AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043088.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043088.01.T01 MTR_2g010270 81.048 248 25 2 9 234 32 279 1.31e-143 412
MsG0880043088.01.T01 MTR_5g030110 83.682 239 26 1 9 234 51 289 2.76e-143 412
MsG0880043088.01.T01 MTR_2g007410 83.682 239 26 1 9 234 51 289 2.76e-143 412
MsG0880043088.01.T01 MTR_8g446640 83.264 239 27 1 9 234 32 270 9.12e-143 410
MsG0880043088.01.T01 MTR_7g024060 83.264 239 27 1 9 234 51 289 1.37e-142 410
MsG0880043088.01.T01 MTR_6g087820 83.264 239 27 1 9 234 51 289 1.37e-142 410
MsG0880043088.01.T01 MTR_5g081190 83.264 239 27 1 9 234 51 289 1.37e-142 410
MsG0880043088.01.T01 MTR_5g091480 83.264 239 27 1 9 234 51 289 1.37e-142 410
MsG0880043088.01.T01 MTR_5g056290 83.264 239 27 1 9 234 51 289 1.37e-142 410
MsG0880043088.01.T01 MTR_3g031190 83.264 239 27 1 9 234 51 289 1.37e-142 410
MsG0880043088.01.T01 MTR_2g005490 83.264 239 27 1 9 234 51 289 1.37e-142 410
MsG0880043088.01.T01 MTR_2g010570 83.264 239 27 1 9 234 51 289 1.37e-142 410
MsG0880043088.01.T01 MTR_7g451880 82.427 239 29 1 9 234 52 290 3.96e-141 406
MsG0880043088.01.T01 MTR_4g058660 82.008 239 30 1 9 234 51 289 5.02e-140 404
MsG0880043088.01.T01 MTR_7g074180 82.008 239 30 1 9 234 51 289 2.31e-139 402
MsG0880043088.01.T01 MTR_1g023370 84.071 226 30 2 9 234 51 270 5.45e-135 390
MsG0880043088.01.T01 MTR_1g011490 80.085 236 25 2 9 231 51 277 2.76e-132 384
MsG0880043088.01.T01 MTR_5g045850 78.947 228 39 2 9 234 36 256 1.03e-125 366
MsG0880043088.01.T01 MTR_3g015660 89.529 191 20 0 9 199 51 241 5.36e-125 362
MsG0880043088.01.T01 MTR_1g082860 85.792 183 17 1 9 191 51 224 1.94e-111 329
MsG0880043088.01.T01 MTR_8g005940 69.874 239 26 2 9 234 51 256 2.66e-110 327
MsG0880043088.01.T01 MTR_1g105785 37.578 479 242 5 10 431 52 530 5.09e-110 335
MsG0880043088.01.T01 MTR_5g012180 69.027 226 36 2 9 234 36 227 4.76e-102 305
MsG0880043088.01.T01 MTR_7g110100 36.632 475 240 6 10 426 52 523 1.14e-100 310
MsG0880043088.01.T01 MTR_0105s0080 75.936 187 20 1 9 195 32 193 1.27e-94 285
MsG0880043088.01.T01 MTR_3g036220 59.414 239 23 3 9 234 36 213 6.09e-85 260
MsG0880043088.01.T01 MTR_3g452170 34.467 441 223 6 10 426 52 450 9.56e-81 256
MsG0880043088.01.T01 MTR_7g051400 32.969 458 254 7 10 423 52 500 1.27e-79 256
MsG0880043088.01.T01 MTR_5g071020 57.965 226 26 3 9 234 36 192 2.76e-74 232
MsG0880043088.01.T01 MTR_0048s0080 36.950 341 185 4 97 420 5 332 6.34e-67 217
MsG0880043088.01.T01 MTR_5g019960 52.128 188 88 2 11 197 59 245 8.11e-66 211
MsG0880043088.01.T01 MTR_7g045450 51.442 208 86 1 10 217 52 244 6.02e-65 209
MsG0880043088.01.T01 MTR_6g073570 51.442 208 86 1 10 217 52 244 6.02e-65 209
MsG0880043088.01.T01 MTR_3g449160 70.629 143 12 1 27 169 1 113 2.44e-64 202
MsG0880043088.01.T01 MTR_2g435900 71.329 143 11 1 27 169 1 113 4.00e-64 202
MsG0880043088.01.T01 MTR_2g019040 73.077 130 30 1 110 234 4 133 8.28e-58 190
MsG0880043088.01.T01 MTR_1g052715 39.662 237 129 2 9 231 10 246 1.03e-57 193
MsG0880043088.01.T01 MTR_1g110330 84.783 92 14 0 9 100 29 120 2.77e-51 172
MsG0880043088.01.T01 MTR_1g110330 69.841 63 13 2 172 234 117 173 2.41e-17 80.9
MsG0880043088.01.T01 MTR_1g492690 34.295 312 165 8 152 430 8 312 6.39e-47 165
MsG0880043088.01.T01 MTR_3g007260 48.148 162 58 2 11 172 38 173 1.64e-46 158
MsG0880043088.01.T01 MTR_4g060433 43.946 223 83 4 214 426 13 203 2.43e-44 154
MsG0880043088.01.T01 MTR_8g104590 41.860 215 83 4 219 426 7 186 9.52e-43 149
MsG0880043088.01.T01 MTR_4g032565 32.472 271 125 6 214 426 13 283 3.63e-37 137
MsG0880043088.01.T01 MTR_4g032585 32.472 271 125 6 214 426 13 283 4.89e-37 137
MsG0880043088.01.T01 MTR_6g024030 55.340 103 46 0 98 200 60 162 5.39e-34 127
MsG0880043088.01.T01 MTR_5g057125 29.605 304 172 8 162 429 1 298 6.86e-33 126
MsG0880043088.01.T01 MTR_4g036240 27.660 329 210 7 7 310 49 374 2.74e-31 126
MsG0880043088.01.T01 MTR_7g039300 58.763 97 40 0 10 106 83 179 1.06e-30 119
MsG0880043088.01.T01 MTR_6g465570 45.455 121 66 0 10 130 48 168 1.31e-30 116
MsG0880043088.01.T01 MTR_3g056270 28.097 331 202 8 9 310 210 533 1.75e-30 124
MsG0880043088.01.T01 MTR_3g056270 31.724 145 97 2 7 150 49 192 6.12e-16 80.5
MsG0880043088.01.T01 MTR_2g450060 25.073 343 222 9 7 317 49 388 1.25e-28 118
MsG0880043088.01.T01 MTR_1g115520 44.444 144 40 2 232 355 5 128 3.52e-28 108
MsG0880043088.01.T01 MTR_4g014890 26.269 335 213 8 12 315 79 410 4.36e-28 116
MsG0880043088.01.T01 MTR_3g055660 25.970 335 214 8 12 315 79 410 1.67e-27 115
MsG0880043088.01.T01 MTR_8g465040 44.167 120 67 0 10 129 52 171 1.84e-27 107
MsG0880043088.01.T01 MTR_1g051235 44.628 121 66 1 10 129 52 172 4.16e-27 107
MsG0880043088.01.T01 MTR_7g096440 30.247 162 113 0 11 172 6 167 1.96e-26 107
MsG0880043088.01.T01 MTR_7g070110 61.250 80 31 0 10 89 36 115 2.33e-26 103
MsG0880043088.01.T01 MTR_5g004860 24.316 329 212 8 22 317 60 384 7.44e-26 110
MsG0880043088.01.T01 MTR_8g062030 24.615 325 216 6 9 307 51 372 1.50e-25 109
MsG0880043088.01.T01 MTR_6g059860 25.625 320 198 8 21 306 82 395 9.16e-25 107
MsG0880043088.01.T01 MTR_2g048560 22.673 419 262 12 9 370 51 464 9.31e-25 107
MsG0880043088.01.T01 MTR_6g464080 25.731 342 218 9 5 315 44 380 2.63e-23 102
MsG0880043088.01.T01 MTR_6g055250 28.090 267 164 7 22 265 21 282 2.80e-23 101
MsG0880043088.01.T01 MTR_7g051840 36.975 119 72 1 11 129 10 125 3.25e-23 94.7
MsG0880043088.01.T01 MTR_2g008650 24.118 340 225 8 8 318 52 387 4.02e-23 102
MsG0880043088.01.T01 MTR_8g479260 24.118 340 225 8 8 318 52 387 6.93e-23 101
MsG0880043088.01.T01 MTR_5g053590 26.684 386 234 11 11 350 50 432 8.13e-23 101
MsG0880043088.01.T01 MTR_4g036240 26.102 295 190 7 41 310 3 294 3.92e-22 99.0
MsG0880043088.01.T01 MTR_1g043690 25.188 266 174 5 27 272 72 332 5.39e-21 95.9
MsG0880043088.01.T01 MTR_5g078250 21.466 382 249 8 9 342 51 429 9.42e-21 95.1
MsG0880043088.01.T01 MTR_4g085760 26.829 287 183 8 12 274 57 340 1.46e-19 91.3
MsG0880043088.01.T01 MTR_8g064300 29.231 195 90 3 272 426 122 308 1.99e-19 89.0
MsG0880043088.01.T01 MTR_5g041170 24.719 267 162 8 76 306 17 280 5.96e-19 89.0
MsG0880043088.01.T01 MTR_1g075850 23.274 391 251 9 6 364 42 415 8.35e-19 89.0
MsG0880043088.01.T01 MTR_4g070090 27.019 322 206 10 12 306 75 394 8.45e-19 89.0
MsG0880043088.01.T01 MTR_5g093790 28.251 223 111 4 245 426 168 382 1.05e-18 87.8
MsG0880043088.01.T01 MTR_5g027390 27.019 322 206 10 12 306 43 362 1.47e-18 88.2
MsG0880043088.01.T01 MTR_0003s0290 23.906 297 193 7 29 294 35 329 3.10e-18 87.0
MsG0880043088.01.T01 MTR_1g094230 23.552 259 165 7 9 249 51 294 7.03e-18 84.3
MsG0880043088.01.T01 MTR_8g463820 24.893 233 144 6 9 225 51 268 1.22e-17 83.2
MsG0880043088.01.T01 MTR_6g039240 23.715 253 160 7 9 243 51 288 1.27e-17 83.2
MsG0880043088.01.T01 MTR_2g048550 22.362 398 246 13 7 349 49 438 5.96e-17 83.2
MsG0880043088.01.T01 MTR_4g017450 41.667 84 49 0 10 93 51 134 1.38e-15 73.9
MsG0880043088.01.T01 MTR_3g056240 28.409 176 123 3 7 181 49 222 1.72e-15 77.4
MsG0880043088.01.T01 MTR_6g069460 80.000 40 8 0 7 46 83 122 2.04e-15 73.6
MsG0880043088.01.T01 MTR_6g052340 27.919 197 135 5 9 200 47 241 2.04e-15 79.0
MsG0880043088.01.T01 MTR_4g036240 26.201 229 142 6 106 310 6 231 3.87e-15 77.4
MsG0880043088.01.T01 MTR_2g054710 24.862 181 133 3 8 187 52 230 1.74e-14 73.9
MsG0880043088.01.T01 MTR_2g062200 23.669 169 126 3 7 174 6 172 4.94e-14 70.5
MsG0880043088.01.T01 MTR_8g088810 25.532 188 133 4 9 193 51 234 1.31e-13 71.6
MsG0880043088.01.T01 MTR_3g068135 44.706 85 25 2 201 272 39 114 1.60e-13 69.7
MsG0880043088.01.T01 MTR_3g103470 47.826 92 43 3 341 429 1 90 3.37e-13 65.5
MsG0880043088.01.T01 MTR_4g070160 24.859 177 130 3 20 194 1 176 1.34e-12 67.4
MsG0880043088.01.T01 MTR_6g045290 28.378 148 104 2 22 168 318 464 1.85e-12 69.3
MsG0880043088.01.T01 MTR_5g085220 31.356 118 78 2 9 123 51 168 1.07e-11 63.5
MsG0880043088.01.T01 MTR_7g089660 23.926 163 108 3 9 170 51 198 1.43e-11 64.7
MsG0880043088.01.T01 MTR_4g011200 75.758 33 8 0 230 262 49 81 1.53e-11 62.4
MsG0880043088.01.T01 MTR_1g036740 31.356 118 78 2 9 123 51 168 1.63e-11 63.2
MsG0880043088.01.T01 MTR_8g096680 31.356 118 78 2 9 123 51 168 1.63e-11 63.2
MsG0880043088.01.T01 MTR_4g471610 31.356 118 78 2 9 123 51 168 1.68e-11 63.2
MsG0880043088.01.T01 MTR_3g078440 31.356 118 78 2 9 123 51 168 1.68e-11 63.2
MsG0880043088.01.T01 MTR_8g036090 31.356 118 78 2 9 123 51 168 1.68e-11 63.2
MsG0880043088.01.T01 MTR_1g101230 79.487 39 7 1 9 46 53 91 3.55e-11 62.4
MsG0880043088.01.T01 MTR_3g084550 30.508 118 79 2 9 123 10 127 3.70e-11 60.8
MsG0880043088.01.T01 MTR_4g016120 29.752 121 82 2 6 123 39 159 4.37e-11 61.6
MsG0880043088.01.T01 MTR_1g072220 30.508 118 79 2 9 123 10 127 9.47e-11 59.7
MsG0880043088.01.T01 MTR_3g116750 30.508 118 79 2 9 123 51 168 9.90e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043088.01.T01 AT1G52950 24.189 339 219 8 9 312 50 385 4.19e-24 105
MsG0880043088.01.T01 AT2G05642 20.728 357 186 10 9 310 51 365 4.19e-16 80.9

Find 97 sgRNAs with CRISPR-Local

Find 301 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTGAACATTTGAATTATT+TGG 0.116208 8:+18869522 None:intergenic
CCACTTGCATTGCTCTCTTT+GGG 0.202399 8:-18871133 MsG0880043088.01.T01:CDS
ACCACTTGCATTGCTCTCTT+TGG 0.221388 8:-18871134 MsG0880043088.01.T01:CDS
GGAGTTGCTAATGCCTTTAA+TGG 0.246567 8:-18870912 MsG0880043088.01.T01:CDS
TGCAAGACACGCATGTATTT+AGG 0.278275 8:-18871033 MsG0880043088.01.T01:intron
GCACATTACGCCCAATAAAC+TGG 0.284869 8:+18869998 None:intergenic
CGCCAGGTGACCCAGTTTAT+TGG 0.287098 8:-18870009 MsG0880043088.01.T01:CDS
TTGTGTGAAGTTAACTTATA+AGG 0.292516 8:+18871602 None:intergenic
CATCAGCTTAGTCCCATTAA+AGG 0.298501 8:+18870899 None:intergenic
GGACCTCTTAGCACCTGTTT+TGG 0.300072 8:+18869354 None:intergenic
GGGACTAAGCTGATGCTTAA+TGG 0.313305 8:-18870891 MsG0880043088.01.T01:CDS
TAATTGAAAGAGGTGATATA+AGG 0.328150 8:-18871317 MsG0880043088.01.T01:CDS
TACGTAATTTCAGATGTTAT+TGG 0.335367 8:-18871345 MsG0880043088.01.T01:intron
CGCCACAACTAGAAAAGATT+TGG 0.338643 8:-18871702 MsG0880043088.01.T01:CDS
ACTATATGTGAGATCGAAAC+TGG 0.342217 8:-18870279 MsG0880043088.01.T01:CDS
GGTTATTGATCTCACTTTAG+AGG 0.347534 8:-18871265 MsG0880043088.01.T01:CDS
TCATTCTGTTCGTTGAAATC+AGG 0.350440 8:+18870454 None:intergenic
GTCATGTACGCAGCGACTTC+AGG 0.351625 8:+18870861 None:intergenic
AAGATTTGGTGGCAAGGTTC+AGG 0.355625 8:-18871688 MsG0880043088.01.T01:CDS
CAGCTTGGAAATGCAATTGT+AGG 0.358010 8:-18871638 MsG0880043088.01.T01:CDS
GCCAGGTGACCCAGTTTATT+GGG 0.358263 8:-18870008 MsG0880043088.01.T01:CDS
TGAAATCAGGCTGACACTTC+GGG 0.369720 8:+18870467 None:intergenic
ATGTGGAGAAGTGGGGTGTC+CGG 0.372402 8:-18873534 MsG0880043088.01.T01:CDS
TGTGGAGAAGTGGGGTGTCC+GGG 0.393647 8:-18873533 MsG0880043088.01.T01:CDS
CACAGAGTCAATGCTATTAG+AGG 0.396125 8:+18869333 None:intergenic
ATGCACCCAGTGTGCTTCAT+TGG 0.403027 8:-18870235 MsG0880043088.01.T01:CDS
GAAGAGAGAATTTCATTGAA+TGG 0.411269 8:+18871497 None:intergenic
GACACACCAACCACCAAAAC+AGG 0.418702 8:-18869367 MsG0880043088.01.T01:CDS
CACAATTTAATGTGGAGAAG+TGG 0.424969 8:-18873543 None:intergenic
GCAGGATGTACCAGAGGTTA+AGG 0.433269 8:-18869416 MsG0880043088.01.T01:intron
TTTGTGACCGACGTCTGGCC+AGG 0.435069 8:+18869292 None:intergenic
GAGTTGCTAATGCCTTTAAT+GGG 0.439194 8:-18870911 MsG0880043088.01.T01:CDS
GGTGGCAAGGTTCAGGTCCA+TGG 0.442231 8:-18871681 MsG0880043088.01.T01:CDS
TATGTTTAAGTATAATTTGA+AGG 0.442348 8:-18869697 MsG0880043088.01.T01:intron
CACTTGCATTGCTCTCTTTG+GGG 0.462664 8:-18871132 MsG0880043088.01.T01:CDS
TTCAGGTCCATGGTTGAAGA+AGG 0.473259 8:-18871671 MsG0880043088.01.T01:CDS
TTTACAGATCTGTCAAGCTT+CGG 0.483301 8:-18870310 MsG0880043088.01.T01:intron
TTGAAATCAGGCTGACACTT+CGG 0.486819 8:+18870466 None:intergenic
AATTGAAAGAGGTGATATAA+GGG 0.489125 8:-18871316 MsG0880043088.01.T01:CDS
AAAAGGATGGAAGGAAAAGC+AGG 0.493666 8:-18871287 MsG0880043088.01.T01:CDS
GAAGTCGCTGCGTACATGAC+AGG 0.494351 8:-18870858 MsG0880043088.01.T01:CDS
AAGTGTCGAGGAAGTGTCTA+CGG 0.499062 8:-18871474 MsG0880043088.01.T01:CDS
GCCCAATAAACTGGGTCACC+TGG 0.499906 8:+18870007 None:intergenic
AACTGAAATATCAATATAGT+AGG 0.504939 8:+18871057 None:intergenic
GATAGCAGGCGAGTGTACTT+TGG 0.506539 8:+18871544 None:intergenic
CACATTACGCCCAATAAACT+GGG 0.508234 8:+18869999 None:intergenic
TTCAAGGTTTAGGTTGGTGA+AGG 0.510181 8:-18869792 MsG0880043088.01.T01:intron
CTGCATGAGTCCTTAACCTC+TGG 0.517560 8:+18869406 None:intergenic
ACAATTTAATGTGGAGAAGT+GGG 0.520573 8:-18873542 None:intergenic
CTCTAATAGCATTGACTCTG+TGG 0.521605 8:-18869332 MsG0880043088.01.T01:CDS
AGATCGAAACTGGGGTTGAT+TGG 0.522728 8:-18870269 MsG0880043088.01.T01:CDS
GTTGTTGAGCTTAGTGTGGA+TGG 0.524110 8:-18869552 MsG0880043088.01.T01:CDS
TGATATAAGGGAAACTGAAA+AGG 0.524272 8:-18871304 MsG0880043088.01.T01:CDS
AGTTTCGATCTCACATATAG+TGG 0.527956 8:+18870281 None:intergenic
ATAAGGGAAACTGAAAAGGA+TGG 0.532230 8:-18871300 MsG0880043088.01.T01:CDS
ATTGGTCATGTAATTGAAAG+AGG 0.535259 8:-18871327 MsG0880043088.01.T01:CDS
AAAACGTTCATAGGGATAGC+AGG 0.542724 8:+18871530 None:intergenic
GAAATGTCGTAAAGAAGTAT+CGG 0.544878 8:-18869770 MsG0880043088.01.T01:CDS
CAGGTCCATGGTTGAAGAAG+GGG 0.549020 8:-18871669 MsG0880043088.01.T01:CDS
TTGACACGAACAACTCTGGT+AGG 0.549701 8:+18869268 None:intergenic
TCGGAATTATGCTGTAAAGA+AGG 0.551089 8:-18869751 MsG0880043088.01.T01:CDS
TCAGGTCCATGGTTGAAGAA+GGG 0.552024 8:-18871670 MsG0880043088.01.T01:CDS
CTTGATCAATGAACATAATG+AGG 0.553274 8:-18869971 MsG0880043088.01.T01:intron
GTGGAGAAGTGGGGTGTCCG+GGG 0.556658 8:-18873532 MsG0880043088.01.T01:intron
TCAACAACAGATCCATCGTC+GGG 0.557450 8:+18869567 None:intergenic
CTATATGTGAGATCGAAACT+GGG 0.565040 8:-18870278 MsG0880043088.01.T01:CDS
CGGTGGCCAATGAAGCACAC+TGG 0.566637 8:+18870229 None:intergenic
CACAACTAGAAAAGATTTGG+TGG 0.572585 8:-18871699 MsG0880043088.01.T01:CDS
CCACCAAAACAGGTGCTAAG+AGG 0.573345 8:-18869357 MsG0880043088.01.T01:CDS
AGTGTCGAGGAAGTGTCTAC+GGG 0.578501 8:-18871473 MsG0880043088.01.T01:intron
CTAGAAAAGATTTGGTGGCA+AGG 0.580401 8:-18871694 MsG0880043088.01.T01:CDS
GGGAAACTGAAAAGGATGGA+AGG 0.581802 8:-18871296 MsG0880043088.01.T01:CDS
CTCAACAACAGATCCATCGT+CGG 0.590122 8:+18869566 None:intergenic
GGTGGCCAATGAAGCACACT+GGG 0.590767 8:+18870230 None:intergenic
ATCTGTTGTTGAGCTTAGTG+TGG 0.594833 8:-18869556 MsG0880043088.01.T01:CDS
GCTGTTGATGATGATGAACC+TGG 0.596368 8:-18869310 MsG0880043088.01.T01:CDS
TAGTAGGTGTGTGGTTGTCA+TGG 0.596523 8:+18871073 None:intergenic
AAGCACTCCGTTGTCAGCGG+TGG 0.601082 8:+18870212 None:intergenic
AAGTCGCTGCGTACATGACA+GGG 0.606137 8:-18870857 MsG0880043088.01.T01:intron
GTCATCGTGATGGACGACAC+AGG 0.607107 8:-18870057 MsG0880043088.01.T01:CDS
TCATTGGCCACCGCTGACAA+CGG 0.610894 8:-18870219 MsG0880043088.01.T01:CDS
AATTCTCTCTTCAAGTGTCG+AGG 0.613690 8:-18871486 MsG0880043088.01.T01:CDS
TCGTGTCAAAATTGAGCACA+AGG 0.614456 8:-18869254 MsG0880043088.01.T01:CDS
CAAGCTGCATGTCATCGTGA+TGG 0.617455 8:-18870067 MsG0880043088.01.T01:CDS
CCCAAAGAGAGCAATGCAAG+TGG 0.621311 8:+18871133 None:intergenic
TCATCGTGATGGACGACACA+GGG 0.632753 8:-18870056 MsG0880043088.01.T01:CDS
CAATTTAATGTGGAGAAGTG+GGG 0.634045 8:-18873541 None:intergenic
ACGTGATAGAAACCCGACGA+TGG 0.636755 8:-18869579 MsG0880043088.01.T01:intron
AAGAAGGCATCTGATGATGT+TGG 0.653044 8:-18869735 MsG0880043088.01.T01:CDS
AGGTCCATGGTTGAAGAAGG+GGG 0.671399 8:-18871668 MsG0880043088.01.T01:CDS
TGATGAACCTGGCCAGACGT+CGG 0.674315 8:-18869299 MsG0880043088.01.T01:CDS
ACAAAGCACTCCGTTGTCAG+CGG 0.680943 8:+18870209 None:intergenic
ATGTCTGCAGGATGTACCAG+AGG 0.682555 8:-18869422 MsG0880043088.01.T01:intron
AAAGGATGGAAGGAAAAGCA+GGG 0.682942 8:-18871286 MsG0880043088.01.T01:CDS
TATATGTGAGATCGAAACTG+GGG 0.729438 8:-18870277 MsG0880043088.01.T01:CDS
ATATCAATATAGTAGGTGTG+TGG 0.746817 8:+18871064 None:intergenic
AAGCATGATTGAGTCAACTG+AGG 0.787148 8:-18870424 MsG0880043088.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAATTAAGGAAAATTT+AGG - Chr8:18869423-18869442 MsG0880043088.01.T01:intron 10.0%
!! ATAACATATAAAAATGTAAA+TGG + Chr8:18871943-18871962 None:intergenic 10.0%
!! ATTGTTCAATTATTATTAAT+AGG - Chr8:18872172-18872191 MsG0880043088.01.T01:intron 10.0%
!!! GTTTTTGTAAAAATAAAAAA+AGG - Chr8:18869470-18869489 MsG0880043088.01.T01:intron 10.0%
!!! TATTGAATTTTTGAAAAATT+AGG - Chr8:18871829-18871848 MsG0880043088.01.T01:intron 10.0%
!!! TTTTATATGTTATAGAATAA+AGG - Chr8:18871950-18871969 MsG0880043088.01.T01:intron 10.0%
!! ATATTACCAAAATATCAATT+CGG + Chr8:18871602-18871621 None:intergenic 15.0%
!! TAAATATGAAATAGTTGTTT+CGG + Chr8:18869852-18869871 None:intergenic 15.0%
!! TAAATATGAAATATGATCAA+TGG + Chr8:18870052-18870071 None:intergenic 15.0%
!! TATATAATTGTATAAATGTG+TGG - Chr8:18872834-18872853 MsG0880043088.01.T01:intron 15.0%
!! TATGATGTATTTATAGAAAA+AGG + Chr8:18870710-18870729 None:intergenic 15.0%
!! TATGTTTAAGTATAATTTGA+AGG - Chr8:18873074-18873093 MsG0880043088.01.T01:intron 15.0%
!! TTTAGTAAATAAGATAAACA+TGG + Chr8:18869689-18869708 None:intergenic 15.0%
!!! ACATTTTATTATTTTTTAGC+AGG - Chr8:18872897-18872916 MsG0880043088.01.T01:intron 15.0%
!!! CATTTTATTATTTTTTAGCA+GGG - Chr8:18872898-18872917 MsG0880043088.01.T01:intron 15.0%
!!! CATTTTTCATTCTAATAAAA+GGG + Chr8:18872269-18872288 None:intergenic 15.0%
!!! GAAATTTTTAGATGTATTTT+TGG - Chr8:18872386-18872405 MsG0880043088.01.T01:intron 15.0%
!!! TAAATATGAAATAGTTGTTT+TGG + Chr8:18869852-18869871 None:intergenic 15.0%
!!! TTAATTCTTTAATCCTTTTA+AGG + Chr8:18869404-18869423 None:intergenic 15.0%
!! AAAAATAAAAAAAGGGTTTG+AGG - Chr8:18869478-18869497 MsG0880043088.01.T01:intron 20.0%
!! AACTGAAATATCAATATAGT+AGG + Chr8:18871717-18871736 None:intergenic 20.0%
!! ACTATGTCAATATTAATTTC+AGG - Chr8:18870557-18870576 MsG0880043088.01.T01:intron 20.0%
!! ATCTGAACATTTGAATTATT+TGG + Chr8:18873252-18873271 None:intergenic 20.0%
!! ATTGTGTTTAATTCCTTAAA+AGG - Chr8:18869388-18869407 MsG0880043088.01.T01:CDS 20.0%
!! GATATAGTTGATTATTTGAT+AGG - Chr8:18872679-18872698 MsG0880043088.01.T01:intron 20.0%
!! TATTACCAAAATATCAATTC+GGG + Chr8:18871601-18871620 None:intergenic 20.0%
!! TGATAAATGCTAAAATTGAA+TGG + Chr8:18869803-18869822 None:intergenic 20.0%
!! TTATAGAATAATGCACATAA+AGG - Chr8:18873130-18873149 MsG0880043088.01.T01:intron 20.0%
!! TTTGAAAAATTAGGTGATAT+GGG - Chr8:18871838-18871857 MsG0880043088.01.T01:intron 20.0%
!!! CAATTTGATCAATTTTGTTA+CGG + Chr8:18873319-18873338 None:intergenic 20.0%
!!! GCATTTTTCATTCTAATAAA+AGG + Chr8:18872270-18872289 None:intergenic 20.0%
!!! GTTCAATATTTTTATGCAAA+AGG - Chr8:18872428-18872447 MsG0880043088.01.T01:intron 20.0%
!!! TTTTGAAAAATTAGGTGATA+TGG - Chr8:18871837-18871856 MsG0880043088.01.T01:intron 20.0%
! AACACATGACACAAATTATT+AGG + Chr8:18870332-18870351 None:intergenic 25.0%
! AATTGAAAGAGGTGATATAA+GGG - Chr8:18871455-18871474 MsG0880043088.01.T01:intron 25.0%
! ACACATGACACAAATTATTA+GGG + Chr8:18870331-18870350 None:intergenic 25.0%
! AGATAAACATGGTATATATC+CGG + Chr8:18869678-18869697 None:intergenic 25.0%
! ATCAAAAAGAACAAAAGTAG+TGG + Chr8:18872742-18872761 None:intergenic 25.0%
! ATCACGTATACATCAATAAA+GGG + Chr8:18873179-18873198 None:intergenic 25.0%
! CAAATGTATGAAATTCCTAA+AGG + Chr8:18871385-18871404 None:intergenic 25.0%
! CTCTCATATTTCTTCATTTA+TGG - Chr8:18869331-18869350 MsG0880043088.01.T01:CDS 25.0%
! GTAGAACATAACTGATATTA+CGG - Chr8:18873096-18873115 MsG0880043088.01.T01:intron 25.0%
! TAAAGATTGACACATTGATA+AGG + Chr8:18870359-18870378 None:intergenic 25.0%
! TAATTGAAAGAGGTGATATA+AGG - Chr8:18871454-18871473 MsG0880043088.01.T01:intron 25.0%
! TACGTAATTTCAGATGTTAT+TGG - Chr8:18871426-18871445 MsG0880043088.01.T01:intron 25.0%
! TATCACGTATACATCAATAA+AGG + Chr8:18873180-18873199 None:intergenic 25.0%
! TATGTTATAGAATAAAGGCA+AGG - Chr8:18871955-18871974 MsG0880043088.01.T01:intron 25.0%
! TTGTGTGAAGTTAACTTATA+AGG + Chr8:18871172-18871191 None:intergenic 25.0%
!! AATAGTTGTTTCGGAAAAAT+AGG + Chr8:18870227-18870246 None:intergenic 25.0%
!! ATAGTTGTTTCGGAAAAATA+GGG + Chr8:18870226-18870245 None:intergenic 25.0%
!! ATGTGTCAACAATAATTTTC+CGG - Chr8:18869656-18869675 MsG0880043088.01.T01:intron 25.0%
!! ATGTTAGTACAAATTTTCGT+CGG + Chr8:18872881-18872900 None:intergenic 25.0%
!! ATTGTTAGTGGATATCTTTA+GGG + Chr8:18872048-18872067 None:intergenic 25.0%
!! CAAAATAGTGGAACAAAATT+AGG + Chr8:18870623-18870642 None:intergenic 25.0%
!! GGATAAAATTTGTTTACCTT+GGG + Chr8:18872620-18872639 None:intergenic 25.0%
!! TATTGTTAGTGGATATCTTT+AGG + Chr8:18872049-18872068 None:intergenic 25.0%
!!! ATTTTTGTTTTTATCATGCG+TGG - Chr8:18872647-18872666 MsG0880043088.01.T01:intron 25.0%
AAAAATGGGGGGAAAATATT+AGG + Chr8:18869738-18869757 None:intergenic 30.0%
AAAATGGGGGGAAAATATTA+GGG + Chr8:18869737-18869756 None:intergenic 30.0%
AAATGTGTGGTCTATATATG+AGG - Chr8:18872847-18872866 MsG0880043088.01.T01:intron 30.0%
AATAAGCTACTCATAAACGA+TGG + Chr8:18872015-18872034 None:intergenic 30.0%
AATATCAATTCGGGAACATA+AGG + Chr8:18871592-18871611 None:intergenic 30.0%
AATATTTCATGAGTCCGTAA+AGG - Chr8:18873287-18873306 MsG0880043088.01.T01:intron 30.0%
ACATTGCATAATTTATGCAG+GGG + Chr8:18869277-18869296 None:intergenic 30.0%
ACTGATAAGCATGGAAAAAT+AGG + Chr8:18870395-18870414 None:intergenic 30.0%
AGTGGAACAAAATTAGGAAA+TGG + Chr8:18870617-18870636 None:intergenic 30.0%
ATAAGCTACTCATAAACGAT+GGG + Chr8:18872014-18872033 None:intergenic 30.0%
ATATCAATATAGTAGGTGTG+TGG + Chr8:18871710-18871729 None:intergenic 30.0%
ATCAACACATTAAAATCAGC+AGG + Chr8:18872943-18872962 None:intergenic 30.0%
ATTCCTAAAGGAATGCTTAT+AGG + Chr8:18871373-18871392 None:intergenic 30.0%
ATTGGTCATGTAATTGAAAG+AGG - Chr8:18871444-18871463 MsG0880043088.01.T01:intron 30.0%
CATCAGAAAACTATTGTTAG+TGG + Chr8:18872060-18872079 None:intergenic 30.0%
CCGAGAAAAATTGAAAACTT+CGG + Chr8:18869523-18869542 None:intergenic 30.0%
CTTGATCAATGAACATAATG+AGG - Chr8:18872800-18872819 MsG0880043088.01.T01:intron 30.0%
GAAGAGAGAATTTCATTGAA+TGG + Chr8:18871277-18871296 None:intergenic 30.0%
GACACAAATTATTAGGGTTA+GGG + Chr8:18870325-18870344 None:intergenic 30.0%
GACATTGCATAATTTATGCA+GGG + Chr8:18869278-18869297 None:intergenic 30.0%
GATCAATGGCTAAAATTGAA+TGG + Chr8:18870038-18870057 None:intergenic 30.0%
TAATCCTTGTCCTAAATTGT+TGG - Chr8:18870591-18870610 MsG0880043088.01.T01:intron 30.0%
TATTGTTGACACATTGCATA+AGG + Chr8:18869650-18869669 None:intergenic 30.0%
TCGTTTATGAGTAGCTTATT+TGG - Chr8:18872015-18872034 MsG0880043088.01.T01:intron 30.0%
TGAACTCAAAAACGTTCATA+GGG + Chr8:18871252-18871271 None:intergenic 30.0%
TGACACAAATTATTAGGGTT+AGG + Chr8:18870326-18870345 None:intergenic 30.0%
TGATATAAGGGAAACTGAAA+AGG - Chr8:18871467-18871486 MsG0880043088.01.T01:intron 30.0%
TTCATGAAAATGATGCTAGT+GGG + Chr8:18870907-18870926 None:intergenic 30.0%
TTGAACTCAAAAACGTTCAT+AGG + Chr8:18871253-18871272 None:intergenic 30.0%
TTGACATAGTGTGTTTACTA+AGG + Chr8:18870547-18870566 None:intergenic 30.0%
TTTCTTGGAAAGGAAAAAAC+CGG - Chr8:18870770-18870789 MsG0880043088.01.T01:intron 30.0%
! ATGTTCCCGAATTGATATTT+TGG - Chr8:18871593-18871612 MsG0880043088.01.T01:CDS 30.0%
! CACTAACAATAGTTTTCTGA+TGG - Chr8:18872058-18872077 MsG0880043088.01.T01:intron 30.0%
! CATTTTCATGAACATGTTAC+TGG - Chr8:18870915-18870934 MsG0880043088.01.T01:CDS 30.0%
! CCGAAGTTTTCAATTTTTCT+CGG - Chr8:18869520-18869539 MsG0880043088.01.T01:intron 30.0%
! CGGATAAAATTTGTTTACCT+TGG + Chr8:18872621-18872640 None:intergenic 30.0%
! GAAATGTCGTAAAGAAGTAT+CGG - Chr8:18873001-18873020 MsG0880043088.01.T01:intron 30.0%
! TAGAATAAAGGCAAGGTTTT+TGG - Chr8:18871962-18871981 MsG0880043088.01.T01:intron 30.0%
! TGACAAGCAAATTCTTTTCA+AGG - Chr8:18872963-18872982 MsG0880043088.01.T01:intron 30.0%
! TGTTACGGATTAAACCTTTA+CGG + Chr8:18873304-18873323 None:intergenic 30.0%
! TTGAAATGCTCGCAATTTTT+AGG + Chr8:18870498-18870517 None:intergenic 30.0%
!! ATTCTTTTCAAGGTTTAGGT+TGG - Chr8:18872973-18872992 MsG0880043088.01.T01:intron 30.0%
!! GCAAATTCTTTTCAAGGTTT+AGG - Chr8:18872969-18872988 MsG0880043088.01.T01:intron 30.0%
!! GCAATTGTAGGTTTTAATGA+AGG - Chr8:18871145-18871164 MsG0880043088.01.T01:intron 30.0%
!!! GACAAAATTGTGACCTTTTT+TGG - Chr8:18871672-18871691 MsG0880043088.01.T01:CDS 30.0%
!!! TTTTAAGTTTGTGCTTTCTG+CGG - Chr8:18871770-18871789 MsG0880043088.01.T01:intron 30.0%
AAGCATTCTCTTTCTTGGAA+AGG - Chr8:18870760-18870779 MsG0880043088.01.T01:intron 35.0%
AATGCTTGCTTAGATTGAGA+AGG + Chr8:18870747-18870766 None:intergenic 35.0%
ACTATATGTGAGATCGAAAC+TGG - Chr8:18872492-18872511 MsG0880043088.01.T01:intron 35.0%
AGAAAAGTGGAGGGAAAAAT+GGG + Chr8:18869987-18870006 None:intergenic 35.0%
AGTTTCGATCTCACATATAG+TGG + Chr8:18872493-18872512 None:intergenic 35.0%
ATAAGGGAAACTGAAAAGGA+TGG - Chr8:18871471-18871490 MsG0880043088.01.T01:intron 35.0%
CACAACTAGAAAAGATTTGG+TGG - Chr8:18871072-18871091 MsG0880043088.01.T01:CDS 35.0%
CCATTGGATCTTGCATATTT+AGG - Chr8:18870010-18870029 MsG0880043088.01.T01:CDS 35.0%
CCTAAATATGCAAGATCCAA+TGG + Chr8:18870013-18870032 None:intergenic 35.0%
CTACCTATAAGCATTCCTTT+AGG - Chr8:18871367-18871386 MsG0880043088.01.T01:intron 35.0%
CTATATGTGAGATCGAAACT+GGG - Chr8:18872493-18872512 MsG0880043088.01.T01:intron 35.0%
GACTTCTCTGCATAAAACAT+AGG + Chr8:18870444-18870463 None:intergenic 35.0%
GAGTTGCTAATGCCTTTAAT+GGG - Chr8:18871860-18871879 MsG0880043088.01.T01:intron 35.0%
GATCAATGAACATAATGAGG+TGG - Chr8:18872803-18872822 MsG0880043088.01.T01:intron 35.0%
GATTGACATACTGATAAGCA+TGG + Chr8:18870404-18870423 None:intergenic 35.0%
GGACATTGCATAATTTATGC+AGG + Chr8:18869279-18869298 None:intergenic 35.0%
GGTTATTGATCTCACTTTAG+AGG - Chr8:18871506-18871525 MsG0880043088.01.T01:CDS 35.0%
GTTCATGAAAATGATGCTAG+TGG + Chr8:18870908-18870927 None:intergenic 35.0%
TAACTGCCGAATTATGAAAC+CGG + Chr8:18869585-18869604 None:intergenic 35.0%
TAAGCAAGCATTCTCTTTCT+TGG - Chr8:18870755-18870774 MsG0880043088.01.T01:intron 35.0%
TAGGAAATGGCCAACAATTT+AGG + Chr8:18870604-18870623 None:intergenic 35.0%
TATATGTGAGATCGAAACTG+GGG - Chr8:18872494-18872513 MsG0880043088.01.T01:intron 35.0%
TCACGTTAAGCACAAAATAG+TGG + Chr8:18870635-18870654 None:intergenic 35.0%
TCATGAAAATGATGCTAGTG+GGG + Chr8:18870906-18870925 None:intergenic 35.0%
TCATTCTGTTCGTTGAAATC+AGG + Chr8:18872320-18872339 None:intergenic 35.0%
TCATTGGATCTTGCACATTT+AGG - Chr8:18869775-18869794 MsG0880043088.01.T01:CDS 35.0%
TCGGAATTATGCTGTAAAGA+AGG - Chr8:18873020-18873039 MsG0880043088.01.T01:intron 35.0%
TGAAATGTGGAGGGAAAAAT+GGG + Chr8:18869752-18869771 None:intergenic 35.0%
TGATGTTGTTGTCGTCAATA+GGG - Chr8:18871034-18871053 MsG0880043088.01.T01:CDS 35.0%
TTCTCTGCATAAAACATAGG+CGG + Chr8:18870441-18870460 None:intergenic 35.0%
TTGACTACCGAGAAAAACTT+CGG + Chr8:18869556-18869575 None:intergenic 35.0%
TTTACAGATCTGTCAAGCTT+CGG - Chr8:18872461-18872480 MsG0880043088.01.T01:intron 35.0%
! TTAACTGCCGAAGTTTTTCT+CGG - Chr8:18869546-18869565 MsG0880043088.01.T01:CDS 35.0%
! TTGGTCGTAATTAAGTTGTC+TGG - Chr8:18871981-18872000 MsG0880043088.01.T01:intron 35.0%
! TTTGTCTGTTTCTTTGTAGC+TGG - Chr8:18871542-18871561 MsG0880043088.01.T01:CDS 35.0%
! TTTTGTTCTTTTTGATCGCC+AGG - Chr8:18872746-18872765 MsG0880043088.01.T01:intron 35.0%
!! AATTTTGACACGAACAACTC+TGG + Chr8:18873510-18873529 None:intergenic 35.0%
!! TTGATTGATTCGAGAGAAGA+AGG - Chr8:18870879-18870898 MsG0880043088.01.T01:CDS 35.0%
!!! CACCAAATCTTTTCTAGTTG+TGG + Chr8:18871074-18871093 None:intergenic 35.0%
AAAACGTTCATAGGGATAGC+AGG + Chr8:18871244-18871263 None:intergenic 40.0%
AAAAGGATGGAAGGAAAAGC+AGG - Chr8:18871484-18871503 MsG0880043088.01.T01:CDS 40.0%
AAAAGGGTTTGAGGATTCCT+CGG - Chr8:18869487-18869506 MsG0880043088.01.T01:intron 40.0%
AAAAGTGGAGGGAAAAATGG+GGG + Chr8:18869985-18870004 None:intergenic 40.0%
AAAGGATGGAAGGAAAAGCA+GGG - Chr8:18871485-18871504 MsG0880043088.01.T01:CDS 40.0%
AAATGTGGAGGGAAAAATGG+GGG + Chr8:18869750-18869769 None:intergenic 40.0%
AAGCATGATTGAGTCAACTG+AGG - Chr8:18872347-18872366 MsG0880043088.01.T01:intron 40.0%
AAGGTGTAATACGTGTGAGT+AGG + Chr8:18870691-18870710 None:intergenic 40.0%
AGAAGATGTGCACACAGAAA+AGG - Chr8:18872114-18872133 MsG0880043088.01.T01:intron 40.0%
AGACTCAAGTAGCAAGGTAA+GGG + Chr8:18872221-18872240 None:intergenic 40.0%
AGCTGAGATTGGAGTGTATT+TGG + Chr8:18870809-18870828 None:intergenic 40.0%
AGGACGACAAAGATGTTTAG+AGG - Chr8:18873537-18873556 MsG0880043088.01.T01:CDS 40.0%
ATCTGTTGTTGAGCTTAGTG+TGG - Chr8:18873215-18873234 MsG0880043088.01.T01:intron 40.0%
ATTGAGAAGGTCTGGCTAAT+AGG + Chr8:18870734-18870753 None:intergenic 40.0%
CAACAACATCAGTAAACAGC+TGG + Chr8:18871025-18871044 None:intergenic 40.0%
CACAGAGTCAATGCTATTAG+AGG + Chr8:18873441-18873460 None:intergenic 40.0%
CACATTACGCCCAATAAACT+GGG + Chr8:18872775-18872794 None:intergenic 40.0%
CAGAAAAGTGGAGGGAAAAA+TGG + Chr8:18869988-18870007 None:intergenic 40.0%
CAGCTTGGAAATGCAATTGT+AGG - Chr8:18871133-18871152 MsG0880043088.01.T01:CDS 40.0%
CATCAGCTTAGTCCCATTAA+AGG + Chr8:18871875-18871894 None:intergenic 40.0%
CATGTTACTGGTCGATGAAA+AGG - Chr8:18870927-18870946 MsG0880043088.01.T01:intron 40.0%
CGCAAGTGTTAAACTTGCAA+GGG - Chr8:18872588-18872607 MsG0880043088.01.T01:intron 40.0%
CGCCACAACTAGAAAAGATT+TGG - Chr8:18871069-18871088 MsG0880043088.01.T01:CDS 40.0%
CGCTACTCTTCTATTGACAA+TGG - Chr8:18872241-18872260 MsG0880043088.01.T01:intron 40.0%
CTGAAATGTGGAGGGAAAAA+TGG + Chr8:18869753-18869772 None:intergenic 40.0%
CTGATGTTGTTGTCGTCAAT+AGG - Chr8:18871033-18871052 MsG0880043088.01.T01:intron 40.0%
GAAAAGTGGAGGGAAAAATG+GGG + Chr8:18869986-18870005 None:intergenic 40.0%
GAAATGTGGAGGGAAAAATG+GGG + Chr8:18869751-18869770 None:intergenic 40.0%
GAAGATGTGCACACAGAAAA+GGG - Chr8:18872115-18872134 MsG0880043088.01.T01:intron 40.0%
GGAGTTGCTAATGCCTTTAA+TGG - Chr8:18871859-18871878 MsG0880043088.01.T01:intron 40.0%
GGGGGAAAATATTAGGGTTA+GGG + Chr8:18869731-18869750 None:intergenic 40.0%
GTGTATTTGGCAGACATCAT+TGG + Chr8:18870796-18870815 None:intergenic 40.0%
GTTGTCATGGTTGCCAAAAA+AGG + Chr8:18871688-18871707 None:intergenic 40.0%
TACGTGTGAGTAGGATATGA+TGG + Chr8:18870682-18870701 None:intergenic 40.0%
TCGCAAGTGTTAAACTTGCA+AGG - Chr8:18872587-18872606 MsG0880043088.01.T01:intron 40.0%
TGCAAGACACGCATGTATTT+AGG - Chr8:18871738-18871757 MsG0880043088.01.T01:intron 40.0%
TTGAAATCAGGCTGACACTT+CGG + Chr8:18872308-18872327 None:intergenic 40.0%
TTGCTTAGATTGAGAAGGTC+TGG + Chr8:18870742-18870761 None:intergenic 40.0%
! AAAATACGTTTTTGCCCCCT+CGG + Chr8:18869612-18869631 None:intergenic 40.0%
! AATTCTCTCTTCAAGTGTCG+AGG - Chr8:18871285-18871304 MsG0880043088.01.T01:CDS 40.0%
! ATGGCCAACAATTTAGGACA+AGG + Chr8:18870598-18870617 None:intergenic 40.0%
! GTCGTAATTAAGTTGTCTGG+AGG - Chr8:18871984-18872003 MsG0880043088.01.T01:intron 40.0%
!! AAGAAGGCATCTGATGATGT+TGG - Chr8:18873036-18873055 MsG0880043088.01.T01:intron 40.0%
!! ATTAGGGTTAGGGTTAGCTT+GGG + Chr8:18869721-18869740 None:intergenic 40.0%
!! CAATGACTCTGAAATGTGGA+GGG + Chr8:18869761-18869780 None:intergenic 40.0%
!! CTAGAAAAGATTTGGTGGCA+AGG - Chr8:18871077-18871096 MsG0880043088.01.T01:CDS 40.0%
!! CTCTAATAGCATTGACTCTG+TGG - Chr8:18873439-18873458 MsG0880043088.01.T01:intron 40.0%
!! GATCCAATGACTCTGAAATG+TGG + Chr8:18869765-18869784 None:intergenic 40.0%
!! TATTAGGGTTAGGGTTAGCT+TGG + Chr8:18869722-18869741 None:intergenic 40.0%
!! TTCAAGGTTTAGGTTGGTGA+AGG - Chr8:18872979-18872998 MsG0880043088.01.T01:intron 40.0%
!!! ATTTTTTAGCAGGGAGCAGT+AGG - Chr8:18872907-18872926 MsG0880043088.01.T01:intron 40.0%
AAAGTGGAGGGAAAAATGGG+GGG + Chr8:18869984-18870003 None:intergenic 45.0%
AATGTGGAGGGAAAAATGGG+GGG + Chr8:18869749-18869768 None:intergenic 45.0%
AATTCGGCAGTTAAATGCCG+AGG - Chr8:18869592-18869611 MsG0880043088.01.T01:intron 45.0%
ACCACTTGCATTGCTCTCTT+TGG - Chr8:18871637-18871656 MsG0880043088.01.T01:CDS 45.0%
AGCTACTCATAAACGATGGG+AGG + Chr8:18872011-18872030 None:intergenic 45.0%
ATTCGGCAGTTAAATGCCGA+GGG - Chr8:18869593-18869612 MsG0880043088.01.T01:intron 45.0%
ATTTGGCAGACATCATTGGC+CGG + Chr8:18870792-18870811 None:intergenic 45.0%
CAATGGCTCAGAAAAGTGGA+GGG + Chr8:18869996-18870015 None:intergenic 45.0%
CACTTGCATTGCTCTCTTTG+GGG - Chr8:18871639-18871658 MsG0880043088.01.T01:CDS 45.0%
CATGATTGAGTCAACTGAGG+TGG - Chr8:18872350-18872369 MsG0880043088.01.T01:intron 45.0%
CCACTTGCATTGCTCTCTTT+GGG - Chr8:18871638-18871657 MsG0880043088.01.T01:CDS 45.0%
CCTCCACATTTCAGAGTCAT+TGG - Chr8:18869759-18869778 MsG0880043088.01.T01:CDS 45.0%
CTCAACAACAGATCCATCGT+CGG + Chr8:18873208-18873227 None:intergenic 45.0%
GAGACTCAAGTAGCAAGGTA+AGG + Chr8:18872222-18872241 None:intergenic 45.0%
GATCCAATGGCTCAGAAAAG+TGG + Chr8:18870000-18870019 None:intergenic 45.0%
GCACATTACGCCCAATAAAC+TGG + Chr8:18872776-18872795 None:intergenic 45.0%
GGGAAACTGAAAAGGATGGA+AGG - Chr8:18871475-18871494 MsG0880043088.01.T01:CDS 45.0%
GGGACTAAGCTGATGCTTAA+TGG - Chr8:18871880-18871899 MsG0880043088.01.T01:intron 45.0%
GGGGGGAAAATATTAGGGTT+AGG + Chr8:18869732-18869751 None:intergenic 45.0%
GTTGTTGAGCTTAGTGTGGA+TGG - Chr8:18873219-18873238 MsG0880043088.01.T01:intron 45.0%
TAGTAGGTGTGTGGTTGTCA+TGG + Chr8:18871701-18871720 None:intergenic 45.0%
TCAACAACAGATCCATCGTC+GGG + Chr8:18873207-18873226 None:intergenic 45.0%
TCAGGTCCATGGTTGAAGAA+GGG - Chr8:18871101-18871120 MsG0880043088.01.T01:CDS 45.0%
TGAAATCAGGCTGACACTTC+GGG + Chr8:18872307-18872326 None:intergenic 45.0%
TGACACATTGCATAAGGCTG+TGG + Chr8:18869644-18869663 None:intergenic 45.0%
TGCATAATTTATGCAGGGGC+CGG + Chr8:18869273-18869292 None:intergenic 45.0%
TGTTGTTGTCGTCAATAGGG+TGG - Chr8:18871037-18871056 MsG0880043088.01.T01:CDS 45.0%
TGTTTGTCACCAATGTCTGC+AGG - Chr8:18873337-18873356 MsG0880043088.01.T01:intron 45.0%
TTCAGGTCCATGGTTGAAGA+AGG - Chr8:18871100-18871119 MsG0880043088.01.T01:CDS 45.0%
TTGACACGAACAACTCTGGT+AGG + Chr8:18873506-18873525 None:intergenic 45.0%
! ACTCCAATCTCAGCTGTTTC+TGG - Chr8:18870814-18870833 MsG0880043088.01.T01:intron 45.0%
! AGATCGAAACTGGGGTTGAT+TGG - Chr8:18872502-18872521 MsG0880043088.01.T01:intron 45.0%
! CAACTCGCACACACATTTTG+AGG + Chr8:18870852-18870871 None:intergenic 45.0%
! CTGCAGCCGGTTTCATAATT+CGG - Chr8:18869576-18869595 MsG0880043088.01.T01:intron 45.0%
!! AAGATTTGGTGGCAAGGTTC+AGG - Chr8:18871083-18871102 MsG0880043088.01.T01:CDS 45.0%
!! AAGTGTCGAGGAAGTGTCTA+CGG - Chr8:18871297-18871316 MsG0880043088.01.T01:CDS 45.0%
!! CCAATGACTCTGAAATGTGG+AGG + Chr8:18869762-18869781 None:intergenic 45.0%
!! GCTGTTGATGATGATGAACC+TGG - Chr8:18873461-18873480 MsG0880043088.01.T01:intron 45.0%
!! TAGGGTTAGGGTTAGCTTCA+GGG + Chr8:18869719-18869738 None:intergenic 45.0%
!! TTAGGGTTAGGGTTAGCTTC+AGG + Chr8:18869720-18869739 None:intergenic 45.0%
!! TTAGGGTTAGGGTTAGCTTG+GGG + Chr8:18870314-18870333 None:intergenic 45.0%
!!! TTAGCACCTGTTTTGGTGGT+TGG + Chr8:18873413-18873432 None:intergenic 45.0%
!! ATAAAAACAAAAATTATATT+CGG + Chr8:18872641-18872660 None:intergenic 5.0%
!! TAAAGAATAAAAAAAATTAA+TGG - Chr8:18869448-18869467 MsG0880043088.01.T01:intron 5.0%
!! TAAAGAATTAAATTTAATTA+AGG - Chr8:18869413-18869432 MsG0880043088.01.T01:CDS 5.0%
!!! TTTTTGTAAAAATAAAAAAA+GGG - Chr8:18869471-18869490 MsG0880043088.01.T01:intron 5.0%
AAGTCGCTGCGTACATGACA+GGG - Chr8:18871914-18871933 MsG0880043088.01.T01:intron 50.0%
ACGTGATAGAAACCCGACGA+TGG - Chr8:18873192-18873211 MsG0880043088.01.T01:intron 50.0%
AGGTCCATGGTTGAAGAAGG+GGG - Chr8:18871103-18871122 MsG0880043088.01.T01:CDS 50.0%
ATGCACCCAGTGTGCTTCAT+TGG - Chr8:18872536-18872555 MsG0880043088.01.T01:intron 50.0%
ATGTCTGCAGGATGTACCAG+AGG - Chr8:18873349-18873368 MsG0880043088.01.T01:intron 50.0%
CAAGCTGCATGTCATCGTGA+TGG - Chr8:18872704-18872723 MsG0880043088.01.T01:intron 50.0%
CAGGTCCATGGTTGAAGAAG+GGG - Chr8:18871102-18871121 MsG0880043088.01.T01:CDS 50.0%
CATAATTTATGCAGGGGCCG+GGG + Chr8:18869271-18869290 None:intergenic 50.0%
CCAATGGCTCAGAAAAGTGG+AGG + Chr8:18869997-18870016 None:intergenic 50.0%
CCACCAAAACAGGTGCTAAG+AGG - Chr8:18873414-18873433 MsG0880043088.01.T01:intron 50.0%
CCCAAAGAGAGCAATGCAAG+TGG + Chr8:18871641-18871660 None:intergenic 50.0%
CCTCCAGAAACAGCTGAGAT+TGG + Chr8:18870820-18870839 None:intergenic 50.0%
CTGCATGAGTCCTTAACCTC+TGG + Chr8:18873368-18873387 None:intergenic 50.0%
CTGGTACATCCTGCAGACAT+TGG + Chr8:18873349-18873368 None:intergenic 50.0%
GACACACCAACCACCAAAAC+AGG - Chr8:18873404-18873423 MsG0880043088.01.T01:intron 50.0%
GATAGCAGGCGAGTGTACTT+TGG + Chr8:18871230-18871249 None:intergenic 50.0%
GCAGGATGTACCAGAGGTTA+AGG - Chr8:18873355-18873374 MsG0880043088.01.T01:intron 50.0%
GCATAATTTATGCAGGGGCC+GGG + Chr8:18869272-18869291 None:intergenic 50.0%
GCCAGGTGACCCAGTTTATT+GGG - Chr8:18872763-18872782 MsG0880043088.01.T01:intron 50.0%
GTAGCGAGACTCAAGTAGCA+AGG + Chr8:18872227-18872246 None:intergenic 50.0%
TACCAACTGAGCCAAGCTCA+CGG - Chr8:18869300-18869319 MsG0880043088.01.T01:CDS 50.0%
TGTACCCCCTTCTTCAACCA+TGG + Chr8:18871110-18871129 None:intergenic 50.0%
TTCGGCAGTTAAATGCCGAG+GGG - Chr8:18869594-18869613 MsG0880043088.01.T01:intron 50.0%
! ACAAAGCACTCCGTTGTCAG+CGG + Chr8:18872565-18872584 None:intergenic 50.0%
! GAAGGGGGTACATATCAGCT+TGG - Chr8:18871118-18871137 MsG0880043088.01.T01:CDS 50.0%
! GGACCTCTTAGCACCTGTTT+TGG + Chr8:18873420-18873439 None:intergenic 50.0%
! TGAGCTTGGCTCAGTTGGTA+GGG + Chr8:18869300-18869319 None:intergenic 50.0%
!! AGGGTTAGGGTTAGCTTCAG+GGG + Chr8:18869718-18869737 None:intergenic 50.0%
!! AGTGTCGAGGAAGTGTCTAC+GGG - Chr8:18871298-18871317 MsG0880043088.01.T01:CDS 50.0%
!! CCAATCTCAGCTGTTTCTGG+AGG - Chr8:18870817-18870836 MsG0880043088.01.T01:intron 50.0%
!! CCTCCACTTTTCTGAGCCAT+TGG - Chr8:18869994-18870013 MsG0880043088.01.T01:CDS 50.0%
!! CCTCTTAGCACCTGTTTTGG+TGG + Chr8:18873417-18873436 None:intergenic 50.0%
!! TAGGGTTAGGGTTAGCTTGG+GGG + Chr8:18870313-18870332 None:intergenic 50.0%
!! TAGGTTTTGTGACCGACGTC+TGG + Chr8:18873487-18873506 None:intergenic 50.0%
!! TCATCGTGATGGACGACACA+GGG - Chr8:18872715-18872734 MsG0880043088.01.T01:intron 50.0%
ACCAACTGAGCCAAGCTCAC+GGG - Chr8:18869301-18869320 MsG0880043088.01.T01:CDS 55.0%
ACTTCGGCAGTTAACTGCCG+AGG + Chr8:18869507-18869526 None:intergenic 55.0%
CGCCAGGTGACCCAGTTTAT+TGG - Chr8:18872762-18872781 MsG0880043088.01.T01:intron 55.0%
GAAGTCGCTGCGTACATGAC+AGG - Chr8:18871913-18871932 MsG0880043088.01.T01:intron 55.0%
GCCCAATAAACTGGGTCACC+TGG + Chr8:18872767-18872786 None:intergenic 55.0%
GGTGGCCAATGAAGCACACT+GGG + Chr8:18872544-18872563 None:intergenic 55.0%
GTCATGTACGCAGCGACTTC+AGG + Chr8:18871913-18871932 None:intergenic 55.0%
GTGAGCTTGGCTCAGTTGGT+AGG + Chr8:18869301-18869320 None:intergenic 55.0%
TCATTGGCCACCGCTGACAA+CGG - Chr8:18872552-18872571 MsG0880043088.01.T01:intron 55.0%
TCGGCAGTTAAATGCCGAGG+GGG - Chr8:18869595-18869614 MsG0880043088.01.T01:intron 55.0%
TCTCGGTAGTCAACTGCAGC+CGG - Chr8:18869563-18869582 MsG0880043088.01.T01:CDS 55.0%
TGATGAACCTGGCCAGACGT+CGG - Chr8:18873472-18873491 MsG0880043088.01.T01:intron 55.0%
! ATGTGGAGAAGTGGGGTGTC+CGG - Chr8:18869237-18869256 MsG0880043088.01.T01:CDS 55.0%
!! AGGGTTAGGGTTAGCTTGGG+GGG + Chr8:18870312-18870331 None:intergenic 55.0%
!! GTCATCGTGATGGACGACAC+AGG - Chr8:18872714-18872733 MsG0880043088.01.T01:intron 55.0%
AAGCACTCCGTTGTCAGCGG+TGG + Chr8:18872562-18872581 None:intergenic 60.0%
CCAACTGAGCCAAGCTCACG+GGG - Chr8:18869302-18869321 MsG0880043088.01.T01:CDS 60.0%
CGGTGGCCAATGAAGCACAC+TGG + Chr8:18872545-18872564 None:intergenic 60.0%
GAGATGAGTCCCCGTGAGCT+TGG + Chr8:18869314-18869333 None:intergenic 60.0%
GGTGGCAAGGTTCAGGTCCA+TGG - Chr8:18871090-18871109 MsG0880043088.01.T01:CDS 60.0%
TTTGTGACCGACGTCTGGCC+AGG + Chr8:18873482-18873501 None:intergenic 60.0%
! CTTGCAAGGGTGCAGTCCCA+AGG - Chr8:18872601-18872620 MsG0880043088.01.T01:intron 60.0%
! TGTGGAGAAGTGGGGTGTCC+GGG - Chr8:18869238-18869257 MsG0880043088.01.T01:CDS 60.0%
CCCCGTGAGCTTGGCTCAGT+TGG + Chr8:18869305-18869324 None:intergenic 65.0%
! GTGGAGAAGTGGGGTGTCCG+GGG - Chr8:18869239-18869258 MsG0880043088.01.T01:CDS 65.0%
GGTGTCCGGGGTTCGAACCC+CGG - Chr8:18869251-18869270 MsG0880043088.01.T01:CDS 70.0%
AGGGGCCGGGGTTCGAACCC+CGG + Chr8:18869259-18869278 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 18869237 18873556 18869237 ID=MsG0880043088.01;Name=MsG0880043088.01
Chr8 mRNA 18869237 18873556 18869237 ID=MsG0880043088.01.T01;Parent=MsG0880043088.01;Name=MsG0880043088.01.T01;_AED=0.28;_eAED=0.30;_QI=0|0|0|0.81|0.7|0.81|11|0|433
Chr8 exon 18873533 18873556 18873533 ID=MsG0880043088.01.T01:exon:4949;Parent=MsG0880043088.01.T01
Chr8 exon 18871474 18871738 18871474 ID=MsG0880043088.01.T01:exon:4948;Parent=MsG0880043088.01.T01
Chr8 exon 18871258 18871354 18871258 ID=MsG0880043088.01.T01:exon:4947;Parent=MsG0880043088.01.T01
Chr8 exon 18871034 18871161 18871034 ID=MsG0880043088.01.T01:exon:4946;Parent=MsG0880043088.01.T01
Chr8 exon 18870858 18870942 18870858 ID=MsG0880043088.01.T01:exon:4945;Parent=MsG0880043088.01.T01
Chr8 exon 18870425 18870515 18870425 ID=MsG0880043088.01.T01:exon:4944;Parent=MsG0880043088.01.T01
Chr8 exon 18870201 18870325 18870201 ID=MsG0880043088.01.T01:exon:4943;Parent=MsG0880043088.01.T01
Chr8 exon 18869972 18870092 18869972 ID=MsG0880043088.01.T01:exon:4942;Parent=MsG0880043088.01.T01
Chr8 exon 18869698 18869802 18869698 ID=MsG0880043088.01.T01:exon:4941;Parent=MsG0880043088.01.T01
Chr8 exon 18869530 18869592 18869530 ID=MsG0880043088.01.T01:exon:4940;Parent=MsG0880043088.01.T01
Chr8 exon 18869237 18869434 18869237 ID=MsG0880043088.01.T01:exon:4939;Parent=MsG0880043088.01.T01
Chr8 CDS 18873533 18873556 18873533 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18871474 18871738 18871474 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18871258 18871354 18871258 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18871034 18871161 18871034 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18870858 18870942 18870858 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18870425 18870515 18870425 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18870201 18870325 18870201 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18869972 18870092 18869972 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18869698 18869802 18869698 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18869530 18869592 18869530 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Chr8 CDS 18869237 18869434 18869237 ID=MsG0880043088.01.T01:cds;Parent=MsG0880043088.01.T01
Gene Sequence

>MsG0880043088.01.T01

ATGTGGAGAAGTGGGGTGTCCGGGGGTGGACGTATTCACGCCACAACTAGAAAAGATTTGGTGGCAAGGTTCAGGTCCATGGTTGAAGAAGGGGGTACATATCAGCTTGGAAATGCAATTGTAGGTTTTAATGAAGGTCCTTATAAGTTAACTTCACACAAACATAAGCTTAGTATGATGCACAATTCAAATTTTACCAAAGTACACTCGCCTGCTATCCCTATGAACGTTTTTGAGTTCAAGCCATTCAATGAAATTCTCTCTTCAAGTGTCGAGGAAGTGTCTACGGATGTTATTGGTCATGTAATTGAAAGAGGTGATATAAGGGAAACTGAAAAGGATGGAAGGAAAAGCAGGGTTATTGATCTCACTTTAGAGGATCTTGAAAACAACCACTTGCATTGCTCTCTTTGGGGTGAACATGCTGACAAAATTGTGACCTTTTTTGGCAACCATGACAACCACACACCTACTATATTGATATTTCAGTTCTGCAAGACACGCATGTATTTAGGTGATATGGGAGTTGCTAATGCCTTTAATGGGACTAAGCTGATGCTTAATGGCGATTTGCCTGAAGTCGCTGCGTACATGACAGGAATGAAAAATGCATCAATACAGTTAACCCGAAGTGTCAGCCTGATTTCAACGAACAGAATGACAATTGAAAGCATGATTGAGTCAACTGAGATCTGTCAAGCTTCGGTGCTTGCCACTATATGTGAGATCGAAACTGGGGTTGATTGGTACTTTCGATCATGCACCCAGTGTGCTTCATTGGCCACCGCTGACAACGGAGTGCTTTGTTGTCGCAAGTTCAAGCTGCATGTCATCGTGATGGACGACACAGGGTCCACTACTTTTGTTCTTTTTGATCGCCAGGTGACCCAGTTTATTGGGCGTAATGTGCAAGACTTGATCAATGAACATAATGAGGTTGGTGAAGGAAATGTCGTAAAGAAGTATCGGAATTATGCTGTAAAGAAGGCATCTGATGATGTTGGTGTCATTGAGCAGTTTATGTTTAAGTATAATTTGAAGAAACCCGACGATGGATCTGTTGTTGAGCTTAGTGTGGATGGTGCTACGCCAAATAATTCAAATGATGTACCAGAGGTTAAGGACTCATGCAGCAATACATGTGTGATTGACACACCAACCACCAAAACAGGTGCTAAGAGGTCCTCTAATAGCATTGACTCTGTGGCTGTTGATGATGATGAACCTGGCCAGACGTCGGTCACAAAACCTACCAGAGTTGTTCGTGTCAAAATTGAGCACAAGGACGACAAAGATGTTTAG
Protein sequence

>MsG0880043088.01.T01

MWRSGVSGGGRIHATTRKDLVARFRSMVEEGGTYQLGNAIVGFNEGPYKLTSHKHKLSMMHNSNFTKVHSPAIPMNVFEFKPFNEILSSSVEEVSTDVIGHVIERGDIRETEKDGRKSRVIDLTLEDLENNHLHCSLWGEHADKIVTFFGNHDNHTPTILIFQFCKTRMYLGDMGVANAFNGTKLMLNGDLPEVAAYMTGMKNASIQLTRSVSLISTNRMTIESMIESTEICQASVLATICEIETGVDWYFRSCTQCASLATADNGVLCCRKFKLHVIVMDDTGSTTFVLFDRQVTQFIGRNVQDLINEHNEVGEGNVVKKYRNYAVKKASDDVGVIEQFMFKYNLKKPDDGSVVELSVDGATPNNSNDVPEVKDSCSNTCVIDTPTTKTGAKRSSNSIDSVAVDDDEPGQTSVTKPTRVVRVKIEHKDDKDV*