Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005800.01.T01 | PSS07708.1 | 81.967 | 122 | 10 | 1 | 1 | 110 | 222 | 343 | 6.21E-60 | 197 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005800.01.T01 | Q93ZR1 | 63.057 | 157 | 11 | 2 | 1 | 110 | 409 | 565 | 2.26E-55 | 183 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005800.01.T01 | A0A2R6QGH5 | 81.967 | 122 | 10 | 1 | 1 | 110 | 222 | 343 | 2.96e-60 | 197 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180005800.01.T01 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048462.01 | MsG0180005800.01 | 0.814049 | 1.877810e-51 | 1.246753e-48 |
| MsG0080048463.01 | MsG0180005800.01 | 0.809487 | 1.846932e-50 | 1.085770e-47 |
| MsG0180000470.01 | MsG0180005800.01 | 0.838035 | 3.652120e-57 | 4.832178e-54 |
| MsG0180002259.01 | MsG0180005800.01 | 0.801391 | 9.204588e-49 | 4.390554e-46 |
| MsG0180003686.01 | MsG0180005800.01 | 0.803271 | 3.775066e-49 | 1.888909e-46 |
| MsG0180004275.01 | MsG0180005800.01 | 0.836491 | 9.068839e-57 | 1.144652e-53 |
| MsG0180004389.01 | MsG0180005800.01 | 0.826041 | 3.371296e-54 | 3.126227e-51 |
| MsG0180004465.01 | MsG0180005800.01 | 0.819184 | 1.327153e-52 | 1.014071e-49 |
| MsG0180004765.01 | MsG0180005800.01 | 0.802660 | 5.049845e-49 | 2.487594e-46 |
| MsG0180005800.01 | MsG0180006134.01 | 0.804105 | 2.533549e-49 | 1.295204e-46 |
| MsG0180005800.01 | MsG0280006299.01 | 0.807114 | 5.919036e-50 | 3.269082e-47 |
| MsG0180005800.01 | MsG0280006324.01 | 0.806904 | 6.558808e-50 | 3.602736e-47 |
| MsG0180005800.01 | MsG0280006405.01 | 0.800724 | 1.260130e-48 | 5.910128e-46 |
| MsG0180005800.01 | MsG0280006491.01 | 0.803148 | 4.003171e-49 | 1.996732e-46 |
| MsG0180005800.01 | MsG0280006512.01 | 0.805451 | 1.326661e-49 | 7.021117e-47 |
| MsG0180005800.01 | MsG0280006770.01 | 0.800201 | 1.610564e-48 | 7.453996e-46 |
| MsG0180005800.01 | MsG0280007955.01 | 0.850909 | 1.251945e-60 | 2.490400e-57 |
| MsG0180005800.01 | MsG0280008112.01 | 0.820804 | 5.651829e-53 | 4.517858e-50 |
| MsG0180005800.01 | MsG0280008377.01 | 0.812897 | 3.363614e-51 | 2.164643e-48 |
| MsG0180005800.01 | MsG0280009421.01 | 0.820376 | 7.086334e-53 | 5.597827e-50 |
| MsG0180005800.01 | MsG0280010366.01 | 0.814127 | 1.804663e-51 | 1.200733e-48 |
| MsG0180005800.01 | MsG0280010698.01 | 0.807584 | 4.706848e-50 | 2.631408e-47 |
| MsG0180005800.01 | MsG0280010722.01 | 0.816887 | 4.385680e-52 | 3.146030e-49 |
| MsG0180005800.01 | MsG0280010992.01 | 0.820251 | 7.572468e-53 | 5.960674e-50 |
| MsG0180005800.01 | MsG0280011101.01 | 0.815246 | 1.020201e-51 | 6.996242e-49 |
| MsG0180005800.01 | MsG0380011609.01 | 0.811190 | 7.923665e-51 | 4.872801e-48 |
| MsG0180005800.01 | MsG0380012460.01 | 0.822092 | 2.849391e-53 | 2.361409e-50 |
| MsG0180005800.01 | MsG0380013176.01 | 0.804211 | 2.408146e-49 | 1.234407e-46 |
| MsG0180005800.01 | MsG0380014173.01 | 0.802124 | 6.510735e-49 | 3.163769e-46 |
| MsG0180005800.01 | MsG0380014537.01 | 0.829503 | 4.962403e-55 | 5.088322e-52 |
| MsG0180005800.01 | MsG0380014701.01 | 0.814165 | 1.769920e-51 | 1.178828e-48 |
| MsG0180005800.01 | MsG0380015101.01 | 0.801407 | 9.138441e-49 | 4.360685e-46 |
| MsG0180005800.01 | MsG0380015332.01 | 0.802299 | 5.993072e-49 | 2.925449e-46 |
| MsG0180005800.01 | MsG0380015555.01 | 0.823901 | 1.079327e-53 | 9.416114e-51 |
| MsG0180005800.01 | MsG0380016163.01 | 0.815392 | 9.463928e-52 | 6.516646e-49 |
| MsG0180005800.01 | MsG0380016517.01 | 0.800769 | 1.233712e-48 | 5.792769e-46 |
| MsG0180005800.01 | MsG0480018236.01 | 0.803081 | 4.131806e-49 | 2.057307e-46 |
| MsG0180005800.01 | MsG0480021452.01 | 0.810667 | 1.028552e-50 | 6.238147e-48 |
| MsG0180005800.01 | MsG0480021465.01 | 0.800273 | 1.557128e-48 | 7.220123e-46 |
| MsG0180005800.01 | MsG0480021501.01 | 0.811674 | 6.219963e-51 | 3.873961e-48 |
| MsG0180005800.01 | MsG0480022068.01 | 0.809421 | 1.907852e-50 | 1.119693e-47 |
| MsG0180005800.01 | MsG0480022985.01 | 0.816793 | 4.605002e-52 | 3.294800e-49 |
| MsG0180005800.01 | MsG0480023390.01 | 0.806862 | 6.694710e-50 | 3.673528e-47 |
| MsG0180005800.01 | MsG0580024038.01 | 0.812374 | 4.377691e-51 | 2.778610e-48 |
| MsG0180005800.01 | MsG0580024197.01 | 0.812689 | 3.736284e-51 | 2.391403e-48 |
| MsG0180005800.01 | MsG0580026086.01 | 0.804847 | 1.774338e-49 | 9.246306e-47 |
| MsG0180005800.01 | MsG0580027152.01 | 0.801476 | 8.844861e-49 | 4.228067e-46 |
| MsG0180005800.01 | MsG0580027211.01 | 0.807957 | 3.922046e-50 | 2.214299e-47 |
| MsG0180005800.01 | MsG0580027947.01 | 0.805425 | 1.343210e-49 | 7.103852e-47 |
| MsG0180005800.01 | MsG0580029236.01 | 0.820285 | 7.437882e-53 | 5.860183e-50 |
| MsG0180005800.01 | MsG0680030413.01 | 0.807584 | 4.706848e-50 | 2.631408e-47 |
| MsG0180005800.01 | MsG0680030674.01 | 0.800877 | 1.172473e-48 | 5.520866e-46 |
| MsG0180005800.01 | MsG0680035123.01 | 0.800376 | 1.483555e-48 | 6.897271e-46 |
| MsG0180005800.01 | MsG0780036593.01 | 0.804087 | 2.556225e-49 | 1.306174e-46 |
| MsG0180005800.01 | MsG0780036602.01 | 0.824237 | 9.001424e-54 | 7.927208e-51 |
| MsG0180005800.01 | MsG0780038401.01 | 0.805487 | 1.303395e-49 | 6.904444e-47 |
| MsG0180005800.01 | MsG0780038439.01 | 0.808390 | 3.170402e-50 | 1.810561e-47 |
| MsG0180005800.01 | MsG0780039170.01 | 0.807256 | 5.524722e-50 | 3.062651e-47 |
| MsG0180005800.01 | MsG0780039171.01 | 0.807304 | 5.396800e-50 | 2.995567e-47 |
| MsG0180005800.01 | MsG0780039443.01 | 0.821606 | 3.692335e-53 | 3.017998e-50 |
| MsG0180005800.01 | MsG0780040262.01 | 0.804885 | 1.742883e-49 | 9.091499e-47 |
| MsG0180005800.01 | MsG0780040888.01 | 0.806512 | 7.936782e-50 | 4.315979e-47 |
| MsG0180005800.01 | MsG0780041416.01 | 0.802696 | 4.962868e-49 | 2.447147e-46 |
| MsG0180005800.01 | MsG0880041863.01 | 0.813790 | 2.141375e-51 | 1.411817e-48 |
| MsG0180005800.01 | MsG0880043051.01 | 0.800965 | 1.125184e-48 | 5.309945e-46 |
| MsG0180005800.01 | MsG0880043479.01 | 0.805630 | 1.216611e-49 | 6.468396e-47 |
| MsG0180005800.01 | MsG0880043941.01 | 0.805501 | 1.294861e-49 | 6.861473e-47 |
| MsG0180005800.01 | MsG0880045111.01 | 0.834342 | 3.168994e-56 | 3.749971e-53 |
| MsG0180005800.01 | MsG0880045372.01 | 0.810171 | 1.316062e-50 | 7.877541e-48 |
| MsG0180005800.01 | MsG0880045736.01 | 0.831100 | 2.021794e-55 | 2.172060e-52 |
| MsG0180005800.01 | MsG0880047473.01 | 0.808469 | 3.050797e-50 | 1.745826e-47 |
| MsG0180005800.01 | MsG0880047764.01 | 0.809427 | 1.902478e-50 | 1.116702e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005800.01.T01 | MTR_1g107255 | 69.427 | 157 | 1 | 2 | 1 | 110 | 407 | 563 | 6.27e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005800.01.T01 | AT5G50320 | 63.057 | 157 | 11 | 2 | 1 | 110 | 409 | 565 | 2.31e-56 | 183 |
Find 37 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCGTGAGCTCCATGTTTA+TGG | 0.142211 | 1:+96272333 | MsG0180005800.01.T01:CDS |
| CACTACTTGTCCAGAGCTTA+TGG | 0.210436 | 1:+96272296 | MsG0180005800.01.T01:CDS |
| ACGCCATTACTACAGAAAAT+TGG | 0.214514 | 1:+96272749 | MsG0180005800.01.T01:CDS |
| ACTAAGATAGCTGTAATTTC+TGG | 0.226240 | 1:+96272717 | MsG0180005800.01.T01:CDS |
| GGGTTATGGTACACTTCTTA+TGG | 0.305200 | 1:+96272656 | MsG0180005800.01.T01:intron |
| CTTGAGCAGGATATCCTTGT+TGG | 0.326582 | 1:+96272243 | MsG0180005800.01.T01:intron |
| ATTACGATTATTATTACATT+AGG | 0.329472 | 1:-96272806 | None:intergenic |
| AATTATTGTTAACAGGGTTA+TGG | 0.336285 | 1:+96272642 | MsG0180005800.01.T01:intron |
| GTTTAAAATGTCGCGATGTT+CGG | 0.368009 | 1:+96271739 | MsG0180005800.01.T01:CDS |
| ATTAGGTATTTCATCATGTA+AGG | 0.374054 | 1:-96272789 | None:intergenic |
| TACCTGGATTCCAGCTTCTC+TGG | 0.383322 | 1:-96271763 | None:intergenic |
| GGGGTTGAGAAGGGAATCTA+AGG | 0.396519 | 1:+96271685 | None:intergenic |
| CTAAGATAGCTGTAATTTCT+GGG | 0.402023 | 1:+96272718 | MsG0180005800.01.T01:CDS |
| CGCCATTACTACAGAAAATT+GGG | 0.402981 | 1:+96272750 | MsG0180005800.01.T01:CDS |
| ATATCCTTGTTGGTTTGTTA+CGG | 0.406404 | 1:+96272253 | MsG0180005800.01.T01:CDS |
| ACTACTTGTCCAGAGCTTAT+GGG | 0.466121 | 1:+96272297 | MsG0180005800.01.T01:CDS |
| GGTGACCTCTGGGGTTGAGA+AGG | 0.496191 | 1:+96271675 | None:intergenic |
| TGTTTATGGAACTGCTGTAC+CGG | 0.502199 | 1:+96272347 | MsG0180005800.01.T01:CDS |
| ATAGCTGTAATTTCTGGGGT+TGG | 0.510369 | 1:+96272723 | MsG0180005800.01.T01:CDS |
| GACCAGAGAAGCTGGAATCC+AGG | 0.513139 | 1:+96271761 | MsG0180005800.01.T01:CDS |
| GATGTTCGGACCAGAGAAGC+TGG | 0.521187 | 1:+96271753 | MsG0180005800.01.T01:CDS |
| GGAGTTAGCATTAGCTCGAA+TGG | 0.524838 | 1:+96271707 | MsG0180005800.01.T01:exon |
| GTGACCTCTGGGGTTGAGAA+GGG | 0.529707 | 1:+96271676 | None:intergenic |
| AATTGGGATATGAGCTTGAA+GGG | 0.539350 | 1:+96272766 | MsG0180005800.01.T01:CDS |
| TGGTACACTTCTTATGGAGG+AGG | 0.541142 | 1:+96272662 | MsG0180005800.01.T01:CDS |
| ATTAGCTCGAATGGAAGACT+TGG | 0.543470 | 1:+96271716 | MsG0180005800.01.T01:exon |
| GAACACTTACCCATAAGCTC+TGG | 0.547667 | 1:-96272306 | None:intergenic |
| GCTCTGGACAAGTAGTGTTA+CGG | 0.560794 | 1:-96272290 | None:intergenic |
| AAATTGGGATATGAGCTTGA+AGG | 0.569511 | 1:+96272765 | MsG0180005800.01.T01:CDS |
| TTAGCTCGAATGGAAGACTT+GGG | 0.582791 | 1:+96271717 | MsG0180005800.01.T01:exon |
| TTGTTACGGCTGCGAAAATG+TGG | 0.617345 | 1:+96272267 | MsG0180005800.01.T01:CDS |
| TTATGGTACACTTCTTATGG+AGG | 0.625503 | 1:+96272659 | MsG0180005800.01.T01:CDS |
| GTACAGCAGTTCCATAAACA+TGG | 0.632941 | 1:-96272344 | None:intergenic |
| TAAGATAGCTGTAATTTCTG+GGG | 0.637498 | 1:+96272719 | MsG0180005800.01.T01:CDS |
| TTCTTATGGAGGAGGCTGAG+CGG | 0.672319 | 1:+96272670 | MsG0180005800.01.T01:CDS |
| GGGTTGAGAAGGGAATCTAA+GGG | 0.736859 | 1:+96271686 | None:intergenic |
| GCAGCCGTAACAAACCAACA+AGG | 0.750250 | 1:-96272257 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTACGATTATTATTACATT+AGG | - | Chr1:96272809-96272828 | None:intergenic | 15.0% |
| !!! | ATCGTAATAGTTTTTTTTTA+AGG | + | Chr1:96272821-96272840 | MsG0180005800.01.T01:three_prime_UTR | 15.0% |
| !!! | TCGTAATAGTTTTTTTTTAA+GGG | + | Chr1:96272822-96272841 | MsG0180005800.01.T01:three_prime_UTR | 15.0% |
| !! | ATAATAATAGTTATTTGCCA+TGG | + | Chr1:96272850-96272869 | MsG0180005800.01.T01:three_prime_UTR | 20.0% |
| ! | AATAAATTTCAAGACGAGAT+TGG | - | Chr1:96271800-96271819 | None:intergenic | 25.0% |
| ! | AATATCCAAGAAGATACATA+TGG | + | Chr1:96272538-96272557 | MsG0180005800.01.T01:intron | 25.0% |
| ! | AATATCCATATGTATCTTCT+TGG | - | Chr1:96272546-96272565 | None:intergenic | 25.0% |
| ! | AATTATTGTTAACAGGGTTA+TGG | + | Chr1:96272642-96272661 | MsG0180005800.01.T01:intron | 25.0% |
| ! | AGAAAATGATGATAGACAAA+AGG | - | Chr1:96272052-96272071 | None:intergenic | 25.0% |
| ! | ATCTTCTTGGATATTATACA+TGG | - | Chr1:96272533-96272552 | None:intergenic | 25.0% |
| ! | ATTAGGTATTTCATCATGTA+AGG | - | Chr1:96272792-96272811 | None:intergenic | 25.0% |
| ! | CAACAACAAATTTACACTAA+AGG | - | Chr1:96272183-96272202 | None:intergenic | 25.0% |
| ! | GAATATTCACATGTTCTTAT+TGG | + | Chr1:96272449-96272468 | MsG0180005800.01.T01:intron | 25.0% |
| ! | GACCAAAATTATTGTTAACA+GGG | + | Chr1:96272636-96272655 | MsG0180005800.01.T01:intron | 25.0% |
| ! | TGACCAAAATTATTGTTAAC+AGG | + | Chr1:96272635-96272654 | MsG0180005800.01.T01:intron | 25.0% |
| !! | AACCCTGTTAACAATAATTT+TGG | - | Chr1:96272641-96272660 | None:intergenic | 25.0% |
| !! | TTTTGTCATATGAAGATACA+CGG | + | Chr1:96271979-96271998 | MsG0180005800.01.T01:intron | 25.0% |
| !!! | CCTTCTTTATTTTGAATGAA+GGG | + | Chr1:96272136-96272155 | MsG0180005800.01.T01:intron | 25.0% |
| !!! | CTTCTTTATTTTGAATGAAG+GGG | + | Chr1:96272137-96272156 | MsG0180005800.01.T01:intron | 25.0% |
| !!! | TAACAATAATTTTGGTCAGT+AGG | - | Chr1:96272633-96272652 | None:intergenic | 25.0% |
| AAGAAATACAGAATGTCTGT+TGG | - | Chr1:96271877-96271896 | None:intergenic | 30.0% | |
| ACTAAGATAGCTGTAATTTC+TGG | + | Chr1:96272717-96272736 | MsG0180005800.01.T01:CDS | 30.0% | |
| ATGATGATAGACAAAAGGAT+AGG | - | Chr1:96272047-96272066 | None:intergenic | 30.0% | |
| ATTATATGGCAAATGAAGGT+TGG | + | Chr1:96271950-96271969 | MsG0180005800.01.T01:intron | 30.0% | |
| CCCTTCATTCAAAATAAAGA+AGG | - | Chr1:96272139-96272158 | None:intergenic | 30.0% | |
| CTAAGATAGCTGTAATTTCT+GGG | + | Chr1:96272718-96272737 | MsG0180005800.01.T01:CDS | 30.0% | |
| GACATTCTGTATTTCTTTGT+AGG | + | Chr1:96271880-96271899 | MsG0180005800.01.T01:intron | 30.0% | |
| TAAGATAGCTGTAATTTCTG+GGG | + | Chr1:96272719-96272738 | MsG0180005800.01.T01:CDS | 30.0% | |
| TACAATGAGGAACATGTTAT+TGG | - | Chr1:96272600-96272619 | None:intergenic | 30.0% | |
| TTATATGGCAAATGAAGGTT+GGG | + | Chr1:96271951-96271970 | MsG0180005800.01.T01:intron | 30.0% | |
| TTTACACTAAAGGTAAGAAC+AGG | - | Chr1:96272173-96272192 | None:intergenic | 30.0% | |
| ! | ATCCCAATTTTCTGTAGTAA+TGG | - | Chr1:96272755-96272774 | None:intergenic | 30.0% |
| ! | TTGTTGTTGTTGATGAAACA+TGG | + | Chr1:96272194-96272213 | MsG0180005800.01.T01:intron | 30.0% |
| !! | ATATCCTTGTTGGTTTGTTA+CGG | + | Chr1:96272253-96272272 | MsG0180005800.01.T01:CDS | 30.0% |
| !! | ATTGGTTCTAGATAATTACC+TGG | - | Chr1:96271782-96271801 | None:intergenic | 30.0% |
| !!! | GCCTTCTTTATTTTGAATGA+AGG | + | Chr1:96272135-96272154 | MsG0180005800.01.T01:intron | 30.0% |
| AAATTGGGATATGAGCTTGA+AGG | + | Chr1:96272765-96272784 | MsG0180005800.01.T01:CDS | 35.0% | |
| AATTGGGATATGAGCTTGAA+GGG | + | Chr1:96272766-96272785 | MsG0180005800.01.T01:CDS | 35.0% | |
| ACGCCATTACTACAGAAAAT+TGG | + | Chr1:96272749-96272768 | MsG0180005800.01.T01:CDS | 35.0% | |
| ACTTGTTCGTCGTGATTATA+TGG | + | Chr1:96271936-96271955 | MsG0180005800.01.T01:intron | 35.0% | |
| CGCCATTACTACAGAAAATT+GGG | + | Chr1:96272750-96272769 | MsG0180005800.01.T01:CDS | 35.0% | |
| CGTGATTATATGGCAAATGA+AGG | + | Chr1:96271946-96271965 | MsG0180005800.01.T01:intron | 35.0% | |
| GAACATGTTATTGGTATCCT+TGG | - | Chr1:96272591-96272610 | None:intergenic | 35.0% | |
| TTATGGTACACTTCTTATGG+AGG | + | Chr1:96272659-96272678 | MsG0180005800.01.T01:CDS | 35.0% | |
| ! | ATTAGCATGACAGTTTTACC+TGG | - | Chr1:96272403-96272422 | None:intergenic | 35.0% |
| ! | GTTTAAAATGTCGCGATGTT+CGG | + | Chr1:96271739-96271758 | MsG0180005800.01.T01:CDS | 35.0% |
| ! | TGAGTGTAATTGCTGAGTTT+TGG | + | Chr1:96272480-96272499 | MsG0180005800.01.T01:intron | 35.0% |
| !! | ATTTTGGTCAGTAGGTCAAT+TGG | - | Chr1:96272625-96272644 | None:intergenic | 35.0% |
| ACTACTTGTCCAGAGCTTAT+GGG | + | Chr1:96272297-96272316 | MsG0180005800.01.T01:CDS | 40.0% | |
| AGGATAGGCACTAATAAGAG+AGG | - | Chr1:96272032-96272051 | None:intergenic | 40.0% | |
| AGGTCAATTGGAGTACAATG+AGG | - | Chr1:96272613-96272632 | None:intergenic | 40.0% | |
| ATCACCAGATTAACCAGAAG+AGG | + | Chr1:96271909-96271928 | MsG0180005800.01.T01:intron | 40.0% | |
| ATGAAACATGGCCATGACAT+TGG | + | Chr1:96272206-96272225 | MsG0180005800.01.T01:intron | 40.0% | |
| ATTAGCTCGAATGGAAGACT+TGG | + | Chr1:96271716-96271735 | MsG0180005800.01.T01:exon | 40.0% | |
| GAAGGCAAAATATGCACAAC+AGG | - | Chr1:96272121-96272140 | None:intergenic | 40.0% | |
| GGGTTATGGTACACTTCTTA+TGG | + | Chr1:96272656-96272675 | MsG0180005800.01.T01:intron | 40.0% | |
| GTACAGCAGTTCCATAAACA+TGG | - | Chr1:96272347-96272366 | None:intergenic | 40.0% | |
| TGTTTATGGAACTGCTGTAC+CGG | + | Chr1:96272347-96272366 | MsG0180005800.01.T01:CDS | 40.0% | |
| TTAGCTCGAATGGAAGACTT+GGG | + | Chr1:96271717-96271736 | MsG0180005800.01.T01:exon | 40.0% | |
| ! | ATCACAATGCAGCTTTTCCA+AGG | + | Chr1:96272571-96272590 | MsG0180005800.01.T01:intron | 40.0% |
| !! | ATAGCTGTAATTTCTGGGGT+TGG | + | Chr1:96272723-96272742 | MsG0180005800.01.T01:CDS | 40.0% |
| ACCAGATTAACCAGAAGAGG+TGG | + | Chr1:96271912-96271931 | MsG0180005800.01.T01:intron | 45.0% | |
| AGACAGCACAACCAATGTCA+TGG | - | Chr1:96272220-96272239 | None:intergenic | 45.0% | |
| CACTACTTGTCCAGAGCTTA+TGG | + | Chr1:96272296-96272315 | MsG0180005800.01.T01:CDS | 45.0% | |
| CTTGAGCAGGATATCCTTGT+TGG | + | Chr1:96272243-96272262 | MsG0180005800.01.T01:intron | 45.0% | |
| GAACACTTACCCATAAGCTC+TGG | - | Chr1:96272309-96272328 | None:intergenic | 45.0% | |
| GGAGTTAGCATTAGCTCGAA+TGG | + | Chr1:96271707-96271726 | MsG0180005800.01.T01:exon | 45.0% | |
| GTCATATGAAGATACACGGC+AGG | + | Chr1:96271983-96272002 | MsG0180005800.01.T01:intron | 45.0% | |
| GTTCGTGAGCTCCATGTTTA+TGG | + | Chr1:96272333-96272352 | MsG0180005800.01.T01:CDS | 45.0% | |
| TAAGAGAGGCTGAGGAAAGA+AGG | - | Chr1:96272018-96272037 | None:intergenic | 45.0% | |
| TGGTACACTTCTTATGGAGG+AGG | + | Chr1:96272662-96272681 | MsG0180005800.01.T01:CDS | 45.0% | |
| TTCTGACAAGCTACAACACC+AGG | + | Chr1:96272382-96272401 | MsG0180005800.01.T01:intron | 45.0% | |
| TTGTTACGGCTGCGAAAATG+TGG | + | Chr1:96272267-96272286 | MsG0180005800.01.T01:CDS | 45.0% | |
| ! | GCTCTGGACAAGTAGTGTTA+CGG | - | Chr1:96272293-96272312 | None:intergenic | 45.0% |
| ! | GTGTGAGTCTAGTTTGTAGC+TGG | + | Chr1:96272087-96272106 | MsG0180005800.01.T01:intron | 45.0% |
| ! | TCCACCTCTTCTGGTTAATC+TGG | - | Chr1:96271916-96271935 | None:intergenic | 45.0% |
| CGAACAAGTTCCACCTCTTC+TGG | - | Chr1:96271925-96271944 | None:intergenic | 50.0% | |
| GCAGCCGTAACAAACCAACA+AGG | - | Chr1:96272260-96272279 | None:intergenic | 50.0% | |
| GGCACTAATAAGAGAGGCTG+AGG | - | Chr1:96272026-96272045 | None:intergenic | 50.0% | |
| TACCTGGATTCCAGCTTCTC+TGG | - | Chr1:96271766-96271785 | None:intergenic | 50.0% | |
| TGTGCTGTCTTCTCTTGAGC+AGG | + | Chr1:96272230-96272249 | MsG0180005800.01.T01:intron | 50.0% | |
| TTCTTATGGAGGAGGCTGAG+CGG | + | Chr1:96272670-96272689 | MsG0180005800.01.T01:CDS | 50.0% | |
| ! | GTCTAGTTTGTAGCTGGCAC+TGG | + | Chr1:96272093-96272112 | MsG0180005800.01.T01:intron | 50.0% |
| !! | GAACTGCTGTACCGGTTCAT+GGG | + | Chr1:96272355-96272374 | MsG0180005800.01.T01:intron | 50.0% |
| GACCAGAGAAGCTGGAATCC+AGG | + | Chr1:96271761-96271780 | MsG0180005800.01.T01:CDS | 55.0% | |
| GATGTTCGGACCAGAGAAGC+TGG | + | Chr1:96271753-96271772 | MsG0180005800.01.T01:CDS | 55.0% | |
| GTCAGAATCCGCCCATGAAC+CGG | - | Chr1:96272369-96272388 | None:intergenic | 55.0% | |
| !! | GGAACTGCTGTACCGGTTCA+TGG | + | Chr1:96272354-96272373 | MsG0180005800.01.T01:intron | 55.0% |
| !! | CTGCTGTACCGGTTCATGGG+CGG | + | Chr1:96272358-96272377 | MsG0180005800.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 96271687 | 96272870 | 96271687 | ID=MsG0180005800.01;Name=MsG0180005800.01 |
| Chr1 | mRNA | 96271687 | 96272870 | 96271687 | ID=MsG0180005800.01.T01;Parent=MsG0180005800.01;Name=MsG0180005800.01.T01;_AED=0.48;_eAED=0.48;_QI=39|0|0.66|1|1|1|3|55|110 |
| Chr1 | exon | 96271687 | 96271782 | 96271687 | ID=MsG0180005800.01.T01:exon:50481;Parent=MsG0180005800.01.T01 |
| Chr1 | exon | 96272252 | 96272368 | 96272252 | ID=MsG0180005800.01.T01:exon:50482;Parent=MsG0180005800.01.T01 |
| Chr1 | exon | 96272657 | 96272870 | 96272657 | ID=MsG0180005800.01.T01:exon:50483;Parent=MsG0180005800.01.T01 |
| Chr1 | five_prime_UTR | 96271687 | 96271725 | 96271687 | ID=MsG0180005800.01.T01:five_prime_utr;Parent=MsG0180005800.01.T01 |
| Chr1 | CDS | 96271726 | 96271782 | 96271726 | ID=MsG0180005800.01.T01:cds;Parent=MsG0180005800.01.T01 |
| Chr1 | CDS | 96272252 | 96272368 | 96272252 | ID=MsG0180005800.01.T01:cds;Parent=MsG0180005800.01.T01 |
| Chr1 | CDS | 96272657 | 96272815 | 96272657 | ID=MsG0180005800.01.T01:cds;Parent=MsG0180005800.01.T01 |
| Chr1 | three_prime_UTR | 96272816 | 96272870 | 96272816 | ID=MsG0180005800.01.T01:three_prime_utr;Parent=MsG0180005800.01.T01 |
| Gene Sequence |
| Protein sequence |
