AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043021.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043021.01.T01 MTR_8g027760 99.169 361 3 0 69 429 3 363 0.0 737
MsG0880043021.01.T01 MTR_8g027760 99.029 309 3 0 69 377 3 311 0.0 631
MsG0880043021.01.T01 MTR_1g051245 38.820 322 147 13 109 404 2 299 2.08e-43 154
MsG0880043021.01.T01 MTR_5g037350 67.059 85 28 0 5 89 485 569 7.89e-30 122
MsG0880043021.01.T01 MTR_3g023770 50.000 112 55 1 110 221 19 129 1.71e-28 109
MsG0880043021.01.T01 MTR_7g090270 59.036 83 34 0 116 198 5 87 1.88e-27 112
MsG0880043021.01.T01 MTR_1g090220 76.667 60 14 0 7 66 118 177 8.66e-23 95.1
MsG0880043021.01.T01 MTR_7g090290 51.613 93 44 1 132 224 1 92 1.16e-21 97.1
MsG0880043021.01.T01 MTR_3g467660 65.672 67 23 0 1 67 1 67 1.41e-20 92.4
MsG0880043021.01.T01 MTR_5g024920 71.642 67 17 1 5 71 17 81 2.97e-20 93.6
MsG0880043021.01.T01 MTR_1g021865 56.962 79 20 2 1 71 117 189 4.99e-20 88.6
MsG0880043021.01.T01 MTR_2g013980 71.831 71 20 0 2 72 1110 1180 1.79e-17 85.5
MsG0880043021.01.T01 MTR_3g102480 76.596 47 11 0 2 48 20 66 3.17e-17 77.4
MsG0880043021.01.T01 MTR_6g086840 57.895 57 24 0 28 84 9 65 4.36e-14 69.3
MsG0880043021.01.T01 MTR_3g011720 73.333 45 11 1 5 49 31 74 4.50e-13 64.7
MsG0880043021.01.T01 MTR_0001s0190 42.424 66 38 0 121 186 11 76 8.42e-13 64.7
MsG0880043021.01.T01 MTR_7g025530 60.563 71 27 1 2 72 250 319 5.23e-12 68.2
MsG0880043021.01.T01 MTR_1g115490 42.857 63 36 0 121 183 11 73 7.64e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043021.01.T01 AT2G46420 71.978 364 89 6 72 426 3 362 0.0 514
MsG0880043021.01.T01 AT2G46420 71.978 364 89 6 72 426 3 362 0.0 514
MsG0880043021.01.T01 AT2G46420 72.595 343 84 4 72 407 3 342 9.97e-176 495
MsG0880043021.01.T01 AT3G61700 70.572 367 86 9 71 427 3 357 5.95e-175 493
MsG0880043021.01.T01 AT3G61700 70.959 365 84 9 73 427 7 359 9.68e-175 493
MsG0880043021.01.T01 AT3G61700 70.959 365 84 9 73 427 7 359 9.68e-175 493
MsG0880043021.01.T01 AT3G61700 70.000 370 84 10 73 427 7 364 2.68e-172 487
MsG0880043021.01.T01 AT5G04090 38.387 310 164 9 100 404 10 297 5.37e-48 167
MsG0880043021.01.T01 AT5G04090 39.189 296 153 9 114 404 7 280 9.58e-48 166
MsG0880043021.01.T01 AT3G10250 38.486 317 167 10 109 410 2 305 1.01e-47 166
MsG0880043021.01.T01 AT3G10250 38.486 317 167 10 109 410 2 305 1.01e-47 166
MsG0880043021.01.T01 AT3G10250 38.486 317 167 10 109 410 2 305 1.01e-47 166
MsG0880043021.01.T01 AT3G10250 38.486 317 167 10 109 410 2 305 1.01e-47 166
MsG0880043021.01.T01 AT3G10250 38.065 310 155 10 109 398 2 294 2.94e-44 156
MsG0880043021.01.T01 AT5G04090 35.766 274 149 9 136 404 1 252 2.05e-32 124
MsG0880043021.01.T01 AT5G04090 35.766 274 149 9 136 404 1 252 2.05e-32 124
MsG0880043021.01.T01 AT5G04090 32.669 251 142 9 159 404 11 239 1.80e-20 90.9
MsG0880043021.01.T01 AT5G04090 32.669 251 142 9 159 404 11 239 1.80e-20 90.9
MsG0880043021.01.T01 AT5G04090 32.669 251 142 9 159 404 11 239 1.80e-20 90.9
MsG0880043021.01.T01 AT2G29605 37.079 89 55 1 110 198 12 99 5.31e-12 67.8
MsG0880043021.01.T01 AT3G55240 40.000 85 39 1 100 184 1 73 1.09e-11 61.6

Find 143 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCCATTCGGATGAATTC+TGG 0.145118 8:-17791552 MsG0880043021.01.T01:CDS
TTTGAGATATATCTATTATT+AGG 0.161419 8:-17788640 MsG0880043021.01.T01:three_prime_UTR
TTAGGTTAGGGAGAAAATTT+AGG 0.243691 8:-17788814 MsG0880043021.01.T01:three_prime_UTR
CTTGTTGCACATTAATTCTT+AGG 0.275223 8:-17788832 MsG0880043021.01.T01:three_prime_UTR
TGTAATTCATTTGATGCATT+TGG 0.283357 8:-17788593 MsG0880043021.01.T01:three_prime_UTR
GGCACCTTTCTATTAAATTC+TGG 0.297711 8:+17793179 None:intergenic
TTGAGATATATCTATTATTA+GGG 0.298619 8:-17788639 MsG0880043021.01.T01:three_prime_UTR
TGACAACATTAGAGAGAGTT+AGG 0.317746 8:-17793880 MsG0880043021.01.T01:CDS
TTCAAGCAATGATAGCAAAA+AGG 0.331651 8:-17793353 MsG0880043021.01.T01:CDS
CTTTATTCATATATAATTGC+AGG 0.333218 8:+17793158 None:intergenic
AATAAATTACCTCCCAAGTT+TGG 0.334177 8:+17790618 None:intergenic
TCAAGTTGTCATGTGGTTAA+TGG 0.343627 8:-17791597 MsG0880043021.01.T01:CDS
CTTTCCTCCCCTTAAGTTGA+AGG 0.350001 8:+17788858 None:intergenic
ATTGTTTGGATGTTCACTCT+TGG 0.355224 8:+17793420 None:intergenic
TGCACATTAATTCTTAGGTT+AGG 0.360279 8:-17788827 MsG0880043021.01.T01:three_prime_UTR
AACCGCAGATTTACCAAACT+TGG 0.370682 8:-17790631 MsG0880043021.01.T01:CDS
GCATCAGTTGTGTGATTGTT+TGG 0.373031 8:+17793406 None:intergenic
TTGTTTGGATGTTCACTCTT+GGG 0.381138 8:+17793421 None:intergenic
GCACATTAATTCTTAGGTTA+GGG 0.384750 8:-17788826 MsG0880043021.01.T01:three_prime_UTR
GGACCACAGTGCTCCTGATA+TGG 0.385772 8:-17790910 MsG0880043021.01.T01:CDS
GGGTGGAAATTGCTCGGTGC+AGG 0.397270 8:+17791570 None:intergenic
GAGGAGAAACCTTCAACTTA+AGG 0.399945 8:-17788867 MsG0880043021.01.T01:exon
TTGCACCGGATGGCGGGAAC+GGG 0.401037 8:-17790704 MsG0880043021.01.T01:CDS
GGAATCATTGGAGCCATATC+AGG 0.405214 8:+17790897 None:intergenic
ATTGGAGCCAATGGAACCTT+TGG 0.405471 8:+17792407 None:intergenic
GAAACTAGGCTTAGGTGGTT+TGG 0.407881 8:-17793830 MsG0880043021.01.T01:CDS
ACCCCATTCGGATGAATTCT+GGG 0.411528 8:-17791551 MsG0880043021.01.T01:CDS
TTCACTGCATCGGAAATATC+AGG 0.412044 8:-17790798 MsG0880043021.01.T01:CDS
CTACCTATATCCTGTTGATC+TGG 0.413318 8:+17789867 None:intergenic
GCTTGAATCTCCAGATCAAC+AGG 0.418289 8:-17789877 MsG0880043021.01.T01:CDS
TGGTTAAAACTCTACTGAAT+CGG 0.422829 8:-17793129 MsG0880043021.01.T01:CDS
TCTCCAGATCAACAGGATAT+AGG 0.424911 8:-17789870 MsG0880043021.01.T01:intron
CTTGCACCGGATGGCGGGAA+CGG 0.427993 8:-17790705 MsG0880043021.01.T01:CDS
TTCCCAGAATTCATCCGAAT+GGG 0.429662 8:+17791549 None:intergenic
TAATTCTGATGTGGTAAGTT+CGG 0.438364 8:-17790739 MsG0880043021.01.T01:CDS
AGCCGCAGGTCAGCCTCATA+TGG 0.443308 8:-17791634 MsG0880043021.01.T01:CDS
TAAATTTATATATTGTTGCT+TGG 0.443412 8:-17788563 MsG0880043021.01.T01:three_prime_UTR
ATCTAGCTTACTTGGCATGC+AGG 0.445337 8:-17788775 MsG0880043021.01.T01:three_prime_UTR
GCCACCGATGTTGGACTCAC+TGG 0.445851 8:+17790840 None:intergenic
TGCAGTTAACAATCTACCTA+TGG 0.446046 8:-17791688 MsG0880043021.01.T01:intron
TGCAGCTTGCACCGGATGGC+GGG 0.449913 8:-17790710 MsG0880043021.01.T01:CDS
CATACCAAGAGCTGTAAATC+CGG 0.451036 8:+17793093 None:intergenic
CGAGCAATTTCCACCCCATT+CGG 0.456487 8:-17791563 MsG0880043021.01.T01:CDS
GATCCCGGATTTACAGCTCT+TGG 0.457556 8:-17793097 MsG0880043021.01.T01:intron
TTTGCAGATCTTGGAGCTCT+AGG 0.459587 8:-17789945 MsG0880043021.01.T01:intron
TCCTCATCTGATTGAGAGCA+TGG 0.469797 8:+17788885 None:intergenic
AGCTAGGAGAGTAGATCAAA+TGG 0.471543 8:-17793777 MsG0880043021.01.T01:CDS
GCTGAGCCTGAGTCTGCAAC+AGG 0.471905 8:+17793382 None:intergenic
ATGTCATCATCTAGCTTACT+TGG 0.475503 8:-17788783 MsG0880043021.01.T01:three_prime_UTR
AGGAGAAACCTTCAACTTAA+GGG 0.477107 8:-17788866 MsG0880043021.01.T01:exon
TAGAAAAGATGGTGGAAACT+AGG 0.477620 8:-17793844 MsG0880043021.01.T01:CDS
GTTTCTGTTATAGTTTCTCT+AGG 0.478647 8:+17793722 None:intergenic
GGAGCCAATGGAACCTTTGG+AGG 0.481798 8:+17792410 None:intergenic
CCACTCGATGCCACCGATGT+TGG 0.483016 8:+17790831 None:intergenic
GAAATCCCGTTCCCGCCATC+CGG 0.484154 8:+17790699 None:intergenic
GGTTAAAACTCTACTGAATC+GGG 0.484157 8:-17793128 MsG0880043021.01.T01:CDS
GGGTGGATTCCATTCTGTAT+TGG 0.484433 8:+17792389 None:intergenic
CCATTCTGTATTGGAGCCAA+TGG 0.484477 8:+17792398 None:intergenic
GAGAGGTGAAGACAGCGCTT+AGG 0.486871 8:-17788617 MsG0880043021.01.T01:three_prime_UTR
ATATGAGGCTGACCTGCGGC+TGG 0.488258 8:+17791636 None:intergenic
TGGAGCTCTAGGAAACTATC+CGG 0.489098 8:-17789934 MsG0880043021.01.T01:CDS
AGTCAAATCACTAGAGGTAG+AGG 0.490595 8:-17793749 MsG0880043021.01.T01:CDS
ATAGGATGCTGCTGTAGTAC+TGG 0.491737 8:+17791660 None:intergenic
TCATTTCCCTTTCACTGCAT+CGG 0.494611 8:-17790808 MsG0880043021.01.T01:CDS
CAATGGAACCTTTGGAGGCA+TGG 0.494839 8:+17792415 None:intergenic
GGACATGTAGAGAGAAGACC+TGG 0.497099 8:-17793809 MsG0880043021.01.T01:CDS
CATGCCTCCAAAGGTTCCAT+TGG 0.502362 8:-17792414 MsG0880043021.01.T01:CDS
AGGTCCAGAATTTAATAGAA+AGG 0.502568 8:-17793183 MsG0880043021.01.T01:CDS
TCTGATGTGGTAAGTTCGGT+TGG 0.503015 8:-17790735 MsG0880043021.01.T01:CDS
CAGCATCCTATGCCAGCCGC+AGG 0.510852 8:-17791648 MsG0880043021.01.T01:CDS
AATCTGCGGTTAAATCTGAT+AGG 0.511665 8:+17790643 None:intergenic
TCAGCCTCATATGGACTCCA+TGG 0.515218 8:-17791625 MsG0880043021.01.T01:CDS
CTGCAGCTTGCACCGGATGG+CGG 0.520121 8:-17790711 MsG0880043021.01.T01:CDS
AATGGAATCCACCCTATGCC+TGG 0.520904 8:-17792380 MsG0880043021.01.T01:intron
GGTTGGACTGCAGCTTGCAC+CGG 0.520945 8:-17790718 MsG0880043021.01.T01:CDS
GAACGGGATTTCTAGATCGC+TGG 0.520967 8:-17790688 MsG0880043021.01.T01:CDS
GCATCGGAAATATCAGGAAT+GGG 0.521866 8:-17790792 MsG0880043021.01.T01:CDS
TGCATCGGAAATATCAGGAA+TGG 0.524609 8:-17790793 MsG0880043021.01.T01:CDS
AATGGAACCTTTGGAGGCAT+GGG 0.531912 8:+17792416 None:intergenic
AGATCTAGAGATTAATGAGT+TGG 0.538319 8:-17793690 MsG0880043021.01.T01:intron
GGTTTATTGAAGCATGGTGA+TGG 0.538713 8:-17790931 MsG0880043021.01.T01:intron
AGATGGTGGAAACTAGGCTT+AGG 0.540348 8:-17793838 MsG0880043021.01.T01:CDS
ACCGCAGATTTACCAAACTT+GGG 0.542890 8:-17790630 MsG0880043021.01.T01:CDS
GGCACCTATAGTAGAAAAGA+TGG 0.545839 8:-17793855 MsG0880043021.01.T01:CDS
AATATATTTCATTATTACTG+TGG 0.546740 8:-17788710 MsG0880043021.01.T01:three_prime_UTR
CTCCTAGCTACAAAATCCCC+AGG 0.549438 8:+17793791 None:intergenic
GATGCTCCTGTTGCAGACTC+AGG 0.552659 8:-17793388 MsG0880043021.01.T01:CDS
GGTGGAAATTGCTCGGTGCA+GGG 0.553715 8:+17791571 None:intergenic
GGCTGACCTGCGGCTGGCAT+AGG 0.554669 8:+17791642 None:intergenic
GATATTTCCGATGCAGTGAA+AGG 0.556620 8:+17790801 None:intergenic
ATTCCCAGAATTCATCCGAA+TGG 0.557362 8:+17791548 None:intergenic
GGACTGCAGCTTGCACCGGA+TGG 0.557517 8:-17790714 MsG0880043021.01.T01:CDS
ATATTTCCGATGCAGTGAAA+GGG 0.562015 8:+17790802 None:intergenic
ATATATGAATAAAGATGAAG+TGG 0.563348 8:-17793149 MsG0880043021.01.T01:CDS
GTAAGAATTTACCAGGCATA+GGG 0.565431 8:+17792369 None:intergenic
TTCAGCATTTAATTCTGATG+TGG 0.577584 8:-17790748 MsG0880043021.01.T01:CDS
GGTAAGAATTTACCAGGCAT+AGG 0.578613 8:+17792368 None:intergenic
GCAGTTAACAATCTACCTAT+GGG 0.581803 8:-17791687 MsG0880043021.01.T01:intron
CGAATGGGGTGGAAATTGCT+CGG 0.583725 8:+17791564 None:intergenic
AATCGGGCAAAGATAGATCC+CGG 0.583846 8:-17793112 MsG0880043021.01.T01:CDS
TGGTGGAAACTAGGCTTAGG+TGG 0.585719 8:-17793835 MsG0880043021.01.T01:CDS
CCATTGGCTCCAATACAGAA+TGG 0.587395 8:-17792398 MsG0880043021.01.T01:CDS
ATGCCCATGGAGTCCATATG+AGG 0.589725 8:+17791621 None:intergenic
ATACCAAGAGCTGTAAATCC+GGG 0.591106 8:+17793094 None:intergenic
AGAATTTACCAGGCATAGGG+TGG 0.592466 8:+17792372 None:intergenic
GACAACATTAGAGAGAGTTA+GGG 0.593758 8:-17793879 MsG0880043021.01.T01:CDS
AGGAGAGTAGATCAAATGGA+GGG 0.597049 8:-17793773 MsG0880043021.01.T01:CDS
GCTCCAATGATTCCACAAAA+CGG 0.598722 8:-17790888 MsG0880043021.01.T01:CDS
CTATACTGTAACCGAAGTGT+AGG 0.601952 8:-17788752 MsG0880043021.01.T01:three_prime_UTR
ACTCACTGGCATTTCTGAGA+CGG 0.603360 8:+17790854 None:intergenic
AGCAACATGTCTGAATCAGA+TGG 0.604874 8:+17789897 None:intergenic
ATATATCTATTATTAGGGAG+AGG 0.605655 8:-17788634 MsG0880043021.01.T01:three_prime_UTR
CAGCCTCATATGGACTCCAT+GGG 0.606700 8:-17791624 MsG0880043021.01.T01:CDS
GAAGTGTCCCATGCCTCCAA+AGG 0.607338 8:-17792423 MsG0880043021.01.T01:CDS
GCCAGTGAGTCCAACATCGG+TGG 0.616717 8:-17790841 MsG0880043021.01.T01:CDS
GATCGCTGGATCAAATTCAG+TGG 0.616974 8:-17790674 MsG0880043021.01.T01:CDS
TGTAGTACTGGATATCCCAT+AGG 0.618753 8:+17791672 None:intergenic
CAGAATTCATCCGAATGGGG+TGG 0.618756 8:+17791553 None:intergenic
AGTGTGGCAAAAGTTAGAAG+AGG 0.618952 8:-17792543 MsG0880043021.01.T01:CDS
GGAGAAACCTTCAACTTAAG+GGG 0.620998 8:-17788865 MsG0880043021.01.T01:exon
TAGGAGAGTAGATCAAATGG+AGG 0.629447 8:-17793774 MsG0880043021.01.T01:CDS
TCCATGCTCTCAATCAGATG+AGG 0.630730 8:-17788886 MsG0880043021.01.T01:CDS
GGAGCTCTAGGAAACTATCC+GGG 0.632052 8:-17789933 MsG0880043021.01.T01:CDS
GTCAAATCACTAGAGGTAGA+GGG 0.633501 8:-17793748 MsG0880043021.01.T01:CDS
GGAGAGTAGATCAAATGGAG+GGG 0.636293 8:-17793772 MsG0880043021.01.T01:CDS
TCCCAAGTTTGGTAAATCTG+CGG 0.636909 8:+17790629 None:intergenic
AACATTAGAGAGAGTTAGGG+TGG 0.641244 8:-17793876 MsG0880043021.01.T01:CDS
ATGACAACTTGACATGCCCA+TGG 0.641314 8:+17791608 None:intergenic
AGACAAGGCTGCCTACACTT+CGG 0.644909 8:+17788741 None:intergenic
CCAACATCGGTGGCATCGAG+TGG 0.649411 8:-17790831 MsG0880043021.01.T01:CDS
GAAACCTTCAACTTAAGGGG+AGG 0.654911 8:-17788862 MsG0880043021.01.T01:exon
ACCTATAGTAGAAAAGATGG+TGG 0.661560 8:-17793852 MsG0880043021.01.T01:CDS
TCCCAGAATTCATCCGAATG+GGG 0.663350 8:+17791550 None:intergenic
AATGCCAGTGAGTCCAACAT+CGG 0.681951 8:-17790844 MsG0880043021.01.T01:CDS
GACATGTAGAGAGAAGACCT+GGG 0.682777 8:-17793808 MsG0880043021.01.T01:CDS
ATATATTATATAATAAGACA+AGG 0.686278 8:+17788726 None:intergenic
GAGGGGAGTCAAATCACTAG+AGG 0.697599 8:-17793755 MsG0880043021.01.T01:CDS
TCATCTGATTGAGAGCATGG+AGG 0.698983 8:+17788888 None:intergenic
GCAGATTTACCAAACTTGGG+AGG 0.702451 8:-17790627 MsG0880043021.01.T01:intron
GTCCATATGAGGCTGACCTG+CGG 0.704335 8:+17791632 None:intergenic
GGGCATGTCAAGTTGTCATG+TGG 0.709494 8:-17791604 MsG0880043021.01.T01:CDS
ACATGTAGAGAGAAGACCTG+GGG 0.735906 8:-17793807 MsG0880043021.01.T01:CDS
GAGCCATATCAGGAGCACTG+TGG 0.761103 8:+17790907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAAAAAATACCTTT+CGG - Chr8:17790624-17790643 MsG0880043021.01.T01:intron 10.0%
!! AGAAATAACAAAATAAAATA+TGG - Chr8:17793363-17793382 MsG0880043021.01.T01:CDS 10.0%
!! ATATATTATATAATAAGACA+AGG + Chr8:17793714-17793733 None:intergenic 10.0%
!! TTATCAAGTAAAATTAATAA+AGG + Chr8:17793258-17793277 None:intergenic 10.0%
!!! TATTTTGTTATTTCTTTTAA+AGG + Chr8:17793358-17793377 None:intergenic 10.0%
!! AATATATTTCATTATTACTG+TGG - Chr8:17793727-17793746 MsG0880043021.01.T01:CDS 15.0%
!! ATTAGAATGCAAAATATAAA+TGG + Chr8:17789391-17789410 None:intergenic 15.0%
!! CATCAAAGTAATTAAAATTT+AGG + Chr8:17792629-17792648 None:intergenic 15.0%
!! TAAATTTATATATTGTTGCT+TGG - Chr8:17793874-17793893 MsG0880043021.01.T01:CDS 15.0%
!! TCAAAAGTAATAAGATTTAT+TGG + Chr8:17791209-17791228 None:intergenic 15.0%
!! TGAAAATTTCCTAAAAATAT+AGG - Chr8:17793230-17793249 MsG0880043021.01.T01:intron 15.0%
!! TTGAGATATATCTATTATTA+GGG - Chr8:17793798-17793817 MsG0880043021.01.T01:CDS 15.0%
!!! AAGTTTGTATTCATTTTTAA+AGG + Chr8:17789836-17789855 None:intergenic 15.0%
!!! TATCAATTTCAAGTATATAA+TGG - Chr8:17792330-17792349 MsG0880043021.01.T01:intron 15.0%
!!! TCAAAAGATACAAAATATTT+TGG - Chr8:17792261-17792280 MsG0880043021.01.T01:intron 15.0%
!!! TTTGAGATATATCTATTATT+AGG - Chr8:17793797-17793816 MsG0880043021.01.T01:CDS 15.0%
!! AAACAAAATGTTGATGTATT+TGG + Chr8:17791981-17792000 None:intergenic 20.0%
!! AATGCATACAAATTAAATTC+TGG - Chr8:17791023-17791042 MsG0880043021.01.T01:intron 20.0%
!! AATTATATTACAAGAATGCA+TGG + Chr8:17789812-17789831 None:intergenic 20.0%
!! ACATAACATATATAACCATT+AGG + Chr8:17790245-17790264 None:intergenic 20.0%
!! AGAATATGAAGAATATATCA+AGG + Chr8:17793466-17793485 None:intergenic 20.0%
!! AGATACATAAAATGATATCA+TGG + Chr8:17790945-17790964 None:intergenic 20.0%
!! AGTTCACTTTAATATAATCA+AGG + Chr8:17790375-17790394 None:intergenic 20.0%
!! ATATATGAATAAAGATGAAG+TGG - Chr8:17789288-17789307 MsG0880043021.01.T01:intron 20.0%
!! CTTTATTCATATATAATTGC+AGG + Chr8:17789282-17789301 None:intergenic 20.0%
!! GACAATTAAAAATGAATAGA+GGG - Chr8:17791392-17791411 MsG0880043021.01.T01:intron 20.0%
!! TAATAAGAACAATCTTGTAA+TGG + Chr8:17790530-17790549 None:intergenic 20.0%
!! TCTCAAATATAAGCAAAAAA+TGG - Chr8:17791919-17791938 MsG0880043021.01.T01:intron 20.0%
!! TGAAAAACTAGTATACATTT+AGG - Chr8:17789444-17789463 MsG0880043021.01.T01:intron 20.0%
!! TGACAATTAAAAATGAATAG+AGG - Chr8:17791391-17791410 MsG0880043021.01.T01:intron 20.0%
!!! AAGTTTTTGGAATAAATCAA+AGG + Chr8:17789230-17789249 None:intergenic 20.0%
!!! AGTTTTTGGAATAAATCAAA+GGG + Chr8:17789229-17789248 None:intergenic 20.0%
!!! ATAAAGGTTCCTATATTTTT+AGG + Chr8:17793242-17793261 None:intergenic 20.0%
!!! CATGATAGTTTTTAGAATTT+AGG + Chr8:17790407-17790426 None:intergenic 20.0%
!!! GAACTAAATATACCTTTTTA+TGG - Chr8:17788943-17788962 MsG0880043021.01.T01:intron 20.0%
!!! TATAGATTTTTCCAAATCTT+TGG - Chr8:17790460-17790479 MsG0880043021.01.T01:intron 20.0%
!!! TTTATTCCAAAAACTTTTGT+AGG - Chr8:17789234-17789253 MsG0880043021.01.T01:intron 20.0%
!!! TTTTAAAAAAAGACTGCATA+AGG + Chr8:17790604-17790623 None:intergenic 20.0%
! AACATATTACAAATTTCGCA+AGG - Chr8:17793085-17793104 MsG0880043021.01.T01:intron 25.0%
! ACATATTACAAATTTCGCAA+GGG - Chr8:17793086-17793105 MsG0880043021.01.T01:intron 25.0%
! AGGAATATGAAGAAAAGATA+AGG + Chr8:17790699-17790718 None:intergenic 25.0%
! AGTCAAGTGTTTATATCATA+AGG - Chr8:17792714-17792733 MsG0880043021.01.T01:intron 25.0%
! ATATATCTATTATTAGGGAG+AGG - Chr8:17793803-17793822 MsG0880043021.01.T01:CDS 25.0%
! ATATCATGGTATGATTTGAT+TGG + Chr8:17790931-17790950 None:intergenic 25.0%
! ATATTTGTATATTCATCGTC+AGG + Chr8:17793207-17793226 None:intergenic 25.0%
! ATTGCAATATCATGTGTTAT+TGG + Chr8:17790342-17790361 None:intergenic 25.0%
! CATTGTCATATAGATATTTG+TGG + Chr8:17790968-17790987 None:intergenic 25.0%
! GAACATACAAAATCTTAAGT+AGG + Chr8:17792385-17792404 None:intergenic 25.0%
! GATTGTTCTTATTATGATAG+TGG - Chr8:17790536-17790555 MsG0880043021.01.T01:intron 25.0%
! GCAAACTTAGAAATAGTTAA+TGG + Chr8:17792292-17792311 None:intergenic 25.0%
! TATCTATATGACAATGTGAA+TGG - Chr8:17790972-17790991 MsG0880043021.01.T01:intron 25.0%
! TCAAATAAGTTAATCGAAAC+AGG - Chr8:17792941-17792960 MsG0880043021.01.T01:intron 25.0%
! TCCTAAAATGACAACTAAAA+AGG + Chr8:17791164-17791183 None:intergenic 25.0%
! TGTAATTCATTTGATGCATT+TGG - Chr8:17793844-17793863 MsG0880043021.01.T01:CDS 25.0%
! TGTTCTACAAATCCATAAAA+AGG + Chr8:17788958-17788977 None:intergenic 25.0%
! TTTGAAGACGATAAGTAAAT+AGG - Chr8:17791347-17791366 MsG0880043021.01.T01:intron 25.0%
!! AAATTCTTTAGAAGAGTCTA+TGG + Chr8:17789631-17789650 None:intergenic 25.0%
!! ACTTATTTGAGTTTATCTAC+TGG + Chr8:17792931-17792950 None:intergenic 25.0%
!! ATAAGATTTATTGGTTGTCT+TGG + Chr8:17791200-17791219 None:intergenic 25.0%
!! ATCTGTTGTTTATTCATCAA+CGG + Chr8:17793045-17793064 None:intergenic 25.0%
!! ATGCTTTTATTAATTCAGTG+TGG - Chr8:17789878-17789897 MsG0880043021.01.T01:CDS 25.0%
!! ATTATATTTGGAGTGAAGTT+AGG + Chr8:17790439-17790458 None:intergenic 25.0%
!! CAAATGGTGTTAAAGAATAA+TGG + Chr8:17790722-17790741 None:intergenic 25.0%
!! CTTTTTAAATATATAGACCC+TGG - Chr8:17791851-17791870 MsG0880043021.01.T01:intron 25.0%
!! TGATGTTTAAGTTTATCTAC+TGG + Chr8:17789668-17789687 None:intergenic 25.0%
!!! ATTTCTCTCTGGAATAAATA+AGG - Chr8:17791287-17791306 MsG0880043021.01.T01:intron 25.0%
!!! CAATTTTAGTCTAACATAGT+AGG + Chr8:17789941-17789960 None:intergenic 25.0%
!!! GATGTATTTGGTTCAAATTT+TGG + Chr8:17791969-17791988 None:intergenic 25.0%
!!! TCAAAGAAAGTTGATGTATT+TGG - Chr8:17791942-17791961 MsG0880043021.01.T01:intron 25.0%
!!! TCCTTTTTAGTTGTCATTTT+AGG - Chr8:17791160-17791179 MsG0880043021.01.T01:intron 25.0%
!!! TTTCTCTCTGGAATAAATAA+GGG - Chr8:17791288-17791307 MsG0880043021.01.T01:intron 25.0%
!!! TTTTTGCTTATATTTGAGAC+CGG + Chr8:17791918-17791937 None:intergenic 25.0%
AAAATCTTAAGTAGGATCCA+AGG + Chr8:17792377-17792396 None:intergenic 30.0%
AACAAGGTTTCTAAACCTAA+TGG - Chr8:17790227-17790246 MsG0880043021.01.T01:intron 30.0%
AACACATGATATTGCAATTG+TGG - Chr8:17790344-17790363 MsG0880043021.01.T01:intron 30.0%
AAGAAAAGATAAGGCATAGA+AGG + Chr8:17790690-17790709 None:intergenic 30.0%
AATAAATTACCTCCCAAGTT+TGG + Chr8:17791822-17791841 None:intergenic 30.0%
ACAATGACATCAATTGTTAG+AGG + Chr8:17790296-17790315 None:intergenic 30.0%
ACACGGAAAATCATTTATGA+GGG + Chr8:17789698-17789717 None:intergenic 30.0%
ACTTCATTAAATATGACGAG+AGG + Chr8:17790095-17790114 None:intergenic 30.0%
AGAAAAGATAAGGCATAGAA+GGG + Chr8:17790689-17790708 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - Chr8:17788747-17788766 MsG0880043021.01.T01:three_prime_UTR 30.0%
AGGTCCAGAATTTAATAGAA+AGG - Chr8:17789254-17789273 MsG0880043021.01.T01:intron 30.0%
ATAAACACTTGACTATGTTG+TGG + Chr8:17792708-17792727 None:intergenic 30.0%
ATAACACAGGTTTATCCATT+TGG - Chr8:17789727-17789746 MsG0880043021.01.T01:intron 30.0%
ATGATAGCAAAAAGGTTTCA+CGG - Chr8:17789092-17789111 MsG0880043021.01.T01:intron 30.0%
ATTAAACTGTTTATCCAGAC+AGG + Chr8:17789471-17789490 None:intergenic 30.0%
ATTTGTGGTTTATTGAAGCA+TGG - Chr8:17791500-17791519 MsG0880043021.01.T01:intron 30.0%
CTTCATTAAATATGACGAGA+GGG + Chr8:17790094-17790113 None:intergenic 30.0%
CTTGTTGCACATTAATTCTT+AGG - Chr8:17793605-17793624 MsG0880043021.01.T01:intron 30.0%
GATTGTCAACTAAATCTTGT+AGG + Chr8:17792664-17792683 None:intergenic 30.0%
GCACATTAATTCTTAGGTTA+GGG - Chr8:17793611-17793630 MsG0880043021.01.T01:intron 30.0%
GTTTCTGTTATAGTTTCTCT+AGG + Chr8:17788718-17788737 None:intergenic 30.0%
TAAAAATGAATAGAGGGAGT+AGG - Chr8:17791398-17791417 MsG0880043021.01.T01:intron 30.0%
TAATAAGCGCTTAACTAATC+TGG + Chr8:17791885-17791904 None:intergenic 30.0%
TAATTCTGATGTGGTAAGTT+CGG - Chr8:17791698-17791717 MsG0880043021.01.T01:intron 30.0%
TCATTAGCTATTAGAGCTTA+TGG - Chr8:17792826-17792845 MsG0880043021.01.T01:intron 30.0%
TGCACATTAATTCTTAGGTT+AGG - Chr8:17793610-17793629 MsG0880043021.01.T01:intron 30.0%
TGGTTAAAACTCTACTGAAT+CGG - Chr8:17789308-17789327 MsG0880043021.01.T01:intron 30.0%
TTAAACTGTTTATCCAGACA+GGG + Chr8:17789470-17789489 None:intergenic 30.0%
TTAAATATATAGACCCTGGT+TGG - Chr8:17791855-17791874 MsG0880043021.01.T01:intron 30.0%
TTAGGTTAGGGAGAAAATTT+AGG - Chr8:17793623-17793642 MsG0880043021.01.T01:intron 30.0%
TTCAAGCAATGATAGCAAAA+AGG - Chr8:17789084-17789103 MsG0880043021.01.T01:intron 30.0%
TTCAGCATTTAATTCTGATG+TGG - Chr8:17791689-17791708 MsG0880043021.01.T01:intron 30.0%
TTCATTAAATATGACGAGAG+GGG + Chr8:17790093-17790112 None:intergenic 30.0%
TTCTTAACTGTCCAAAGATT+TGG + Chr8:17790474-17790493 None:intergenic 30.0%
TTGATTTCCATGTTACCAAA+TGG + Chr8:17789745-17789764 None:intergenic 30.0%
TTGCGAAAATACATCATGAT+AGG + Chr8:17792455-17792474 None:intergenic 30.0%
! AAAGCATCAATTACAAAGCA+AGG + Chr8:17789865-17789884 None:intergenic 30.0%
! AACTACAATCAATGCACTTT+TGG - Chr8:17790268-17790287 MsG0880043021.01.T01:intron 30.0%
! AGTTACTTATATTTGAGACC+CGG - Chr8:17792005-17792024 MsG0880043021.01.T01:intron 30.0%
! ATGGTGTTAAAGAATAATGG+AGG + Chr8:17790719-17790738 None:intergenic 30.0%
! ATTTTATGCCTTGATCATTG+TGG - Chr8:17791106-17791125 MsG0880043021.01.T01:intron 30.0%
! GTTGGCAATGTTTTCAATAT+TGG - Chr8:17788823-17788842 MsG0880043021.01.T01:three_prime_UTR 30.0%
! TCATTTCATCTATTTCTCTC+TGG - Chr8:17791276-17791295 MsG0880043021.01.T01:intron 30.0%
!! TGGATAAACCTGTGTTATTT+AGG + Chr8:17789725-17789744 None:intergenic 30.0%
!! TGTGTTATTTAGGTAAGACA+CGG + Chr8:17789715-17789734 None:intergenic 30.0%
AAATATAAATGGCATGCCTG+AGG + Chr8:17789380-17789399 None:intergenic 35.0%
AAGTGAATTGCTCATGCTAA+AGG + Chr8:17793168-17793187 None:intergenic 35.0%
AATAGAGGGAGTAGGTTAAT+TGG - Chr8:17791406-17791425 MsG0880043021.01.T01:intron 35.0%
AATCTGCGGTTAAATCTGAT+AGG + Chr8:17791797-17791816 None:intergenic 35.0%
ACCTATAGTAGAAAAGATGG+TGG - Chr8:17788585-17788604 MsG0880043021.01.T01:three_prime_UTR 35.0%
AGAAACAGATCACAAGACAA+AGG + Chr8:17789203-17789222 None:intergenic 35.0%
AGACTGTTTAAGAGAGCTTA+TGG + Chr8:17792894-17792913 None:intergenic 35.0%
AGGAGAAACCTTCAACTTAA+GGG - Chr8:17793571-17793590 MsG0880043021.01.T01:intron 35.0%
AGTAAAACCTAAGTGCATGA+CGG + Chr8:17791132-17791151 None:intergenic 35.0%
AGTGAATTGCTCATGCTAAA+GGG + Chr8:17793167-17793186 None:intergenic 35.0%
ATATTTCCGATGCAGTGAAA+GGG + Chr8:17791638-17791657 None:intergenic 35.0%
ATGCTTCGACCCTATTAAAA+GGG + Chr8:17790204-17790223 None:intergenic 35.0%
ATTGGATAACGCTTTCAATC+AGG + Chr8:17790324-17790343 None:intergenic 35.0%
ATTGTTTGGATGTTCACTCT+TGG + Chr8:17789020-17789039 None:intergenic 35.0%
CATAAGGCTCAAATATTCTC+AGG + Chr8:17790588-17790607 None:intergenic 35.0%
CCACTGAAATTAAAACCACA+AGG + Chr8:17793506-17793525 None:intergenic 35.0%
CTTTGGACAGTTAAGAAGTT+TGG - Chr8:17790477-17790496 MsG0880043021.01.T01:intron 35.0%
GACAACATTAGAGAGAGTTA+GGG - Chr8:17788558-17788577 MsG0880043021.01.T01:three_prime_UTR 35.0%
GACAACTAAAAAGGAACTGA+GGG + Chr8:17791155-17791174 None:intergenic 35.0%
GACACGGAAAATCATTTATG+AGG + Chr8:17789699-17789718 None:intergenic 35.0%
GCAGTTAACAATCTACCTAT+GGG - Chr8:17790750-17790769 MsG0880043021.01.T01:CDS 35.0%
GCTCTGTGAACAACTAAAAA+AGG - Chr8:17793134-17793153 MsG0880043021.01.T01:CDS 35.0%
GGCACCTTTCTATTAAATTC+TGG + Chr8:17789261-17789280 None:intergenic 35.0%
GGGTCTCAAATATAAGTAAC+TGG + Chr8:17792006-17792025 None:intergenic 35.0%
GGTTAAAACTCTACTGAATC+GGG - Chr8:17789309-17789328 MsG0880043021.01.T01:intron 35.0%
GTAAGAATTTACCAGGCATA+GGG + Chr8:17790071-17790090 None:intergenic 35.0%
GTAGGTTAATTGGTTGAATG+CGG - Chr8:17791416-17791435 MsG0880043021.01.T01:intron 35.0%
GTGTCTTACCTAAATAACAC+AGG - Chr8:17789714-17789733 MsG0880043021.01.T01:intron 35.0%
TAACAGTTCTCCACAGATAA+GGG + Chr8:17792217-17792236 None:intergenic 35.0%
TACATAAGCACTTACTACTC+CGG + Chr8:17792027-17792046 None:intergenic 35.0%
TATACTTGCATCTTACCTTG+TGG - Chr8:17793488-17793507 MsG0880043021.01.T01:intron 35.0%
TCATCTGTTGTAGAGTCTAT+AGG + Chr8:17793004-17793023 None:intergenic 35.0%
TCTGAATCAGATGGCAAAAA+TGG + Chr8:17792534-17792553 None:intergenic 35.0%
TGACAACATTAGAGAGAGTT+AGG - Chr8:17788557-17788576 MsG0880043021.01.T01:three_prime_UTR 35.0%
TGACAACTAAAAAGGAACTG+AGG + Chr8:17791156-17791175 None:intergenic 35.0%
TGCAGTTAACAATCTACCTA+TGG - Chr8:17790749-17790768 MsG0880043021.01.T01:CDS 35.0%
TTAACTGCACTGCAAACAAA+TGG + Chr8:17790738-17790757 None:intergenic 35.0%
TTGTTTGGATGTTCACTCTT+GGG + Chr8:17789019-17789038 None:intergenic 35.0%
! AATCACCCTCCCTTTTAATA+GGG - Chr8:17790192-17790211 MsG0880043021.01.T01:intron 35.0%
! ATAAGACTTGGTTGTTGAGT+TGG - Chr8:17788805-17788824 MsG0880043021.01.T01:three_prime_UTR 35.0%
! ATGTCATCATCTAGCTTACT+TGG - Chr8:17793654-17793673 MsG0880043021.01.T01:intron 35.0%
! GGTTTATCCATTTGGTAACA+TGG - Chr8:17789735-17789754 MsG0880043021.01.T01:intron 35.0%
! TCAAGTTGTCATGTGGTTAA+TGG - Chr8:17790840-17790859 MsG0880043021.01.T01:CDS 35.0%
! TCCACCATCTTTTCTACTAT+AGG + Chr8:17788589-17788608 None:intergenic 35.0%
! TCTGGACCTACAAAAGTTTT+TGG + Chr8:17789243-17789262 None:intergenic 35.0%
! TTGTCCTCTGAAAAGAAGAA+TGG - Chr8:17792140-17792159 MsG0880043021.01.T01:intron 35.0%
!! AGTAATTTGCTCTGCATTTG+TGG - Chr8:17791485-17791504 MsG0880043021.01.T01:intron 35.0%
!! GCATTTTGAAAATCACACCT+TGG - Chr8:17792357-17792376 MsG0880043021.01.T01:intron 35.0%
!! TACCTTTCGGTGTTAAATGA+CGG - Chr8:17790637-17790656 MsG0880043021.01.T01:CDS 35.0%
!! TAGAAAAGATGGTGGAAACT+AGG - Chr8:17788593-17788612 MsG0880043021.01.T01:three_prime_UTR 35.0%
!!! CCTTGTGGTTTTAATTTCAG+TGG - Chr8:17793503-17793522 MsG0880043021.01.T01:intron 35.0%
!!! GCTGTTTTAATGAGCTATTC+TGG - Chr8:17789587-17789606 MsG0880043021.01.T01:intron 35.0%
AACATTAGAGAGAGTTAGGG+TGG - Chr8:17788561-17788580 MsG0880043021.01.T01:three_prime_UTR 40.0%
AACCGCAGATTTACCAAACT+TGG - Chr8:17791806-17791825 MsG0880043021.01.T01:intron 40.0%
ACATAAGCACTTACTACTCC+GGG + Chr8:17792026-17792045 None:intergenic 40.0%
ACCGCAGATTTACCAAACTT+GGG - Chr8:17791807-17791826 MsG0880043021.01.T01:intron 40.0%
ACTAATCTGGTTAACCAACC+AGG + Chr8:17791872-17791891 None:intergenic 40.0%
AGCTAGGAGAGTAGATCAAA+TGG - Chr8:17788660-17788679 MsG0880043021.01.T01:three_prime_UTR 40.0%
AGCTCTTGGTATGCATCTTT+AGG - Chr8:17789354-17789373 MsG0880043021.01.T01:intron 40.0%
AGGAGAGTAGATCAAATGGA+GGG - Chr8:17788664-17788683 MsG0880043021.01.T01:three_prime_UTR 40.0%
AGTCAAATCACTAGAGGTAG+AGG - Chr8:17788688-17788707 MsG0880043021.01.T01:three_prime_UTR 40.0%
AGTGTGGCAAAAGTTAGAAG+AGG - Chr8:17789894-17789913 MsG0880043021.01.T01:CDS 40.0%
ATACCAAGAGCTGTAAATCC+GGG + Chr8:17789346-17789365 None:intergenic 40.0%
ATCCGTCATTTAACACCGAA+AGG + Chr8:17790642-17790661 None:intergenic 40.0%
ATTCCCAGAATTCATCCGAA+TGG + Chr8:17790892-17790911 None:intergenic 40.0%
CAAATATTCTCAGGCCATCA+AGG + Chr8:17790579-17790598 None:intergenic 40.0%
CATACCAAGAGCTGTAAATC+CGG + Chr8:17789347-17789366 None:intergenic 40.0%
CATGCTTCGACCCTATTAAA+AGG + Chr8:17790205-17790224 None:intergenic 40.0%
CGCTTATTATATACTCCCTC+CGG - Chr8:17791896-17791915 MsG0880043021.01.T01:intron 40.0%
CTAACAGTTCTCCACAGATA+AGG + Chr8:17792218-17792237 None:intergenic 40.0%
CTAATCTGGTTAACCAACCA+GGG + Chr8:17791871-17791890 None:intergenic 40.0%
CTACCTATATCCTGTTGATC+TGG + Chr8:17792573-17792592 None:intergenic 40.0%
CTATACTGTAACCGAAGTGT+AGG - Chr8:17793685-17793704 MsG0880043021.01.T01:intron 40.0%
CTTTCCTTTCTTGTCCTTGA+TGG - Chr8:17790562-17790581 MsG0880043021.01.T01:intron 40.0%
GAGGAGAAACCTTCAACTTA+AGG - Chr8:17793570-17793589 MsG0880043021.01.T01:intron 40.0%
GATATTTCCGATGCAGTGAA+AGG + Chr8:17791639-17791658 None:intergenic 40.0%
GCATCAGTTGTGTGATTGTT+TGG + Chr8:17789034-17789053 None:intergenic 40.0%
GCATCGGAAATATCAGGAAT+GGG - Chr8:17791645-17791664 MsG0880043021.01.T01:CDS 40.0%
GCTCCAATGATTCCACAAAA+CGG - Chr8:17791549-17791568 MsG0880043021.01.T01:CDS 40.0%
GGAGAAACCTTCAACTTAAG+GGG - Chr8:17793572-17793591 MsG0880043021.01.T01:intron 40.0%
GGCACCTATAGTAGAAAAGA+TGG - Chr8:17788582-17788601 MsG0880043021.01.T01:three_prime_UTR 40.0%
GGTAAGAATTTACCAGGCAT+AGG + Chr8:17790072-17790091 None:intergenic 40.0%
GGTTTATTGAAGCATGGTGA+TGG - Chr8:17791506-17791525 MsG0880043021.01.T01:intron 40.0%
GTCAAATCACTAGAGGTAGA+GGG - Chr8:17788689-17788708 MsG0880043021.01.T01:three_prime_UTR 40.0%
GTGAATTGCTCATGCTAAAG+GGG + Chr8:17793166-17793185 None:intergenic 40.0%
GTTGAACTCTTTGCAGATCT+TGG - Chr8:17792483-17792502 MsG0880043021.01.T01:CDS 40.0%
TAGGAGAGTAGATCAAATGG+AGG - Chr8:17788663-17788682 MsG0880043021.01.T01:three_prime_UTR 40.0%
TCATTTCCCTTTCACTGCAT+CGG - Chr8:17791629-17791648 MsG0880043021.01.T01:CDS 40.0%
TCCCAAGTTTGGTAAATCTG+CGG + Chr8:17791811-17791830 None:intergenic 40.0%
TCTCCAGATCAACAGGATAT+AGG - Chr8:17792567-17792586 MsG0880043021.01.T01:intron 40.0%
TGCATCGGAAATATCAGGAA+TGG - Chr8:17791644-17791663 MsG0880043021.01.T01:CDS 40.0%
TTCACTGCATCGGAAATATC+AGG - Chr8:17791639-17791658 MsG0880043021.01.T01:CDS 40.0%
TTCCCAGAATTCATCCGAAT+GGG + Chr8:17790891-17790910 None:intergenic 40.0%
TTCGACCCTATTAAAAGGGA+GGG + Chr8:17790200-17790219 None:intergenic 40.0%
TTGTATTAGGTTCGGGATGT+AGG - Chr8:17792977-17792996 MsG0880043021.01.T01:intron 40.0%
! AAGTCTTATCCCACTAGTTG+GGG + Chr8:17788794-17788813 None:intergenic 40.0%
! CAAGTCTTATCCCACTAGTT+GGG + Chr8:17788795-17788814 None:intergenic 40.0%
! GAATCACCCTCCCTTTTAAT+AGG - Chr8:17790191-17790210 MsG0880043021.01.T01:intron 40.0%
! GATGACATTGTACCGTTTTG+TGG + Chr8:17791564-17791583 None:intergenic 40.0%
! GTACCGTTTTGTGGAATCAT+TGG + Chr8:17791555-17791574 None:intergenic 40.0%
! TGCACCATTCTTCTTTTCAG+AGG + Chr8:17792147-17792166 None:intergenic 40.0%
! TGCTTATATTTGAGACCGGA+GGG + Chr8:17791914-17791933 None:intergenic 40.0%
! TGTAGTACTGGATATCCCAT+AGG + Chr8:17790768-17790787 None:intergenic 40.0%
! TTGAAGTCTTAGAGCTTGCT+TGG + Chr8:17792423-17792442 None:intergenic 40.0%
! TTGCTTATATTTGAGACCGG+AGG + Chr8:17791915-17791934 None:intergenic 40.0%
!! TCGGTGTTAAATGACGGATT+AGG - Chr8:17790643-17790662 MsG0880043021.01.T01:CDS 40.0%
AAAAGGGAGGGTGATTCCAT+AGG + Chr8:17790188-17790207 None:intergenic 45.0%
AATCGGGCAAAGATAGATCC+CGG - Chr8:17789325-17789344 MsG0880043021.01.T01:intron 45.0%
AATGCCAGTGAGTCCAACAT+CGG - Chr8:17791593-17791612 MsG0880043021.01.T01:CDS 45.0%
ACATGTAGAGAGAAGACCTG+GGG - Chr8:17788630-17788649 MsG0880043021.01.T01:three_prime_UTR 45.0%
ACCCCATTCGGATGAATTCT+GGG - Chr8:17790886-17790905 MsG0880043021.01.T01:CDS 45.0%
AGAATTTACCAGGCATAGGG+TGG + Chr8:17790068-17790087 None:intergenic 45.0%
AGGGTTGCATTAGTGTCTTG+TGG - Chr8:17793105-17793124 MsG0880043021.01.T01:CDS 45.0%
ATAGGATGCTGCTGTAGTAC+TGG + Chr8:17790780-17790799 None:intergenic 45.0%
ATCCCGAACCTAATACAACC+TGG + Chr8:17792975-17792994 None:intergenic 45.0%
ATGACAACTTGACATGCCCA+TGG + Chr8:17790832-17790851 None:intergenic 45.0%
ATTGGAGCCAATGGAACCTT+TGG + Chr8:17790033-17790052 None:intergenic 45.0%
CCAACTAGTGGGATAAGACT+TGG - Chr8:17788793-17788812 MsG0880043021.01.T01:three_prime_UTR 45.0%
CCATTCTGTATTGGAGCCAA+TGG + Chr8:17790042-17790061 None:intergenic 45.0%
CTTCGACCCTATTAAAAGGG+AGG + Chr8:17790201-17790220 None:intergenic 45.0%
GAAACCTTCAACTTAAGGGG+AGG - Chr8:17793575-17793594 MsG0880043021.01.T01:intron 45.0%
GAAACTAGGCTTAGGTGGTT+TGG - Chr8:17788607-17788626 MsG0880043021.01.T01:three_prime_UTR 45.0%
GACATGTAGAGAGAAGACCT+GGG - Chr8:17788629-17788648 MsG0880043021.01.T01:three_prime_UTR 45.0%
GAGAGGGGTAAGAATTTACC+AGG + Chr8:17790078-17790097 None:intergenic 45.0%
GATCGCTGGATCAAATTCAG+TGG - Chr8:17791763-17791782 MsG0880043021.01.T01:intron 45.0%
GCAGATTTACCAAACTTGGG+AGG - Chr8:17791810-17791829 MsG0880043021.01.T01:intron 45.0%
GCTTGAATCTCCAGATCAAC+AGG - Chr8:17792560-17792579 MsG0880043021.01.T01:intron 45.0%
GGAATCATTGGAGCCATATC+AGG + Chr8:17791543-17791562 None:intergenic 45.0%
GGAGAGTAGATCAAATGGAG+GGG - Chr8:17788665-17788684 MsG0880043021.01.T01:three_prime_UTR 45.0%
GGTTAATTGGTTGAATGCGG+AGG - Chr8:17791419-17791438 MsG0880043021.01.T01:intron 45.0%
GTATACATTTAGGCCCTGTC+TGG - Chr8:17789454-17789473 MsG0880043021.01.T01:intron 45.0%
GTTGCATTAGTGTCTTGTGG+AGG - Chr8:17793108-17793127 MsG0880043021.01.T01:CDS 45.0%
GTTTGCATCACCACAAGAGT+AGG + Chr8:17788866-17788885 None:intergenic 45.0%
TAGCAAAAAGGTTTCACGGC+AGG - Chr8:17789096-17789115 MsG0880043021.01.T01:intron 45.0%
TCCATGCTCTCAATCAGATG+AGG - Chr8:17793551-17793570 MsG0880043021.01.T01:intron 45.0%
TCCCAGAATTCATCCGAATG+GGG + Chr8:17790890-17790909 None:intergenic 45.0%
TCCTCATCTGATTGAGAGCA+TGG + Chr8:17793555-17793574 None:intergenic 45.0%
TCTGATGTGGTAAGTTCGGT+TGG - Chr8:17791702-17791721 MsG0880043021.01.T01:intron 45.0%
TCTGTGTGTTCCCTTATCTG+TGG - Chr8:17792204-17792223 MsG0880043021.01.T01:intron 45.0%
TGTGTGTGTGTGTTCACCTA+TGG - Chr8:17790169-17790188 MsG0880043021.01.T01:intron 45.0%
TTTGCAGATCTTGGAGCTCT+AGG - Chr8:17792492-17792511 MsG0880043021.01.T01:CDS 45.0%
! AATGGAACCTTTGGAGGCAT+GGG + Chr8:17790024-17790043 None:intergenic 45.0%
! ACTCACTGGCATTTCTGAGA+CGG + Chr8:17791586-17791605 None:intergenic 45.0%
! ATCTAGCTTACTTGGCATGC+AGG - Chr8:17793662-17793681 MsG0880043021.01.T01:intron 45.0%
! CCAAGTCTTATCCCACTAGT+TGG + Chr8:17788796-17788815 None:intergenic 45.0%
! GGGTGGATTCCATTCTGTAT+TGG + Chr8:17790051-17790070 None:intergenic 45.0%
! TCATCTGATTGAGAGCATGG+AGG + Chr8:17793552-17793571 None:intergenic 45.0%
!! AGATGGTGGAAACTAGGCTT+AGG - Chr8:17788599-17788618 MsG0880043021.01.T01:three_prime_UTR 45.0%
!! CCATTGGCTCCAATACAGAA+TGG - Chr8:17790039-17790058 MsG0880043021.01.T01:intron 45.0%
!! CTTTCCTCCCCTTAAGTTGA+AGG + Chr8:17793582-17793601 None:intergenic 45.0%
!! TGGAGCTCTAGGAAACTATC+CGG - Chr8:17792503-17792522 MsG0880043021.01.T01:CDS 45.0%
!! AAAAATCTATATATTATATT+TGG + Chr8:17790451-17790470 None:intergenic 5.0%
AATGGAATCCACCCTATGCC+TGG - Chr8:17790057-17790076 MsG0880043021.01.T01:intron 50.0%
AGACAAGGCTGCCTACACTT+CGG + Chr8:17793699-17793718 None:intergenic 50.0%
AGGGTCGAAGCATGAGAACA+AGG - Chr8:17790211-17790230 MsG0880043021.01.T01:intron 50.0%
ATGCCCATGGAGTCCATATG+AGG + Chr8:17790819-17790838 None:intergenic 50.0%
ATGTTGCTGACCCCAACTAG+TGG - Chr8:17788781-17788800 MsG0880043021.01.T01:three_prime_UTR 50.0%
ATTGTGGCCGTCATGCACTT+AGG - Chr8:17791122-17791141 MsG0880043021.01.T01:intron 50.0%
CACCACAAGAGTAGGAAGCA+AGG + Chr8:17788858-17788877 None:intergenic 50.0%
CACCCCATTCGGATGAATTC+TGG - Chr8:17790885-17790904 MsG0880043021.01.T01:CDS 50.0%
CAGAATTCATCCGAATGGGG+TGG + Chr8:17790887-17790906 None:intergenic 50.0%
CAGCCTCATATGGACTCCAT+GGG - Chr8:17790813-17790832 MsG0880043021.01.T01:CDS 50.0%
CAGGCCATCAAGGACAAGAA+AGG + Chr8:17790569-17790588 None:intergenic 50.0%
CATGACGGCCACAATGATCA+AGG + Chr8:17791117-17791136 None:intergenic 50.0%
CATGCCTCCAAAGGTTCCAT+TGG - Chr8:17790023-17790042 MsG0880043021.01.T01:intron 50.0%
CCAATGCGCCAGGTTGTATT+AGG - Chr8:17792964-17792983 MsG0880043021.01.T01:intron 50.0%
CCTAATACAACCTGGCGCAT+TGG + Chr8:17792967-17792986 None:intergenic 50.0%
CGAATGGGGTGGAAATTGCT+CGG + Chr8:17790876-17790895 None:intergenic 50.0%
CGAGCAATTTCCACCCCATT+CGG - Chr8:17790874-17790893 MsG0880043021.01.T01:CDS 50.0%
CGCCAGGTTGTATTAGGTTC+GGG - Chr8:17792970-17792989 MsG0880043021.01.T01:intron 50.0%
CTCCTAGCTACAAAATCCCC+AGG + Chr8:17788649-17788668 None:intergenic 50.0%
GAGGGGAGTCAAATCACTAG+AGG - Chr8:17788682-17788701 MsG0880043021.01.T01:three_prime_UTR 50.0%
GATCCCGGATTTACAGCTCT+TGG - Chr8:17789340-17789359 MsG0880043021.01.T01:intron 50.0%
GATGGCAAAAATGGCGAACC+CGG + Chr8:17792525-17792544 None:intergenic 50.0%
GCGCCAGGTTGTATTAGGTT+CGG - Chr8:17792969-17792988 MsG0880043021.01.T01:intron 50.0%
GGACATGTAGAGAGAAGACC+TGG - Chr8:17788628-17788647 MsG0880043021.01.T01:three_prime_UTR 50.0%
GGTATGCATCTTTAGGCCTC+AGG - Chr8:17789361-17789380 MsG0880043021.01.T01:intron 50.0%
TCAGCCTCATATGGACTCCA+TGG - Chr8:17790812-17790831 MsG0880043021.01.T01:CDS 50.0%
TGCCTTGCTTCCTACTCTTG+TGG - Chr8:17788853-17788872 MsG0880043021.01.T01:exon 50.0%
TGGTGGAAACTAGGCTTAGG+TGG - Chr8:17788602-17788621 MsG0880043021.01.T01:three_prime_UTR 50.0%
TGTTGCTGACCCCAACTAGT+GGG - Chr8:17788782-17788801 MsG0880043021.01.T01:three_prime_UTR 50.0%
! CAATGGAACCTTTGGAGGCA+TGG + Chr8:17790025-17790044 None:intergenic 50.0%
! GAACGGGATTTCTAGATCGC+TGG - Chr8:17791749-17791768 MsG0880043021.01.T01:intron 50.0%
! GACCTGGGGATTTTGTAGCT+AGG - Chr8:17788644-17788663 MsG0880043021.01.T01:three_prime_UTR 50.0%
! GGGCATGTCAAGTTGTCATG+TGG - Chr8:17790833-17790852 MsG0880043021.01.T01:CDS 50.0%
!! CTTGCTTGGTGTCGACAGAT+TGG + Chr8:17792409-17792428 None:intergenic 50.0%
!! GGAGCTCTAGGAAACTATCC+GGG - Chr8:17792504-17792523 MsG0880043021.01.T01:CDS 50.0%
GAGAGGTGAAGACAGCGCTT+AGG - Chr8:17793820-17793839 MsG0880043021.01.T01:CDS 55.0%
GATGCTCCTGTTGCAGACTC+AGG - Chr8:17789049-17789068 MsG0880043021.01.T01:intron 55.0%
GGACCACAGTGCTCCTGATA+TGG - Chr8:17791527-17791546 MsG0880043021.01.T01:intron 55.0%
GGAGCCAATGGAACCTTTGG+AGG + Chr8:17790030-17790049 None:intergenic 55.0%
GTCCATATGAGGCTGACCTG+CGG + Chr8:17790808-17790827 None:intergenic 55.0%
! GAAGTGTCCCATGCCTCCAA+AGG - Chr8:17790014-17790033 MsG0880043021.01.T01:intron 55.0%
!! GAGCCATATCAGGAGCACTG+TGG + Chr8:17791533-17791552 None:intergenic 55.0%
!! GGTGGAAATTGCTCGGTGCA+GGG + Chr8:17790869-17790888 None:intergenic 55.0%
AGCCGCAGGTCAGCCTCATA+TGG - Chr8:17790803-17790822 MsG0880043021.01.T01:CDS 60.0%
ATATGAGGCTGACCTGCGGC+TGG + Chr8:17790804-17790823 None:intergenic 60.0%
CCACTCGATGCCACCGATGT+TGG + Chr8:17791609-17791628 None:intergenic 60.0%
GAAATCCCGTTCCCGCCATC+CGG + Chr8:17791741-17791760 None:intergenic 60.0%
GCCACCGATGTTGGACTCAC+TGG + Chr8:17791600-17791619 None:intergenic 60.0%
GCCAGTGAGTCCAACATCGG+TGG - Chr8:17791596-17791615 MsG0880043021.01.T01:CDS 60.0%
GCTGAGCCTGAGTCTGCAAC+AGG + Chr8:17789058-17789077 None:intergenic 60.0%
GGTTGGACTGCAGCTTGCAC+CGG - Chr8:17791719-17791738 MsG0880043021.01.T01:intron 60.0%
TCGAAACAGGCCAATGCGCC+AGG - Chr8:17792954-17792973 MsG0880043021.01.T01:intron 60.0%
! CCAACATCGGTGGCATCGAG+TGG - Chr8:17791606-17791625 MsG0880043021.01.T01:CDS 60.0%
!! GGGTGGAAATTGCTCGGTGC+AGG + Chr8:17790870-17790889 None:intergenic 60.0%
CAGCATCCTATGCCAGCCGC+AGG - Chr8:17790789-17790808 MsG0880043021.01.T01:CDS 65.0%
CTGCAGCTTGCACCGGATGG+CGG - Chr8:17791726-17791745 MsG0880043021.01.T01:intron 65.0%
GGACTGCAGCTTGCACCGGA+TGG - Chr8:17791723-17791742 MsG0880043021.01.T01:intron 65.0%
TGCAGCTTGCACCGGATGGC+GGG - Chr8:17791727-17791746 MsG0880043021.01.T01:intron 65.0%
!! CTTGCACCGGATGGCGGGAA+CGG - Chr8:17791732-17791751 MsG0880043021.01.T01:intron 65.0%
!! TTGCACCGGATGGCGGGAAC+GGG - Chr8:17791733-17791752 MsG0880043021.01.T01:intron 65.0%
GGCTGACCTGCGGCTGGCAT+AGG + Chr8:17790798-17790817 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 17788556 17793903 17788556 ID=MsG0880043021.01;Name=MsG0880043021.01
Chr8 mRNA 17788556 17793903 17788556 ID=MsG0880043021.01.T01;Parent=MsG0880043021.01;Name=MsG0880043021.01.T01;_AED=0.40;_eAED=0.48;_QI=0|0.85|0.87|1|1|1|8|313|429
Chr8 exon 17788556 17788936 17788556 ID=MsG0880043021.01.T01:exon:4716;Parent=MsG0880043021.01.T01
Chr8 exon 17789871 17789960 17789871 ID=MsG0880043021.01.T01:exon:4715;Parent=MsG0880043021.01.T01
Chr8 exon 17790628 17790941 17790628 ID=MsG0880043021.01.T01:exon:4714;Parent=MsG0880043021.01.T01
Chr8 exon 17791546 17791705 17791546 ID=MsG0880043021.01.T01:exon:4713;Parent=MsG0880043021.01.T01
Chr8 exon 17792381 17792563 17792381 ID=MsG0880043021.01.T01:exon:4712;Parent=MsG0880043021.01.T01
Chr8 exon 17793098 17793203 17793098 ID=MsG0880043021.01.T01:exon:4711;Parent=MsG0880043021.01.T01
Chr8 exon 17793330 17793485 17793330 ID=MsG0880043021.01.T01:exon:4710;Parent=MsG0880043021.01.T01
Chr8 exon 17793691 17793903 17793691 ID=MsG0880043021.01.T01:exon:4709;Parent=MsG0880043021.01.T01
Chr8 CDS 17793691 17793903 17793691 ID=MsG0880043021.01.T01:cds;Parent=MsG0880043021.01.T01
Chr8 CDS 17793330 17793485 17793330 ID=MsG0880043021.01.T01:cds;Parent=MsG0880043021.01.T01
Chr8 CDS 17793098 17793203 17793098 ID=MsG0880043021.01.T01:cds;Parent=MsG0880043021.01.T01
Chr8 CDS 17792381 17792563 17792381 ID=MsG0880043021.01.T01:cds;Parent=MsG0880043021.01.T01
Chr8 CDS 17791546 17791705 17791546 ID=MsG0880043021.01.T01:cds;Parent=MsG0880043021.01.T01
Chr8 CDS 17790628 17790941 17790628 ID=MsG0880043021.01.T01:cds;Parent=MsG0880043021.01.T01
Chr8 CDS 17789871 17789960 17789871 ID=MsG0880043021.01.T01:cds;Parent=MsG0880043021.01.T01
Chr8 CDS 17788869 17788936 17788869 ID=MsG0880043021.01.T01:cds;Parent=MsG0880043021.01.T01
Chr8 three_prime_UTR 17788556 17788868 17788556 ID=MsG0880043021.01.T01:three_prime_utr;Parent=MsG0880043021.01.T01
Gene Sequence

>MsG0880043021.01.T01

ATGACAACATTAGAGAGAGTTAGGGTGGCACCTATAGTAGAAAAGATGGTGGAAACTAGGCTTAGGTGGTTTGGACATGTAGAGAGAAGACCTGGGGATTTTGTAGCTAGGAGAGTAGATCAAATGGAGGGGAGTCAAATCACTAGAGGTAGAGGGAGACCTAGAGAAACTATAACAGAAACTGTTAAGAAAGATCTAGAGATTAATGAGTTGAACACAGAAGAATTACAGTCATCAACTCAAGCTTCACACGAGCCCAAGAGTGAACATCCAAACAATCACACAACTGATGCTCCTGTTGCAGACTCAGGCTCAGCATCTGCTTCAAGCAATGATAGCAAAAAGGTTTCACGGCAGGATATTGAGCTTGTCCAGAATTTAATAGAAAGGTGCCTGCAATTATATATGAATAAAGATGAAGTGGTTAAAACTCTACTGAATCGGGCAAAGATAGATCCCGGATTTACAGCTCTTGTGTGGCAAAAGTTAGAAGAGGAGAATGCTGATTTCTTCAGAGCCTACTATGTTAGACTAAAATTGAAAAAGCAGATACTTTTATTCAATCATTTACTTGAGCATCAGTATCATCTAATGAAGTGTCCCATGCCTCCAAAGGTTCCATTGGCTCCAATACAGAATGGAATCCACCCTATGCCTGTTAACAATCTACCTATGGGATATCCAGTACTACAGCAGCATCCTATGCCAGCCGCAGGTCAGCCTCATATGGACTCCATGGGCATGTCAAGTTGTCATGTGGTTAATGGAGTCCCTGCACCGAGCAATTTCCACCCCATTCGGATGAATTCTGGGAATGACATGGTGATGGACCACAGTGCTCCTGATATGGCTCCAATGATTCCACAAAACGGTACAATGTCATCCGTCTCAGAAATGCCAGTGAGTCCAACATCGGTGGCATCGAGTGGTCATTTCCCTTTCACTGCATCGGAAATATCAGGAATGGGCACAGATGCATCAGTTCTTGATTCAGCATTTAATTCTGATGTGGTAAGTTCGGTTGGACTGCAGCTTGCACCGGATGGCGGGAACGGGATTTCTAGATCGCTGGATCAAATTCAGTGGAATTTTAGCCTATCAGATTTAACCGCAGATTTACCAAACTTGGGAGATCTTGGAGCTCTAGGAAACTATCCGGGTTCGCCATTTTTGCCATCTGATTCAGACATGTTGCTTGAATCTCCAGATCAACAGGATATAGTGGATGACTTTTTTGTTAATTCTGAGCCTCCATGCTCTCAATCAGATGAGGAGAAACCTTCAACTTAA
Protein sequence

>MsG0880043021.01.T01

MTTLERVRVAPIVEKMVETRLRWFGHVERRPGDFVARRVDQMEGSQITRGRGRPRETITETVKKDLEINELNTEELQSSTQASHEPKSEHPNNHTTDAPVADSGSASASSNDSKKVSRQDIELVQNLIERCLQLYMNKDEVVKTLLNRAKIDPGFTALVWQKLEEENADFFRAYYVRLKLKKQILLFNHLLEHQYHLMKCPMPPKVPLAPIQNGIHPMPVNNLPMGYPVLQQHPMPAAGQPHMDSMGMSSCHVVNGVPAPSNFHPIRMNSGNDMVMDHSAPDMAPMIPQNGTMSSVSEMPVSPTSVASSGHFPFTASEISGMGTDASVLDSAFNSDVVSSVGLQLAPDGGNGISRSLDQIQWNFSLSDLTADLPNLGDLGALGNYPGSPFLPSDSDMLLESPDQQDIVDDFFVNSEPPCSQSDEEKPST*