3962 MsG0080047967.01.T01:intron 40.0%
CGGGTGAGTGGTTTAATAAT+AGG - contig153end:2533-2552 MsG0080047967.01.T01:CDS 40.0%
CTACCACGGTTAGTATTCAT+CGG - contig153end:4658-4677 MsG0080047967.01.T01:intron 40.0%
CTTTGTCCTTTCAATTTCCC+GGG + contig153end:5894-5913 None:intergenic 40.0%
GAAGAAAGTTTCTCCTGTGT+AGG - contig153end:3075-3094 MsG0080047967.01.T01:intron 40.0%
GATGAATACTAACCGTGGTA+GGG + contig153end:4659-4678 None:intergenic 40.0%
GCTTTGTCCTTTCAATTTCC+CGG + contig153end:5895-5914 None:intergenic 40.0%
GGATTGATATCGACATACCA+TGG + contig153end:4368-4387 None:intergenic 40.0%
GGCACATTACCACTTTCTTA+TGG + contig153end:6273-6292 None:intergenic 40.0%
GGTATAACCACACCCTTAAA+GGG - contig153end:7006-7025 MsG0080047967.01.T01:CDS 40.0%
GGTCGAAACTCCATATCAAT+CGG + contig153end:5834-5853 None:intergenic 40.0%
GGTTCCTCAAAACATTCCAT+TGG + contig153end:4524-4543 None:intergenic 40.0%
GTATAACCACACCCTTAAAG+GGG - contig153end:7007-7026 MsG0080047967.01.T01:CDS 40.0%
GTCTCTAATTTGATCCAACG+AGG + contig153end:3483-3502 None:intergenic 40.0%
TAAAGCAGAAGCAGTAGCTA+TGG + contig153end:2143-2162 None:intergenic 40.0%
TAAGCCCTTGTGAGACTATT+TGG - contig153end:3578-3597 MsG0080047967.01.T01:intron 40.0%
TAATGGTTGGATATCAGGCT+GGG - contig153end:4792-4811 MsG0080047967.01.T01:intron 40.0%
TATACCACCACCATCTAAGA+TGG + contig153end:6992-7011 None:intergenic 40.0%
TCAGAAACTATTGGTGTAGG+TGG - contig153end:3875-3894 MsG0080047967.01.T01:intron 40.0%
TCTCCATCGAAGAACCAATT+AGG + contig153end:6294-6313 None:intergenic 40.0%
TCTCCCAAATAGTCTCACAA+GGG + contig153end:3585-3604 None:intergenic 40.0%
TGGACTATAAATCCAGAAGG+AGG + contig153end:4967-4986 None:intergenic 40.0%
TGGTATAACCACACCCTTAA+AGG - contig153end:7005-7024 MsG0080047967.01.T01:CDS 40.0%
TTACCCCTAAAGATAACCCA+TGG + contig153end:4545-4564 None:intergenic 40.0%
TTAGGATGGTATGACTGAAC+TGG + contig153end:4292-4311 None:intergenic 40.0%
TTCAAGCCATAGAAGTAGCT+AGG - contig153end:3312-3331 MsG0080047967.01.T01:intron 40.0%
TTCCAAGCTTGACACCAAAA+GGG - contig153end:2186-2205 MsG0080047967.01.T01:three_prime_UTR 40.0%
TTGAGAAAGAAGGGATGATC+TGG - contig153end:4893-4912 MsG0080047967.01.T01:CDS 40.0%
TTGGAGTAAGGTATAGGCTT+TGG - contig153end:6651-6670 MsG0080047967.01.T01:intron 40.0%
TTTACAGAGCCAAGATGAAG+GGG + contig153end:4617-4636 None:intergenic 40.0%
! AGCCATGAAGTTCTAATGCA+AGG + contig153end:6822-6841 None:intergenic 40.0%
! AGGAACCATGGGTTATCTTT+AGG - contig153end:4537-4556 MsG0080047967.01.T01:CDS 40.0%
! ATCCGAATTTGAAGCTTTGG+TGG + contig153end:4035-4054 None:intergenic 40.0%
! ATTCCATTGGGATCTGGAAT+AGG + contig153end:4511-4530 None:intergenic 40.0%
! GAACCATGGGTTATCTTTAG+GGG - contig153end:4539-4558 MsG0080047967.01.T01:CDS 40.0%
! GATCCCAATGGAATGTTTTG+AGG - contig153end:4517-4536 MsG0080047967.01.T01:intron 40.0%
! GCATGGACTATAAATCCAGA+AGG + contig153end:4970-4989 None:intergenic 40.0%
! GGAACCATGGGTTATCTTTA+GGG - contig153end:4538-4557 MsG0080047967.01.T01:CDS 40.0%
! GTTGATAGAACCATACAAGG+TGG + contig153end:5855-5874 None:intergenic 40.0%
! TAGCTGAAACCTTTTCATGG+AGG + contig153end:3394-3413 None:intergenic 40.0%
! TCTAAAGCGCCACTAAGTAA+AGG - contig153end:3272-3291 MsG0080047967.01.T01:intron 40.0%
! TTCCATTGGGATCTGGAATA+GGG + contig153end:4510-4529 None:intergenic 40.0%
!! AGTAAGGTATAGGCTTTGGA+GGG - contig153end:6655-6674 MsG0080047967.01.T01:intron 40.0%
!! ATCAGAAGTACTTGGAGAAG+AGG + contig153end:4212-4231 None:intergenic 40.0%
!! CATCTTGGCTCTGTAAATGA+GGG - contig153end:4620-4639 MsG0080047967.01.T01:CDS 40.0%
!! GGTTGAACACGGATTACTTT+TGG - contig153end:5144-5163 MsG0080047967.01.T01:intron 40.0%
!! GTGGATTTTCAGGGTTTGAA+AGG - contig153end:3167-3186 MsG0080047967.01.T01:intron 40.0%
!! TCATCTTGGCTCTGTAAATG+AGG - contig153end:4619-4638 MsG0080047967.01.T01:CDS 40.0%
!! TGCTTTCTCTGCTGACTTAA+AGG - contig153end:4336-4355 MsG0080047967.01.T01:CDS 40.0%
!! TTTGGAGTGTTTGCTGTGTT+TGG - contig153end:3194-3213 MsG0080047967.01.T01:intron 40.0%
!!! AAGAAAGAGAGGTACCCTTT+TGG + contig153end:2203-2222 None:intergenic 40.0%
!!! AATTTTTTGACACCGGCATC+TGG - contig153end:5783-5802 MsG0080047967.01.T01:intron 40.0%
!!! AGTCACAGGTTTTGAGATTG+AGG + contig153end:2513-2532 None:intergenic 40.0%
!!! GGAATGTTTTGAGGAACCAT+GGG - contig153end:4526-4545 MsG0080047967.01.T01:intron 40.0%
!!! GTCACAGGTTTTGAGATTGA+GGG + contig153end:2512-2531 None:intergenic 40.0%
!!! TGGAATGTTTTGAGGAACCA+TGG - contig153end:4525-4544 MsG0080047967.01.T01:intron 40.0%
AAAGAAGGAAGTGATGCTGC+TGG + contig153end:4940-4959 None:intergenic 45.0%
AAGAAGGAAGTGATGCTGCT+GGG + contig153end:4939-4958 None:intergenic 45.0%
AAGTCAGCAGAGAAAGCAAC+AGG + contig153end:4334-4353 None:intergenic 45.0%
AGCAGTAGCTATGGCATTCA+TGG + contig153end:2134-2153 None:intergenic 45.0%
AGGGTAAGCAGACATGTAGT+TGG + contig153end:5944-5963 None:intergenic 45.0%
AGTACTTAGATTGGCGAGCT+CGG - contig153end:3345-3364 MsG0080047967.01.T01:CDS 45.0%
ATCAACCTAGTGAAGCTACC+CGG - contig153end:6846-6865 MsG0080047967.01.T01:intron 45.0%
ATGGAACTTCCGGTTGAACA+CGG - contig153end:5133-5152 MsG0080047967.01.T01:intron 45.0%
CAGCCTGATATCCAACCATT+AGG + contig153end:4793-4812 None:intergenic 45.0%
CATCATGCTCCTCCATGAAA+AGG - contig153end:3382-3401 MsG0080047967.01.T01:CDS 45.0%
CATCTGGTCTGCAAGGATAT+TGG - contig153end:5799-5818 MsG0080047967.01.T01:CDS 45.0%
CCAAGCTTGTCATAGGTAAC+TGG + contig153end:6635-6654 None:intergenic 45.0%
CCAGAAGGAGGTAGTAAAGA+AGG + contig153end:4955-4974 None:intergenic 45.0%
CCAGTTACCTATGACAAGCT+TGG - contig153end:6632-6651 MsG0080047967.01.T01:intron 45.0%
CCTATGACAAGCTTGGAGTA+AGG - contig153end:6639-6658 MsG0080047967.01.T01:intron 45.0%
CCTTACTCCAAGCTTGTCAT+AGG + contig153end:6642-6661 None:intergenic 45.0%
CCTTCTTTACTACCTCCTTC+TGG - contig153end:4952-4971 MsG0080047967.01.T01:CDS 45.0%
CGATGAATACTAACCGTGGT+AGG + contig153end:4660-4679 None:intergenic 45.0%
CTAATGGTTGGATATCAGGC+TGG - contig153end:4791-4810 MsG0080047967.01.T01:intron 45.0%
CTCTCCCAAATAGTCTCACA+AGG + contig153end:3586-3605 None:intergenic 45.0%
CTTCCAAGCTTGACACCAAA+AGG - contig153end:2185-2204 MsG0080047967.01.T01:three_prime_UTR 45.0%
GACTTGAATTCACGAGCTAG+AGG + contig153end:3915-3934 None:intergenic 45.0%
GCCGTTGCATGCTCAAATTA+GGG - contig153end:2826-2845 MsG0080047967.01.T01:intron 45.0%
GCTCGTGAATTCAAGTCGAT+TGG - contig153end:3918-3937 MsG0080047967.01.T01:intron 45.0%
GGATCCCTATCCGATTGATA+TGG - contig153end:5821-5840 MsG0080047967.01.T01:CDS 45.0%
GGGTGCGATATTTGATGTAC+AGG - contig153end:3241-3260 MsG0080047967.01.T01:intron 45.0%
GGTTTCACCATCTTAGATGG+TGG - contig153end:6982-7001 MsG0080047967.01.T01:intron 45.0%
GTCGATTGGCACCATGAAAA+AGG - contig153end:3932-3951 MsG0080047967.01.T01:intron 45.0%
GTTCCGATGAATACTAACCG+TGG + contig153end:4664-4683 None:intergenic 45.0%
TAACCACTCGGACAAATCAC+AGG + contig153end:6238-6257 None:intergenic 45.0%
TAAGCACTTGTGGGACTGTT+TGG - contig153end:5455-5474 MsG0080047967.01.T01:intron 45.0%
TACCTGGCATAAGCACTTGT+GGG - contig153end:5446-5465 MsG0080047967.01.T01:intron 45.0%
TGCAACGGCGTTAAAACTCT+TGG + contig153end:2815-2834 None:intergenic 45.0%
TGGAGGGATGCATTGGAAAA+GGG - contig153end:6671-6690 MsG0080047967.01.T01:intron 45.0%
TGGATTTATAGTCCATGCCG+AGG - contig153end:4972-4991 MsG0080047967.01.T01:CDS 45.0%
TGTGTAGGGTCTACATCTTC+CGG - contig153end:3090-3109 MsG0080047967.01.T01:intron 45.0%
TTACCTGGCATAAGCACTTG+TGG - contig153end:5445-5464 MsG0080047967.01.T01:intron 45.0%
TTCCCTATTCCAGATCCCAA+TGG - contig153end:4505-4524 MsG0080047967.01.T01:intron 45.0%
TTGGAGGGATGCATTGGAAA+AGG - contig153end:6670-6689 MsG0080047967.01.T01:intron 45.0%
! AACAATCCCCTTTAAGGGTG+TGG + contig153end:7016-7035 None:intergenic 45.0%
! AAGCAGACAAGAAAAGTGCG+TGG - contig153end:3219-3238 MsG0080047967.01.T01:intron 45.0%
! AGCAGACAAGAAAAGTGCGT+GGG - contig153end:3220-3239 MsG0080047967.01.T01:intron 45.0%
! ATTAGCAGAAGCACACAGAC+AGG - contig153end:3977-3996 MsG0080047967.01.T01:CDS 45.0%
! ATTGGGATCTGGAATAGGGA+AGG + contig153end:4506-4525 None:intergenic 45.0%
! CTTAGTGGCGCTTTAGATCT+TGG + contig153end:3269-3288 None:intergenic 45.0%
! CTTCGACATTTGCTAAGGGA+TGG - contig153end:5206-5225 MsG0080047967.01.T01:CDS 45.0%
! GAGTAAGGTATAGGCTTTGG+AGG - contig153end:6654-6673 MsG0080047967.01.T01:intron 45.0%
! GTGCCTAATTGGTTCTTCGA+TGG - contig153end:6288-6307 MsG0080047967.01.T01:intron 45.0%
! TTCACCATCTTAGATGGTGG+TGG - contig153end:6985-7004 MsG0080047967.01.T01:CDS 45.0%
!! CCCAGCTAGATCCTTTTTCA+TGG + contig153end:3946-3965 None:intergenic 45.0%
!! CTTTTCATGGAGGAGCATGA+TGG + contig153end:3384-3403 None:intergenic 45.0%
!! TCATCCATTTTGGTCCCACA+AGG + contig153end:2782-2801 None:intergenic 45.0%
!!! ATGGAGGCATTTTGCAGAAC+AGG - contig153end:6049-6068 MsG0080047967.01.T01:intron 45.0%
!!! TACCCTTTTGGTGTCAAGCT+TGG + contig153end:2191-2210 None:intergenic 45.0%
!!! AATCATTTTTTTTAAATAAA+AGG + contig153end:4389-4408 None:intergenic 5.0%
AAAGGATCTAGCTGGGTTGC+AGG - contig153end:3950-3969 MsG0080047967.01.T01:intron 50.0%
ACCATTGGGATTTCGAAGCC+CGG - contig153end:5873-5892 MsG0080047967.01.T01:CDS 50.0%
ACTCGACAAAGTTGGAGGTG+TGG - contig153end:2614-2633 MsG0080047967.01.T01:CDS 50.0%
ACTTGGAGAAGAGGACGTCT+CGG + contig153end:4203-4222 None:intergenic 50.0%
AGAAGGAAGTGATGCTGCTG+GGG + contig153end:4938-4957 None:intergenic 50.0%
AGAGCATGTCCCCTTCATCT+TGG - contig153end:4605-4624 MsG0080047967.01.T01:CDS 50.0%
AGGGGTAAAGATGGCAAACC+TGG - contig153end:4557-4576 MsG0080047967.01.T01:CDS 50.0%
CACTCGGACAAATCACAGGT+TGG + contig153end:6234-6253 None:intergenic 50.0%
CGCCGTTGCATGCTCAAATT+AGG - contig153end:2825-2844 MsG0080047967.01.T01:intron 50.0%
CTGCTACCTTGGAGAACTCA+TGG + contig153end:5535-5554 None:intergenic 50.0%
GAGGATCTACGGCTAGTAGT+TGG - contig153end:6566-6585 MsG0080047967.01.T01:intron 50.0%
GGAAGATGTAGACCCTACAC+AGG + contig153end:3091-3110 None:intergenic 50.0%
GGAGTTTCGACCACCTTGTA+TGG - contig153end:5842-5861 MsG0080047967.01.T01:CDS 50.0%
GGCTGGGAATATACGACAGA+CGG - contig153end:4808-4827 MsG0080047967.01.T01:intron 50.0%
TATCCTTGCAGACCAGATGC+CGG + contig153end:5798-5817 None:intergenic 50.0%
TCAACCTAGTGAAGCTACCC+GGG - contig153end:6847-6866 MsG0080047967.01.T01:intron 50.0%
TCGAAGCCCGGGAAATTGAA+AGG - contig153end:5885-5904 MsG0080047967.01.T01:CDS 50.0%
! AGCAGACATGTAGTTGGTGC+AGG + contig153end:5938-5957 None:intergenic 50.0%
! CAACCTGTGATTTGTCCGAG+TGG - contig153end:6232-6251 MsG0080047967.01.T01:intron 50.0%
! CTAAGGGATGGAGTGTTCCT+AGG - contig153end:5218-5237 MsG0080047967.01.T01:CDS 50.0%
! GCAGACAAGAAAAGTGCGTG+GGG - contig153end:3221-3240 MsG0080047967.01.T01:intron 50.0%
!! TAGGCTTTGGAGGGATGCAT+TGG - contig153end:6664-6683 MsG0080047967.01.T01:intron 50.0%
AAACCACTCACCCGAGTCAC+AGG + contig153end:2527-2546 None:intergenic 55.0%
CAGACATGCATGCACCTCGT+TGG - contig153end:3466-3485 MsG0080047967.01.T01:intron 55.0%
CATTCCCGGGTAGCTTCACT+AGG + contig153end:6854-6873 None:intergenic 55.0%
CCATTGGGATTTCGAAGCCC+GGG - contig153end:5874-5893 MsG0080047967.01.T01:CDS 55.0%
CGTATCGCATGTCCCTACCA+CGG - contig153end:4644-4663 MsG0080047967.01.T01:CDS 55.0%
GAAGGAAGTGATGCTGCTGG+GGG + contig153end:4937-4956 None:intergenic 55.0%
GATTACGCAGTTGCGTGCGA+AGG + contig153end:2752-2771 None:intergenic 55.0%
GGGATGATCTGGATTTGGCC+TGG - contig153end:4904-4923 MsG0080047967.01.T01:CDS 55.0%
GTCCCACAAGTGCTTATGCC+AGG + contig153end:5451-5470 None:intergenic 55.0%
TTTGGTCCCACAAGGCTCGA+GGG + contig153end:2774-2793 None:intergenic 55.0%
! AAACCTGTGACTCGGGTGAG+TGG - contig153end:2521-2540 MsG0080047967.01.T01:CDS 55.0%
! CGAGCCTTGTGGGACCAAAA+TGG - contig153end:2775-2794 MsG0080047967.01.T01:intron 55.0%
! CGTAATCCCTCGAGCCTTGT+GGG - contig153end:2765-2784 MsG0080047967.01.T01:intron 55.0%
! TTTTGGTCCCACAAGGCTCG+AGG + contig153end:2775-2794 None:intergenic 55.0%
ACACCGGCATCTGGTCTGCA+AGG - contig153end:5792-5811 MsG0080047967.01.T01:CDS 60.0%
CCCGGGCTTCGAAATCCCAA+TGG + contig153end:5877-5896 None:intergenic 60.0%
GCGTAATCCCTCGAGCCTTG+TGG - contig153end:2764-2783 MsG0080047967.01.T01:intron 60.0%
GGGCGTGCGCAAGATCCAAA+AGG + contig153end:5174-5193 None:intergenic 60.0%
GCTGCTGGGGGATCACTGCC+AGG + contig153end:4925-4944 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig153end gene 2099 7093 2099 ID=MsG0080047967.01;Name=MsG0080047967.01
contig153end mRNA 2099 7093 2099 ID=MsG0080047967.01.T01;Parent=MsG0080047967.01;Name=MsG0080047967.01.T01;_AED=0.41;_eAED=0.42;_QI=34|0.75|0.77|1|0.87|0.77|9|363|472
contig153end exon 2099 2635 2099 ID=MsG0080047967.01.T01:exon:18184;Parent=MsG0080047967.01.T01
contig153end exon 3329 3416 3329 ID=MsG0080047967.01.T01:exon:18183;Parent=MsG0080047967.01.T01
contig153end exon 3953 4065 3953 ID=MsG0080047967.01.T01:exon:18182;Parent=MsG0080047967.01.T01
contig153end exon 4199 4383 4199 ID=MsG0080047967.01.T01:exon:18181;Parent=MsG0080047967.01.T01
contig153end exon 4527 4674 4527 ID=MsG0080047967.01.T01:exon:18180;Parent=MsG0080047967.01.T01
contig153end exon 4823 5098 4823 ID=MsG0080047967.01.T01:exon:18179;Parent=MsG0080047967.01.T01
contig153end exon 5194 5298 5194 ID=MsG0080047967.01.T01:exon:18178;Parent=MsG0080047967.01.T01
contig153end exon 5789 6043 5789 ID=MsG0080047967.01.T01:exon:18177;Parent=MsG0080047967.01.T01
contig153end exon 6985 7093 6985 ID=MsG0080047967.01.T01:exon:18176;Parent=MsG0080047967.01.T01
contig153end five_prime_UTR 7060 7093 7060 ID=MsG0080047967.01.T01:five_prime_utr;Parent=MsG0080047967.01.T01
contig153end CDS 6985 7059 6985 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end CDS 5789 6043 5789 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end CDS 5194 5298 5194 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end CDS 4823 5098 4823 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end CDS 4527 4674 4527 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end CDS 4199 4383 4199 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end CDS 3953 4065 3953 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end CDS 3329 3416 3329 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end CDS 2462 2635 2462 ID=MsG0080047967.01.T01:cds;Parent=MsG0080047967.01.T01
contig153end three_prime_UTR 2099 2461 2099 ID=MsG0080047967.01.T01:three_prime_utr;Parent=MsG0080047967.01.T01
Gene Sequence

>MsG0080047967.01.T01

ATGAATGCCATAGCTACTGCTTCTGCTTTATCTCTTCCTATCTTTTGTAGAACTTCCAAGCTTGACACCAAAAGGCTTATACTTTTTTGGGTTGTGGATTTTCAGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCGATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTTTTGGATGTATTTCAAGCCATAGAAGTAGCTAGGCATGATATTGAGTACTTAGATTGGCGAGCTCGGCAAGATGTGCTTACCATCATGCTCCTCCATGAAAAGGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTGCTGACTTAAAGGATGATTCCATGATCCCAATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAACCTGGATGTGTTCAAAATACATGTGCACACAGAGCATGTCCCCTTCATCTTGGCTCTGTAAATGAGGGTCGTATCGCATGTCCCTACCACGGCTGGGAATATACGACAGACGGAAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGATTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTTTAAATGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTACCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTTGGAGGGATGCATTGGAAAAGGGAGATAAGCAACTACCCTTCAACACACACAATAATTAA

Protein sequence

>MsG0080047967.01.T01

MNAIATASALSLPIFCRTSKLDTKRLILFWVVDFQGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVLDVFQAIEVARHDIEYLDWRARQDVLTIMLLHEKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGPVQSYHPNLKNFWYPVAFSADLKDDSMIPMECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNEGRIACPYHGWEYTTDGKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLWRDALEKGDKQLPFNTHNN*