AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045639.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045639.01.T01 MTR_8g075770 80.241 663 7 5 1 539 1 663 0.0 1016
MsG0880045639.01.T01 MTR_5g022240 59.652 689 131 8 1 544 1 687 0.0 760
MsG0880045639.01.T01 MTR_4g073830 52.977 655 190 9 1 539 1 653 0.0 648
MsG0880045639.01.T01 MTR_5g033190 34.163 603 303 11 9 532 14 601 6.48e-89 286
MsG0880045639.01.T01 MTR_4g105110 31.711 596 296 16 12 532 24 583 3.64e-69 233
MsG0880045639.01.T01 MTR_4g105110 31.711 596 296 16 12 532 23 582 4.44e-69 233
MsG0880045639.01.T01 MTR_0064s0050 49.770 217 76 3 1 185 1 216 1.51e-54 184
MsG0880045639.01.T01 MTR_0064s0010 49.038 208 73 3 1 176 1 207 9.81e-53 179
MsG0880045639.01.T01 MTR_1g046850 48.131 214 73 4 5 188 8 213 5.78e-48 170
MsG0880045639.01.T01 MTR_1g046850 66.667 66 21 1 121 185 227 292 2.54e-18 87.0
MsG0880045639.01.T01 MTR_0116s0040 40.212 189 74 4 1 157 1 182 2.66e-28 112
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045639.01.T01 AT5G66200 60.709 649 143 5 1 538 1 648 0.0 732
MsG0880045639.01.T01 AT4G34940 56.541 665 162 7 1 539 1 664 0.0 687
MsG0880045639.01.T01 AT4G36030 53.010 681 166 10 1 539 1 669 0.0 610
MsG0880045639.01.T01 AT3G26600 31.833 600 322 9 21 542 23 613 1.29e-79 262
MsG0880045639.01.T01 AT3G26600 35.000 260 132 3 319 542 274 532 5.89e-35 138
MsG0880045639.01.T01 AT3G26600 37.113 194 83 3 21 175 23 216 1.18e-28 120

Find 104 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCGTTGACTTTGCATTTA+AGG 0.041811 8:+62052464 MsG0880045638.01.T01:CDS
TCTTCCTATTGATGTAATTT+TGG 0.116183 8:+62050715 None:intergenic
CTTCTGCTGCTTTGCTTACT+TGG 0.155557 8:+62052656 MsG0880045638.01.T01:CDS
TGCGAAAGCAATTGGGTTAT+TGG 0.210952 8:-62052082 MsG0880045639.01.T01:CDS
ATTCCTTGTATCAAGGTTAT+TGG 0.217001 8:-62051159 MsG0880045639.01.T01:CDS
ATCTGATGCTGCTGCTTCTT+TGG 0.233722 8:-62052217 MsG0880045639.01.T01:CDS
AACGCCGATCTTCTCAATTC+AGG 0.288465 8:+62051261 None:intergenic
GGAGTTTGGCCAGGACATTC+AGG 0.300641 8:-62051137 MsG0880045639.01.T01:CDS
ACTAGCAAAAGCTGAGATTC+TGG 0.303673 8:-62050856 MsG0880045639.01.T01:CDS
TCTCATCTTGAGAATTCAAT+TGG 0.313541 8:-62052388 MsG0880045639.01.T01:CDS
CAATGGCTGCGAAAGCTCTT+AGG 0.319184 8:-62051437 MsG0880045639.01.T01:CDS
TTGCTCAGCATAATATTGTT+AGG 0.320910 8:-62051906 MsG0880045639.01.T01:CDS
TATCAAGGTTATTGGGAGTT+TGG 0.328721 8:-62051151 MsG0880045639.01.T01:CDS
TTCCTTGTATCAAGGTTATT+GGG 0.333782 8:-62051158 MsG0880045639.01.T01:CDS
ATTAAGATGCAGCATCCTTT+AGG 0.336683 8:-62051716 MsG0880045639.01.T01:CDS
TGCTTACTTGGTCAGCTAGT+TGG 0.339375 8:+62052668 MsG0880045638.01.T01:CDS
GCGAAAGCAATTGGGTTATT+GGG 0.348374 8:-62052081 MsG0880045639.01.T01:CDS
GAGAATGCTGCGAAAGCAAT+TGG 0.349165 8:-62052090 MsG0880045639.01.T01:CDS
TTGGTTCAGCTTGTGTATCT+AGG 0.352205 8:-62050951 MsG0880045639.01.T01:CDS
GCAACTGAAACAAGGATAAT+TGG 0.357865 8:-62051114 MsG0880045639.01.T01:CDS
ATTCAATTGGGGATGTTTCA+TGG 0.361909 8:-62052375 MsG0880045639.01.T01:CDS
ACAACAGCTTGAACTTTCAT+AGG 0.369367 8:+62051982 None:intergenic
GCTTCATCATGAGCCATGTT+AGG 0.369601 8:+62050807 None:intergenic
CTCATCTTGAGAATTCAATT+GGG 0.370800 8:-62052387 MsG0880045639.01.T01:CDS
GCTTTACAAGCAGGAGTGTT+TGG 0.388856 8:+62051234 None:intergenic
TGGCACGTGCAACGCAATAT+AGG 0.392263 8:+62050890 None:intergenic
TGTAAGGCAATTATAAGCTT+TGG 0.395487 8:-62050987 MsG0880045639.01.T01:intron
GATTCCAAAATTACATCAAT+AGG 0.403532 8:-62050719 MsG0880045639.01.T01:CDS
TGGTTCAGCTTGTGTATCTA+GGG 0.405199 8:-62050950 MsG0880045639.01.T01:CDS
TAAAGTTGTGGCAAGTACTA+TGG 0.408206 8:-62051669 MsG0880045639.01.T01:CDS
ACTCAATTTACTCCCTTCAT+TGG 0.408757 8:+62051613 None:intergenic
TTTGCTAGTTCTTCACTGTC+TGG 0.418688 8:+62050870 None:intergenic
AGATTCTGGGAGTTCTTGAA+TGG 0.421182 8:-62050842 MsG0880045639.01.T01:CDS
TTGAAAGAAGGTAAGAAAGA+AGG 0.434332 8:-62052117 MsG0880045639.01.T01:CDS
AGTGAAGTATAATTCTGCTT+TGG 0.436624 8:-62051319 MsG0880045639.01.T01:CDS
TGGGTTATTGGGTCGTGATC+CGG 0.442718 8:-62052070 MsG0880045639.01.T01:CDS
GTAAGCAAAGCAGCAGAAGA+AGG 0.443236 8:-62052652 MsG0880045639.01.T01:CDS
AGCTTGATCTTGCAGCTTGT+CGG 0.447365 8:+62052563 MsG0880045638.01.T01:CDS
GTAAAGCTCCAGCCTACTCT+TGG 0.452894 8:+62050761 None:intergenic
AGTTCAAGCTGTTGTAGCTT+GGG 0.453281 8:-62051974 MsG0880045639.01.T01:CDS
GCTTGAGGATGCCGAGAGTA+AGG 0.455737 8:-62051472 MsG0880045639.01.T01:CDS
AGCTCTTAGGTATTTAGCTA+AGG 0.459453 8:-62051424 MsG0880045639.01.T01:CDS
AACAAGCAACAAACCAATGA+AGG 0.467751 8:-62051626 MsG0880045639.01.T01:CDS
TGTTGGTCGTTCGTATAAAT+CGG 0.469596 8:+62052540 MsG0880045638.01.T01:CDS
TTCGCGAAGATTCTTAAAGA+AGG 0.472392 8:-62052006 MsG0880045639.01.T01:CDS
TTCAGTTGCCCTGAATGTCC+TGG 0.478968 8:+62051128 None:intergenic
GAGTTTAAACTCTCAACCTC+CGG 0.485410 8:-62051594 MsG0880045639.01.T01:intron
CTCTTGTTCGTGATAATGAT+CGG 0.486577 8:-62052191 MsG0880045639.01.T01:CDS
CTTTGGTGGTGTAAAACCCT+TGG 0.489322 8:-62050970 MsG0880045639.01.T01:CDS
ATCATAACCTCAACACTCTC+CGG 0.491666 8:+62052051 None:intergenic
AAGTTCAAGCTGTTGTAGCT+TGG 0.491997 8:-62051975 MsG0880045639.01.T01:CDS
CTAGCAAAAGCTGAGATTCT+GGG 0.492983 8:-62050855 MsG0880045639.01.T01:CDS
TTTGCAGACTTATCACCTAA+AGG 0.493122 8:+62051701 None:intergenic
GTCGTAGCATAACTGAATCA+AGG 0.494600 8:-62051386 MsG0880045639.01.T01:CDS
ACCAAGGCTGAATATTGAAC+TGG 0.499286 8:+62050921 None:intergenic
GCCAGTTCAATATTCAGCCT+TGG 0.499819 8:-62050922 MsG0880045639.01.T01:CDS
TTCGTGATAATGATCGGAAT+GGG 0.503368 8:-62052185 MsG0880045639.01.T01:CDS
CGACCAACACGTCGTATCAT+CGG 0.506890 8:-62052526 MsG0880045639.01.T01:CDS
TGAAAGAAGGTAAGAAAGAA+GGG 0.510994 8:-62052116 MsG0880045639.01.T01:CDS
GAGTTTGGCCAGGACATTCA+GGG 0.511848 8:-62051136 MsG0880045639.01.T01:CDS
GGGAAATTGATTATTGAAGA+GGG 0.514529 8:-62052165 MsG0880045639.01.T01:CDS
AGGTTATTGGGAGTTTGGCC+AGG 0.515595 8:-62051146 MsG0880045639.01.T01:CDS
AACAAGGATAATTGGTCCGT+TGG 0.519943 8:-62051106 MsG0880045639.01.T01:intron
TGGGAAATTGATTATTGAAG+AGG 0.520796 8:-62052166 MsG0880045639.01.T01:CDS
TTATTGAAGAGGGTGGTGTT+GGG 0.522924 8:-62052155 MsG0880045639.01.T01:CDS
AAGGCAATTATAAGCTTTGG+TGG 0.523348 8:-62050984 MsG0880045639.01.T01:CDS
GGCATCTAAGCAACCTAACA+TGG 0.529369 8:-62050820 MsG0880045639.01.T01:CDS
ACTTGGTCAGCTAGTTGGAT+CGG 0.531313 8:+62052673 MsG0880045638.01.T01:CDS
ATTATTGAAGAGGGTGGTGT+TGG 0.531709 8:-62052156 MsG0880045639.01.T01:CDS
AGAATGCTGCGAAAGCAATT+GGG 0.531737 8:-62052089 MsG0880045639.01.T01:CDS
GAATTATACTTCACTTCTTG+AGG 0.532839 8:+62051327 None:intergenic
CTCCCAATAACCTTGATACA+AGG 0.533183 8:+62051156 None:intergenic
TCAACAACCGCTTTACAAGC+AGG 0.535285 8:+62051225 None:intergenic
GTTCGTGATAATGATCGGAA+TGG 0.538777 8:-62052186 MsG0880045639.01.T01:CDS
TTTCATGTCAGCCTTACTCT+CGG 0.543304 8:+62051461 None:intergenic
GCTCTTAGGTATTTAGCTAA+GGG 0.547848 8:-62051423 MsG0880045639.01.T01:CDS
GCAAGAATCCAAGAGTAGGC+TGG 0.548621 8:-62050769 MsG0880045639.01.T01:CDS
GTCCTTAAATGCAAAGTCAA+CGG 0.550403 8:-62052466 MsG0880045639.01.T01:CDS
GGCTCATGATGAAGCTATTG+AGG 0.550672 8:-62050799 MsG0880045639.01.T01:CDS
TCATCTTGAGAATTCAATTG+GGG 0.560153 8:-62052386 MsG0880045639.01.T01:CDS
GATTCTGGGAGTTCTTGAAT+GGG 0.561370 8:-62050841 MsG0880045639.01.T01:CDS
GTTGAGGTTATGATTCATGC+TGG 0.574008 8:-62052042 MsG0880045639.01.T01:CDS
TCGTAGCATAACTGAATCAA+GGG 0.578811 8:-62051385 MsG0880045639.01.T01:CDS
TCTTTCAAAAGTTTCAGCAA+AGG 0.579129 8:+62052132 None:intergenic
CATGAAGGGAAGGGAGCTTG+AGG 0.579497 8:-62051487 MsG0880045639.01.T01:intron
AGATCCTGAATTGAGAAGAT+CGG 0.587428 8:-62051265 MsG0880045639.01.T01:CDS
ATCCTCGTGAACCTCTAGAC+TGG 0.598484 8:+62050739 None:intergenic
GGTTCAGCTTGTGTATCTAG+GGG 0.599727 8:-62050949 MsG0880045639.01.T01:CDS
CATTCAGGGCAACTGAAACA+AGG 0.602936 8:-62051122 MsG0880045639.01.T01:CDS
CTGGAGCTTTACCAGTCTAG+AGG 0.603436 8:-62050750 MsG0880045639.01.T01:CDS
AAATCAGATGCATAAAGTTG+TGG 0.616774 8:-62051681 MsG0880045639.01.T01:CDS
TCGTGATCCGGAGAGTGTTG+AGG 0.617482 8:-62052058 MsG0880045639.01.T01:CDS
ACAAGCAACAAACCAATGAA+GGG 0.626307 8:-62051625 MsG0880045639.01.T01:CDS
AAACACTCCTGCTTGTAAAG+CGG 0.627963 8:-62051232 MsG0880045639.01.T01:CDS
TAGATACACAAGCTGAACCA+AGG 0.635758 8:+62050953 None:intergenic
TGTTGCAAGAATCCAAGAGT+AGG 0.638612 8:-62050773 MsG0880045639.01.T01:CDS
TAAGGCTGACATGAAAGCAA+TGG 0.638661 8:-62051454 MsG0880045639.01.T01:CDS
AAGGCTGAATATTGAACTGG+CGG 0.644602 8:+62050924 None:intergenic
AGATACACAAGCTGAACCAA+GGG 0.658647 8:+62050954 None:intergenic
TCTCCGATGATACGACGTGT+TGG 0.665826 8:+62052523 MsG0880045638.01.T01:CDS
TACCAGTCTAGAGGTTCACG+AGG 0.671861 8:-62050741 MsG0880045639.01.T01:CDS
AAATTGATTATTGAAGAGGG+TGG 0.676552 8:-62052162 MsG0880045639.01.T01:CDS
ATTGAAAGAGATTACTGCAG+TGG 0.680776 8:-62051295 MsG0880045639.01.T01:CDS
AATATAGGATAGCAGAACCA+AGG 0.686714 8:+62050905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATGCAATTGTTAGTATA+AGG - Chr8:62051576-62051595 MsG0880045639.01.T01:intron 20.0%
!!! TTGCTATTTTACTTGAAAAA+GGG - Chr8:62052063-62052082 MsG0880045639.01.T01:CDS 20.0%
!!! TTTGCTATTTTACTTGAAAA+AGG - Chr8:62052062-62052081 MsG0880045639.01.T01:CDS 20.0%
! GATTCCAAAATTACATCAAT+AGG - Chr8:62052694-62052713 MsG0880045639.01.T01:CDS 25.0%
!! TCTTCCTATTGATGTAATTT+TGG + Chr8:62052701-62052720 MsG0880045638.01.T01:CDS 25.0%
AAATCAGATGCATAAAGTTG+TGG - Chr8:62051732-62051751 MsG0880045639.01.T01:CDS 30.0%
AAATTGATTATTGAAGAGGG+TGG - Chr8:62051251-62051270 MsG0880045639.01.T01:CDS 30.0%
AGTGAAGTATAATTCTGCTT+TGG - Chr8:62052094-62052113 MsG0880045639.01.T01:CDS 30.0%
ATTCCTTGTATCAAGGTTAT+TGG - Chr8:62052254-62052273 MsG0880045639.01.T01:CDS 30.0%
CTCATCTTGAGAATTCAATT+GGG - Chr8:62051026-62051045 MsG0880045639.01.T01:intron 30.0%
GAATTATACTTCACTTCTTG+AGG + Chr8:62052089-62052108 None:intergenic 30.0%
GCAAAAACATCTTGACATTT+AGG + Chr8:62051491-62051510 None:intergenic 30.0%
GGGAAATTGATTATTGAAGA+GGG - Chr8:62051248-62051267 MsG0880045639.01.T01:CDS 30.0%
TCATCTTGAGAATTCAATTG+GGG - Chr8:62051027-62051046 MsG0880045639.01.T01:intron 30.0%
TCCCAAATTAAACCCAAAAT+CGG + Chr8:62051137-62051156 None:intergenic 30.0%
TCTCATCTTGAGAATTCAAT+TGG - Chr8:62051025-62051044 MsG0880045639.01.T01:intron 30.0%
TCTTTCAAAAGTTTCAGCAA+AGG + Chr8:62051284-62051303 None:intergenic 30.0%
TGAAAGAAGGTAAGAAAGAA+GGG - Chr8:62051297-62051316 MsG0880045639.01.T01:CDS 30.0%
TGGGAAATTGATTATTGAAG+AGG - Chr8:62051247-62051266 MsG0880045639.01.T01:CDS 30.0%
TGTAAGGCAATTATAAGCTT+TGG - Chr8:62052426-62052445 MsG0880045639.01.T01:CDS 30.0%
TTCCTTGTATCAAGGTTATT+GGG - Chr8:62052255-62052274 MsG0880045639.01.T01:CDS 30.0%
TTGAAAGAAGGTAAGAAAGA+AGG - Chr8:62051296-62051315 MsG0880045639.01.T01:CDS 30.0%
TTGCTCAGCATAATATTGTT+AGG - Chr8:62051507-62051526 MsG0880045639.01.T01:intron 30.0%
! AGATTGCGATTTTGCATAAT+GGG - Chr8:62051159-62051178 MsG0880045639.01.T01:CDS 30.0%
!! ACTTTTGATTCCTTGTATCA+AGG - Chr8:62052247-62052266 MsG0880045639.01.T01:CDS 30.0%
!! GTATTCTGGAATTACATGAA+GGG - Chr8:62051912-62051931 MsG0880045639.01.T01:CDS 30.0%
!! TTGCTGAAACTTTTGAAAGA+AGG - Chr8:62051284-62051303 MsG0880045639.01.T01:CDS 30.0%
!!! AACCGATTTTGGGTTTAATT+TGG - Chr8:62051132-62051151 MsG0880045639.01.T01:CDS 30.0%
!!! ACCGATTTTGGGTTTAATTT+GGG - Chr8:62051133-62051152 MsG0880045639.01.T01:CDS 30.0%
!!! TATTGCTTTTGAAACTGTTC+AGG - Chr8:62051544-62051563 MsG0880045639.01.T01:intron 30.0%
!!! TGCTTTTTCAAGAACTTGTT+CGG + Chr8:62050918-62050937 None:intergenic 30.0%
AACAAGCAACAAACCAATGA+AGG - Chr8:62051787-62051806 MsG0880045639.01.T01:intron 35.0%
AAGGTAGCTATGAATGTCTT+GGG - Chr8:62051089-62051108 MsG0880045639.01.T01:intron 35.0%
AAGGTGAAGGTAGTTATCAT+TGG + Chr8:62052400-62052419 None:intergenic 35.0%
AATATAGGATAGCAGAACCA+AGG + Chr8:62052511-62052530 MsG0880045638.01.T01:CDS 35.0%
ACAACAGCTTGAACTTTCAT+AGG + Chr8:62051434-62051453 None:intergenic 35.0%
ACAAGCAACAAACCAATGAA+GGG - Chr8:62051788-62051807 MsG0880045639.01.T01:intron 35.0%
ACTCAATTTACTCCCTTCAT+TGG + Chr8:62051803-62051822 None:intergenic 35.0%
AGATCCTGAATTGAGAAGAT+CGG - Chr8:62052148-62052167 MsG0880045639.01.T01:CDS 35.0%
AGCTCTTAGGTATTTAGCTA+AGG - Chr8:62051989-62052008 MsG0880045639.01.T01:CDS 35.0%
ATGTGGCTAGTATTCCAAAT+GGG - Chr8:62051845-62051864 MsG0880045639.01.T01:intron 35.0%
ATTAAGATGCAGCATCCTTT+AGG - Chr8:62051697-62051716 MsG0880045639.01.T01:CDS 35.0%
ATTCAATTGGGGATGTTTCA+TGG - Chr8:62051038-62051057 MsG0880045639.01.T01:intron 35.0%
ATTGAAAGAGATTACTGCAG+TGG - Chr8:62052118-62052137 MsG0880045639.01.T01:CDS 35.0%
CTAGTATTCCAAATGGGAAT+GGG - Chr8:62051851-62051870 MsG0880045639.01.T01:CDS 35.0%
GCAACTGAAACAAGGATAAT+TGG - Chr8:62052299-62052318 MsG0880045639.01.T01:intron 35.0%
GCTCTTAGGTATTTAGCTAA+GGG - Chr8:62051990-62052009 MsG0880045639.01.T01:CDS 35.0%
GTCCTTAAATGCAAAGTCAA+CGG - Chr8:62050947-62050966 MsG0880045639.01.T01:CDS 35.0%
TAAAGTTGTGGCAAGTACTA+TGG - Chr8:62051744-62051763 MsG0880045639.01.T01:intron 35.0%
TAATTGCCTTACAGTGATCA+AGG + Chr8:62052419-62052438 None:intergenic 35.0%
TATCAAGGTTATTGGGAGTT+TGG - Chr8:62052262-62052281 MsG0880045639.01.T01:intron 35.0%
TCGTAGCATAACTGAATCAA+GGG - Chr8:62052028-62052047 MsG0880045639.01.T01:CDS 35.0%
TGTTGGTCGTTCGTATAAAT+CGG + Chr8:62050876-62050895 None:intergenic 35.0%
TTCAATTCATGCTGTTGTGT+TGG - Chr8:62051606-62051625 MsG0880045639.01.T01:CDS 35.0%
TTCGCGAAGATTCTTAAAGA+AGG - Chr8:62051407-62051426 MsG0880045639.01.T01:CDS 35.0%
TTTGCAGACTTATCACCTAA+AGG + Chr8:62051715-62051734 None:intergenic 35.0%
! AAATCGGTTCATTGAAGCAA+TGG + Chr8:62051121-62051140 None:intergenic 35.0%
! AAGGCAATTATAAGCTTTGG+TGG - Chr8:62052429-62052448 MsG0880045639.01.T01:CDS 35.0%
! CAGATTGCGATTTTGCATAA+TGG - Chr8:62051158-62051177 MsG0880045639.01.T01:CDS 35.0%
! CTCTTGTTCGTGATAATGAT+CGG - Chr8:62051222-62051241 MsG0880045639.01.T01:CDS 35.0%
! TTCGTGATAATGATCGGAAT+GGG - Chr8:62051228-62051247 MsG0880045639.01.T01:CDS 35.0%
!! AATGGGAATGGTAATGGTAA+CGG - Chr8:62051868-62051887 MsG0880045639.01.T01:CDS 35.0%
!! CGTATTCTGGAATTACATGA+AGG - Chr8:62051911-62051930 MsG0880045639.01.T01:CDS 35.0%
!! TGCTTCAATGAACCGATTTT+GGG - Chr8:62051122-62051141 MsG0880045639.01.T01:CDS 35.0%
!! TTGCTTCAATGAACCGATTT+TGG - Chr8:62051121-62051140 MsG0880045639.01.T01:CDS 35.0%
!!! GTTTTTCGGTTTTGGATTTG+AGG + Chr8:62050817-62050836 None:intergenic 35.0%
AAACACTCCTGCTTGTAAAG+CGG - Chr8:62052181-62052200 MsG0880045639.01.T01:CDS 40.0%
AACAAGGATAATTGGTCCGT+TGG - Chr8:62052307-62052326 MsG0880045639.01.T01:intron 40.0%
AAGCAAGGCTATTCGTATTC+TGG - Chr8:62051898-62051917 MsG0880045639.01.T01:CDS 40.0%
AAGGCTGAATATTGAACTGG+CGG + Chr8:62052492-62052511 MsG0880045638.01.T01:CDS 40.0%
AAGTTCAAGCTGTTGTAGCT+TGG - Chr8:62051438-62051457 MsG0880045639.01.T01:CDS 40.0%
AATGGGAATGGGAATGGTAA+TGG - Chr8:62051862-62051881 MsG0880045639.01.T01:CDS 40.0%
ACCAAGGCTGAATATTGAAC+TGG + Chr8:62052495-62052514 MsG0880045638.01.T01:CDS 40.0%
ACTAGCAAAAGCTGAGATTC+TGG - Chr8:62052557-62052576 MsG0880045639.01.T01:CDS 40.0%
AGAATGCTGCGAAAGCAATT+GGG - Chr8:62051324-62051343 MsG0880045639.01.T01:CDS 40.0%
AGAGAGGCTGATATCAAAAG+AGG - Chr8:62052347-62052366 MsG0880045639.01.T01:intron 40.0%
AGATACACAAGCTGAACCAA+GGG + Chr8:62052462-62052481 MsG0880045638.01.T01:CDS 40.0%
AGTTCAAGCTGTTGTAGCTT+GGG - Chr8:62051439-62051458 MsG0880045639.01.T01:CDS 40.0%
ATCATAACCTCAACACTCTC+CGG + Chr8:62051365-62051384 None:intergenic 40.0%
ATTATTGAAGAGGGTGGTGT+TGG - Chr8:62051257-62051276 MsG0880045639.01.T01:CDS 40.0%
ATTCCAAATGGGAATGGGAA+TGG - Chr8:62051856-62051875 MsG0880045639.01.T01:CDS 40.0%
CATGTGGCTAGTATTCCAAA+TGG - Chr8:62051844-62051863 MsG0880045639.01.T01:intron 40.0%
CTAGCAAAAGCTGAGATTCT+GGG - Chr8:62052558-62052577 MsG0880045639.01.T01:CDS 40.0%
CTCCCAATAACCTTGATACA+AGG + Chr8:62052260-62052279 None:intergenic 40.0%
CTGGAATTACATGAAGGGAA+GGG - Chr8:62051917-62051936 MsG0880045639.01.T01:CDS 40.0%
GAAGGTAGCTATGAATGTCT+TGG - Chr8:62051088-62051107 MsG0880045639.01.T01:intron 40.0%
GAGTTTAAACTCTCAACCTC+CGG - Chr8:62051819-62051838 MsG0880045639.01.T01:intron 40.0%
GCGAAAGCAATTGGGTTATT+GGG - Chr8:62051332-62051351 MsG0880045639.01.T01:CDS 40.0%
GCTAGTATTCCAAATGGGAA+TGG - Chr8:62051850-62051869 MsG0880045639.01.T01:CDS 40.0%
GTCGTAGCATAACTGAATCA+AGG - Chr8:62052027-62052046 MsG0880045639.01.T01:CDS 40.0%
GTGAAAAAAGAACGACGATG+AGG - Chr8:62051669-62051688 MsG0880045639.01.T01:CDS 40.0%
GTTGAGGTTATGATTCATGC+TGG - Chr8:62051371-62051390 MsG0880045639.01.T01:CDS 40.0%
TAAGGCTGACATGAAAGCAA+TGG - Chr8:62051959-62051978 MsG0880045639.01.T01:CDS 40.0%
TAGATACACAAGCTGAACCA+AGG + Chr8:62052463-62052482 MsG0880045638.01.T01:CDS 40.0%
TCATCAAGAAGTCGAACCAA+CGG + Chr8:62052326-62052345 None:intergenic 40.0%
TCGACTTCTTGATGAAAGAG+AGG - Chr8:62052331-62052350 MsG0880045639.01.T01:intron 40.0%
TGCGAAAGCAATTGGGTTAT+TGG - Chr8:62051331-62051350 MsG0880045639.01.T01:CDS 40.0%
TGGTTCAGCTTGTGTATCTA+GGG - Chr8:62052463-62052482 MsG0880045639.01.T01:CDS 40.0%
TGTTGCAAGAATCCAAGAGT+AGG - Chr8:62052640-62052659 MsG0880045639.01.T01:CDS 40.0%
TTACCATTCCCATTCCCATT+TGG + Chr8:62051862-62051881 None:intergenic 40.0%
TTATTGAAGAGGGTGGTGTT+GGG - Chr8:62051258-62051277 MsG0880045639.01.T01:CDS 40.0%
TTGGTTCAGCTTGTGTATCT+AGG - Chr8:62052462-62052481 MsG0880045639.01.T01:CDS 40.0%
TTTCATGTCAGCCTTACTCT+CGG + Chr8:62051955-62051974 None:intergenic 40.0%
! AGATTCTGGGAGTTCTTGAA+TGG - Chr8:62052571-62052590 MsG0880045639.01.T01:CDS 40.0%
! ATTTTACGAAAAGCTGCAGC+AGG + Chr8:62051001-62051020 None:intergenic 40.0%
! GAGAAGAGAAGCGAGTTTTT+CGG + Chr8:62050831-62050850 None:intergenic 40.0%
! GATTCTGGGAGTTCTTGAAT+GGG - Chr8:62052572-62052591 MsG0880045639.01.T01:CDS 40.0%
! GTTCGTGATAATGATCGGAA+TGG - Chr8:62051227-62051246 MsG0880045639.01.T01:CDS 40.0%
! TCTGGAATTACATGAAGGGA+AGG - Chr8:62051916-62051935 MsG0880045639.01.T01:CDS 40.0%
! TTTGCTAGTTCTTCACTGTC+TGG + Chr8:62052546-62052565 MsG0880045638.01.T01:CDS 40.0%
!! AGAAGCGAGTTTTTCGGTTT+TGG + Chr8:62050825-62050844 None:intergenic 40.0%
!! GACCGTTGACTTTGCATTTA+AGG + Chr8:62050952-62050971 None:intergenic 40.0%
AACGCCGATCTTCTCAATTC+AGG + Chr8:62052155-62052174 None:intergenic 45.0%
ACTTGGTCAGCTAGTTGGAT+CGG + Chr8:62050743-62050762 None:intergenic 45.0%
AGCTTGATCTTGCAGCTTGT+CGG + Chr8:62050853-62050872 None:intergenic 45.0%
CATTCAGGGCAACTGAAACA+AGG - Chr8:62052291-62052310 MsG0880045639.01.T01:intron 45.0%
CCTTACAGTGATCAAGGTGA+AGG + Chr8:62052413-62052432 None:intergenic 45.0%
CCTTCACCTTGATCACTGTA+AGG - Chr8:62052410-62052429 MsG0880045639.01.T01:CDS 45.0%
GAGAATGCTGCGAAAGCAAT+TGG - Chr8:62051323-62051342 MsG0880045639.01.T01:CDS 45.0%
GCCAGTTCAATATTCAGCCT+TGG - Chr8:62052491-62052510 MsG0880045639.01.T01:CDS 45.0%
GCTTCATCATGAGCCATGTT+AGG + Chr8:62052609-62052628 MsG0880045638.01.T01:CDS 45.0%
GGAATACTAGCCACATGAAC+CGG + Chr8:62051841-62051860 None:intergenic 45.0%
GGCATCTAAGCAACCTAACA+TGG - Chr8:62052593-62052612 MsG0880045639.01.T01:CDS 45.0%
GGCTCATGATGAAGCTATTG+AGG - Chr8:62052614-62052633 MsG0880045639.01.T01:CDS 45.0%
GGTTCAGCTTGTGTATCTAG+GGG - Chr8:62052464-62052483 MsG0880045639.01.T01:CDS 45.0%
GTAAGCAAAGCAGCAGAAGA+AGG - Chr8:62050761-62050780 MsG0880045639.01.T01:CDS 45.0%
TCAACAACCGCTTTACAAGC+AGG + Chr8:62052191-62052210 None:intergenic 45.0%
TCATAGCTACCTTCTTCAGC+CGG + Chr8:62051082-62051101 None:intergenic 45.0%
TCGGTTCATTGAAGCAATGG+TGG + Chr8:62051118-62051137 None:intergenic 45.0%
TGCTTACTTGGTCAGCTAGT+TGG + Chr8:62050748-62050767 None:intergenic 45.0%
! ATCTGATGCTGCTGCTTCTT+TGG - Chr8:62051196-62051215 MsG0880045639.01.T01:CDS 45.0%
!! CTTCTGCTGCTTTGCTTACT+TGG + Chr8:62050760-62050779 None:intergenic 45.0%
!! CTTTGGTGGTGTAAAACCCT+TGG - Chr8:62052443-62052462 MsG0880045639.01.T01:CDS 45.0%
!! GCTTTACAAGCAGGAGTGTT+TGG + Chr8:62052182-62052201 None:intergenic 45.0%
AGGTTATTGGGAGTTTGGCC+AGG - Chr8:62052267-62052286 MsG0880045639.01.T01:intron 50.0%
ATACTAGCCACATGAACCGG+AGG + Chr8:62051838-62051857 None:intergenic 50.0%
ATCCTCGTGAACCTCTAGAC+TGG + Chr8:62052677-62052696 MsG0880045638.01.T01:CDS 50.0%
CAATGGCTGCGAAAGCTCTT+AGG - Chr8:62051976-62051995 MsG0880045639.01.T01:CDS 50.0%
CGACCAACACGTCGTATCAT+CGG - Chr8:62050887-62050906 MsG0880045639.01.T01:CDS 50.0%
CTGGAGCTTTACCAGTCTAG+AGG - Chr8:62052663-62052682 MsG0880045639.01.T01:CDS 50.0%
GAGTTTGGCCAGGACATTCA+GGG - Chr8:62052277-62052296 MsG0880045639.01.T01:intron 50.0%
GCAAGAATCCAAGAGTAGGC+TGG - Chr8:62052644-62052663 MsG0880045639.01.T01:CDS 50.0%
GTAAAGCTCCAGCCTACTCT+TGG + Chr8:62052655-62052674 MsG0880045638.01.T01:CDS 50.0%
TACCAGTCTAGAGGTTCACG+AGG - Chr8:62052672-62052691 MsG0880045639.01.T01:CDS 50.0%
TCTCCGATGATACGACGTGT+TGG + Chr8:62050893-62050912 None:intergenic 50.0%
TGGCACGTGCAACGCAATAT+AGG + Chr8:62052526-62052545 MsG0880045638.01.T01:CDS 50.0%
TGGGTTATTGGGTCGTGATC+CGG - Chr8:62051343-62051362 MsG0880045639.01.T01:CDS 50.0%
TTCAGTTGCCCTGAATGTCC+TGG + Chr8:62052288-62052307 None:intergenic 50.0%
! GCTTCTTCGAGTTTCTGCTC+CGG - Chr8:62051060-62051079 MsG0880045639.01.T01:intron 50.0%
! GGTAACGGTAACACGAAGCA+AGG - Chr8:62051883-62051902 MsG0880045639.01.T01:CDS 50.0%
!! CATGCTGTTGTGTTGGCTAG+TGG - Chr8:62051613-62051632 MsG0880045639.01.T01:CDS 50.0%
CATGAAGGGAAGGGAGCTTG+AGG - Chr8:62051926-62051945 MsG0880045639.01.T01:CDS 55.0%
CTCTCAACCTCCGGTTCATG+TGG - Chr8:62051828-62051847 MsG0880045639.01.T01:intron 55.0%
GCTTGAGGATGCCGAGAGTA+AGG - Chr8:62051941-62051960 MsG0880045639.01.T01:CDS 55.0%
GGAGTTTGGCCAGGACATTC+AGG - Chr8:62052276-62052295 MsG0880045639.01.T01:intron 55.0%
GTTTCTGCTCCGGCTGAAGA+AGG - Chr8:62051070-62051089 MsG0880045639.01.T01:intron 55.0%
!! TCGTGATCCGGAGAGTGTTG+AGG - Chr8:62051355-62051374 MsG0880045639.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr8 gene 62050707 62052728 62050707 ID=MsG0880045639.01;Name=MsG0880045639.01
Chr8 mRNA 62050707 62052728 62050707 ID=MsG0880045639.01.T01;Parent=MsG0880045639.01;Name=MsG0880045639.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|0.75|0.6|5|0|547
Chr8 exon 62052366 62052728 62052366 ID=MsG0880045639.01.T01:exon:23710;Parent=MsG0880045639.01.T01
Chr8 exon 62051849 62052274 62051849 ID=MsG0880045639.01.T01:exon:23709;Parent=MsG0880045639.01.T01
Chr8 exon 62051595 62051756 62051595 ID=MsG0880045639.01.T01:exon:23708;Parent=MsG0880045639.01.T01
Chr8 exon 62051107 62051502 62051107 ID=MsG0880045639.01.T01:exon:23707;Parent=MsG0880045639.01.T01
Chr8 exon 62050707 62051003 62050707 ID=MsG0880045639.01.T01:exon:23706;Parent=MsG0880045639.01.T01
Chr8 CDS 62052366 62052728 62052366 ID=MsG0880045639.01.T01:cds;Parent=MsG0880045639.01.T01
Chr8 CDS 62051849 62052274 62051849 ID=MsG0880045639.01.T01:cds;Parent=MsG0880045639.01.T01
Chr8 CDS 62051595 62051756 62051595 ID=MsG0880045639.01.T01:cds;Parent=MsG0880045639.01.T01
Chr8 CDS 62051107 62051502 62051107 ID=MsG0880045639.01.T01:cds;Parent=MsG0880045639.01.T01
Chr8 CDS 62050707 62051003 62050707 ID=MsG0880045639.01.T01:cds;Parent=MsG0880045639.01.T01
Gene Sequence

>MsG0880045639.01.T01

ATGGCAGACATAGTGAAACAATTGTTAGCAAAACCGATCCAACTAGCTGACCAAGTAAGCAAAGCAGCAGAAGAAGGAAGCTCATCTTTCAAACAAGAATGTCTAGACCTCAAATCCAAAACCGAAAAACTCGCTTCTCTTCTCCGACAAGCTGCAAGATCAAGCTCCGATTTATACGAACGACCAACACGTCGTATCATCGGAGACACCGAACAAGTTCTTGAAAAAGCACTCACTTTAGTCCTTAAATGCAAAGTCAACGGTCTCATGAAACGTGTTTTCAGCATAGTTCCTGCTGCAGCTTTTCGTAAAATGTCTTCTCATCTTGAGAATTCAATTGGGGATGTTTCATGGCTTCTTCGAATTGCGATTTTGCATAATGGGTCGTTTGATGATCGATCTGATGCTGCTGCTTCTTTGGTTTCTCTTGTTCGTGATAATGATCGGAATGGGAAATTGATTATTGAAGAGGGTGGTGTTGGGCCTTTGCTGAAACTTTTGAAAGAAGGTAAGAAAGAAGGGCAAGAGAATGCTGCGAAAGCAATTGGGTTATTGGGTCGTGATCCGGAGAGTGTTGAGGTTATGATTCATGCTGGTGTTTGTTCTGTTTTCGCGAAGATTCTTAAAGAAGGTCCTATGAAAGTTCAAGCTGTTGTAGCTTGGGCTGTTTCTGAACTTGTTTCTAAGTATCCTAAATGTCAAGATGTTTTTGCTCAGCATAATATTGTTAGGTTGCTTGTTAGTCATATTGCTTTTGAAACTGTTCAGGAACACAGTAAATATGCAATTAACGACGATGAGGTGAAAATTAAGATGCAGCATCCTTTAGGTGATAAGTCTGCAAATCAGATGCATAAAGTTGTGGCAAGTACTATGGCAATGCATGCTGCGAATAATAACAAGCAACAAACCAATGAAGGGAGTAAATTGAGTTTAAACTCTCAACCTCCGGGAAGGGAGCTTGAGGATGCCGAGAGTAAGGCTGACATGAAAGCAATGGCTGCGAAAGCTCTTAGGTATTTAGCTAAGGGTAACTCGTCGATTTGTCGTAGCATAACTGAATCAAGGGCTTTGTTGTGTTTTGCTATTTTACTTGAAAAAGGGCCTCAAGAAGTGAAGTATAATTCTGCTTTGGCATTGAAAGAGATTACTGCAGTGGCTGAGAAAGATCCTGAATTGAGAAGATCGGCGTTTAAGCCAAACACTCCTGCTTGTAAAGCGGTTGTTGATCAAGTGATTGATATTATTGACAAAGAAGATGAGAGACTTTTGATTCCTTGTATCAAGGTTATTGGGAGTTTGGCCAGGACATTCAGGGCAACTGAAACAAGGATAATTGGTCCGTTGGCAATTATAAGCTTTGGTGGTGTAAAACCCTTGGTTCAGCTTGTGTATCTAGGGGAGCCGCCAGTTCAATATTCAGCCTTGGTTCTGCTATCCTATATTGCGTTGCACGTGCCAGACAGTGAAGAACTAGCAAAAGCTGAGATTCTGGGAGTTCTTGAATGGGCATCTAAGCAACCTAACATGGCTCATGATGAAGCTATTGAGGCATTGTTGCAAGAATCCAAGAGTAGGCTGGAGCTTTACCAGTCTAGAGGTTCACGAGGATTCCAAAATTACATCAATAGGAAGAGTAATTAG

Protein sequence

>MsG0880045639.01.T01

MADIVKQLLAKPIQLADQVSKAAEEGSSSFKQECLDLKSKTEKLASLLRQAARSSSDLYERPTRRIIGDTEQVLEKALTLVLKCKVNGLMKRVFSIVPAAAFRKMSSHLENSIGDVSWLLRIAILHNGSFDDRSDAAASLVSLVRDNDRNGKLIIEEGGVGPLLKLLKEGKKEGQENAAKAIGLLGRDPESVEVMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELVSKYPKCQDVFAQHNIVRLLVSHIAFETVQEHSKYAINDDEVKIKMQHPLGDKSANQMHKVVASTMAMHAANNNKQQTNEGSKLSLNSQPPGRELEDAESKADMKAMAAKALRYLAKGNSSICRSITESRALLCFAILLEKGPQEVKYNSALALKEITAVAEKDPELRRSAFKPNTPACKAVVDQVIDIIDKEDERLLIPCIKVIGSLARTFRATETRIIGPLAIISFGGVKPLVQLVYLGEPPVQYSALVLLSYIALHVPDSEELAKAEILGVLEWASKQPNMAHDEAIEALLQESKSRLELYQSRGSRGFQNYINRKSN*