AlfalfaGEDB | MsG0380013941.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013941.01

KEGG: K05581
GO: GO:0008137 GO:0016651 GO:0055114
PFAM: PF00329

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013941.01.T01	YP_009141599.1	100	158	0	0	1	158	1	158	7.10E-114	329

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013941.01.T01	B5LML3	98.734	158	2	0	1	158	1	158	2.11E-115	326

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013941.01.T01	A0A4P8F221	100.000	158	0	0	1	158	1	158	3.39e-114	329

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047967.01	MsG0380013941.01	0.852094	5.782029e-61	1.195079e-57
MsG0080048059.01	MsG0380013941.01	0.814366	1.597908e-51	1.070109e-48
MsG0080048302.01	MsG0380013941.01	-0.807368	5.231050e-50	2.908246e-47
MsG0080048560.01	MsG0380013941.01	0.852117	5.695570e-61	1.178043e-57
MsG0080048690.01	MsG0380013941.01	0.884691	1.545047e-71	1.029386e-67
MsG0080048691.01	MsG0380013941.01	0.845702	3.444491e-59	5.789996e-56
MsG0080048692.01	MsG0380013941.01	0.910249	2.313554e-82	4.681143e-78
MsG0080048693.01	MsG0380013941.01	0.852446	4.591570e-61	9.596775e-58
MsG0080048694.01	MsG0380013941.01	0.835441	1.675421e-56	2.048951e-53
MsG0080048695.01	MsG0380013941.01	0.835123	2.014962e-56	2.440644e-53
MsG0080048697.01	MsG0380013941.01	0.856961	2.258111e-62	5.483964e-59
MsG0080048698.01	MsG0380013941.01	0.892706	1.239286e-74	1.145573e-70
MsG0080048699.01	MsG0380013941.01	0.902655	7.759907e-79	1.110517e-74
MsG0080048800.01	MsG0380013941.01	0.817872	2.632195e-52	1.939845e-49
MsG0080048813.01	MsG0380013941.01	0.836576	8.631484e-57	1.092188e-53
MsG0080049076.01	MsG0380013941.01	0.890078	1.363642e-73	1.129409e-69
MsG0180001072.01	MsG0380013941.01	0.839641	1.402982e-57	1.949553e-54
MsG0180001925.01	MsG0380013941.01	0.864602	1.080410e-64	3.411879e-61
MsG0180002099.01	MsG0380013941.01	0.800596	1.338304e-48	6.256464e-46
MsG0180002214.01	MsG0380013941.01	0.832945	7.073639e-56	8.026918e-53
MsG0180002425.01	MsG0380013941.01	0.801770	7.696362e-49	3.706405e-46
MsG0180002426.01	MsG0380013941.01	0.829359	5.379255e-55	5.493421e-52
MsG0180002439.01	MsG0380013941.01	0.815094	1.102259e-51	7.527959e-49
MsG0180002546.01	MsG0380013941.01	0.846385	2.246104e-59	3.859501e-56
MsG0180003757.01	MsG0380013941.01	0.812402	4.316693e-51	2.742157e-48
MsG0180004226.01	MsG0380013941.01	0.815842	7.515325e-52	5.238811e-49
MsG0180004301.01	MsG0380013941.01	0.838202	3.308910e-57	4.399933e-54
MsG0180004505.01	MsG0380013941.01	0.825144	5.500161e-54	4.971977e-51
MsG0180004506.01	MsG0380013941.01	0.821198	4.587372e-53	3.707520e-50
MsG0180004586.01	MsG0380013941.01	0.806007	1.013926e-49	5.443359e-47
MsG0180004761.01	MsG0380013941.01	0.805796	1.122702e-49	5.994778e-47
MsG0180004957.01	MsG0380013941.01	0.813971	1.953103e-51	1.294019e-48
MsG0180005791.01	MsG0380013941.01	0.834898	2.296179e-56	2.762651e-53
MsG0180005817.01	MsG0380013941.01	0.831275	1.831060e-55	1.977315e-52
MsG0180006212.01	MsG0380013941.01	0.817577	3.067678e-52	2.242542e-49
MsG0280006336.01	MsG0380013941.01	0.805592	1.239094e-49	6.581434e-47
MsG0280006452.01	MsG0380013941.01	0.809697	1.664325e-50	9.839554e-48
MsG0280010695.01	MsG0380013941.01	0.843537	1.318507e-58	2.069345e-55
MsG0280010780.01	MsG0380013941.01	0.838434	2.883379e-57	3.861627e-54
MsG0280011301.01	MsG0380013941.01	0.808449	3.079945e-50	1.761652e-47
MsG0380012281.01	MsG0380013941.01	0.807801	4.232013e-50	2.379563e-47
MsG0380013448.01	MsG0380013941.01	0.879866	8.784234e-70	4.841199e-66
MsG0380013473.01	MsG0380013941.01	0.811407	7.109743e-51	4.397533e-48
MsG0380013887.01	MsG0380013941.01	0.818217	2.199332e-52	1.636231e-49
MsG0380013888.01	MsG0380013941.01	0.953443	2.712064e-111	7.135200e-106
MsG0380013890.01	MsG0380013941.01	0.805025	1.628674e-49	8.525539e-47
MsG0380013892.01	MsG0380013941.01	0.823154	1.614013e-53	1.378621e-50
MsG0380013914.01	MsG0380013941.01	0.824776	6.719420e-54	6.010635e-51
MsG0380013916.01	MsG0380013941.01	0.824573	7.501730e-54	6.671100e-51
MsG0380013917.01	MsG0380013941.01	0.864984	8.203443e-65	2.626277e-61
MsG0380013918.01	MsG0380013941.01	0.850744	1.392784e-60	2.755660e-57
MsG0380013919.01	MsG0380013941.01	0.820913	5.335517e-53	4.277895e-50
MsG0380013920.01	MsG0380013941.01	0.815958	7.080696e-52	4.951705e-49
MsG0380013921.01	MsG0380013941.01	0.860783	1.622970e-63	4.489702e-60
MsG0380013923.01	MsG0380013941.01	0.881727	1.887465e-70	1.118253e-66
MsG0380013925.01	MsG0380013941.01	0.817731	2.831683e-52	2.078917e-49
MsG0380013926.01	MsG0380013941.01	0.977136	3.505159e-143	6.189359e-137
MsG0380013928.01	MsG0380013941.01	0.835191	1.937199e-56	2.351481e-53
MsG0380013929.01	MsG0380013941.01	0.895169	1.237022e-75	1.268725e-71
MsG0380013931.01	MsG0380013941.01	0.912866	1.190874e-83	2.736946e-79
MsG0380013932.01	MsG0380013941.01	0.834713	2.555877e-56	3.057747e-53
MsG0380013935.01	MsG0380013941.01	0.823744	1.174858e-53	1.020496e-50
MsG0380013940.01	MsG0380013941.01	0.897861	9.319013e-77	1.073456e-72
MsG0380013941.01	MsG0380013942.01	0.913531	5.525885e-84	1.313192e-79
MsG0380013941.01	MsG0380013943.01	0.903945	2.052258e-79	3.102954e-75
MsG0380013941.01	MsG0380013944.01	0.908748	1.217351e-81	2.292997e-77
MsG0380013941.01	MsG0380013945.01	0.910175	2.511426e-82	5.065679e-78
MsG0380013941.01	MsG0380013946.01	0.805958	1.038006e-49	5.565675e-47
MsG0380013941.01	MsG0380013948.01	0.816148	6.420241e-52	4.513405e-49
MsG0380013941.01	MsG0380013951.01	0.925145	2.726780e-90	1.197352e-85
MsG0380013941.01	MsG0380013952.01	0.883799	3.305032e-71	2.126231e-67
MsG0380013941.01	MsG0380013953.01	0.894069	3.485454e-75	3.412358e-71
MsG0380013941.01	MsG0380013954.01	0.848666	5.299216e-60	9.797054e-57
MsG0380013941.01	MsG0380013956.01	0.868274	7.377559e-66	2.652971e-62
MsG0380013941.01	MsG0380013957.01	0.891820	2.801526e-74	2.495093e-70
MsG0380013941.01	MsG0380013959.01	0.819730	9.959967e-53	7.727394e-50
MsG0380013941.01	MsG0380013961.01	0.861975	7.028724e-64	2.025167e-60
MsG0380013941.01	MsG0380013962.01	0.874094	8.832051e-68	3.924155e-64
MsG0380013941.01	MsG0380013964.01	0.815538	8.783837e-52	6.072726e-49
MsG0380013941.01	MsG0380013966.01	0.932195	1.224732e-94	8.099286e-90
MsG0380013941.01	MsG0380013967.01	0.894316	2.766623e-75	2.736544e-71
MsG0380013941.01	MsG0380013968.01	0.921666	2.668027e-88	9.667917e-84
MsG0380013941.01	MsG0380013969.01	0.887073	1.964232e-72	1.439408e-68
MsG0380013941.01	MsG0380013971.01	0.891064	5.586864e-74	4.823969e-70
MsG0380013941.01	MsG0380013972.01	0.894461	2.413869e-75	2.402481e-71
MsG0380013941.01	MsG0380013975.01	0.862516	4.795878e-64	1.408385e-60
MsG0380013941.01	MsG0380013977.01	0.898763	3.855277e-77	4.624479e-73
MsG0380013941.01	MsG0380013978.01	0.844957	5.477456e-59	8.989121e-56
MsG0380013941.01	MsG0380013981.01	0.895006	1.442748e-75	1.469724e-71
MsG0380013941.01	MsG0380013983.01	0.847671	9.977464e-60	1.786784e-56
MsG0380013941.01	MsG0380013984.01	0.801200	1.007408e-48	4.782229e-46
MsG0380013941.01	MsG0380013986.01	0.809857	1.538066e-50	9.131148e-48
MsG0380013941.01	MsG0380013995.01	0.871128	8.650937e-67	3.450060e-63
MsG0380013941.01	MsG0380013997.01	0.816519	5.302871e-52	3.765823e-49
MsG0380013941.01	MsG0380013999.01	0.855043	8.219052e-62	1.872713e-58
MsG0380013941.01	MsG0380014004.01	0.856548	2.985736e-62	7.153176e-59
MsG0380013941.01	MsG0380014005.01	0.905064	6.369834e-80	1.012838e-75
MsG0380013941.01	MsG0380014006.01	0.886887	2.312982e-72	1.682228e-68
MsG0380013941.01	MsG0380014008.01	0.884013	2.754722e-71	1.787456e-67
MsG0380013941.01	MsG0380014016.01	0.803083	4.129390e-49	2.056160e-46
MsG0380013941.01	MsG0380014017.01	0.867196	1.635105e-65	5.659507e-62
MsG0380013941.01	MsG0380014018.01	0.884780	1.430901e-71	9.568626e-68
MsG0380013941.01	MsG0380014020.01	0.881761	1.834785e-70	1.088218e-66
MsG0380013941.01	MsG0380014021.01	0.847243	1.307914e-59	2.310360e-56
MsG0380013941.01	MsG0380014023.01	0.899228	2.438791e-77	2.987687e-73
MsG0380013941.01	MsG0380014024.01	0.835673	1.463542e-56	1.802326e-53
MsG0380013941.01	MsG0380014026.01	0.979581	2.775823e-148	6.067784e-142
MsG0380013941.01	MsG0380014027.01	0.808799	2.593834e-50	1.497079e-47
MsG0380013941.01	MsG0380014028.01	0.813403	2.605579e-51	1.700005e-48
MsG0380013941.01	MsG0380014029.01	0.826207	3.079785e-54	2.869351e-51
MsG0380013941.01	MsG0380014030.01	0.800384	1.478168e-48	6.873486e-46
MsG0380013941.01	MsG0380014032.01	0.907265	6.104660e-81	1.075020e-76
MsG0380013941.01	MsG0380014033.01	0.923481	2.510750e-89	1.007185e-84
MsG0380013941.01	MsG0380014034.01	0.845296	4.436463e-59	7.359778e-56
MsG0380013941.01	MsG0380014035.01	0.806131	9.548711e-50	5.142354e-47
MsG0380013941.01	MsG0380014036.01	0.837548	4.872322e-57	6.350464e-54
MsG0380013941.01	MsG0380014039.01	0.903835	2.298756e-79	3.460721e-75
MsG0380013941.01	MsG0380014040.01	0.904947	7.199784e-80	1.139129e-75
MsG0380013941.01	MsG0380014044.01	0.814241	1.703107e-51	1.136694e-48
MsG0380013941.01	MsG0380014046.01	0.827146	1.838059e-54	1.759353e-51
MsG0380013941.01	MsG0380014050.01	0.822532	2.252725e-53	1.890690e-50
MsG0380013941.01	MsG0380014051.01	0.903871	2.216130e-79	3.341509e-75
MsG0380013941.01	MsG0380014054.01	0.849091	4.039396e-60	7.572482e-57
MsG0380013941.01	MsG0380014057.01	0.866367	3.003757e-65	1.009809e-61
MsG0380013941.01	MsG0380015201.01	0.811112	8.239375e-51	5.056588e-48
MsG0380013941.01	MsG0380015348.01	0.847987	8.164472e-60	1.476662e-56
MsG0380013941.01	MsG0380015439.01	0.806282	8.871236e-50	4.796002e-47
MsG0380013941.01	MsG0380015697.01	0.812059	5.129153e-51	3.227816e-48
MsG0380013941.01	MsG0380016424.01	0.836721	7.925266e-57	1.007286e-53
MsG0380013941.01	MsG0380016790.01	0.807860	4.112405e-50	2.315763e-47
MsG0380013941.01	MsG0380016881.01	0.811867	5.646181e-51	3.534895e-48
MsG0380013941.01	MsG0380016931.01	0.820187	7.831081e-53	6.153632e-50
MsG0380013941.01	MsG0380016935.01	0.810804	9.604736e-51	5.846505e-48
MsG0380013941.01	MsG0380017007.01	0.922555	8.438851e-89	3.213085e-84
MsG0380013941.01	MsG0380017405.01	0.830552	2.753494e-55	2.910565e-52
MsG0380013941.01	MsG0380017406.01	0.815506	8.927528e-52	6.166843e-49
MsG0380013941.01	MsG0380017962.01	0.808854	2.524494e-50	1.459204e-47
MsG0380013941.01	MsG0380018047.01	0.815027	1.140882e-51	7.777983e-49
MsG0380013941.01	MsG0480018296.01	0.905798	2.933668e-80	4.822489e-76
MsG0380013941.01	MsG0480019861.01	0.800707	1.270425e-48	5.955635e-46
MsG0380013941.01	MsG0480019975.01	0.816519	5.302871e-52	3.765823e-49
MsG0380013941.01	MsG0480020052.01	0.827868	1.233072e-54	1.205430e-51
MsG0380013941.01	MsG0480021054.01	0.836987	6.779470e-57	8.685985e-54
MsG0380013941.01	MsG0480021205.01	0.809350	1.976435e-50	1.157775e-47
MsG0380013941.01	MsG0480021327.01	0.842199	2.991146e-58	4.501013e-55
MsG0380013941.01	MsG0480021331.01	0.851795	7.033543e-61	1.439893e-57
MsG0380013941.01	MsG0480021476.01	0.835921	1.266304e-56	1.571068e-53
MsG0380013941.01	MsG0480021912.01	0.847181	1.360749e-59	2.398834e-56
MsG0380013941.01	MsG0480022125.01	-0.801139	1.036563e-48	4.913284e-46
MsG0380013941.01	MsG0480022591.01	0.844890	5.711165e-59	9.352096e-56
MsG0380013941.01	MsG0480023481.01	0.805508	1.290646e-49	6.840186e-47
MsG0380013941.01	MsG0580024309.01	0.804673	1.929831e-49	1.001072e-46
MsG0380013941.01	MsG0580024570.01	0.830509	2.821735e-55	2.978947e-52
MsG0380013941.01	MsG0580027677.01	0.899903	1.249733e-77	1.576872e-73
MsG0380013941.01	MsG0580029583.01	-0.824821	6.555786e-54	5.871818e-51
MsG0380013941.01	MsG0580029792.01	0.802955	4.388487e-49	2.178150e-46
MsG0380013941.01	MsG0580030197.01	0.810485	1.125905e-50	6.795223e-48
MsG0380013941.01	MsG0580030237.01	0.806565	7.734694e-50	4.211781e-47
MsG0380013941.01	MsG0680030439.01	0.838949	2.122073e-57	2.886786e-54
MsG0380013941.01	MsG0680030756.01	0.802418	5.662702e-49	2.772618e-46
MsG0380013941.01	MsG0680031813.01	0.814762	1.306263e-51	8.841487e-49
MsG0380013941.01	MsG0680034229.01	0.812714	3.689726e-51	2.363097e-48
MsG0380013941.01	MsG0680035841.01	-0.806348	8.594255e-50	4.653921e-47
MsG0380013941.01	MsG0780036068.01	0.810332	1.215001e-50	7.303185e-48
MsG0380013941.01	MsG0780038047.01	0.831446	1.661644e-55	1.803678e-52
MsG0380013941.01	MsG0780038197.01	0.876729	1.107995e-68	5.429620e-65
MsG0380013941.01	MsG0780038198.01	0.801872	7.335649e-49	3.542068e-46
MsG0380013941.01	MsG0780039838.01	0.805114	1.560493e-49	8.187483e-47
MsG0380013941.01	MsG0780039839.01	0.803036	4.222040e-49	2.099856e-46
MsG0380013941.01	MsG0780040121.01	0.826805	2.216936e-54	2.100966e-51
MsG0380013941.01	MsG0780040316.01	0.859475	4.031947e-63	1.066227e-59
MsG0380013941.01	MsG0780040317.01	0.817741	2.817719e-52	2.069204e-49
MsG0380013941.01	MsG0780041121.01	0.808611	2.844516e-50	1.633702e-47
MsG0380013941.01	MsG0780041173.01	0.807497	4.910700e-50	2.739471e-47
MsG0380013941.01	MsG0780041254.01	0.800135	1.660998e-48	7.674813e-46
MsG0380013941.01	MsG0780041296.01	0.809133	2.200175e-50	1.281338e-47
MsG0380013941.01	MsG0780041637.01	0.824296	8.716889e-54	7.689179e-51
MsG0380013941.01	MsG0780041720.01	0.824480	7.887973e-54	6.995232e-51
MsG0380013941.01	MsG0780041783.01	0.821212	4.551452e-53	3.679894e-50
MsG0380013941.01	MsG0880042291.01	0.804561	2.036611e-49	1.053389e-46
MsG0380013941.01	MsG0880042858.01	0.801722	7.872418e-49	3.786574e-46
MsG0380013941.01	MsG0880043063.01	0.811417	7.074014e-51	4.376485e-48
MsG0380013941.01	MsG0880043069.01	0.813302	2.741845e-51	1.783908e-48
MsG0380013941.01	MsG0880044440.01	0.831862	1.311875e-55	1.441831e-52
MsG0380013941.01	MsG0880045097.01	0.861759	8.185051e-64	2.340678e-60
MsG0380013941.01	MsG0880045188.01	0.839735	1.326795e-57	1.848915e-54
MsG0380013941.01	MsG0880045369.01	0.800959	1.128213e-48	5.323458e-46
MsG0380013941.01	MsG0880045385.01	0.812376	4.374499e-51	2.776688e-48
MsG0380013941.01	MsG0880045413.01	0.812262	4.631026e-51	2.930700e-48
MsG0380013941.01	MsG0880045630.01	0.864810	9.302925e-65	2.959275e-61
MsG0380013941.01	MsG0880046219.01	0.804579	2.018825e-49	1.044701e-46
MsG0380013941.01	MsG0880046469.01	0.833054	6.648223e-56	7.569276e-53
MsG0380013941.01	MsG0880047318.01	0.823083	1.676690e-53	1.429383e-50
MsG0280006475.01	MsG0380013941.01	0.843162	1.660522e-58	2.575191e-55
MsG0280007042.01	MsG0380013941.01	0.802383	5.758266e-49	2.816905e-46
MsG0280007650.01	MsG0380013941.01	0.802220	6.221181e-49	3.030500e-46
MsG0280009541.01	MsG0380013941.01	0.811410	7.098558e-51	4.390999e-48
MsG0280009742.01	MsG0380013941.01	0.804034	2.622314e-49	1.338143e-46
MsG0280009776.01	MsG0380013941.01	0.801729	7.849027e-49	3.775953e-46
MsG0280009971.01	MsG0380013941.01	-0.845296	4.436964e-59	7.360554e-56
MsG0280010137.01	MsG0380013941.01	0.853515	2.270912e-61	4.919597e-58
MsG0280010140.01	MsG0380013941.01	0.855470	6.175341e-62	1.427292e-58
MsG0280010142.01	MsG0380013941.01	0.821980	3.025291e-53	2.499160e-50
MsG0280010143.01	MsG0380013941.01	0.838633	2.560786e-57	3.450585e-54
MsG0280010144.01	MsG0380013941.01	0.833170	6.218679e-56	7.104757e-53
MsG0280010145.01	MsG0380013941.01	0.903442	3.455005e-79	5.116893e-75

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013941.01.T01	MTR_7g021800	99.367	158	1	1	158	1	158	3.47e-117	328
MsG0380013941.01.T01	MTR_4g035040	99.367	158	1	1	158	1	158	3.47e-117	328
MsG0380013941.01.T01	MTR_0002s0630	87.898	157	19	2	158	162	318	1.60e-102	296

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013941.01.T01	ATCG00420	89.241	158	17	0	1	158	1	158	2.45e-106	300

Find 26 sgRNAs with CRISPR-Local

Find 44 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CGGAATAGTTCATAGATCTT+TGG	0.225646	3:-48475205	MsG0380013941.01.T01:CDS
GGCCATCCTATCCAACTTTC+GGG	0.254679	3:+48474841	None:intergenic
GGAATAGTTCATAGATCTTT+GGG	0.328701	3:-48475204	MsG0380013941.01.T01:CDS
AGGCCATCCTATCCAACTTT+CGG	0.340000	3:+48474840	None:intergenic
TTCCAAACCCAGAAAATAGA+AGG	0.366444	3:+48474949	None:intergenic
TGCAGGGTCATTTGTCTGCT+TGG	0.409987	3:-48475239	MsG0380013941.01.T01:CDS
AGGGAATCTTATGATATGTT+AGG	0.415137	3:-48474907	MsG0380013941.01.T01:CDS
TTTGTAAAGTCTCTATTCCT+TGG	0.436961	3:+48475172	None:intergenic
TGCTACATCATAGGCACATT+GGG	0.447727	3:+48475083	None:intergenic
TCCTCCTGGTGCTACATCAT+AGG	0.453068	3:+48475074	None:intergenic
TACAAATAAAGCCCGAGGAT+TGG	0.464528	3:-48475155	MsG0380013941.01.T01:CDS
CAGAAAATAGAAGGAATTCT+CGG	0.478109	3:+48474958	None:intergenic
AGCAATCGAATGCCAATCCT+CGG	0.513209	3:+48475143	None:intergenic
TGCCCGAAAGTTGGATAGGA+TGG	0.516198	3:-48474843	MsG0380013941.01.T01:CDS
GTGCTACATCATAGGCACAT+TGG	0.546406	3:+48475082	None:intergenic
TTAATGCCCGAAAGTTGGAT+AGG	0.556642	3:-48474847	MsG0380013941.01.T01:CDS
ACACTAGCTAATAGTCCTCC+TGG	0.563367	3:+48475060	None:intergenic
GCAATCGAATGCCAATCCTC+GGG	0.577805	3:+48475144	None:intergenic
TGTGCCTATGATGTAGCACC+AGG	0.591745	3:-48475078	MsG0380013941.01.T01:CDS
GCGATATAATCTTTACGCAA+AGG	0.602633	3:+48474820	None:intergenic
GCATAAAAGTATTTGCCCCA+AGG	0.613297	3:-48474987	MsG0380013941.01.T01:CDS
TAGTTTAGATCAACCCGAAG+AGG	0.615869	3:-48475013	MsG0380013941.01.T01:CDS
ATTAAAATACGTTTCAGACG+CGG	0.619896	3:+48474865	None:intergenic
GACTTTACAAATAAAGCCCG+AGG	0.624427	3:-48475160	MsG0380013941.01.T01:CDS
TCTGCTTGGCTAGTCAAACA+CGG	0.639180	3:-48475225	MsG0380013941.01.T01:CDS
GCCTATGATGTAGCACCAGG+AGG	0.695694	3:-48475075	MsG0380013941.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATCCTGTATTTCATAAAAAT+TGG	+	Chr3:48475234-48475253	None:intergenic	20.0%
!!	TCCTGTATTTCATAAAAATT+GGG	+	Chr3:48475233-48475252	None:intergenic	20.0%
!!!	GCTGTTATTTTATATGTATA+TGG	-	Chr3:48474903-48474922	MsG0380013941.01.T01:CDS	20.0%
!	CCTGTATTTCATAAAAATTG+GGG	+	Chr3:48475232-48475251	None:intergenic	25.0%
!	CTGTATTTCATAAAAATTGG+GGG	+	Chr3:48475231-48475250	None:intergenic	25.0%
	AGGGAATCTTATGATATGTT+AGG	-	Chr3:48475119-48475138	MsG0380013941.01.T01:CDS	30.0%
	ATTAAAATACGTTTCAGACG+CGG	+	Chr3:48475164-48475183	None:intergenic	30.0%
	CAGAAAATAGAAGGAATTCT+CGG	+	Chr3:48475071-48475090	None:intergenic	30.0%
	GGAATAGTTCATAGATCTTT+GGG	-	Chr3:48474822-48474841	MsG0380013941.01.T01:CDS	30.0%
	TTTGTAAAGTCTCTATTCCT+TGG	+	Chr3:48474857-48474876	None:intergenic	30.0%
!	CCCCAATTTTTATGAAATAC+AGG	-	Chr3:48475229-48475248	MsG0380013941.01.T01:CDS	30.0%
!	GAGAATTCCTTCTATTTTCT+GGG	-	Chr3:48475070-48475089	MsG0380013941.01.T01:CDS	30.0%
!	TACTTTTATGCATACCTCTT+CGG	+	Chr3:48475030-48475049	None:intergenic	30.0%
!!!	AAAGTGCTGATTTTCAAGAA+AGG	-	Chr3:48475099-48475118	MsG0380013941.01.T01:CDS	30.0%
!!!	AAGTGCTGATTTTCAAGAAA+GGG	-	Chr3:48475100-48475119	MsG0380013941.01.T01:CDS	30.0%
	CGGAATAGTTCATAGATCTT+TGG	-	Chr3:48474821-48474840	MsG0380013941.01.T01:CDS	35.0%
	GCGATATAATCTTTACGCAA+AGG	+	Chr3:48475209-48475228	None:intergenic	35.0%
	TTCCAAACCCAGAAAATAGA+AGG	+	Chr3:48475080-48475099	None:intergenic	35.0%
!	ACTTTTATGCATACCTCTTC+GGG	+	Chr3:48475029-48475048	None:intergenic	35.0%
!	CGAGAATTCCTTCTATTTTC+TGG	-	Chr3:48475069-48475088	MsG0380013941.01.T01:CDS	35.0%
!	TTCCTTCTATTTTCTGGGTT+TGG	-	Chr3:48475075-48475094	MsG0380013941.01.T01:CDS	35.0%
!!!	GTATTTTAATGCCCGAAAGT+TGG	-	Chr3:48475174-48475193	MsG0380013941.01.T01:CDS	35.0%
!!!	TCTTTGGGTTTTGATTACCA+AGG	-	Chr3:48474837-48474856	MsG0380013941.01.T01:CDS	35.0%
	GACTTTACAAATAAAGCCCG+AGG	-	Chr3:48474866-48474885	MsG0380013941.01.T01:CDS	40.0%
	TACAAATAAAGCCCGAGGAT+TGG	-	Chr3:48474871-48474890	MsG0380013941.01.T01:CDS	40.0%
	TAGTTTAGATCAACCCGAAG+AGG	-	Chr3:48475013-48475032	MsG0380013941.01.T01:CDS	40.0%
	TGCTACATCATAGGCACATT+GGG	+	Chr3:48474946-48474965	None:intergenic	40.0%
	TTAATGCCCGAAAGTTGGAT+AGG	-	Chr3:48475179-48475198	MsG0380013941.01.T01:CDS	40.0%
!	AATTCTCGGATTTTGCCTTG+GGG	+	Chr3:48475057-48475076	None:intergenic	40.0%
!	GAATTCTCGGATTTTGCCTT+GGG	+	Chr3:48475058-48475077	None:intergenic	40.0%
!!	GCATAAAAGTATTTGCCCCA+AGG	-	Chr3:48475039-48475058	MsG0380013941.01.T01:CDS	40.0%
	ACACTAGCTAATAGTCCTCC+TGG	+	Chr3:48474969-48474988	None:intergenic	45.0%
	AGCAATCGAATGCCAATCCT+CGG	+	Chr3:48474886-48474905	None:intergenic	45.0%
	AGGCCATCCTATCCAACTTT+CGG	+	Chr3:48475189-48475208	None:intergenic	45.0%
	GTGCTACATCATAGGCACAT+TGG	+	Chr3:48474947-48474966	None:intergenic	45.0%
!	GGAATTCTCGGATTTTGCCT+TGG	+	Chr3:48475059-48475078	None:intergenic	45.0%
!	TCTGCTTGGCTAGTCAAACA+CGG	-	Chr3:48474801-48474820	MsG0380013941.01.T01:CDS	45.0%
	GCAATCGAATGCCAATCCTC+GGG	+	Chr3:48474885-48474904	None:intergenic	50.0%
	GGCCATCCTATCCAACTTTC+GGG	+	Chr3:48475188-48475207	None:intergenic	50.0%
	TGCAGGGTCATTTGTCTGCT+TGG	-	Chr3:48474787-48474806	MsG0380013941.01.T01:CDS	50.0%
	TGCCCGAAAGTTGGATAGGA+TGG	-	Chr3:48475183-48475202	MsG0380013941.01.T01:CDS	50.0%
	TGTGCCTATGATGTAGCACC+AGG	-	Chr3:48474948-48474967	MsG0380013941.01.T01:CDS	50.0%
!!	TCCTCCTGGTGCTACATCAT+AGG	+	Chr3:48474955-48474974	None:intergenic	50.0%
	GCCTATGATGTAGCACCAGG+AGG	-	Chr3:48474951-48474970	MsG0380013941.01.T01:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	48474786	48475262	48474786	ID=MsG0380013941.01;Name=MsG0380013941.01
Chr3	mRNA	48474786	48475262	48474786	ID=MsG0380013941.01.T01;Parent=MsG0380013941.01;Name=MsG0380013941.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|158
Chr3	exon	48474786	48475262	48474786	ID=MsG0380013941.01.T01:exon:11313;Parent=MsG0380013941.01.T01
Chr3	CDS	48474786	48475262	48474786	ID=MsG0380013941.01.T01:cds;Parent=MsG0380013941.01.T01

Gene Sequence

>MsG0380013941.01.T01

ATGCAGGGTCATTTGTCTGCTTGGCTAGTCAAACACGGAATAGTTCATAGATCTTTGGGTTTTGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCGAGGATTGGCATTCGATTGCTGTTATTTTATATGTATATGGTTACAATTATCTACGTTCCCAATGTGCCTATGATGTAGCACCAGGAGGACTATTAGCTAGTGTCTATCATCTTACGAGAATAGAGTATAGTTTAGATCAACCCGAAGAGGTATGCATAAAAGTATTTGCCCCAAGGCAAAATCCGAGAATTCCTTCTATTTTCTGGGTTTGGAAAAGTGCTGATTTTCAAGAAAGGGAATCTTATGATATGTTAGGAATCTCTTATGATAATCATCCGCGTCTGAAACGTATTTTAATGCCCGAAAGTTGGATAGGATGGCCTTTGCGTAAAGATTATATCGCCCCCAATTTTTATGAAATACAGGATGCTCACTAA

Protein sequence

>MsG0380013941.01.T01

MQGHLSAWLVKHGIVHRSLGFDYQGIETLQIKPEDWHSIAVILYVYGYNYLRSQCAYDVAPGGLLASVYHLTRIEYSLDQPEEVCIKVFAPRQNPRIPSIFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDYIAPNFYEIQDAH*