AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043129.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043129.01.T01 MTR_8g028780 97.004 701 21 0 1 701 1 701 0.0 1392
MsG0880043129.01.T01 MTR_8g028780 92.760 732 22 1 1 701 1 732 0.0 1373
MsG0880043129.01.T01 MTR_8g028795 85.265 699 99 4 6 701 19 716 0.0 1103
MsG0880043129.01.T01 MTR_8g031070 79.630 702 59 8 1 701 1 619 0.0 1068
MsG0880043129.01.T01 MTR_1g100150 52.550 706 326 7 1 701 1 702 0.0 753
MsG0880043129.01.T01 MTR_1g100130 52.691 706 325 7 1 701 6 707 0.0 749
MsG0880043129.01.T01 MTR_1g100130 56.187 598 256 5 107 701 2 596 0.0 681
MsG0880043129.01.T01 MTR_2g028530 32.761 699 408 17 35 699 68 738 2.92e-113 358
MsG0880043129.01.T01 MTR_4g105080 32.812 704 427 16 7 686 8 689 1.27e-107 343
MsG0880043129.01.T01 MTR_4g105080 34.791 526 303 13 185 686 42 551 2.54e-93 301
MsG0880043129.01.T01 MTR_4g109530 30.000 210 106 7 263 445 473 668 1.08e-19 94.4
MsG0880043129.01.T01 MTR_4g109530 30.000 210 106 7 263 445 458 653 1.31e-19 94.4
MsG0880043129.01.T01 MTR_8g099030 29.808 208 114 6 268 446 559 763 2.06e-19 93.6
MsG0880043129.01.T01 MTR_8g028685 81.250 48 9 0 654 701 80 127 8.58e-19 83.2
MsG0880043129.01.T01 MTR_8g095520 27.273 220 121 7 268 454 520 733 6.45e-18 89.0
MsG0880043129.01.T01 MTR_3g098380 26.818 220 122 8 268 454 541 754 4.57e-17 86.3
MsG0880043129.01.T01 MTR_3g098350 26.512 215 117 6 268 446 534 743 4.63e-17 86.3
MsG0880043129.01.T01 MTR_2g043900 27.751 209 118 6 268 446 548 753 1.06e-16 85.1
MsG0880043129.01.T01 MTR_2g043900 27.751 209 118 6 268 446 548 753 1.11e-16 84.7
MsG0880043129.01.T01 MTR_2g043900 27.751 209 118 6 268 446 548 753 1.51e-16 84.3
MsG0880043129.01.T01 MTR_1g083290 25.561 223 128 7 259 446 500 719 2.79e-16 83.6
MsG0880043129.01.T01 MTR_7g113130 24.171 211 125 6 268 446 524 731 1.73e-15 80.9
MsG0880043129.01.T01 MTR_7g113130 24.171 211 125 6 268 446 524 731 2.48e-15 80.5
MsG0880043129.01.T01 MTR_3g098320 25.877 228 121 8 268 455 513 732 2.27e-14 77.4
MsG0880043129.01.T01 MTR_3g098320 25.877 228 121 8 268 455 522 741 2.38e-14 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043129.01.T01 AT1G01580 59.605 708 268 9 6 701 24 725 0.0 831
MsG0880043129.01.T01 AT1G01580 59.605 708 268 9 6 701 102 803 0.0 831
MsG0880043129.01.T01 AT1G01590 53.361 714 305 13 1 701 6 704 0.0 749
MsG0880043129.01.T01 AT1G23020 52.714 700 310 9 6 701 35 717 0.0 726
MsG0880043129.01.T01 AT1G23020 52.714 700 310 9 6 701 12 694 0.0 725
MsG0880043129.01.T01 AT1G23020 52.782 701 307 11 6 701 35 716 0.0 723
MsG0880043129.01.T01 AT1G23020 52.782 701 307 11 6 701 35 716 0.0 723
MsG0880043129.01.T01 AT1G23020 52.790 699 307 10 6 701 12 690 0.0 722
MsG0880043129.01.T01 AT1G23020 52.782 701 307 11 6 701 12 693 0.0 722
MsG0880043129.01.T01 AT1G23020 52.782 701 307 11 6 701 12 693 0.0 722
MsG0880043129.01.T01 AT5G23990 49.929 705 334 8 6 701 5 699 0.0 705
MsG0880043129.01.T01 AT5G23980 49.929 705 334 8 6 701 5 699 0.0 702
MsG0880043129.01.T01 AT5G23990 45.532 705 323 9 6 701 5 657 0.0 616
MsG0880043129.01.T01 AT5G23990 52.878 556 251 5 155 701 14 567 0.0 602
MsG0880043129.01.T01 AT5G50160 30.435 736 432 18 18 700 19 727 4.39e-108 344
MsG0880043129.01.T01 AT5G49730 31.868 728 442 19 8 699 27 736 2.41e-105 337
MsG0880043129.01.T01 AT5G49740 30.411 730 452 17 8 699 34 745 4.43e-104 334
MsG0880043129.01.T01 AT5G49740 30.246 691 436 15 8 670 34 706 1.57e-100 324
MsG0880043129.01.T01 AT5G49730 35.547 512 305 10 8 502 27 530 4.07e-98 313
MsG0880043129.01.T01 AT5G49740 34.302 516 308 11 8 502 34 539 1.00e-95 306
MsG0880043129.01.T01 AT5G50160 30.824 558 313 14 196 700 11 548 6.86e-85 278
MsG0880043129.01.T01 AT1G19230 29.762 252 141 6 261 481 536 782 9.95e-24 107
MsG0880043129.01.T01 AT1G19230 29.762 252 141 6 261 481 562 808 1.27e-23 107
MsG0880043129.01.T01 AT4G25090 29.187 209 120 6 268 451 484 689 1.90e-21 100
MsG0880043129.01.T01 AT4G25090 29.187 209 120 6 268 451 472 677 2.54e-21 99.8
MsG0880043129.01.T01 AT1G64060 30.342 234 128 8 268 472 565 792 1.70e-20 97.4
MsG0880043129.01.T01 AT5G47910 28.230 209 117 6 268 446 554 759 7.42e-19 92.0
MsG0880043129.01.T01 AT1G09090 29.148 223 121 8 258 446 465 684 1.20e-18 91.3
MsG0880043129.01.T01 AT5G51060 26.364 220 124 8 268 455 531 744 1.53e-17 87.8
MsG0880043129.01.T01 AT5G07390 27.358 212 118 6 268 446 490 698 1.14e-16 84.7
MsG0880043129.01.T01 AT5G07390 27.358 212 118 6 268 446 522 730 1.23e-16 84.7
MsG0880043129.01.T01 AT4G11230 29.268 205 104 7 303 489 597 778 1.50e-16 84.7
MsG0880043129.01.T01 AT3G45810 26.638 229 123 6 260 446 497 722 3.72e-12 70.5
MsG0880043129.01.T01 AT1G09090 29.032 155 93 5 258 398 465 616 3.22e-11 67.0

Find 153 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGTGGTGCTGTTGTTTC+TGG 0.048121 8:+19460358 MsG0880043129.01.T01:CDS
CAATATTCTCGGATCCTTTA+AGG 0.086839 8:+19464094 MsG0880043129.01.T01:CDS
GGACTTCTATTTGAAATAAA+AGG 0.154842 8:+19464474 MsG0880043129.01.T01:intron
GATTTGATCCTACCAATTTC+TGG 0.166442 8:+19463811 MsG0880043129.01.T01:CDS
CCCTAGTTTCTACCTCTTCT+TGG 0.174450 8:+19462874 MsG0880043129.01.T01:CDS
AGTGTGGGAGTTCTTGTTTC+AGG 0.196177 8:+19464501 MsG0880043129.01.T01:CDS
TGTTACTTCTAATAGTAAAT+TGG 0.207270 8:+19463248 MsG0880043129.01.T01:CDS
GTTGCATCAAGTATCATATT+TGG 0.222234 8:+19461881 MsG0880043129.01.T01:CDS
AAGGCTGATCCTACCTATTT+TGG 0.222309 8:+19460452 MsG0880043129.01.T01:CDS
CAAATACTTTCAATCTAAAA+TGG 0.223646 8:+19460411 MsG0880043129.01.T01:CDS
TGGGGATGAATTGGAGTATC+TGG 0.239412 8:-19463901 None:intergenic
TCATCTGTGCTACCAATATT+TGG 0.246300 8:+19461844 MsG0880043129.01.T01:CDS
CTATTAGAAGTAACAGTAAA+TGG 0.254634 8:-19463240 None:intergenic
ACTTCCTGCCTCATTTGTTT+TGG 0.255207 8:-19464525 None:intergenic
TGTTCTTGAATGAAGAAATT+AGG 0.262375 8:-19463768 None:intergenic
TCATTAAATGTGGAGGAAAT+TGG 0.269799 8:+19463292 MsG0880043129.01.T01:CDS
CAAAGTTGGAGTATCAAATT+TGG 0.274753 8:+19462688 MsG0880043129.01.T01:CDS
TTTCAAGTGTAGCTGTCTTA+TGG 0.275222 8:+19464160 MsG0880043129.01.T01:CDS
TATACCTTGTGCACCAAAAT+AGG 0.277983 8:-19460465 None:intergenic
GTTGCATCCATTTGCTCATC+TGG 0.279872 8:+19464546 MsG0880043129.01.T01:CDS
ATGTTTAGGAACGCCCTTAA+AGG 0.285074 8:-19464108 None:intergenic
AGATGTAGACCTTAGGTAAT+TGG 0.289379 8:-19463403 None:intergenic
ATCATCTTCCTAATTATAAT+CGG 0.294324 8:+19464024 MsG0880043129.01.T01:CDS
ATTTATTGCAGATGTTGATA+TGG 0.295928 8:+19462663 MsG0880043129.01.T01:intron
TTGGCTTAAGCCATAGAGTT+TGG 0.301650 8:-19463921 None:intergenic
TTGCAACCATTCCCAAAATT+AGG 0.301865 8:+19462750 MsG0880043129.01.T01:CDS
GGAGAGATATCTTTGCTTGC+TGG 0.309354 8:+19462713 MsG0880043129.01.T01:CDS
TCAATCTATAATAAGGTTAT+TGG 0.310440 8:+19460340 MsG0880043129.01.T01:CDS
AACCGTCCAATGCTTGTAAA+AGG 0.316685 8:+19460852 MsG0880043129.01.T01:CDS
ATGTCACATGTGCCAGAAAT+TGG 0.325741 8:-19463823 None:intergenic
TGTAGAACTCAACTTCTCTA+AGG 0.326624 8:+19462973 MsG0880043129.01.T01:CDS
TGTTCATTGCTCTTCTTGTT+TGG 0.326969 8:+19460919 MsG0880043129.01.T01:CDS
TGGCTTAAGCCATAGAGTTT+GGG 0.327218 8:-19463920 None:intergenic
TCCTAAGGTTCTTACAATCT+AGG 0.337184 8:+19462906 MsG0880043129.01.T01:CDS
TAATGACCCCGATTATAATT+AGG 0.337889 8:-19464032 None:intergenic
GTGAGGCTCAATCTATAATA+AGG 0.341776 8:+19460333 MsG0880043129.01.T01:CDS
ATCTAGGCGCGGTGTTCGTT+TGG 0.341838 8:+19462922 MsG0880043129.01.T01:CDS
AGTCTTGTTAATAGCTACTT+TGG 0.343222 8:+19460638 MsG0880043129.01.T01:CDS
CAAATTTGATACTCCAACTT+TGG 0.350831 8:-19462687 None:intergenic
ATATCTGTTGAAGGTCCTTA+TGG 0.351254 8:+19463369 MsG0880043129.01.T01:CDS
AGTTGTATAGTGTGGGAATA+TGG 0.354213 8:+19461764 MsG0880043129.01.T01:CDS
GCTTGCTGGTTTGTTCTTGT+GGG 0.356226 8:+19462727 MsG0880043129.01.T01:CDS
ATTGGTTCATCGGATGGATT+TGG 0.364051 8:-19463940 None:intergenic
CAATTCATCCCCAAACTCTA+TGG 0.364176 8:+19463911 MsG0880043129.01.T01:CDS
CTTTCAAATCCTTCGCCTAT+CGG 0.368684 8:+19463336 MsG0880043129.01.T01:CDS
TGCTTGCTGGTTTGTTCTTG+TGG 0.371299 8:+19462726 MsG0880043129.01.T01:CDS
TTGGTGGTGCTGTTGTTTCT+GGG 0.377746 8:+19460359 MsG0880043129.01.T01:CDS
GTCTTGTTAATAGCTACTTT+GGG 0.378957 8:+19460639 MsG0880043129.01.T01:CDS
AATATTCTCGGATCCTTTAA+GGG 0.379920 8:+19464095 MsG0880043129.01.T01:CDS
TTTAGATTGAAAGTATTTGT+AGG 0.383540 8:-19460407 None:intergenic
GGAATATGGTTAGGTCTTGT+TGG 0.389598 8:+19461778 MsG0880043129.01.T01:CDS
GAAGAAATTAGGACAATGTT+TGG 0.390489 8:-19463757 None:intergenic
GAAGCCACCAATGTGCATTA+TGG 0.392459 8:+19464312 MsG0880043129.01.T01:CDS
CACATATTACTAGCATGTTT+AGG 0.401415 8:-19464122 None:intergenic
CATAGAGTTTGGGGATGAAT+TGG 0.401457 8:-19463910 None:intergenic
CCAAACACTTGGCTTTGGCT+TGG 0.403131 8:+19463979 MsG0880043129.01.T01:CDS
TAGGTCCAAACACTTGGCTT+TGG 0.411996 8:+19463974 MsG0880043129.01.T01:CDS
TTTGCACAATCAGTCGTAAT+GGG 0.416566 8:+19460805 MsG0880043129.01.T01:intron
TCTTGTTGGGAACATATGTT+TGG 0.419914 8:+19461792 MsG0880043129.01.T01:CDS
TCATCTTCCTAATTATAATC+GGG 0.424758 8:+19464025 MsG0880043129.01.T01:CDS
GGACCTAACATAGCATGTAT+TGG 0.425959 8:-19463958 None:intergenic
GAACCAATACATGCTATGTT+AGG 0.426876 8:+19463955 MsG0880043129.01.T01:CDS
CCAAGCCAAAGCCAAGTGTT+TGG 0.427284 8:-19463979 None:intergenic
TTTATGAACATTACACTTGT+GGG 0.427345 8:-19463186 None:intergenic
TCAGAAGTGAGGCCAAATAT+TGG 0.428860 8:-19461856 None:intergenic
GAATTTGTTACATCATCCAT+TGG 0.432515 8:+19461941 MsG0880043129.01.T01:CDS
GCTTCAACAAGGGACTGATA+TGG 0.444092 8:-19464294 None:intergenic
ATCAAGTATCATATTTGGCT+TGG 0.445757 8:+19461886 MsG0880043129.01.T01:CDS
AGCGAAACAGATTCAGAACT+TGG 0.447743 8:+19464203 MsG0880043129.01.T01:CDS
GCGAAGGATTTGAAAGCAAC+TGG 0.456692 8:-19463329 None:intergenic
TAATATTCAACTCCAAATTG+AGG 0.460431 8:+19463849 MsG0880043129.01.T01:CDS
GCATTATAAATCGTTGAACT+TGG 0.460573 8:-19464249 None:intergenic
AACTAAACCAGATGAGCAAA+TGG 0.468218 8:-19464553 None:intergenic
AAGCATTGGACGGTTCCATA+TGG 0.468549 8:-19460844 None:intergenic
AAAGTAGCTATTAACAAGAC+TGG 0.468699 8:-19460636 None:intergenic
GAATATGGTTAGGTCTTGTT+GGG 0.469125 8:+19461779 MsG0880043129.01.T01:CDS
GCAAGAGAAGTTGTATAGTG+TGG 0.469438 8:+19461756 MsG0880043129.01.T01:CDS
GACTTCTATTTGAAATAAAA+GGG 0.470059 8:+19464475 MsG0880043129.01.T01:CDS
CGCCTTGGAATATCTGTTGA+AGG 0.470730 8:+19463360 MsG0880043129.01.T01:CDS
CTATGTTAGGTCCAAACACT+TGG 0.472681 8:+19463968 MsG0880043129.01.T01:CDS
CATAGCATGTATTGGTTCAT+CGG 0.476192 8:-19463950 None:intergenic
AGACTGGAAAAGTGTACATA+AGG 0.479175 8:-19460620 None:intergenic
CACATTGGTGGCTTCAACAA+GGG 0.482039 8:-19464304 None:intergenic
AATTTGTTACATCATCCATT+GGG 0.484395 8:+19461942 MsG0880043129.01.T01:CDS
GTGTGATGTATGCCTCAATT+TGG 0.484646 8:-19463861 None:intergenic
GCCTAGATTGTAAGAACCTT+AGG 0.488391 8:-19462907 None:intergenic
TATAGTGTGGGAATATGGTT+AGG 0.492943 8:+19461769 MsG0880043129.01.T01:CDS
TTGGTTGAAGCAGGTCCATA+AGG 0.493515 8:-19463384 None:intergenic
CATTGCAACTTTGATATGCT+TGG 0.494130 8:-19463213 None:intergenic
CTTAGGTAATTGGTTGAAGC+AGG 0.494748 8:-19463393 None:intergenic
CCTTCGCCTATCGGTCGCCT+TGG 0.496053 8:+19463345 MsG0880043129.01.T01:CDS
TAACACGAATGCAATATTCT+CGG 0.497622 8:+19464083 MsG0880043129.01.T01:CDS
ACCAAGAAGAGGTAGAAACT+AGG 0.499474 8:-19462875 None:intergenic
GTTGGAGTATCAAATTTGGC+TGG 0.503021 8:+19462692 MsG0880043129.01.T01:CDS
CCAAGAAGAGGTAGAAACTA+GGG 0.503705 8:-19462874 None:intergenic
TCTTGGTTGATCGTTTCCTA+AGG 0.507895 8:+19462891 MsG0880043129.01.T01:CDS
ATCTATAATAAGGTTATTGG+TGG 0.512827 8:+19460343 MsG0880043129.01.T01:CDS
AGAAACATGGGACAACCATA+TGG 0.513216 8:+19460829 MsG0880043129.01.T01:CDS
ATTTATGAACATTACACTTG+TGG 0.514646 8:-19463187 None:intergenic
GCATGTATTGGTTCATCGGA+TGG 0.517956 8:-19463946 None:intergenic
ATATTTGGCCTCACTTCTGA+AGG 0.519844 8:+19461859 MsG0880043129.01.T01:CDS
CAAGAGAAGTTGTATAGTGT+GGG 0.522227 8:+19461757 MsG0880043129.01.T01:CDS
CATTCGTGTTATGATCGATC+GGG 0.527325 8:-19464071 None:intergenic
AGGGAGCATAGTGAAGGAAA+AGG 0.527997 8:-19462855 None:intergenic
GATATTCCAAGGCGACCGAT+AGG 0.539195 8:-19463351 None:intergenic
TTGACCATAATGCACATTGG+TGG 0.539301 8:-19464316 None:intergenic
TGAAATAAAAGGGTCAAGTG+TGG 0.543179 8:+19464485 MsG0880043129.01.T01:CDS
GAAATAAAAGGGTCAAGTGT+GGG 0.545425 8:+19464486 MsG0880043129.01.T01:CDS
CTAAGTGTTGTCATTAAATG+TGG 0.546157 8:+19463282 MsG0880043129.01.T01:CDS
GGCTTAAGCCATAGAGTTTG+GGG 0.548872 8:-19463919 None:intergenic
ATGTTGATATGGACCAAAGT+TGG 0.550286 8:+19462674 MsG0880043129.01.T01:CDS
GCATTCGTGTTATGATCGAT+CGG 0.552112 8:-19464072 None:intergenic
ACAGATGATCCACGTGTCAC+CGG 0.553412 8:-19461829 None:intergenic
TTTCAGGACCAAAACAAATG+AGG 0.556179 8:+19464517 MsG0880043129.01.T01:CDS
AAACAGATTCAGAACTTGGA+AGG 0.559017 8:+19464207 MsG0880043129.01.T01:CDS
AGTCGTAATGGGAAGAAACA+TGG 0.559139 8:+19460816 MsG0880043129.01.T01:intron
AGGACCAAAACAAATGAGGC+AGG 0.565726 8:+19464521 MsG0880043129.01.T01:CDS
CTGCTTCAACCAATTACCTA+AGG 0.570182 8:+19463394 MsG0880043129.01.T01:CDS
TTGGCTTGGACACATGCTCA+TGG 0.581558 8:+19461900 MsG0880043129.01.T01:CDS
GTGATGGTGAGTGGAGGAAG+TGG 0.581992 8:+19463667 MsG0880043129.01.T01:CDS
CTCAACTTCTCTAAGGGACA+TGG 0.582348 8:+19462980 MsG0880043129.01.T01:CDS
CAAGCATATCAAAGTTGCAA+TGG 0.585060 8:+19463214 MsG0880043129.01.T01:CDS
ATGCTTGTAAAAGGACCACT+TGG 0.586115 8:+19460861 MsG0880043129.01.T01:CDS
GTAGAACTCAACTTCTCTAA+GGG 0.587760 8:+19462974 MsG0880043129.01.T01:CDS
TTTGATTAGTAGATGCCCAA+TGG 0.593677 8:-19461957 None:intergenic
AGATGATGAAGATTATGTAG+AGG 0.593678 8:-19462808 None:intergenic
AATTAGGAAGATGATGAATG+AGG 0.596393 8:-19464016 None:intergenic
GCACATTGGTGGCTTCAACA+AGG 0.598989 8:-19464305 None:intergenic
GACCTTCAACAGATATTCCA+AGG 0.601000 8:-19463362 None:intergenic
CCAAGGCGACCGATAGGCGA+AGG 0.603236 8:-19463345 None:intergenic
TTTACAACTTATTTGCACAT+CGG 0.603937 8:+19460945 MsG0880043129.01.T01:CDS
GACACACTTGTGATGGTGAG+TGG 0.610694 8:+19463658 MsG0880043129.01.T01:CDS
CCTTGTGCACCAAAATAGGT+AGG 0.611441 8:-19460461 None:intergenic
AGGTAGGATCAGCCTTGCCA+CGG 0.616622 8:-19460445 None:intergenic
AGTGTTGTCATTAAATGTGG+AGG 0.622671 8:+19463285 MsG0880043129.01.T01:CDS
CATCTTCCTAATTATAATCG+GGG 0.623767 8:+19464026 MsG0880043129.01.T01:CDS
GTTGAACTTGGTGAGACTGT+TGG 0.624890 8:-19464237 None:intergenic
GTTGCCTAAAATCCGTGGCA+AGG 0.630628 8:+19460433 MsG0880043129.01.T01:CDS
CACATGTGCCAGAAATTGGT+AGG 0.631801 8:-19463819 None:intergenic
AACAGATTCAGAACTTGGAA+GGG 0.636327 8:+19464208 MsG0880043129.01.T01:CDS
GGAAACGATCAACCAAGAAG+AGG 0.638587 8:-19462886 None:intergenic
CAACAAGGGACTGATATGGA+AGG 0.639217 8:-19464290 None:intergenic
GTCGTAATGGGAAGAAACAT+GGG 0.641838 8:+19460817 MsG0880043129.01.T01:intron
ATCTACTAATCAAATGTCAG+AGG 0.642524 8:+19461966 MsG0880043129.01.T01:CDS
GAAACTAGGGAGCATAGTGA+AGG 0.643522 8:-19462861 None:intergenic
AAATGGTTGCCTAAAATCCG+TGG 0.643527 8:+19460428 MsG0880043129.01.T01:CDS
TCTTTGACCATAATGCACAT+TGG 0.653833 8:-19464319 None:intergenic
GTGATAGAAACAATTCCAAG+TGG 0.660807 8:-19460876 None:intergenic
TGATGCAACCTTCAGAAGTG+AGG 0.667104 8:-19461867 None:intergenic
CAGGCATGACACACTTGTGA+TGG 0.673949 8:+19463651 MsG0880043129.01.T01:intron
TTGAGTTCTACACCTTCACA+AGG 0.680447 8:-19462962 None:intergenic
AGGTTCTTACAATCTAGGCG+CGG 0.708377 8:+19462911 MsG0880043129.01.T01:CDS
ACACTTGTGATGGTGAGTGG+AGG 0.758886 8:+19463661 MsG0880043129.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTCCTTATTAAAAAA+TGG + Chr8:19462566-19462585 MsG0880043129.01.T01:intron 10.0%
!!! AATACAATATTTTTAGTAAT+TGG - Chr8:19461513-19461532 None:intergenic 10.0%
!!! TCTGTTTTTATTTTTTATTA+AGG - Chr8:19461283-19461302 None:intergenic 10.0%
!! ACAATATAAAGACAAAAATA+AGG - Chr8:19462617-19462636 None:intergenic 15.0%
!! TCAAATAAATTAATTCGAAT+AGG - Chr8:19463039-19463058 None:intergenic 15.0%
!! TCTCTAATAATTGAAAAAAA+CGG - Chr8:19463700-19463719 None:intergenic 15.0%
!!! AAATAATCTTGTTTACAAAA+AGG + Chr8:19461110-19461129 MsG0880043129.01.T01:intron 15.0%
!!! ACATTTTCCATTTTTTAATA+AGG - Chr8:19462576-19462595 None:intergenic 15.0%
!! AAAAGTCAATATTCAATCTA+AGG - Chr8:19462331-19462350 None:intergenic 20.0%
!! AAGATTAATTATGAAGTTGA+CGG - Chr8:19461313-19461332 None:intergenic 20.0%
!! ACGTAAAAAGTTTAAACAAT+CGG + Chr8:19463463-19463482 MsG0880043129.01.T01:intron 20.0%
!! ATCATCTTCCTAATTATAAT+CGG + Chr8:19464024-19464043 MsG0880043129.01.T01:CDS 20.0%
!! CAAATACTTTCAATCTAAAA+TGG + Chr8:19460411-19460430 MsG0880043129.01.T01:CDS 20.0%
!! CAACTTCATAATTAATCTTA+TGG + Chr8:19461314-19461333 MsG0880043129.01.T01:intron 20.0%
!! TAAATATTGAATTGCATTTG+TGG + Chr8:19461427-19461446 MsG0880043129.01.T01:intron 20.0%
!! TAACTCTTAAATTAAATCAC+AGG - Chr8:19462041-19462060 None:intergenic 20.0%
!! TCAATCTATAATAAGGTTAT+TGG + Chr8:19460340-19460359 MsG0880043129.01.T01:CDS 20.0%
!! TCTTATCATACCTATTAATT+AGG + Chr8:19461146-19461165 MsG0880043129.01.T01:intron 20.0%
!! TGATTCAAAACCTAATTAAT+AGG - Chr8:19461159-19461178 None:intergenic 20.0%
!! TTAATCTTAATCTTACTCTT+GGG - Chr8:19462065-19462084 None:intergenic 20.0%
!! TTTAATCTTAATCTTACTCT+TGG - Chr8:19462066-19462085 None:intergenic 20.0%
!!! AAAGAATTTTCTCCTAATTT+TGG - Chr8:19462765-19462784 None:intergenic 20.0%
!!! AAGAATTTTCTCCTAATTTT+GGG - Chr8:19462764-19462783 None:intergenic 20.0%
!!! AAGGAATTTTTTATGTGAAT+TGG - Chr8:19462557-19462576 None:intergenic 20.0%
!!! AGGAATTTTTTATGTGAATT+GGG - Chr8:19462556-19462575 None:intergenic 20.0%
!!! CATAACTTTTCACAATATTT+TGG - Chr8:19461478-19461497 None:intergenic 20.0%
!!! CATATAATTGTTCTTATTTC+AGG + Chr8:19460588-19460607 MsG0880043129.01.T01:intron 20.0%
!!! GACTTCTATTTGAAATAAAA+GGG + Chr8:19464475-19464494 MsG0880043129.01.T01:CDS 20.0%
!!! TGTTACTTCTAATAGTAAAT+TGG + Chr8:19463248-19463267 MsG0880043129.01.T01:CDS 20.0%
!!! TTTAGATTGAAAGTATTTGT+AGG - Chr8:19460410-19460429 None:intergenic 20.0%
!!! TTTATATTGTATTTAGCTCA+CGG + Chr8:19462627-19462646 MsG0880043129.01.T01:intron 20.0%
! AAATAGGGATAACTAGATTA+AGG - Chr8:19460736-19460755 None:intergenic 25.0%
! AAATTAAATCACAGGTAAGT+AGG - Chr8:19462033-19462052 None:intergenic 25.0%
! AAGGTTAAACATCCTAATTA+CGG + Chr8:19461389-19461408 MsG0880043129.01.T01:intron 25.0%
! AATTAAATCACAGGTAAGTA+GGG - Chr8:19462032-19462051 None:intergenic 25.0%
! AATTAGAGTATAGCACAAAT+AGG - Chr8:19460752-19460771 None:intergenic 25.0%
! AGTCAAAGCAAAACTTTATA+TGG - Chr8:19462251-19462270 None:intergenic 25.0%
! ATCAATTATAATCAAGACCA+AGG + Chr8:19461999-19462018 MsG0880043129.01.T01:intron 25.0%
! ATCTATAATAAGGTTATTGG+TGG + Chr8:19460343-19460362 MsG0880043129.01.T01:CDS 25.0%
! ATTAGAGTATAGCACAAATA+GGG - Chr8:19460751-19460770 None:intergenic 25.0%
! ATTTATGAACATTACACTTG+TGG - Chr8:19463190-19463209 None:intergenic 25.0%
! ATTTATTGCAGATGTTGATA+TGG + Chr8:19462663-19462682 MsG0880043129.01.T01:intron 25.0%
! CTATAGGGTTTAATTCATAT+AGG - Chr8:19463544-19463563 None:intergenic 25.0%
! CTATTAGAAGTAACAGTAAA+TGG - Chr8:19463243-19463262 None:intergenic 25.0%
! GAGCTTAAAGAAATTACTTA+TGG + Chr8:19463087-19463106 MsG0880043129.01.T01:intron 25.0%
! GTTCAATTCATAGAGATAAA+TGG - Chr8:19464434-19464453 None:intergenic 25.0%
! TAAAACAGTCTCAAAAATAG+CGG + Chr8:19460971-19460990 MsG0880043129.01.T01:CDS 25.0%
! TAAACCTTAAAAATACCATG+TGG + Chr8:19461351-19461370 MsG0880043129.01.T01:intron 25.0%
! TAATATTCAACTCCAAATTG+AGG + Chr8:19463849-19463868 MsG0880043129.01.T01:CDS 25.0%
! TACATCTTATCTATATCGAA+GGG + Chr8:19463419-19463438 MsG0880043129.01.T01:intron 25.0%
! TAGGATGTTTAACCTTTAAT+AGG - Chr8:19461385-19461404 None:intergenic 25.0%
! TATTAACACTCAATGAACAA+TGG + Chr8:19462443-19462462 MsG0880043129.01.T01:intron 25.0%
! TCATCTTCCTAATTATAATC+GGG + Chr8:19464025-19464044 MsG0880043129.01.T01:CDS 25.0%
! TGTTCTTGAATGAAGAAATT+AGG - Chr8:19463771-19463790 None:intergenic 25.0%
! TTATCTTAAAGTAAACTCGT+AGG + Chr8:19463012-19463031 MsG0880043129.01.T01:intron 25.0%
! TTTACAACTTATTTGCACAT+CGG + Chr8:19460945-19460964 MsG0880043129.01.T01:CDS 25.0%
! TTTATGAACATTACACTTGT+GGG - Chr8:19463189-19463208 None:intergenic 25.0%
!! GGACTTCTATTTGAAATAAA+AGG + Chr8:19464474-19464493 MsG0880043129.01.T01:intron 25.0%
!! TACATTTTCTTAGCAACAAA+AGG - Chr8:19462115-19462134 None:intergenic 25.0%
!! TTATATTGTATTTAGCTCAC+GGG + Chr8:19462628-19462647 MsG0880043129.01.T01:intron 25.0%
!! TTGAATCAATCAGTTTTACT+TGG + Chr8:19464589-19464608 MsG0880043129.01.T01:CDS 25.0%
!!! AATGTGATATGTTTTTTGCA+GGG + Chr8:19463151-19463170 MsG0880043129.01.T01:intron 25.0%
!!! AATTATTTCTGCAAAGCAAA+AGG - Chr8:19463591-19463610 None:intergenic 25.0%
!!! AATTTGTTACATCATCCATT+GGG + Chr8:19461942-19461961 MsG0880043129.01.T01:CDS 25.0%
!!! ACATGGTATTTTTAAGGTTT+AGG - Chr8:19461352-19461371 None:intergenic 25.0%
!!! ATTCGAGTTGTCTATATAAA+AGG + Chr8:19461249-19461268 MsG0880043129.01.T01:intron 25.0%
!!! ATTTTTAAGGTTTAGGTCTT+TGG - Chr8:19461345-19461364 None:intergenic 25.0%
!!! CTCACTCTTTTTTTTTTAAC+AGG + Chr8:19464453-19464472 MsG0880043129.01.T01:intron 25.0%
!!! TAATGTGATATGTTTTTTGC+AGG + Chr8:19463150-19463169 MsG0880043129.01.T01:intron 25.0%
!!! TTCTGGGTTTTATTATGATT+TGG + Chr8:19460375-19460394 MsG0880043129.01.T01:CDS 25.0%
!!! TTTTTAAGGTTTAGGTCTTT+GGG - Chr8:19461344-19461363 None:intergenic 25.0%
AAAGTAGCTATTAACAAGAC+TGG - Chr8:19460639-19460658 None:intergenic 30.0%
AATATTCTCGGATCCTTTAA+GGG + Chr8:19464095-19464114 MsG0880043129.01.T01:CDS 30.0%
AATTAGGAAGATGATGAATG+AGG - Chr8:19464019-19464038 None:intergenic 30.0%
AGATCACTCACTAATTAAAG+AGG - Chr8:19462412-19462431 None:intergenic 30.0%
AGATGATGAAGATTATGTAG+AGG - Chr8:19462811-19462830 None:intergenic 30.0%
ATAGATAAGATGTAGACCTT+AGG - Chr8:19463413-19463432 None:intergenic 30.0%
ATCAAGTATCATATTTGGCT+TGG + Chr8:19461886-19461905 MsG0880043129.01.T01:CDS 30.0%
ATCTACTAATCAAATGTCAG+AGG + Chr8:19461966-19461985 MsG0880043129.01.T01:CDS 30.0%
CAAATTTGATACTCCAACTT+TGG - Chr8:19462690-19462709 None:intergenic 30.0%
CACATATTACTAGCATGTTT+AGG - Chr8:19464125-19464144 None:intergenic 30.0%
CATCTTCCTAATTATAATCG+GGG + Chr8:19464026-19464045 MsG0880043129.01.T01:CDS 30.0%
CTACATCTTATCTATATCGA+AGG + Chr8:19463418-19463437 MsG0880043129.01.T01:intron 30.0%
CTGATAAAAAAACACACGAT+TGG - Chr8:19463505-19463524 None:intergenic 30.0%
GAAGAAATTAGGACAATGTT+TGG - Chr8:19463760-19463779 None:intergenic 30.0%
GATTGAACACTCGAATAAAT+CGG + Chr8:19462301-19462320 MsG0880043129.01.T01:intron 30.0%
GCATTATAAATCGTTGAACT+TGG - Chr8:19464252-19464271 None:intergenic 30.0%
GTTGCATCAAGTATCATATT+TGG + Chr8:19461881-19461900 MsG0880043129.01.T01:CDS 30.0%
TAAACATCCTAATTACGGTT+GGG + Chr8:19461394-19461413 MsG0880043129.01.T01:intron 30.0%
TAACACGAATGCAATATTCT+CGG + Chr8:19464083-19464102 MsG0880043129.01.T01:CDS 30.0%
TAATGACCCCGATTATAATT+AGG - Chr8:19464035-19464054 None:intergenic 30.0%
TCATTAAATGTGGAGGAAAT+TGG + Chr8:19463292-19463311 MsG0880043129.01.T01:CDS 30.0%
TGTGCTGTAATGTTATATTG+TGG + Chr8:19461716-19461735 MsG0880043129.01.T01:intron 30.0%
TGTTCATTGAGTGTTAATAG+AGG - Chr8:19462442-19462461 None:intergenic 30.0%
TTAAAAATACCATGTGGTTG+TGG + Chr8:19461357-19461376 MsG0880043129.01.T01:intron 30.0%
TTAAACATCCTAATTACGGT+TGG + Chr8:19461393-19461412 MsG0880043129.01.T01:intron 30.0%
TTACAGATCACTTACTAAAG+AGG - Chr8:19462474-19462493 None:intergenic 30.0%
! AAAGTTTAAACAATCGGCTT+CGG + Chr8:19463469-19463488 MsG0880043129.01.T01:intron 30.0%
! CAAAGTTGGAGTATCAAATT+TGG + Chr8:19462688-19462707 MsG0880043129.01.T01:CDS 30.0%
! CTAAGTGTTGTCATTAAATG+TGG + Chr8:19463282-19463301 MsG0880043129.01.T01:CDS 30.0%
! GTCTTGTTAATAGCTACTTT+GGG + Chr8:19460639-19460658 MsG0880043129.01.T01:CDS 30.0%
! TATATTGTATTTAGCTCACG+GGG + Chr8:19462629-19462648 MsG0880043129.01.T01:intron 30.0%
! TTTTATGTGAATTGGGCTTT+AGG - Chr8:19462549-19462568 None:intergenic 30.0%
!! ACAACCACATGGTATTTTTA+AGG - Chr8:19461358-19461377 None:intergenic 30.0%
!! AGTCTTGTTAATAGCTACTT+TGG + Chr8:19460638-19460657 MsG0880043129.01.T01:CDS 30.0%
!! CAAACTAGTGTTTTGCTATA+GGG - Chr8:19463559-19463578 None:intergenic 30.0%
!! CTTTTGTTTGTTCTTCTATC+AGG + Chr8:19463632-19463651 MsG0880043129.01.T01:intron 30.0%
!! GAATTTGTTACATCATCCAT+TGG + Chr8:19461941-19461960 MsG0880043129.01.T01:CDS 30.0%
!! TCAAACTAGTGTTTTGCTAT+AGG - Chr8:19463560-19463579 None:intergenic 30.0%
!! TTTTCTCCTAATTTTGGGAA+TGG - Chr8:19462759-19462778 None:intergenic 30.0%
!!! CAATCGTGTGTTTTTTTATC+AGG + Chr8:19463503-19463522 MsG0880043129.01.T01:intron 30.0%
!!! GATGACTTACTTTTAAGATC+AGG - Chr8:19464345-19464364 None:intergenic 30.0%
!!! GCTCTCATTTGATGATTTTT+TGG - Chr8:19460685-19460704 None:intergenic 30.0%
!!! TTTGGCATTCTTGTTTTTTC+CGG + Chr8:19461810-19461829 MsG0880043129.01.T01:CDS 30.0%
AAAAACCTTCATACCCCATA+AGG + Chr8:19462353-19462372 MsG0880043129.01.T01:intron 35.0%
AAACAGATTCAGAACTTGGA+AGG + Chr8:19464207-19464226 MsG0880043129.01.T01:CDS 35.0%
AACAGATTCAGAACTTGGAA+GGG + Chr8:19464208-19464227 MsG0880043129.01.T01:CDS 35.0%
AACTAAACCAGATGAGCAAA+TGG - Chr8:19464556-19464575 None:intergenic 35.0%
AATTAAAGAGGTCATTCTGC+TGG - Chr8:19462400-19462419 None:intergenic 35.0%
AGATGTAGACCTTAGGTAAT+TGG - Chr8:19463406-19463425 None:intergenic 35.0%
AGTGTTGTCATTAAATGTGG+AGG + Chr8:19463285-19463304 MsG0880043129.01.T01:CDS 35.0%
AGTTGTATAGTGTGGGAATA+TGG + Chr8:19461764-19461783 MsG0880043129.01.T01:CDS 35.0%
ATATCTGTTGAAGGTCCTTA+TGG + Chr8:19463369-19463388 MsG0880043129.01.T01:CDS 35.0%
ATGAACGCAAGCATACAAAA+AGG - Chr8:19460526-19460545 None:intergenic 35.0%
ATGTTGATATGGACCAAAGT+TGG + Chr8:19462674-19462693 MsG0880043129.01.T01:CDS 35.0%
CAAGAGAAGTTGTATAGTGT+GGG + Chr8:19461757-19461776 MsG0880043129.01.T01:CDS 35.0%
CAAGCATATCAAAGTTGCAA+TGG + Chr8:19463214-19463233 MsG0880043129.01.T01:CDS 35.0%
CAATATTCTCGGATCCTTTA+AGG + Chr8:19464094-19464113 MsG0880043129.01.T01:CDS 35.0%
CATTGCAACTTTGATATGCT+TGG - Chr8:19463216-19463235 None:intergenic 35.0%
GAAATAAAAGGGTCAAGTGT+GGG + Chr8:19464486-19464505 MsG0880043129.01.T01:CDS 35.0%
GAACCAATACATGCTATGTT+AGG + Chr8:19463955-19463974 MsG0880043129.01.T01:CDS 35.0%
GATTTGATCCTACCAATTTC+TGG + Chr8:19463811-19463830 MsG0880043129.01.T01:CDS 35.0%
GTAGAACTCAACTTCTCTAA+GGG + Chr8:19462974-19462993 MsG0880043129.01.T01:CDS 35.0%
GTGAGGCTCAATCTATAATA+AGG + Chr8:19460333-19460352 MsG0880043129.01.T01:CDS 35.0%
GTGATAGAAACAATTCCAAG+TGG - Chr8:19460879-19460898 None:intergenic 35.0%
TATACCTTGTGCACCAAAAT+AGG - Chr8:19460468-19460487 None:intergenic 35.0%
TATAGTGTGGGAATATGGTT+AGG + Chr8:19461769-19461788 MsG0880043129.01.T01:CDS 35.0%
TCATCTGTGCTACCAATATT+TGG + Chr8:19461844-19461863 MsG0880043129.01.T01:CDS 35.0%
TCCTAAGGTTCTTACAATCT+AGG + Chr8:19462906-19462925 MsG0880043129.01.T01:CDS 35.0%
TCTTGTTGGGAACATATGTT+TGG + Chr8:19461792-19461811 MsG0880043129.01.T01:CDS 35.0%
TCTTTGACCATAATGCACAT+TGG - Chr8:19464322-19464341 None:intergenic 35.0%
TGAAATAAAAGGGTCAAGTG+TGG + Chr8:19464485-19464504 MsG0880043129.01.T01:CDS 35.0%
TGTAGAACTCAACTTCTCTA+AGG + Chr8:19462973-19462992 MsG0880043129.01.T01:CDS 35.0%
TGTTCATTGCTCTTCTTGTT+TGG + Chr8:19460919-19460938 MsG0880043129.01.T01:CDS 35.0%
TTGCAACCATTCCCAAAATT+AGG + Chr8:19462750-19462769 MsG0880043129.01.T01:CDS 35.0%
TTTCAGGACCAAAACAAATG+AGG + Chr8:19464517-19464536 MsG0880043129.01.T01:CDS 35.0%
TTTGATTAGTAGATGCCCAA+TGG - Chr8:19461960-19461979 None:intergenic 35.0%
TTTGCACAATCAGTCGTAAT+GGG + Chr8:19460805-19460824 MsG0880043129.01.T01:intron 35.0%
! AAGTTGAACTGACTTCCTTA+TGG - Chr8:19462371-19462390 None:intergenic 35.0%
! AGACTGGAAAAGTGTACATA+AGG - Chr8:19460623-19460642 None:intergenic 35.0%
! AGTTGAACTGACTTCCTTAT+GGG - Chr8:19462370-19462389 None:intergenic 35.0%
! ATGGCAATTTTCACAACTCA+TGG + Chr8:19461919-19461938 MsG0880043129.01.T01:CDS 35.0%
! TTTCAAGTGTAGCTGTCTTA+TGG + Chr8:19464160-19464179 MsG0880043129.01.T01:CDS 35.0%
! TTTTGCACAATCAGTCGTAA+TGG + Chr8:19460804-19460823 MsG0880043129.01.T01:intron 35.0%
!! ATGACAACACTTAGCTTTTC+TGG - Chr8:19463276-19463295 None:intergenic 35.0%
!! CATAGCATGTATTGGTTCAT+CGG - Chr8:19463953-19463972 None:intergenic 35.0%
!! GAATATGGTTAGGTCTTGTT+GGG + Chr8:19461779-19461798 MsG0880043129.01.T01:CDS 35.0%
AAATGGTTGCCTAAAATCCG+TGG + Chr8:19460428-19460447 MsG0880043129.01.T01:CDS 40.0%
AACCGTCCAATGCTTGTAAA+AGG + Chr8:19460852-19460871 MsG0880043129.01.T01:CDS 40.0%
AAGAGTTAATCCGCTTGAGT+TGG + Chr8:19462138-19462157 MsG0880043129.01.T01:intron 40.0%
ACCAAGAAGAGGTAGAAACT+AGG - Chr8:19462878-19462897 None:intergenic 40.0%
AGAAACATGGGACAACCATA+TGG + Chr8:19460829-19460848 MsG0880043129.01.T01:CDS 40.0%
AGCGAAACAGATTCAGAACT+TGG + Chr8:19464203-19464222 MsG0880043129.01.T01:CDS 40.0%
ATATCGCTGCTAAGTGTTTG+AGG - Chr8:19461031-19461050 None:intergenic 40.0%
ATATTTGGCCTCACTTCTGA+AGG + Chr8:19461859-19461878 MsG0880043129.01.T01:CDS 40.0%
ATGCTTGTAAAAGGACCACT+TGG + Chr8:19460861-19460880 MsG0880043129.01.T01:CDS 40.0%
ATGTCACATGTGCCAGAAAT+TGG - Chr8:19463826-19463845 None:intergenic 40.0%
ATGTTTAGGAACGCCCTTAA+AGG - Chr8:19464111-19464130 None:intergenic 40.0%
CAATTCATCCCCAAACTCTA+TGG + Chr8:19463911-19463930 MsG0880043129.01.T01:CDS 40.0%
CATAGAGTTTGGGGATGAAT+TGG - Chr8:19463913-19463932 None:intergenic 40.0%
CATCATCAAACCAACTCAAG+CGG - Chr8:19462151-19462170 None:intergenic 40.0%
CATTCGTGTTATGATCGATC+GGG - Chr8:19464074-19464093 None:intergenic 40.0%
CCAAGAAGAGGTAGAAACTA+GGG - Chr8:19462877-19462896 None:intergenic 40.0%
CTATGTTAGGTCCAAACACT+TGG + Chr8:19463968-19463987 MsG0880043129.01.T01:CDS 40.0%
CTGCTTCAACCAATTACCTA+AGG + Chr8:19463394-19463413 MsG0880043129.01.T01:CDS 40.0%
CTTAGGTAATTGGTTGAAGC+AGG - Chr8:19463396-19463415 None:intergenic 40.0%
CTTTCAAATCCTTCGCCTAT+CGG + Chr8:19463336-19463355 MsG0880043129.01.T01:CDS 40.0%
GACCTTCAACAGATATTCCA+AGG - Chr8:19463365-19463384 None:intergenic 40.0%
GACTCCCAACATGTCTATTT+CGG + Chr8:19462216-19462235 MsG0880043129.01.T01:intron 40.0%
GCAAGAGAAGTTGTATAGTG+TGG + Chr8:19461756-19461775 MsG0880043129.01.T01:CDS 40.0%
GCATTCGTGTTATGATCGAT+CGG - Chr8:19464075-19464094 None:intergenic 40.0%
GCCTAGATTGTAAGAACCTT+AGG - Chr8:19462910-19462929 None:intergenic 40.0%
GGACCTAACATAGCATGTAT+TGG - Chr8:19463961-19463980 None:intergenic 40.0%
GTGGTTGTGGTACCTATTAA+AGG + Chr8:19461370-19461389 MsG0880043129.01.T01:intron 40.0%
GTGTGATGTATGCCTCAATT+TGG - Chr8:19463864-19463883 None:intergenic 40.0%
TAATAGGTACCACAACCACA+TGG - Chr8:19461369-19461388 None:intergenic 40.0%
TATCGCTGCTAAGTGTTTGA+GGG - Chr8:19461030-19461049 None:intergenic 40.0%
TCAAAAATAGCGGCAGAGTA+CGG + Chr8:19460981-19461000 MsG0880043129.01.T01:CDS 40.0%
TCAGAAGTGAGGCCAAATAT+TGG - Chr8:19461859-19461878 None:intergenic 40.0%
TCCACCGAAATAGACATGTT+GGG - Chr8:19462223-19462242 None:intergenic 40.0%
TCTTGGTTGATCGTTTCCTA+AGG + Chr8:19462891-19462910 MsG0880043129.01.T01:CDS 40.0%
TGGCTTAAGCCATAGAGTTT+GGG - Chr8:19463923-19463942 None:intergenic 40.0%
TTGACCATAATGCACATTGG+TGG - Chr8:19464319-19464338 None:intergenic 40.0%
TTGAGTTCTACACCTTCACA+AGG - Chr8:19462965-19462984 None:intergenic 40.0%
TTGCAAACCCAACCGTAATT+AGG - Chr8:19461404-19461423 None:intergenic 40.0%
TTGGCTTAAGCCATAGAGTT+TGG - Chr8:19463924-19463943 None:intergenic 40.0%
! AAGGCTGATCCTACCTATTT+TGG + Chr8:19460452-19460471 MsG0880043129.01.T01:CDS 40.0%
! ACTTCCTGCCTCATTTGTTT+TGG - Chr8:19464528-19464547 None:intergenic 40.0%
! AGTCGTAATGGGAAGAAACA+TGG + Chr8:19460816-19460835 MsG0880043129.01.T01:intron 40.0%
! AGTGGTCCTTTTACAAGCAT+TGG - Chr8:19460861-19460880 None:intergenic 40.0%
! ATTGGTTCATCGGATGGATT+TGG - Chr8:19463943-19463962 None:intergenic 40.0%
! GGAATATGGTTAGGTCTTGT+TGG + Chr8:19461778-19461797 MsG0880043129.01.T01:CDS 40.0%
! GTCGTAATGGGAAGAAACAT+GGG + Chr8:19460817-19460836 MsG0880043129.01.T01:intron 40.0%
! GTTGAACTGACTTCCTTATG+GGG - Chr8:19462369-19462388 None:intergenic 40.0%
! GTTGGAGTATCAAATTTGGC+TGG + Chr8:19462692-19462711 MsG0880043129.01.T01:CDS 40.0%
! TCTCGTATTTTGCCTTGTGA+AGG + Chr8:19462950-19462969 MsG0880043129.01.T01:CDS 40.0%
!! ATTGGGCTTTAGGCTAAGTA+AGG - Chr8:19462539-19462558 None:intergenic 40.0%
!!! GTCCTTTTACAAGCATTGGA+CGG - Chr8:19460857-19460876 None:intergenic 40.0%
ACATGTCTATTTCGGTGGAC+TGG + Chr8:19462224-19462243 MsG0880043129.01.T01:intron 45.0%
AGGACCAAAACAAATGAGGC+AGG + Chr8:19464521-19464540 MsG0880043129.01.T01:CDS 45.0%
AGGTTCTTACAATCTAGGCG+CGG + Chr8:19462911-19462930 MsG0880043129.01.T01:CDS 45.0%
CAACAAGGGACTGATATGGA+AGG - Chr8:19464293-19464312 None:intergenic 45.0%
CACATGTGCCAGAAATTGGT+AGG - Chr8:19463822-19463841 None:intergenic 45.0%
CCCTAGTTTCTACCTCTTCT+TGG + Chr8:19462874-19462893 MsG0880043129.01.T01:CDS 45.0%
CCTTGTGCACCAAAATAGGT+AGG - Chr8:19460464-19460483 None:intergenic 45.0%
CGCCTTGGAATATCTGTTGA+AGG + Chr8:19463360-19463379 MsG0880043129.01.T01:CDS 45.0%
GAAGCCACCAATGTGCATTA+TGG + Chr8:19464312-19464331 MsG0880043129.01.T01:CDS 45.0%
GACTTCCTTATGGGGTATGA+AGG - Chr8:19462361-19462380 None:intergenic 45.0%
GCGAAGGATTTGAAAGCAAC+TGG - Chr8:19463332-19463351 None:intergenic 45.0%
GCTTCAACAAGGGACTGATA+TGG - Chr8:19464297-19464316 None:intergenic 45.0%
GGAAACGATCAACCAAGAAG+AGG - Chr8:19462889-19462908 None:intergenic 45.0%
GGAGAGATATCTTTGCTTGC+TGG + Chr8:19462713-19462732 MsG0880043129.01.T01:CDS 45.0%
GGCTTAAGCCATAGAGTTTG+GGG - Chr8:19463922-19463941 None:intergenic 45.0%
GTCCACCGAAATAGACATGT+TGG - Chr8:19462224-19462243 None:intergenic 45.0%
GTTGCATCCATTTGCTCATC+TGG + Chr8:19464546-19464565 MsG0880043129.01.T01:CDS 45.0%
TAGGTCCAAACACTTGGCTT+TGG + Chr8:19463974-19463993 MsG0880043129.01.T01:CDS 45.0%
TCCCAACATGTCTATTTCGG+TGG + Chr8:19462219-19462238 MsG0880043129.01.T01:intron 45.0%
TGATGCAACCTTCAGAAGTG+AGG - Chr8:19461870-19461889 None:intergenic 45.0%
TTAAATGAGACCCCCACAAG+TGG + Chr8:19462271-19462290 MsG0880043129.01.T01:intron 45.0%
TTGGTTGAAGCAGGTCCATA+AGG - Chr8:19463387-19463406 None:intergenic 45.0%
! AGGGAGCATAGTGAAGGAAA+AGG - Chr8:19462858-19462877 None:intergenic 45.0%
! AGTGTGGGAGTTCTTGTTTC+AGG + Chr8:19464501-19464520 MsG0880043129.01.T01:CDS 45.0%
! CACATTGGTGGCTTCAACAA+GGG - Chr8:19464307-19464326 None:intergenic 45.0%
! CTCAACTTCTCTAAGGGACA+TGG + Chr8:19462980-19462999 MsG0880043129.01.T01:CDS 45.0%
! GAAACTAGGGAGCATAGTGA+AGG - Chr8:19462864-19462883 None:intergenic 45.0%
! GTTGAACTTGGTGAGACTGT+TGG - Chr8:19464240-19464259 None:intergenic 45.0%
! TGGGGATGAATTGGAGTATC+TGG - Chr8:19463904-19463923 None:intergenic 45.0%
!! AAGCATTGGACGGTTCCATA+TGG - Chr8:19460847-19460866 None:intergenic 45.0%
!! ATTGGTGGTGCTGTTGTTTC+TGG + Chr8:19460358-19460377 MsG0880043129.01.T01:CDS 45.0%
!! GCATGTATTGGTTCATCGGA+TGG - Chr8:19463949-19463968 None:intergenic 45.0%
!! GCTTGCTGGTTTGTTCTTGT+GGG + Chr8:19462727-19462746 MsG0880043129.01.T01:CDS 45.0%
!! TGCTTGCTGGTTTGTTCTTG+TGG + Chr8:19462726-19462745 MsG0880043129.01.T01:CDS 45.0%
!! TTGGTGGTGCTGTTGTTTCT+GGG + Chr8:19460359-19460378 MsG0880043129.01.T01:CDS 45.0%
!!! CCTACCTATTTTGGTGCACA+AGG + Chr8:19460461-19460480 MsG0880043129.01.T01:CDS 45.0%
!!! TTGTTTTTTCCGGTGACACG+TGG + Chr8:19461820-19461839 MsG0880043129.01.T01:CDS 45.0%
AATCTCACCGACCACTTGTG+GGG - Chr8:19462285-19462304 None:intergenic 50.0%
ACAGATGATCCACGTGTCAC+CGG - Chr8:19461832-19461851 None:intergenic 50.0%
CAATCTCACCGACCACTTGT+GGG - Chr8:19462286-19462305 None:intergenic 50.0%
CAGGCATGACACACTTGTGA+TGG + Chr8:19463651-19463670 MsG0880043129.01.T01:intron 50.0%
CCAAGCCAAAGCCAAGTGTT+TGG - Chr8:19463982-19464001 None:intergenic 50.0%
GATATTCCAAGGCGACCGAT+AGG - Chr8:19463354-19463373 None:intergenic 50.0%
GTAAGTAGGGATCATCGCCT+TGG - Chr8:19462019-19462038 None:intergenic 50.0%
GTTGCCTAAAATCCGTGGCA+AGG + Chr8:19460433-19460452 MsG0880043129.01.T01:CDS 50.0%
TCAATCTCACCGACCACTTG+TGG - Chr8:19462287-19462306 None:intergenic 50.0%
! ACACTTGTGATGGTGAGTGG+AGG + Chr8:19463661-19463680 MsG0880043129.01.T01:CDS 50.0%
! GACACACTTGTGATGGTGAG+TGG + Chr8:19463658-19463677 MsG0880043129.01.T01:CDS 50.0%
! GCACATTGGTGGCTTCAACA+AGG - Chr8:19464308-19464327 None:intergenic 50.0%
! TCAGCCTTGCCACGGATTTT+AGG - Chr8:19460440-19460459 None:intergenic 50.0%
!! CCAAACACTTGGCTTTGGCT+TGG + Chr8:19463979-19463998 MsG0880043129.01.T01:CDS 50.0%
!! TTGGCTTGGACACATGCTCA+TGG + Chr8:19461900-19461919 MsG0880043129.01.T01:CDS 50.0%
AGAGGTCATTCTGCTGGCAG+CGG - Chr8:19462394-19462413 None:intergenic 55.0%
AGGTAGGATCAGCCTTGCCA+CGG - Chr8:19460448-19460467 None:intergenic 55.0%
ATCTAGGCGCGGTGTTCGTT+TGG + Chr8:19462922-19462941 MsG0880043129.01.T01:CDS 55.0%
ATCTCACCGACCACTTGTGG+GGG - Chr8:19462284-19462303 None:intergenic 55.0%
ATGAGACCCCCACAAGTGGT+CGG + Chr8:19462275-19462294 MsG0880043129.01.T01:intron 55.0%
! GTGATGGTGAGTGGAGGAAG+TGG + Chr8:19463667-19463686 MsG0880043129.01.T01:CDS 55.0%
CCAAGGCGACCGATAGGCGA+AGG - Chr8:19463348-19463367 None:intergenic 65.0%
CCTTCGCCTATCGGTCGCCT+TGG + Chr8:19463345-19463364 MsG0880043129.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 19460326 19464614 19460326 ID=MsG0880043129.01;Name=MsG0880043129.01
Chr8 mRNA 19460326 19464614 19460326 ID=MsG0880043129.01.T01;Parent=MsG0880043129.01;Name=MsG0880043129.01.T01;_AED=0.17;_eAED=0.17;_QI=0|0|0|1|1|1|8|0|701
Chr8 exon 19460326 19460482 19460326 ID=MsG0880043129.01.T01:exon:3901;Parent=MsG0880043129.01.T01
Chr8 exon 19460610 19460715 19460610 ID=MsG0880043129.01.T01:exon:3902;Parent=MsG0880043129.01.T01
Chr8 exon 19460818 19461012 19460818 ID=MsG0880043129.01.T01:exon:3903;Parent=MsG0880043129.01.T01
Chr8 exon 19461753 19461987 19461753 ID=MsG0880043129.01.T01:exon:3904;Parent=MsG0880043129.01.T01
Chr8 exon 19462674 19463001 19462674 ID=MsG0880043129.01.T01:exon:3905;Parent=MsG0880043129.01.T01
Chr8 exon 19463172 19463415 19463172 ID=MsG0880043129.01.T01:exon:3906;Parent=MsG0880043129.01.T01
Chr8 exon 19463654 19464354 19463654 ID=MsG0880043129.01.T01:exon:3907;Parent=MsG0880043129.01.T01
Chr8 exon 19464475 19464614 19464475 ID=MsG0880043129.01.T01:exon:3908;Parent=MsG0880043129.01.T01
Chr8 CDS 19460326 19460482 19460326 ID=MsG0880043129.01.T01:cds;Parent=MsG0880043129.01.T01
Chr8 CDS 19460610 19460715 19460610 ID=MsG0880043129.01.T01:cds;Parent=MsG0880043129.01.T01
Chr8 CDS 19460818 19461012 19460818 ID=MsG0880043129.01.T01:cds;Parent=MsG0880043129.01.T01
Chr8 CDS 19461753 19461987 19461753 ID=MsG0880043129.01.T01:cds;Parent=MsG0880043129.01.T01
Chr8 CDS 19462674 19463001 19462674 ID=MsG0880043129.01.T01:cds;Parent=MsG0880043129.01.T01
Chr8 CDS 19463172 19463415 19463172 ID=MsG0880043129.01.T01:cds;Parent=MsG0880043129.01.T01
Chr8 CDS 19463654 19464354 19463654 ID=MsG0880043129.01.T01:cds;Parent=MsG0880043129.01.T01
Chr8 CDS 19464475 19464614 19464475 ID=MsG0880043129.01.T01:cds;Parent=MsG0880043129.01.T01
Gene Sequence

>MsG0880043129.01.T01

ATGGCTCGTGAGGCTCAATCTATAATAAGGTTATTGGTGGTGCTGTTGTTTCTGGGTTTTATTATGATTTGGATAATGATGCCTACAAATACTTTCAATCTAAAATGGTTGCCTAAAATCCGTGGCAAGGCTGATCCTACCTATTTTGGTGCACAAGGTGAAACGATCCTTATGTACACTTTTCCAGTCTTGTTAATAGCTACTTTGGGATGTGTCTATCTACACATAGCCAAAAAATCATCAAATGAGAGCAACATAGAAATTCGTAATGGGAAGAAACATGGGACAACCATATGGAACCGTCCAATGCTTGTAAAAGGACCACTTGGAATTGTTTCTATCACAGAGATAGCATTCTTGCTTATGTTCATTGCTCTTCTTGTTTGGTCTTTTACAACTTATTTGCACATCGGTTTTAAAACAGTCTCAAAAATAGCGGCAGAGTACGGCAATACAGTTGAGCAAGAGAAGTTGTATAGTGTGGGAATATGGTTAGGTCTTGTTGGGAACATATGTTTGGCATTCTTGTTTTTTCCGGTGACACGTGGATCATCTGTGCTACCAATATTTGGCCTCACTTCTGAAGGTTGCATCAAGTATCATATTTGGCTTGGACACATGCTCATGGCAATTTTCACAACTCATGGAATTTGTTACATCATCCATTGGGCATCTACTAATCAAATGTCAGAGATGTTGATATGGACCAAAGTTGGAGTATCAAATTTGGCTGGAGAGATATCTTTGCTTGCTGGTTTGTTCTTGTGGGTTGCAACCATTCCCAAAATTAGGAGAAAATTCTTTGAGCTCTTTTTTTACACTCATTACCTCTACATAATCTTCATCATCTTCTACATATTTCATGTTGACATTTCCTTTTCCTTCACTATGCTCCCTAGTTTCTACCTCTTCTTGGTTGATCGTTTCCTAAGGTTCTTACAATCTAGGCGCGGTGTTCGTTTGGTTTCATCTCGTATTTTGCCTTGTGAAGGTGTAGAACTCAACTTCTCTAAGGGACATGGGTTGACTTATAATCCCACAAGTGTAATGTTCATAAATGTACCAAGCATATCAAAGTTGCAATGGCATCCATTTACTGTTACTTCTAATAGTAAATTGGAACCAGAAAAGCTAAGTGTTGTCATTAAATGTGGAGGAAATTGGACACAGAAGCTCTACCAGTTGCTTTCAAATCCTTCGCCTATCGGTCGCCTTGGAATATCTGTTGAAGGTCCTTATGGACCTGCTTCAACCAATTACCTAAGGCATGACACACTTGTGATGGTGAGTGGAGGAAGTGGTATCACACCGTTTTTTTCAATTATTAGAGAGCTAATATATCTTAGCAATACATTCAAATGCAAGACACCAAACATTGTCCTAATTTCTTCATTCAAGAACACTTCATGTCTATCAATGCTAGATTTGATCCTACCAATTTCTGGCACATGTGACATTTCTAATATTCAACTCCAAATTGAGGCATACATCACACGAGACAGAGAGTTTAAACCAGATACTCCAATTCATCCCCAAACTCTATGGCTTAAGCCAAATCCATCCGATGAACCAATACATGCTATGTTAGGTCCAAACACTTGGCTTTGGCTTGGTGCAATAATCACATCCTCATTCATCATCTTCCTAATTATAATCGGGGTCATTACTCGTTACTACATTTTCCCGATCGATCATAACACGAATGCAATATTCTCGGATCCTTTAAGGGCGTTCCTAAACATGCTAGTAATATGTGTGTCGATAGCTGTTGTTTCAAGTGTAGCTGTCTTATGGAACAAACAAAATGCTAAAGAAGCGAAACAGATTCAGAACTTGGAAGGGTCATCACCAACAGTCTCACCAAGTTCAACGATTTATAATGCAGATAGAGAATTAGAAAGCCTTCCATATCAGTCCCTTGTTGAAGCCACCAATGTGCATTATGGTCAAAGACCTGATCTTAAAAGACTTCTATTTGAAATAAAAGGGTCAAGTGTGGGAGTTCTTGTTTCAGGACCAAAACAAATGAGGCAGGAAGTTGCATCCATTTGCTCATCTGGTTTAGTTGAAAATTTGCATTTTGAATCAATCAGTTTTACTTGGTAA
Protein sequence

>MsG0880043129.01.T01

MAREAQSIIRLLVVLLFLGFIMIWIMMPTNTFNLKWLPKIRGKADPTYFGAQGETILMYTFPVLLIATLGCVYLHIAKKSSNESNIEIRNGKKHGTTIWNRPMLVKGPLGIVSITEIAFLLMFIALLVWSFTTYLHIGFKTVSKIAAEYGNTVEQEKLYSVGIWLGLVGNICLAFLFFPVTRGSSVLPIFGLTSEGCIKYHIWLGHMLMAIFTTHGICYIIHWASTNQMSEMLIWTKVGVSNLAGEISLLAGLFLWVATIPKIRRKFFELFFYTHYLYIIFIIFYIFHVDISFSFTMLPSFYLFLVDRFLRFLQSRRGVRLVSSRILPCEGVELNFSKGHGLTYNPTSVMFINVPSISKLQWHPFTVTSNSKLEPEKLSVVIKCGGNWTQKLYQLLSNPSPIGRLGISVEGPYGPASTNYLRHDTLVMVSGGSGITPFFSIIRELIYLSNTFKCKTPNIVLISSFKNTSCLSMLDLILPISGTCDISNIQLQIEAYITRDREFKPDTPIHPQTLWLKPNPSDEPIHAMLGPNTWLWLGAIITSSFIIFLIIIGVITRYYIFPIDHNTNAIFSDPLRAFLNMLVICVSIAVVSSVAVLWNKQNAKEAKQIQNLEGSSPTVSPSSTIYNADRELESLPYQSLVEATNVHYGQRPDLKRLLFEIKGSSVGVLVSGPKQMRQEVASICSSGLVENLHFESISFTW*