AlfalfaGEDB | MsG0880043063.01

M. sativa cultivar ZhongmuNo.1 / MsG0880043063.01

KEGG: K00640
GO: GO:0005737 GO:0006535 GO:0009001 GO:0016740
PFAM: PF00132 PF06426

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043063.01.T01	XP_013444690.2	99.125	343	2	1	1	342	1	343	0	694

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043063.01.T01	Q42538	86.194	268	36	1	76	342	45	312	2.19E-168	474

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043063.01.T01	A0A396GM73	99.125	343	2	1	1	342	1	343	0.0	694

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048692.01	MsG0880043063.01	0.816469	5.441809e-52	3.859100e-49
MsG0380013888.01	MsG0880043063.01	0.815740	7.916526e-52	5.503922e-49
MsG0380013926.01	MsG0880043063.01	0.817431	3.310199e-52	2.410274e-49
MsG0380013941.01	MsG0880043063.01	0.811417	7.074014e-51	4.376485e-48
MsG0380013966.01	MsG0880043063.01	0.810414	1.166517e-50	7.026868e-48
MsG0380014026.01	MsG0880043063.01	0.805002	1.646907e-49	8.616023e-47
MsG0380014033.01	MsG0880043063.01	0.817360	3.433937e-52	2.495387e-49
MsG0480021054.01	MsG0880043063.01	0.815427	9.298767e-52	6.409061e-49
MsG0880043063.01	MsG0880045188.01	0.806151	9.456206e-50	5.095172e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043063.01.T01	MTR_8g028040	98.993	298	2	1	46	342	1	298	0.0	596
MsG0880043063.01.T01	MTR_3g058410	68.165	267	85	0	76	342	70	336	1.79e-134	386
MsG0880043063.01.T01	MTR_5g095470	61.538	273	105	0	70	342	49	321	3.53e-123	357
MsG0880043063.01.T01	MTR_5g023760	56.723	238	103	0	76	313	55	292	1.24e-97	292
MsG0880043063.01.T01	MTR_5g023760	56.723	238	103	0	76	313	55	292	2.24e-97	292

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880043063.01.T01	AT5G56760	86.194	268	36	1	76	342	45	312	2.24e-169	474
MsG0880043063.01.T01	AT1G55920	60.294	272	108	0	71	342	43	314	2.61e-121	352
MsG0880043063.01.T01	AT3G13110	61.798	267	102	0	76	342	125	391	7.91e-119	348
MsG0880043063.01.T01	AT4G35640	57.588	257	104	1	76	332	73	324	1.51e-95	288
MsG0880043063.01.T01	AT2G17640	55.253	257	110	1	76	332	36	287	2.34e-89	271

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Find 147 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGAAAAGTTATATGGAA+TGG	0.529724	8:-18353165	None:intergenic
AAAGTTATATGGAATGGTAT+AGG	0.456254	8:-18353159	None:intergenic
AACACTGGGTGGGACTGGAA+AGG	0.656173	8:+18355262	MsG0880043063.01.T01:CDS
AACCCGGCGAGATTGGTTGG+TGG	0.633827	8:+18355437	MsG0880043063.01.T01:CDS
AACGACGGCGGAGTGGTTGG+TGG	0.512184	8:-18353408	None:intergenic
AAGGCGCTAAGATTGGTGCC+GGG	0.618996	8:+18355369	MsG0880043063.01.T01:CDS
AAGTGAGTGTGATAGTGATG+AGG	0.625574	8:-18353280	None:intergenic
AATCTTAATATTACCCAGAA+TGG	0.498470	8:-18355342	None:intergenic
ACAGCAGCAGAACTTAGCGA+CGG	0.696865	8:-18353650	None:intergenic
ACCAACCACTCCGCCGTCGT+TGG	0.569894	8:+18353410	MsG0880043063.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCCTAATTATTCAGTTG+TGG	+	Chr8:18353807-18353826	MsG0880043063.01.T01:intron	30.0%
AACCACCAAATTGAAGAATT+AGG	-	Chr8:18354902-18354921	None:intergenic	30.0%
AACCCTAAATTTGAAGAATC+AGG	-	Chr8:18354822-18354841	None:intergenic	30.0%
AACCCTAATTATTCAGTTGT+GGG	+	Chr8:18353808-18353827	MsG0880043063.01.T01:intron	30.0%
AACCCTGATTCATAAATTTC+AGG	+	Chr8:18354857-18354876	MsG0880043063.01.T01:intron	30.0%
AATAGTTCAGAGACTAGATA+TGG	+	Chr8:18354697-18354716	MsG0880043063.01.T01:intron	30.0%
ACAACTGAATAATTAGGGTT+TGG	-	Chr8:18353808-18353827	None:intergenic	30.0%
ACCACCAAATTGAAGAATTA+GGG	-	Chr8:18354901-18354920	None:intergenic	30.0%
ACCATCAAAACAAATGAGAT+AGG	-	Chr8:18355628-18355647	None:intergenic	30.0%
ACTTAAAAGACAATCCAAAC+GGG	-	Chr8:18353942-18353961	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	18353045	18355770	18353045	ID=MsG0880043063.01;Name=MsG0880043063.01
Chr8	mRNA	18353045	18355770	18353045	ID=MsG0880043063.01.T01;Parent=MsG0880043063.01;Name=MsG0880043063.01.T01;_AED=0.45;_eAED=0.45;_QI=182\|1\|1\|1\|1\|1\|2\|220\|342
Chr8	exon	18353045	18353763	18353045	ID=MsG0880043063.01.T01:exon:3624;Parent=MsG0880043063.01.T01
Chr8	exon	18355059	18355770	18355059	ID=MsG0880043063.01.T01:exon:3625;Parent=MsG0880043063.01.T01
Chr8	five_prime_UTR	18353045	18353226	18353045	ID=MsG0880043063.01.T01:five_prime_utr;Parent=MsG0880043063.01.T01
Chr8	CDS	18353227	18353763	18353227	ID=MsG0880043063.01.T01:cds;Parent=MsG0880043063.01.T01
Chr8	CDS	18355059	18355550	18355059	ID=MsG0880043063.01.T01:cds;Parent=MsG0880043063.01.T01
Chr8	three_prime_UTR	18355551	18355770	18355551	ID=MsG0880043063.01.T01:three_prime_utr;Parent=MsG0880043063.01.T01

Gene Sequence

>MsG0880043063.01.T01

ATGTTGCAAATTTCATGCAATTATTTACATGCAAAATTCAAACCATATAATAACCTCATCACTATCACACTCACTTTCTCACCCCACCATTCCAATTTCTCACCCCCTCAACAAACCACCACAATCCGCCGATCAATGCCGACCGGCGAACTTCACTACACAACCCCACCAAAGGCGGCAACCACCAACCACTCCGCCGTCGTTGGTGCCTCCGACGAAGGCTGGCTATGGTCACAAATCAAAGCCGAAGCACGCCGCGACGCGGAATCGGAACCAGCCCTAGCAAGCTATCTCTACTCAACGATTCTCTCTCACTCTTCACTCGAACGTTCGCTTTCGTTTCATCTTGGTAACAAGCTTTGTTCTTCGACGCTTCTTTCGACGCTTCTTTATGACCTTTTTCTTAACGCTTTTGCGACTGATCCGTCGCTAAGTTCTGCTGCTGTTGCTGATCTTCGTGCTGCTCGTGAACGTGATCCTGCTTGTATCTCTTACTCTCACTGTTTGCTTAATTACAAGGGATTTCTTGCTTGTCAGGCGCACCGTGTGGCGCACCTATTGTGGAGGCAGGCTCGACAGCCGTTAGCACTAGCACTACATTCTCGCGTCGCTGATGTATTCGCGGTGGATATTCACCCGGCAGCGAGGATTGGCAAAGGGGTTTTGTTTGACCACGCCACAGGGGTAGTGGTGGGTGAGACGGCGGTGATTGGAAATAATGTGTCGATCCTGCACCATGTAACACTGGGTGGGACTGGAAAGGTTGGTGGGGATCGGCATCCCAAGATTGGAGATGGGGTGCTCATTGGTGCGGGTGCTACCATTCTGGGTAATATTAAGATTGGGGAAGGCGCTAAGATTGGTGCCGGGTCTGTTGTTTTGATTGATGTGCCGCCACGGACCACTGCGGTTGGTAACCCGGCGAGATTGGTTGGTGGTAAGGAGACGCCGTCTCAGCTTGAGGATGTGCCCGGGGAGTCCATGGACCATACTTCCTTTATCTCTGAGTGGTCTGATTATATCATTTAA

Protein sequence

>MsG0880043063.01.T01

MLQISCNYLHAKFKPYNNLITITLTFSPHHSNFSPPQQTTTIRRSMPTGELHYTTPPKAATTNHSAVVGASDEGWLWSQIKAEARRDAESEPALASYLYSTILSHSSLERSLSFHLGNKLCSSTLLSTLLYDLFLNAFATDPSLSSAAVADLRAARERDPACISYSHCLLNYKGFLACQAHRVAHLLWRQARQPLALALHSRVADVFAVDIHPAARIGKGVLFDHATGVVVGETAVIGNNVSILHHVTLGGTGKVGGDRHPKIGDGVLIGAGATILGNIKIGEGAKIGAGSVVLIDVPPRTTAVGNPARLVGGKETPSQLEDVPGESMDHTSFISEWSDYII*