Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043051.01.T01 | RHN39764.1 | 77.184 | 206 | 27 | 2 | 26 | 211 | 252 | 457 | 1.88E-101 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043051.01.T01 | A0A314KSQ4 | 55.122 | 205 | 71 | 3 | 28 | 211 | 258 | 462 | 3.73E-66 | 219 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004465.01 | MsG0880043051.01 | 0.805952 | 1.041073e-49 | 5.581194e-47 |
| MsG0180005800.01 | MsG0880043051.01 | 0.800965 | 1.125184e-48 | 5.309945e-46 |
| MsG0880043051.01 | MsG0880045639.01 | 0.807332 | 5.323841e-50 | 2.957164e-47 |
| MsG0580027211.01 | MsG0880043051.01 | 0.815796 | 7.695663e-52 | 5.358352e-49 |
| MsG0780038401.01 | MsG0880043051.01 | 0.802427 | 5.638136e-49 | 2.761222e-46 |
| MsG0780039252.01 | MsG0880043051.01 | 0.809022 | 2.323912e-50 | 1.349287e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043051.01.T01 | MTR_8g027965 | 77.184 | 206 | 27 | 2 | 26 | 211 | 252 | 457 | 2.30e-105 | 318 |
| MsG0880043051.01.T01 | MTR_8g027920 | 73.301 | 206 | 35 | 2 | 26 | 211 | 252 | 457 | 6.85e-100 | 304 |
| MsG0880043051.01.T01 | MTR_8g027970 | 69.903 | 206 | 42 | 2 | 26 | 211 | 252 | 457 | 5.38e-97 | 296 |
| MsG0880043051.01.T01 | MTR_8g027955 | 69.903 | 206 | 42 | 2 | 26 | 211 | 259 | 464 | 3.34e-95 | 292 |
| MsG0880043051.01.T01 | MTR_7g117110 | 60.096 | 208 | 59 | 3 | 28 | 211 | 254 | 461 | 1.52e-78 | 249 |
| MsG0880043051.01.T01 | MTR_8g037720 | 51.691 | 207 | 75 | 5 | 21 | 203 | 125 | 330 | 1.17e-60 | 199 |
| MsG0880043051.01.T01 | MTR_1g047730 | 67.143 | 140 | 42 | 2 | 76 | 211 | 116 | 255 | 2.08e-59 | 193 |
| MsG0880043051.01.T01 | MTR_7g117110 | 54.362 | 149 | 44 | 3 | 28 | 152 | 254 | 402 | 7.75e-46 | 159 |
| MsG0880043051.01.T01 | MTR_0102s0060 | 37.619 | 210 | 103 | 4 | 28 | 209 | 270 | 479 | 2.35e-40 | 148 |
| MsG0880043051.01.T01 | MTR_5g016320 | 36.667 | 210 | 104 | 6 | 26 | 209 | 263 | 469 | 4.89e-36 | 136 |
| MsG0880043051.01.T01 | MTR_0035s0150 | 37.563 | 197 | 99 | 5 | 30 | 207 | 266 | 457 | 6.61e-35 | 132 |
| MsG0880043051.01.T01 | MTR_4g045903 | 35.644 | 202 | 105 | 4 | 30 | 206 | 273 | 474 | 9.40e-34 | 130 |
| MsG0880043051.01.T01 | MTR_8g467000 | 35.294 | 204 | 101 | 4 | 29 | 201 | 260 | 463 | 1.72e-32 | 126 |
| MsG0880043051.01.T01 | MTR_2g081860 | 36.321 | 212 | 101 | 4 | 29 | 206 | 259 | 470 | 2.02e-32 | 126 |
| MsG0880043051.01.T01 | MTR_1g088765 | 36.667 | 210 | 103 | 6 | 26 | 205 | 111 | 320 | 1.16e-29 | 117 |
| MsG0880043051.01.T01 | MTR_1g088765 | 36.667 | 210 | 103 | 6 | 26 | 205 | 255 | 464 | 2.71e-29 | 117 |
| MsG0880043051.01.T01 | MTR_7g094190 | 41.346 | 104 | 59 | 1 | 76 | 177 | 321 | 424 | 2.65e-19 | 88.2 |
| MsG0880043051.01.T01 | MTR_7g094190 | 41.346 | 104 | 59 | 1 | 76 | 177 | 221 | 324 | 4.22e-19 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043051.01.T01 | AT2G46370 | 54.412 | 204 | 71 | 3 | 28 | 211 | 178 | 379 | 1.13e-66 | 216 |
| MsG0880043051.01.T01 | AT2G46370 | 54.412 | 204 | 71 | 3 | 28 | 211 | 257 | 458 | 3.99e-66 | 216 |
| MsG0880043051.01.T01 | AT2G46370 | 54.412 | 204 | 71 | 3 | 28 | 211 | 257 | 458 | 3.99e-66 | 216 |
| MsG0880043051.01.T01 | AT2G46370 | 54.412 | 204 | 71 | 3 | 28 | 211 | 268 | 469 | 4.06e-66 | 217 |
| MsG0880043051.01.T01 | AT4G03400 | 39.004 | 241 | 109 | 6 | 28 | 236 | 260 | 494 | 1.77e-45 | 162 |
| MsG0880043051.01.T01 | AT4G03400 | 39.004 | 241 | 109 | 6 | 28 | 236 | 260 | 494 | 1.77e-45 | 162 |
| MsG0880043051.01.T01 | AT2G14960 | 39.604 | 202 | 94 | 5 | 26 | 207 | 262 | 455 | 2.19e-38 | 142 |
| MsG0880043051.01.T01 | AT2G23170 | 37.438 | 203 | 104 | 4 | 26 | 207 | 262 | 462 | 2.02e-36 | 137 |
| MsG0880043051.01.T01 | AT1G59500 | 39.801 | 201 | 98 | 6 | 29 | 207 | 264 | 463 | 7.53e-36 | 135 |
| MsG0880043051.01.T01 | AT4G37390 | 36.715 | 207 | 102 | 6 | 28 | 207 | 265 | 469 | 1.08e-34 | 132 |
| MsG0880043051.01.T01 | AT4G27260 | 35.577 | 208 | 101 | 4 | 26 | 201 | 264 | 470 | 6.88e-34 | 130 |
| MsG0880043051.01.T01 | AT5G54510 | 36.275 | 204 | 99 | 4 | 29 | 201 | 267 | 470 | 3.61e-33 | 128 |
| MsG0880043051.01.T01 | AT5G13350 | 35.749 | 207 | 104 | 6 | 26 | 205 | 251 | 455 | 7.10e-32 | 124 |
| MsG0880043051.01.T01 | AT5G13350 | 35.749 | 207 | 104 | 6 | 26 | 205 | 251 | 455 | 7.10e-32 | 124 |
| MsG0880043051.01.T01 | AT5G13320 | 38.947 | 190 | 93 | 3 | 40 | 210 | 280 | 465 | 6.27e-31 | 122 |
| MsG0880043051.01.T01 | AT2G47750 | 36.321 | 212 | 103 | 6 | 26 | 206 | 250 | 460 | 6.61e-31 | 121 |
| MsG0880043051.01.T01 | AT5G13320 | 38.947 | 190 | 93 | 3 | 40 | 210 | 265 | 450 | 7.72e-31 | 121 |
| MsG0880043051.01.T01 | AT5G13320 | 38.947 | 190 | 93 | 3 | 40 | 210 | 265 | 450 | 7.72e-31 | 121 |
| MsG0880043051.01.T01 | AT5G13360 | 34.498 | 229 | 123 | 7 | 1 | 205 | 229 | 454 | 2.02e-30 | 120 |
| MsG0880043051.01.T01 | AT5G13360 | 34.498 | 229 | 123 | 7 | 1 | 205 | 229 | 454 | 2.02e-30 | 120 |
| MsG0880043051.01.T01 | AT5G13360 | 34.498 | 229 | 123 | 7 | 1 | 205 | 307 | 532 | 2.17e-30 | 120 |
| MsG0880043051.01.T01 | AT1G23160 | 38.220 | 191 | 93 | 5 | 40 | 210 | 268 | 453 | 2.34e-30 | 120 |
| MsG0880043051.01.T01 | AT5G13370 | 35.323 | 201 | 101 | 6 | 32 | 205 | 257 | 455 | 1.72e-28 | 115 |
| MsG0880043051.01.T01 | AT5G13380 | 36.788 | 193 | 97 | 4 | 37 | 205 | 293 | 484 | 2.04e-28 | 114 |
| MsG0880043051.01.T01 | AT1G28130 | 32.524 | 206 | 102 | 4 | 32 | 201 | 118 | 322 | 1.14e-27 | 111 |
| MsG0880043051.01.T01 | AT1G48660 | 33.163 | 196 | 106 | 5 | 31 | 205 | 252 | 443 | 1.62e-27 | 112 |
| MsG0880043051.01.T01 | AT1G48660 | 33.163 | 196 | 106 | 5 | 31 | 205 | 249 | 440 | 1.77e-27 | 112 |
| MsG0880043051.01.T01 | AT5G51470 | 34.653 | 202 | 108 | 4 | 29 | 210 | 164 | 361 | 2.11e-27 | 111 |
| MsG0880043051.01.T01 | AT1G28130 | 32.524 | 206 | 102 | 4 | 32 | 201 | 261 | 465 | 2.42e-27 | 111 |
| MsG0880043051.01.T01 | AT5G51470 | 34.653 | 202 | 108 | 4 | 29 | 210 | 254 | 451 | 3.61e-27 | 111 |
| MsG0880043051.01.T01 | AT1G48670 | 40.336 | 119 | 68 | 2 | 76 | 194 | 155 | 270 | 1.16e-24 | 102 |
| MsG0880043051.01.T01 | AT1G48670 | 40.336 | 119 | 68 | 2 | 76 | 194 | 266 | 381 | 4.27e-24 | 102 |
Find 67 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCGAATAAACCTGATTTC+TGG | 0.217720 | 8:+18206103 | None:intergenic |
| TCAGAACATTTGAACAAGTT+TGG | 0.244473 | 8:-18206963 | MsG0880043051.01.T01:CDS |
| AACATAGTGTCCTGGTTCTT+TGG | 0.254133 | 8:+18205947 | None:intergenic |
| CATAATGCTCAAGAATCTTC+TGG | 0.275515 | 8:+18205769 | None:intergenic |
| CTTGAGCATTATGTTGGATT+AGG | 0.282026 | 8:-18205759 | None:intergenic |
| CAGAACATTTGAACAAGTTT+GGG | 0.300593 | 8:-18206962 | MsG0880043051.01.T01:CDS |
| GCAAACTCAGGAGCCACTTT+AGG | 0.305629 | 8:+18206631 | None:intergenic |
| GGAGATGTAGTAAAGGTTAC+AGG | 0.323853 | 8:-18206142 | MsG0880043051.01.T01:CDS |
| CAGGACACTATGTTATCTTC+TGG | 0.331531 | 8:-18205938 | MsG0880043051.01.T01:CDS |
| ATTCCTTTGAAACAACTTGA+TGG | 0.332460 | 8:-18206568 | MsG0880043051.01.T01:CDS |
| TGGATCAAGTTAGCTAGTTC+AGG | 0.340099 | 8:+18206846 | None:intergenic |
| TTGCAGGCTTATACAGGTAT+AGG | 0.344670 | 8:-18206168 | MsG0880043051.01.T01:intron |
| TCCTTGGTGACTTCTGAGTA+TGG | 0.345474 | 8:-18206688 | MsG0880043051.01.T01:CDS |
| GATAATTTGCAGGCTTATAC+AGG | 0.362611 | 8:-18206174 | MsG0880043051.01.T01:intron |
| TTTAGACATAGCAGTTCTAA+TGG | 0.364577 | 8:+18206884 | None:intergenic |
| ATCTTGGCTATGTTAGTTCT+AGG | 0.369530 | 8:-18205845 | MsG0880043051.01.T01:CDS |
| TTCGAACAAGTCGGAGTTCA+AGG | 0.394162 | 8:+18205802 | None:intergenic |
| GTAACTCAACTCCAGAAATC+AGG | 0.394537 | 8:-18206114 | MsG0880043051.01.T01:CDS |
| AATGCATAGGATTGAGCAAT+TGG | 0.406780 | 8:-18206818 | MsG0880043051.01.T01:intron |
| CAAGTTAGCTAGTTCAGGAT+TGG | 0.437557 | 8:+18206851 | None:intergenic |
| TCTAGGAAAGTCAAAGGTAT+TGG | 0.442129 | 8:-18205828 | MsG0880043051.01.T01:CDS |
| GAAACAACTTGATGGAACTA+AGG | 0.444035 | 8:-18206560 | MsG0880043051.01.T01:CDS |
| TTCACATCAGTTAATCCAAC+TGG | 0.449966 | 8:+18206526 | None:intergenic |
| AAGATTCTTGAGCATTATGT+TGG | 0.450012 | 8:-18205765 | MsG0880043051.01.T01:CDS |
| ATTTATAGTACCTGCAGGAT+TGG | 0.460434 | 8:+18206474 | None:intergenic |
| GACATAGCAGTTCTAATGGA+TGG | 0.469517 | 8:+18206888 | None:intergenic |
| AGTATGGTGCCTCTGAAGGT+TGG | 0.470361 | 8:-18206672 | MsG0880043051.01.T01:CDS |
| GTTCCATCAAGTTGTTTCAA+AGG | 0.473335 | 8:+18206565 | None:intergenic |
| AAGTTAGCTAGTTCAGGATT+GGG | 0.474108 | 8:+18206852 | None:intergenic |
| GTATGGTGCCTCTGAAGGTT+GGG | 0.474884 | 8:-18206671 | MsG0880043051.01.T01:CDS |
| TGATTTCTGGAGTTGAGTTA+CGG | 0.482107 | 8:+18206116 | None:intergenic |
| AGGGATCATGACAGGTTCAA+TGG | 0.486740 | 8:-18206751 | MsG0880043051.01.T01:intron |
| TCTGAGTATGGTGCCTCTGA+AGG | 0.493220 | 8:-18206676 | MsG0880043051.01.T01:CDS |
| ACTATGCAGGAGAGGTTCCT+TGG | 0.503554 | 8:-18206704 | MsG0880043051.01.T01:CDS |
| AGGACACTATGTTATCTTCT+GGG | 0.504762 | 8:-18205937 | MsG0880043051.01.T01:CDS |
| GGATTAACTGATGTGAAGAT+TGG | 0.505470 | 8:-18206520 | MsG0880043051.01.T01:CDS |
| TTCAAATGTGAATCCTAAAG+TGG | 0.512193 | 8:-18206644 | MsG0880043051.01.T01:CDS |
| GAACTCCGACTTGTTCGAAA+AGG | 0.514599 | 8:-18205798 | MsG0880043051.01.T01:CDS |
| CAGAAATCAGGTTTATTCGC+AGG | 0.518549 | 8:-18206102 | MsG0880043051.01.T01:CDS |
| TCAATCCTATGCATTTCTTG+TGG | 0.525426 | 8:+18206826 | None:intergenic |
| GAAGATTGGCGAGGAGTATG+AGG | 0.530531 | 8:-18206506 | MsG0880043051.01.T01:CDS |
| ATTCATAGTAAGCAACTTGA+GGG | 0.532986 | 8:+18206593 | None:intergenic |
| TGGTGAATGTTGTACATGCT+TGG | 0.536976 | 8:-18205883 | MsG0880043051.01.T01:CDS |
| AGTTGATTTGCAACTATCAG+TGG | 0.539490 | 8:-18206038 | MsG0880043051.01.T01:CDS |
| AACATTTGAACAAGTTTGGG+AGG | 0.539596 | 8:-18206959 | MsG0880043051.01.T01:CDS |
| TGAAGCAACCCAACCTTCAG+AGG | 0.546445 | 8:+18206663 | None:intergenic |
| TCGAACAAGTCGGAGTTCAA+GGG | 0.555134 | 8:+18205803 | None:intergenic |
| TAGGCTAGGAGATGTAGTAA+AGG | 0.555730 | 8:-18206149 | MsG0880043051.01.T01:CDS |
| GGCTTATACAGGTATAGGCT+AGG | 0.570264 | 8:-18206163 | MsG0880043051.01.T01:CDS |
| AATTCATAGTAAGCAACTTG+AGG | 0.580423 | 8:+18206592 | None:intergenic |
| TTGATCCACAAGAAATGCAT+AGG | 0.591375 | 8:-18206831 | MsG0880043051.01.T01:CDS |
| CAGAAGATAACATAGTGTCC+TGG | 0.592657 | 8:+18205939 | None:intergenic |
| AGCATCCGAGTTGTTAGCTG+AGG | 0.595705 | 8:-18206011 | MsG0880043051.01.T01:CDS |
| GTTAGTTCTAGGAAAGTCAA+AGG | 0.600167 | 8:-18205834 | MsG0880043051.01.T01:CDS |
| AAGGTGGAGCTTGAGCCAGT+TGG | 0.606144 | 8:-18206541 | MsG0880043051.01.T01:CDS |
| ACAACATAAGTAGCAAACTC+AGG | 0.609304 | 8:+18206619 | None:intergenic |
| CTTGTTACTGACATCAGAGA+AGG | 0.627007 | 8:-18206934 | MsG0880043051.01.T01:CDS |
| ACAACTTGATGGAACTAAGG+TGG | 0.630614 | 8:-18206557 | MsG0880043051.01.T01:CDS |
| GTTATCTTCTGGGAAATCAG+TGG | 0.640384 | 8:-18205927 | MsG0880043051.01.T01:CDS |
| GCATCCGAGTTGTTAGCTGA+GGG | 0.645552 | 8:-18206010 | MsG0880043051.01.T01:CDS |
| GAGATGTAGTAAAGGTTACA+GGG | 0.646750 | 8:-18206141 | MsG0880043051.01.T01:CDS |
| GTTGAGACACTATGCAGGAG+AGG | 0.647395 | 8:-18206712 | MsG0880043051.01.T01:CDS |
| TAGCTGAGGGAAAATTGAAG+TGG | 0.648982 | 8:-18205997 | MsG0880043051.01.T01:CDS |
| GAAGCAAGTGATGAAGTGCT+TGG | 0.664960 | 8:-18205903 | MsG0880043051.01.T01:CDS |
| ATTGATTTATCCAAAGAACC+AGG | 0.665402 | 8:-18205957 | MsG0880043051.01.T01:CDS |
| AACTGATGTGAAGATTGGCG+AGG | 0.692343 | 8:-18206515 | MsG0880043051.01.T01:CDS |
| ACCATACTCAGAAGTCACCA+AGG | 0.706171 | 8:+18206687 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTACTTATTATATTTG+AGG | + | Chr8:18206352-18206371 | None:intergenic | 15.0% |
| !! | TTTGTTTATGATAATAATCT+TGG | - | Chr8:18206533-18206552 | MsG0880043051.01.T01:CDS | 15.0% |
| ! | AAATCTGAAAAGATATCATG+TGG | + | Chr8:18206500-18206519 | None:intergenic | 25.0% |
| ! | AAGATTGAATCTCAGTAAAT+TGG | + | Chr8:18206453-18206472 | None:intergenic | 25.0% |
| !! | AATAATCTTGGATAATTTGC+AGG | - | Chr8:18206545-18206564 | MsG0880043051.01.T01:CDS | 25.0% |
| !! | ATTTCTTATGATGCTTTTCT+CGG | - | Chr8:18206396-18206415 | MsG0880043051.01.T01:intron | 25.0% |
| AAAGAATTTATAGTACCTGC+AGG | + | Chr8:18206263-18206282 | None:intergenic | 30.0% | |
| AAGATTCTTGAGCATTATGT+TGG | - | Chr8:18206964-18206983 | MsG0880043051.01.T01:CDS | 30.0% | |
| AATTCATAGTAAGCAACTTG+AGG | + | Chr8:18206140-18206159 | None:intergenic | 30.0% | |
| ATTCATAGTAAGCAACTTGA+GGG | + | Chr8:18206139-18206158 | None:intergenic | 30.0% | |
| CAGAACATTTGAACAAGTTT+GGG | - | Chr8:18205767-18205786 | MsG0880043051.01.T01:CDS | 30.0% | |
| CTAATGCTAAGTATGTTCTA+GGG | - | Chr8:18205959-18205978 | MsG0880043051.01.T01:CDS | 30.0% | |
| CTAGAACATACTTAGCATTA+GGG | + | Chr8:18205960-18205979 | None:intergenic | 30.0% | |
| TCAGAACATTTGAACAAGTT+TGG | - | Chr8:18205766-18205785 | MsG0880043051.01.T01:CDS | 30.0% | |
| TTCAAATGTGAATCCTAAAG+TGG | - | Chr8:18206085-18206104 | MsG0880043051.01.T01:CDS | 30.0% | |
| ! | ATTGATTTATCCAAAGAACC+AGG | - | Chr8:18206772-18206791 | MsG0880043051.01.T01:intron | 30.0% |
| ! | TACTCTAAAGACTGAATTGA+AGG | + | Chr8:18206320-18206339 | None:intergenic | 30.0% |
| ! | TTTAGACATAGCAGTTCTAA+TGG | + | Chr8:18205848-18205867 | None:intergenic | 30.0% |
| !! | ATTCCTTTGAAACAACTTGA+TGG | - | Chr8:18206161-18206180 | MsG0880043051.01.T01:CDS | 30.0% |
| AAAAAGTTGAGACACTATGC+AGG | - | Chr8:18206012-18206031 | MsG0880043051.01.T01:CDS | 35.0% | |
| AACATTTGAACAAGTTTGGG+AGG | - | Chr8:18205770-18205789 | MsG0880043051.01.T01:CDS | 35.0% | |
| AAGTTAGCTAGTTCAGGATT+GGG | + | Chr8:18205880-18205899 | None:intergenic | 35.0% | |
| AATGCATAGGATTGAGCAAT+TGG | - | Chr8:18205911-18205930 | MsG0880043051.01.T01:CDS | 35.0% | |
| ACAACATAAGTAGCAAACTC+AGG | + | Chr8:18206113-18206132 | None:intergenic | 35.0% | |
| AGGACACTATGTTATCTTCT+GGG | - | Chr8:18206792-18206811 | MsG0880043051.01.T01:intron | 35.0% | |
| ATAGGATTGAGCAATTGGTA+TGG | - | Chr8:18205916-18205935 | MsG0880043051.01.T01:CDS | 35.0% | |
| ATTTATAGTACCTGCAGGAT+TGG | + | Chr8:18206258-18206277 | None:intergenic | 35.0% | |
| CATAATGCTCAAGAATCTTC+TGG | + | Chr8:18206963-18206982 | None:intergenic | 35.0% | |
| CCTAATGCTAAGTATGTTCT+AGG | - | Chr8:18205958-18205977 | MsG0880043051.01.T01:CDS | 35.0% | |
| CCTAGAACATACTTAGCATT+AGG | + | Chr8:18205961-18205980 | None:intergenic | 35.0% | |
| GAAACAACTTGATGGAACTA+AGG | - | Chr8:18206169-18206188 | MsG0880043051.01.T01:intron | 35.0% | |
| GAGATGTAGTAAAGGTTACA+GGG | - | Chr8:18206588-18206607 | MsG0880043051.01.T01:CDS | 35.0% | |
| GGATTAACTGATGTGAAGAT+TGG | - | Chr8:18206209-18206228 | MsG0880043051.01.T01:intron | 35.0% | |
| TCAATCCTATGCATTTCTTG+TGG | + | Chr8:18205906-18205925 | None:intergenic | 35.0% | |
| TCAGTAAATTGGTGAATGCA+AGG | + | Chr8:18206442-18206461 | None:intergenic | 35.0% | |
| TTCACATCAGTTAATCCAAC+TGG | + | Chr8:18206206-18206225 | None:intergenic | 35.0% | |
| TTGATCCACAAGAAATGCAT+AGG | - | Chr8:18205898-18205917 | MsG0880043051.01.T01:CDS | 35.0% | |
| ! | ATCTTGGCTATGTTAGTTCT+AGG | - | Chr8:18206884-18206903 | MsG0880043051.01.T01:CDS | 35.0% |
| ! | ATGTTCCTTTTCGAACAAGT+CGG | + | Chr8:18206939-18206958 | None:intergenic | 35.0% |
| ! | CAATTGGTATGGATTGATAC+CGG | - | Chr8:18205927-18205946 | MsG0880043051.01.T01:CDS | 35.0% |
| ! | GACAAGTCTTTTGTTGATCT+TGG | - | Chr8:18206868-18206887 | MsG0880043051.01.T01:CDS | 35.0% |
| ! | GATAATTTGCAGGCTTATAC+AGG | - | Chr8:18206555-18206574 | MsG0880043051.01.T01:CDS | 35.0% |
| ! | GTTCCATCAAGTTGTTTCAA+AGG | + | Chr8:18206167-18206186 | None:intergenic | 35.0% |
| ! | TCTAGGAAAGTCAAAGGTAT+TGG | - | Chr8:18206901-18206920 | MsG0880043051.01.T01:CDS | 35.0% |
| !! | AGTTGATTTGCAACTATCAG+TGG | - | Chr8:18206691-18206710 | MsG0880043051.01.T01:CDS | 35.0% |
| !! | GTTAGTTCTAGGAAAGTCAA+AGG | - | Chr8:18206895-18206914 | MsG0880043051.01.T01:CDS | 35.0% |
| !! | TGATTTCTGGAGTTGAGTTA+CGG | + | Chr8:18206616-18206635 | None:intergenic | 35.0% |
| ACAACTTGATGGAACTAAGG+TGG | - | Chr8:18206172-18206191 | MsG0880043051.01.T01:intron | 40.0% | |
| CAAGTTAGCTAGTTCAGGAT+TGG | + | Chr8:18205881-18205900 | None:intergenic | 40.0% | |
| CAGAAATCAGGTTTATTCGC+AGG | - | Chr8:18206627-18206646 | MsG0880043051.01.T01:CDS | 40.0% | |
| CAGAAGATAACATAGTGTCC+TGG | + | Chr8:18206793-18206812 | None:intergenic | 40.0% | |
| CAGGACACTATGTTATCTTC+TGG | - | Chr8:18206791-18206810 | MsG0880043051.01.T01:intron | 40.0% | |
| CTGCGAATAAACCTGATTTC+TGG | + | Chr8:18206629-18206648 | None:intergenic | 40.0% | |
| CTTGTTACTGACATCAGAGA+AGG | - | Chr8:18205795-18205814 | MsG0880043051.01.T01:CDS | 40.0% | |
| GGAGATGTAGTAAAGGTTAC+AGG | - | Chr8:18206587-18206606 | MsG0880043051.01.T01:CDS | 40.0% | |
| GTAACTCAACTCCAGAAATC+AGG | - | Chr8:18206615-18206634 | MsG0880043051.01.T01:CDS | 40.0% | |
| TAGCTGAGGGAAAATTGAAG+TGG | - | Chr8:18206732-18206751 | MsG0880043051.01.T01:CDS | 40.0% | |
| TAGGCTAGGAGATGTAGTAA+AGG | - | Chr8:18206580-18206599 | MsG0880043051.01.T01:CDS | 40.0% | |
| TGGATCAAGTTAGCTAGTTC+AGG | + | Chr8:18205886-18205905 | None:intergenic | 40.0% | |
| TGGTGAATGTTGTACATGCT+TGG | - | Chr8:18206846-18206865 | MsG0880043051.01.T01:CDS | 40.0% | |
| TTAGCATTAGGGAAAAGCTC+CGG | + | Chr8:18205949-18205968 | None:intergenic | 40.0% | |
| TTGCAGGCTTATACAGGTAT+AGG | - | Chr8:18206561-18206580 | MsG0880043051.01.T01:CDS | 40.0% | |
| ! | AACATAGTGTCCTGGTTCTT+TGG | + | Chr8:18206785-18206804 | None:intergenic | 40.0% |
| ! | GACATAGCAGTTCTAATGGA+TGG | + | Chr8:18205844-18205863 | None:intergenic | 40.0% |
| ! | GTTATCTTCTGGGAAATCAG+TGG | - | Chr8:18206802-18206821 | MsG0880043051.01.T01:intron | 40.0% |
| ! | TTTTCCCTCAGCTAACAACT+CGG | + | Chr8:18206726-18206745 | None:intergenic | 40.0% |
| !! | TATGTTCTAGGGATCATGAC+AGG | - | Chr8:18205970-18205989 | MsG0880043051.01.T01:CDS | 40.0% |
| AACTGATGTGAAGATTGGCG+AGG | - | Chr8:18206214-18206233 | MsG0880043051.01.T01:intron | 45.0% | |
| ACCATACTCAGAAGTCACCA+AGG | + | Chr8:18206045-18206064 | None:intergenic | 45.0% | |
| AGGGATCATGACAGGTTCAA+TGG | - | Chr8:18205978-18205997 | MsG0880043051.01.T01:CDS | 45.0% | |
| GGCTTATACAGGTATAGGCT+AGG | - | Chr8:18206566-18206585 | MsG0880043051.01.T01:CDS | 45.0% | |
| TCGAACAAGTCGGAGTTCAA+GGG | + | Chr8:18206929-18206948 | None:intergenic | 45.0% | |
| TTCGAACAAGTCGGAGTTCA+AGG | + | Chr8:18206930-18206949 | None:intergenic | 45.0% | |
| ! | GAACTCCGACTTGTTCGAAA+AGG | - | Chr8:18206931-18206950 | MsG0880043051.01.T01:CDS | 45.0% |
| ! | GAAGCAAGTGATGAAGTGCT+TGG | - | Chr8:18206826-18206845 | MsG0880043051.01.T01:CDS | 45.0% |
| ! | TCCTTGGTGACTTCTGAGTA+TGG | - | Chr8:18206041-18206060 | MsG0880043051.01.T01:CDS | 45.0% |
| !! | GTTGTTTTCACCAATCCTGC+AGG | - | Chr8:18206245-18206264 | MsG0880043051.01.T01:intron | 45.0% |
| ACTATGCAGGAGAGGTTCCT+TGG | - | Chr8:18206025-18206044 | MsG0880043051.01.T01:CDS | 50.0% | |
| AGCATCCGAGTTGTTAGCTG+AGG | - | Chr8:18206718-18206737 | MsG0880043051.01.T01:CDS | 50.0% | |
| GCATCCGAGTTGTTAGCTGA+GGG | - | Chr8:18206719-18206738 | MsG0880043051.01.T01:CDS | 50.0% | |
| GTTGAGACACTATGCAGGAG+AGG | - | Chr8:18206017-18206036 | MsG0880043051.01.T01:CDS | 50.0% | |
| TCTGAGTATGGTGCCTCTGA+AGG | - | Chr8:18206053-18206072 | MsG0880043051.01.T01:CDS | 50.0% | |
| TGAAGCAACCCAACCTTCAG+AGG | + | Chr8:18206069-18206088 | None:intergenic | 50.0% | |
| ! | AGTATGGTGCCTCTGAAGGT+TGG | - | Chr8:18206057-18206076 | MsG0880043051.01.T01:CDS | 50.0% |
| ! | GAAGATTGGCGAGGAGTATG+AGG | - | Chr8:18206223-18206242 | MsG0880043051.01.T01:intron | 50.0% |
| ! | GCAAACTCAGGAGCCACTTT+AGG | + | Chr8:18206101-18206120 | None:intergenic | 50.0% |
| ! | GTATGGTGCCTCTGAAGGTT+GGG | - | Chr8:18206058-18206077 | MsG0880043051.01.T01:CDS | 50.0% |
| AAGGTGGAGCTTGAGCCAGT+TGG | - | Chr8:18206188-18206207 | MsG0880043051.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 18205760 | 18206991 | 18205760 | ID=MsG0880043051.01;Name=MsG0880043051.01 |
| Chr8 | mRNA | 18205760 | 18206991 | 18205760 | ID=MsG0880043051.01.T01;Parent=MsG0880043051.01;Name=MsG0880043051.01.T01;_AED=0.50;_eAED=0.59;_QI=0|0|0|1|1|1|3|0|290 |
| Chr8 | exon | 18206819 | 18206991 | 18206819 | ID=MsG0880043051.01.T01:exon:4789;Parent=MsG0880043051.01.T01 |
| Chr8 | exon | 18206485 | 18206759 | 18206485 | ID=MsG0880043051.01.T01:exon:4788;Parent=MsG0880043051.01.T01 |
| Chr8 | exon | 18205760 | 18206184 | 18205760 | ID=MsG0880043051.01.T01:exon:4787;Parent=MsG0880043051.01.T01 |
| Chr8 | CDS | 18206819 | 18206991 | 18206819 | ID=MsG0880043051.01.T01:cds;Parent=MsG0880043051.01.T01 |
| Chr8 | CDS | 18206485 | 18206759 | 18206485 | ID=MsG0880043051.01.T01:cds;Parent=MsG0880043051.01.T01 |
| Chr8 | CDS | 18205760 | 18206184 | 18205760 | ID=MsG0880043051.01.T01:cds;Parent=MsG0880043051.01.T01 |
| Gene Sequence |
| Protein sequence |
