AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019146.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019146.01.T01 MTR_4g023730 95.417 240 11 0 1 240 90 329 2.20e-161 450
MsG0480019146.01.T01 MTR_7g074710 47.917 240 123 2 1 240 89 326 1.52e-76 234
MsG0480019146.01.T01 MTR_7g074880 47.083 240 125 2 1 240 89 326 1.31e-74 229
MsG0480019146.01.T01 MTR_7g074850 47.521 242 124 2 1 240 89 329 2.92e-74 229
MsG0480019146.01.T01 MTR_7g074730 46.473 241 127 2 1 240 89 328 1.29e-71 222
MsG0480019146.01.T01 MTR_7g074870 46.667 240 126 2 1 240 51 288 3.31e-71 219
MsG0480019146.01.T01 MTR_7g074820 45.868 242 128 2 1 240 89 329 2.85e-70 218
MsG0480019146.01.T01 MTR_1g022440 39.583 240 143 1 1 240 88 325 3.15e-63 201
MsG0480019146.01.T01 MTR_1g022445 38.333 240 146 1 1 240 88 325 2.34e-60 193
MsG0480019146.01.T01 MTR_4g081440 36.170 235 137 4 16 240 123 354 4.26e-42 147
MsG0480019146.01.T01 MTR_4g092080 32.258 248 156 5 1 239 93 337 6.04e-42 145
MsG0480019146.01.T01 MTR_4g081440 35.745 235 137 4 16 240 119 349 2.24e-41 144
MsG0480019146.01.T01 MTR_2g101330 28.870 239 158 5 5 240 90 319 6.16e-31 117
MsG0480019146.01.T01 MTR_5g056600 28.761 226 152 5 17 240 101 319 5.06e-27 106
MsG0480019146.01.T01 MTR_4g009040 32.773 238 141 9 8 240 100 323 1.11e-24 100
MsG0480019146.01.T01 MTR_3g031650 28.455 246 148 8 6 240 91 319 1.13e-24 100
MsG0480019146.01.T01 MTR_4g006940 32.203 236 148 8 8 240 100 326 9.75e-24 97.8
MsG0480019146.01.T01 MTR_4g009040 32.340 235 140 9 11 240 107 327 2.97e-23 96.3
MsG0480019146.01.T01 MTR_5g072620 29.339 242 149 8 7 240 92 319 8.89e-23 94.7
MsG0480019146.01.T01 MTR_2g013230 28.629 248 156 7 10 240 7 250 2.59e-22 92.4
MsG0480019146.01.T01 MTR_2g013230 28.629 248 156 7 10 240 97 340 1.01e-21 92.4
MsG0480019146.01.T01 MTR_8g062440 32.673 202 123 5 6 204 93 284 1.58e-21 91.7
MsG0480019146.01.T01 MTR_3g005210 31.892 185 114 4 6 185 91 268 2.29e-21 90.9
MsG0480019146.01.T01 MTR_3g005170 31.892 185 114 7 6 185 95 272 3.38e-21 89.7
MsG0480019146.01.T01 MTR_3g005170 31.892 185 114 7 6 185 64 241 4.58e-21 89.7
MsG0480019146.01.T01 MTR_2g104960 31.064 235 152 8 8 240 103 329 5.16e-21 90.5
MsG0480019146.01.T01 MTR_3g005170 31.892 185 114 6 6 185 95 272 7.11e-21 89.7
MsG0480019146.01.T01 MTR_8g062440 32.447 188 118 4 6 190 93 274 9.77e-21 89.4
MsG0480019146.01.T01 MTR_2g028620 28.870 239 155 10 7 240 98 326 1.06e-20 89.4
MsG0480019146.01.T01 MTR_8g062440 32.447 188 118 4 6 190 94 275 1.06e-20 89.4
MsG0480019146.01.T01 MTR_7g117190 29.119 261 150 9 6 240 89 340 1.19e-20 89.4
MsG0480019146.01.T01 MTR_3g031650 29.474 190 121 5 6 190 91 272 5.76e-20 86.3
MsG0480019146.01.T01 MTR_4g006940 32.432 185 115 6 8 189 100 277 1.16e-19 85.9
MsG0480019146.01.T01 MTR_4g006940 32.432 185 115 6 8 189 100 277 1.16e-19 85.9
MsG0480019146.01.T01 MTR_7g117190 29.958 237 134 8 27 240 3 230 2.68e-19 84.0
MsG0480019146.01.T01 MTR_8g062110 28.042 189 125 5 6 190 94 275 1.09e-18 83.2
MsG0480019146.01.T01 MTR_8g062110 27.513 189 126 4 6 190 94 275 1.32e-18 82.8
MsG0480019146.01.T01 MTR_8g062110 27.660 188 125 4 7 190 104 284 1.72e-18 83.2
MsG0480019146.01.T01 MTR_8g062110 27.513 189 126 4 6 190 94 275 1.94e-18 83.2
MsG0480019146.01.T01 MTR_4g009690 29.060 234 154 6 8 240 100 322 4.72e-18 82.0
MsG0480019146.01.T01 MTR_2g013250 26.721 247 154 8 12 238 98 337 7.74e-18 81.6
MsG0480019146.01.T01 MTR_8g062110 27.957 186 123 5 9 190 11 189 9.25e-18 79.0
MsG0480019146.01.T01 MTR_8g062110 28.492 179 117 4 16 190 18 189 1.12e-17 79.7
MsG0480019146.01.T01 MTR_4g009690 28.632 234 156 6 8 240 100 323 2.20e-17 80.1
MsG0480019146.01.T01 MTR_4g077130 28.646 192 123 8 7 193 95 277 2.38e-17 80.1
MsG0480019146.01.T01 MTR_2g028620 28.877 187 123 6 7 189 98 278 5.90e-16 75.9
MsG0480019146.01.T01 MTR_7g117190 28.571 210 119 8 6 189 89 293 1.92e-13 68.9
MsG0480019146.01.T01 MTR_2g013260 27.530 247 152 7 12 238 28 267 2.50e-13 68.2
MsG0480019146.01.T01 MTR_4g077100 27.225 191 127 5 7 193 97 279 2.95e-13 68.2
MsG0480019146.01.T01 MTR_3g011130 36.522 115 66 4 17 127 35 146 3.06e-13 65.5
MsG0480019146.01.T01 MTR_4g077100 27.225 191 127 5 7 193 97 279 3.47e-13 68.2
MsG0480019146.01.T01 MTR_2g013260 27.530 247 152 7 12 238 99 338 4.45e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019146.01.T01 AT2G45400 47.561 246 120 5 1 240 65 307 2.90e-70 218
MsG0480019146.01.T01 AT2G45400 47.561 246 120 5 1 240 122 364 1.62e-69 218
MsG0480019146.01.T01 AT2G45400 49.231 195 92 4 1 189 122 315 9.46e-57 184
MsG0480019146.01.T01 AT5G42800 38.750 240 145 1 1 240 88 325 2.35e-55 182
MsG0480019146.01.T01 AT2G45400 54.135 133 56 2 1 128 122 254 7.64e-40 138
MsG0480019146.01.T01 AT1G61720 33.205 259 141 6 1 240 92 337 8.33e-40 140
MsG0480019146.01.T01 AT4G35420 32.627 236 147 6 8 240 95 321 1.01e-39 140
MsG0480019146.01.T01 AT4G27250 32.353 238 140 6 9 231 106 337 4.92e-31 117
MsG0480019146.01.T01 AT4G27250 31.602 231 141 5 9 231 106 327 6.47e-30 114
MsG0480019146.01.T01 AT1G68540 28.750 240 162 5 4 240 88 321 5.53e-27 106
MsG0480019146.01.T01 AT2G02400 28.151 238 157 8 7 240 91 318 1.45e-25 102
MsG0480019146.01.T01 AT1G25460 28.571 231 148 6 17 240 99 319 2.35e-25 102
MsG0480019146.01.T01 AT1G68540 29.545 220 146 5 24 240 1 214 8.52e-25 98.2
MsG0480019146.01.T01 AT1G51410 31.915 188 118 6 6 189 94 275 3.21e-23 96.3
MsG0480019146.01.T01 AT1G15950 31.878 229 143 8 16 240 5 224 1.23e-22 93.2
MsG0480019146.01.T01 AT1G15950 31.489 235 148 8 10 240 97 322 1.42e-22 94.7
MsG0480019146.01.T01 AT1G15950 31.489 235 148 8 10 240 97 322 1.42e-22 94.7
MsG0480019146.01.T01 AT2G33590 31.532 222 127 6 8 220 96 301 2.67e-22 93.6
MsG0480019146.01.T01 AT5G58490 29.388 245 147 8 6 240 95 323 9.21e-22 92.0
MsG0480019146.01.T01 AT1G15950 31.390 223 141 7 10 228 97 311 2.97e-21 90.9
MsG0480019146.01.T01 AT5G19440 29.167 240 151 10 6 238 95 322 1.51e-20 89.0
MsG0480019146.01.T01 AT1G09510 31.148 183 116 4 7 185 94 270 3.04e-20 88.2
MsG0480019146.01.T01 AT1G80820 29.915 234 153 7 10 240 92 317 2.45e-19 85.5
MsG0480019146.01.T01 AT1G09480 29.293 198 130 4 6 199 93 284 8.70e-19 84.0
MsG0480019146.01.T01 AT1G76470 33.191 235 147 6 9 240 95 322 1.06e-18 84.0
MsG0480019146.01.T01 AT1G09480 29.293 198 130 4 6 199 140 331 1.55e-18 84.0
MsG0480019146.01.T01 AT1G15950 32.240 183 115 5 10 189 97 273 5.58e-18 81.3
MsG0480019146.01.T01 AT1G15950 32.240 183 115 5 10 189 97 273 7.26e-18 80.9
MsG0480019146.01.T01 AT1G15950 32.240 183 115 5 10 189 97 273 9.12e-18 80.9
MsG0480019146.01.T01 AT1G09490 27.778 198 131 4 7 199 63 253 4.33e-17 79.0
MsG0480019146.01.T01 AT1G66800 29.670 182 116 4 7 185 94 266 5.06e-17 79.0
MsG0480019146.01.T01 AT1G09490 27.778 198 131 4 7 199 94 284 5.98e-17 79.0
MsG0480019146.01.T01 AT2G33600 31.163 215 137 5 8 220 96 301 1.17e-16 78.2
MsG0480019146.01.T01 AT1G09500 27.473 182 124 4 7 185 95 271 7.94e-16 75.1
MsG0480019146.01.T01 AT1G09500 27.419 186 127 4 7 189 61 241 1.13e-15 75.1
MsG0480019146.01.T01 AT1G09500 27.419 186 127 4 7 189 95 275 1.30e-15 75.1
MsG0480019146.01.T01 AT1G80820 30.601 183 118 5 10 189 92 268 5.22e-15 72.8

Find 40 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACAGATGAAGGTATATT+AGG 0.198356 4:+15036331 None:intergenic
CCTTGTTGGATCTTCTTATT+TGG 0.209176 4:-15036458 MsG0480019146.01.T01:CDS
TTTGAGTGTGAAAATGTTAA+TGG 0.229940 4:-15035839 MsG0480019146.01.T01:CDS
TATGACTGAAAAGAGTGTTT+TGG 0.313303 4:-15036425 MsG0480019146.01.T01:CDS
TTGGTTCTTCCTTTGGTTGT+TGG 0.320036 4:-15036367 MsG0480019146.01.T01:CDS
TGTTAGTTTGGTTCTTCCTT+TGG 0.331534 4:-15036374 MsG0480019146.01.T01:CDS
ATAGCACTCGCCATGATCTT+TGG 0.336027 4:-15036307 MsG0480019146.01.T01:intron
AACTTACTTTGGTATTGTTA+TGG 0.339526 4:+15035739 None:intergenic
TGAATTGAAGGTTGTTAGTT+TGG 0.347694 4:-15036386 MsG0480019146.01.T01:CDS
CTTCTCTTCACAGCATTGTA+TGG 0.348565 4:+15034569 None:intergenic
AAACAGATGAAGGTATATTA+GGG 0.372509 4:+15036332 None:intergenic
TGTAAAAGTAGTAACCTTGT+TGG 0.375771 4:-15036472 MsG0480019146.01.T01:CDS
AGGTATATTAGGGCAAATAA+AGG 0.389280 4:+15036342 None:intergenic
TGAGATACTTGTATCTATCT+TGG 0.401199 4:+15035915 None:intergenic
AACATGCTTTCAAAATTCCT+AGG 0.409374 4:+15036608 None:intergenic
TTGCTTTGTCAAAGATATCC+AGG 0.443021 4:-15035767 MsG0480019146.01.T01:CDS
AAACCAAGAGCCAGAAGAAA+AGG 0.479277 4:-15036656 MsG0480019146.01.T01:CDS
TGGAAAAGTGAATGAATTGA+AGG 0.484535 4:-15036398 MsG0480019146.01.T01:CDS
GGTATATTAGGGCAAATAAA+GGG 0.489769 4:+15036343 None:intergenic
ATGTGGTGGATGAAGATGTT+TGG 0.490382 4:-15036510 MsG0480019146.01.T01:CDS
GAAATACATACCAAAGATCA+TGG 0.501496 4:+15036297 None:intergenic
ACATGCTTTCAAAATTCCTA+GGG 0.520879 4:+15036609 None:intergenic
CATACAATGCTGTGAAGAGA+AGG 0.526379 4:-15034568 MsG0480019146.01.T01:CDS
TAAATTTGAACCCAGCATCC+AGG 0.527299 4:+15034622 None:intergenic
AGCGTCAAAGATATGTATGA+TGG 0.533471 4:-15034594 MsG0480019146.01.T01:CDS
AGTGCTATATAAACAGATGA+AGG 0.553611 4:+15036322 None:intergenic
GGTATTGTTATGGTATACCC+TGG 0.560996 4:+15035749 None:intergenic
CAGAAATATAAGTGCACGAG+TGG 0.561375 4:+15035862 None:intergenic
AGAGCAGTGGAAGGAACCCT+AGG 0.577037 4:-15036625 MsG0480019146.01.T01:CDS
TTACACTTCTAGTGCAGCAA+CGG 0.577130 4:-15036557 MsG0480019146.01.T01:CDS
GTATCTCACCAACTCATACA+TGG 0.579056 4:-15035900 MsG0480019146.01.T01:CDS
ATAAAGGGACCAACAACCAA+AGG 0.611130 4:+15036358 None:intergenic
AGTGTGAAAATGTTAATGGA+AGG 0.611428 4:-15035835 MsG0480019146.01.T01:CDS
TGCTTTGTCAAAGATATCCA+GGG 0.611825 4:-15035766 MsG0480019146.01.T01:CDS
TGATAAGAATCTTGATGTGG+TGG 0.620407 4:-15036524 MsG0480019146.01.T01:CDS
ATACAATGCTGTGAAGAGAA+GGG 0.633933 4:-15034567 MsG0480019146.01.T01:CDS
ATGAAATGATATTCTGTCTG+AGG 0.636261 4:+15035802 None:intergenic
CCAAATAAGAAGATCCAACA+AGG 0.649216 4:+15036458 None:intergenic
TGTGTGCACCATGTATGAGT+TGG 0.669747 4:+15035892 None:intergenic
CAATGATAAGAATCTTGATG+TGG 0.698025 4:-15036527 MsG0480019146.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTTTTTGTGTAAAT+CGG + Chr4:15035087-15035106 None:intergenic 10.0%
!!! CAATTTTTTTTTATAGTTTT+TGG - Chr4:15035724-15035743 MsG0480019146.01.T01:intron 10.0%
!!! CAATTTTTTTTTATAGTTTT+TGG + Chr4:15035743-15035724 None:intergenic 10.0%
!! AAAAAATATGAAACTTACTT+TGG + Chr4:15035499-15035518 None:intergenic 15.0%
!! AAAACTATAAAAAAAATTGC+AGG - Chr4:15036134-15036153 MsG0480019146.01.T01:intron 15.0%
!! AAAACTATAAAAAAAATTGC+AGG + Chr4:15036153-15036134 None:intergenic 15.0%
!! AAACTATAAAAAAAAATTGC+AGG - Chr4:15036074-15036093 MsG0480019146.01.T01:intron 15.0%
!! AAACTATAAAAAAAAATTGC+AGG + Chr4:15036093-15036074 None:intergenic 15.0%
!! AAACTATAAAAAAAATTGCA+GGG - Chr4:15036135-15036154 MsG0480019146.01.T01:intron 15.0%
!! AAACTATAAAAAAAATTGCA+GGG + Chr4:15036154-15036135 None:intergenic 15.0%
!! AAATCTAAATAATGTATCTT+TGG + Chr4:15036435-15036454 None:intergenic 15.0%
!! AACTATAAAAAAAAATTGCA+GGG - Chr4:15036075-15036094 MsG0480019146.01.T01:intron 15.0%
!! AACTATAAAAAAAAATTGCA+GGG + Chr4:15036094-15036075 None:intergenic 15.0%
!! AACTATAAAAAAAAATTTGC+AGG + Chr4:15035784-15035803 None:intergenic 15.0%
!! ACTATAAAAAAAAATTTGCA+GGG + Chr4:15035783-15035802 None:intergenic 15.0%
!! AGGCAAAATATTATTAAATA+GGG - Chr4:15035154-15035173 MsG0480019146.01.T01:intron 15.0%
!! ATATATATTAGGCTAAAATA+TGG + Chr4:15036199-15036218 None:intergenic 15.0%
!! CAATGACTTAATTAATATAT+AGG - Chr4:15035587-15035606 MsG0480019146.01.T01:intron 15.0%
!! TAGGCAAAATATTATTAAAT+AGG - Chr4:15035153-15035172 MsG0480019146.01.T01:intron 15.0%
!! TATATCTCAAATATTAGAAT+TGG + Chr4:15035227-15035246 None:intergenic 15.0%
!! TTAATATATAGGCTAAAATA+TGG - Chr4:15035598-15035617 MsG0480019146.01.T01:intron 15.0%
!! TTAGTCATATCATATATATT+AGG + Chr4:15036210-15036229 None:intergenic 15.0%
!!! ATATTTTTTTTGTGTAAATC+GGG + Chr4:15035086-15035105 None:intergenic 15.0%
!!! GCAATTTTTTTTATAGTTTT+TGG - Chr4:15035663-15035682 MsG0480019146.01.T01:intron 15.0%
!!! GCAATTTTTTTTATAGTTTT+TGG + Chr4:15035682-15035663 None:intergenic 15.0%
!!! TATATACATTTTTTTACCTA+AGG - Chr4:15034969-15034988 MsG0480019146.01.T01:intron 15.0%
!! AAAATAATCACCCAAAAATT+AGG + Chr4:15036521-15036540 None:intergenic 20.0%
!! GGCAAAATATTATTAAATAG+GGG - Chr4:15035155-15035174 MsG0480019146.01.T01:intron 20.0%
!!! AGTTTTTAACAAAATTATGG+TGG - Chr4:15036386-15036405 MsG0480019146.01.T01:CDS 20.0%
!!! CAAAAACAAAAATTTTTGCA+GGG + Chr4:15035813-15035832 None:intergenic 20.0%
!!! CGTAGTTTTTAACAAAATTA+TGG - Chr4:15036383-15036402 MsG0480019146.01.T01:CDS 20.0%
!!! TTTTTTACTAATTTAGACCA+TGG - Chr4:15035520-15035539 MsG0480019146.01.T01:intron 20.0%
! AACTTACTTTGGTATTGTTA+TGG + Chr4:15035488-15035507 None:intergenic 25.0%
! AGTTCAATGAAGACAAAAAA+TGG - Chr4:15036543-15036562 MsG0480019146.01.T01:CDS 25.0%
! ATATGTGCTATGTTTATTAC+AGG - Chr4:15035283-15035302 MsG0480019146.01.T01:intron 25.0%
! ATTAGGCTAAAATATGGTAT+TGG + Chr4:15036193-15036212 None:intergenic 25.0%
! TAATGTATCTTTGGTTAGAT+TGG + Chr4:15036426-15036445 None:intergenic 25.0%
! TATAGGCTAAAATATGGTAT+TGG - Chr4:15035604-15035623 MsG0480019146.01.T01:intron 25.0%
! TGACAAATCATCACATAATT+GGG + Chr4:15035851-15035870 None:intergenic 25.0%
! TTTGAGTGTGAAAATGTTAA+TGG - Chr4:15035385-15035404 MsG0480019146.01.T01:intron 25.0%
!! AAACAGATGAAGGTATATTA+GGG + Chr4:15034895-15034914 None:intergenic 25.0%
!! CAAAAACACAAATTTTTGCA+GGG - Chr4:15036046-15036065 MsG0480019146.01.T01:intron 25.0%
!! CCAAAAACAAAAATTTTTGC+AGG + Chr4:15035814-15035833 None:intergenic 25.0%
!! TAAACAGATGAAGGTATATT+AGG + Chr4:15034896-15034915 None:intergenic 25.0%
!!! AGTCTACACAATGTATTTTT+TGG - Chr4:15035564-15035583 MsG0480019146.01.T01:intron 25.0%
!!! CCTGCAAAAATTTTTGTTTT+TGG - Chr4:15035811-15035830 MsG0480019146.01.T01:CDS 25.0%
!!! TATCCTTTGCTATAAGTTTT+AGG + Chr4:15035191-15035210 None:intergenic 25.0%
AACATGCTTTCAAAATTCCT+AGG + Chr4:15034619-15034638 None:intergenic 30.0%
ACATGCTTTCAAAATTCCTA+GGG + Chr4:15034618-15034637 None:intergenic 30.0%
AGGTATATTAGGGCAAATAA+AGG + Chr4:15034885-15034904 None:intergenic 30.0%
AGTGCTATATAAACAGATGA+AGG + Chr4:15034905-15034924 None:intergenic 30.0%
AGTGTGAAAATGTTAATGGA+AGG - Chr4:15035389-15035408 MsG0480019146.01.T01:intron 30.0%
ATCAAAGACAGTGAAAAAAG+TGG - Chr4:15034643-15034662 MsG0480019146.01.T01:CDS 30.0%
ATGAAATGATATTCTGTCTG+AGG + Chr4:15035425-15035444 None:intergenic 30.0%
CAATGATAAGAATCTTGATG+TGG - Chr4:15034697-15034716 MsG0480019146.01.T01:intron 30.0%
CATTGTGTAGACTAATTTGA+CGG + Chr4:15035557-15035576 None:intergenic 30.0%
GAAATACATACCAAAGATCA+TGG + Chr4:15034930-15034949 None:intergenic 30.0%
GACAAATCATCACATAATTG+GGG + Chr4:15035850-15035869 None:intergenic 30.0%
GGTATATTAGGGCAAATAAA+GGG + Chr4:15034884-15034903 None:intergenic 30.0%
GTGACAAATCATCACATAAT+TGG + Chr4:15035852-15035871 None:intergenic 30.0%
GTTCCTAAAACTTATAGCAA+AGG - Chr4:15035185-15035204 MsG0480019146.01.T01:intron 30.0%
TGAATTGAAGGTTGTTAGTT+TGG - Chr4:15034838-15034857 MsG0480019146.01.T01:intron 30.0%
TGACAAATCATCACATAACT+GGG - Chr4:15036008-15036027 MsG0480019146.01.T01:intron 30.0%
TGAGATACTTGTATCTATCT+TGG + Chr4:15035312-15035331 None:intergenic 30.0%
TGGAAAAGTGAATGAATTGA+AGG - Chr4:15034826-15034845 MsG0480019146.01.T01:intron 30.0%
TGTAAAAGTAGTAACCTTGT+TGG - Chr4:15034752-15034771 MsG0480019146.01.T01:intron 30.0%
! AAAAAGCCTAGCCTAATTTT+TGG - Chr4:15036507-15036526 MsG0480019146.01.T01:CDS 30.0%
! AAAAGCCTAGCCTAATTTTT+GGG - Chr4:15036508-15036527 MsG0480019146.01.T01:CDS 30.0%
! ATCATAGAACGTTTTCAACT+TGG + Chr4:15036281-15036300 None:intergenic 30.0%
! CCAAAAACACAAATTTTTGC+AGG - Chr4:15036045-15036064 MsG0480019146.01.T01:intron 30.0%
! CCTGCAAAAATTTGTGTTTT+TGG + Chr4:15036048-15036067 None:intergenic 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG - Chr4:15036107-15036126 MsG0480019146.01.T01:intron 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG + Chr4:15036126-15036107 None:intergenic 30.0%
!!! ATTTTTTTACCTAAGGTCCT+AGG - Chr4:15034976-15034995 MsG0480019146.01.T01:intron 30.0%
!!! TATGACTGAAAAGAGTGTTT+TGG - Chr4:15034799-15034818 MsG0480019146.01.T01:intron 30.0%
AATCACCCAAAAATTAGGCT+AGG + Chr4:15036516-15036535 None:intergenic 35.0%
AGCGTCAAAGATATGTATGA+TGG - Chr4:15036630-15036649 MsG0480019146.01.T01:CDS 35.0%
ATACAATGCTGTGAAGAGAA+GGG - Chr4:15036657-15036676 MsG0480019146.01.T01:CDS 35.0%
CCAAATAAGAAGATCCAACA+AGG + Chr4:15034769-15034788 None:intergenic 35.0%
CCTTGTTGGATCTTCTTATT+TGG - Chr4:15034766-15034785 MsG0480019146.01.T01:intron 35.0%
GAAGAGTTTGTCATCCATTT+GGG - Chr4:15035042-15035061 MsG0480019146.01.T01:intron 35.0%
GACAAATCATCACATAACTG+GGG - Chr4:15036009-15036028 MsG0480019146.01.T01:intron 35.0%
GTGACAAATCATCACATAAC+TGG - Chr4:15036007-15036026 MsG0480019146.01.T01:intron 35.0%
TCTATCATCAAAAAAGCTCC+TGG - Chr4:15036584-15036603 MsG0480019146.01.T01:CDS 35.0%
TGACTTCGACAAAATCATAG+TGG - Chr4:15036333-15036352 MsG0480019146.01.T01:CDS 35.0%
TGATAAGAATCTTGATGTGG+TGG - Chr4:15034700-15034719 MsG0480019146.01.T01:intron 35.0%
TGCTTTGTCAAAGATATCCA+GGG - Chr4:15035458-15035477 MsG0480019146.01.T01:intron 35.0%
TTGCTTTGTCAAAGATATCC+AGG - Chr4:15035457-15035476 MsG0480019146.01.T01:intron 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG - Chr4:15035750-15035769 MsG0480019146.01.T01:CDS 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG + Chr4:15035769-15035750 None:intergenic 35.0%
! CTTTTTGTCACCTTTTCTTC+TGG + Chr4:15034581-15034600 None:intergenic 35.0%
!! ACAAGAGCGTTAAAACTCTT+CGG - Chr4:15035020-15035039 MsG0480019146.01.T01:intron 35.0%
!! TGTTAGTTTGGTTCTTCCTT+TGG - Chr4:15034850-15034869 MsG0480019146.01.T01:intron 35.0%
!! TTTTTGGTCCCTGCAAAAAT+AGG - Chr4:15035740-15035759 MsG0480019146.01.T01:intron 35.0%
!! TTTTTGGTCCCTGCAAAAAT+AGG + Chr4:15035759-15035740 None:intergenic 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG - Chr4:15036106-15036125 MsG0480019146.01.T01:intron 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG + Chr4:15036125-15036106 None:intergenic 35.0%
!!! GAAAAGAGTGTTTTGGAGTT+TGG - Chr4:15034806-15034825 MsG0480019146.01.T01:intron 35.0%
!!! TTGTCACTTTTGTGCATATG+TGG - Chr4:15035865-15035884 MsG0480019146.01.T01:CDS 35.0%
AAACCAAGAGCCAGAAGAAA+AGG - Chr4:15034568-15034587 MsG0480019146.01.T01:CDS 40.0%
AAAGGTGACAAAAAGAGCAG+TGG - Chr4:15034586-15034605 MsG0480019146.01.T01:CDS 40.0%
ATAAAGGGACCAACAACCAA+AGG + Chr4:15034869-15034888 None:intergenic 40.0%
ATCATCACATAACTGGGGTT+AGG - Chr4:15036014-15036033 MsG0480019146.01.T01:intron 40.0%
CAGAAATATAAGTGCACGAG+TGG + Chr4:15035365-15035384 None:intergenic 40.0%
CATACAATGCTGTGAAGAGA+AGG - Chr4:15036656-15036675 MsG0480019146.01.T01:CDS 40.0%
CTTCTCTTCACAGCATTGTA+TGG + Chr4:15036658-15036677 None:intergenic 40.0%
GGAAGAGTTTGTCATCCATT+TGG - Chr4:15035041-15035060 MsG0480019146.01.T01:intron 40.0%
GGTATTGTTATGGTATACCC+TGG + Chr4:15035478-15035497 None:intergenic 40.0%
GTATCTCACCAACTCATACA+TGG - Chr4:15035324-15035343 MsG0480019146.01.T01:intron 40.0%
TAAATTTGAACCCAGCATCC+AGG + Chr4:15036605-15036624 None:intergenic 40.0%
TCATCACATAACTGGGGTTA+GGG - Chr4:15036015-15036034 MsG0480019146.01.T01:intron 40.0%
TCATCACATAATTGGGGTCA+TGG + Chr4:15035844-15035863 None:intergenic 40.0%
TGACGGAGTTTACAATTCCA+TGG + Chr4:15035540-15035559 None:intergenic 40.0%
TTACACTTCTAGTGCAGCAA+CGG - Chr4:15034667-15034686 MsG0480019146.01.T01:CDS 40.0%
! AAAACTGGCCTGTATTTGCA+GGG + Chr4:15035690-15035709 None:intergenic 40.0%
! TTGGTTCTTCCTTTGGTTGT+TGG - Chr4:15034857-15034876 MsG0480019146.01.T01:intron 40.0%
!! ATGTGGTGGATGAAGATGTT+TGG - Chr4:15034714-15034733 MsG0480019146.01.T01:intron 40.0%
!! CAAAACTGGCCTATTTTGCA+GGG - Chr4:15036166-15036185 MsG0480019146.01.T01:intron 40.0%
!! CAAAACTGGCCTATTTTGCA+GGG + Chr4:15036185-15036166 None:intergenic 40.0%
!! TTTTTGGTCCCTGCAAATAC+AGG - Chr4:15035679-15035698 MsG0480019146.01.T01:intron 40.0%
ATAGCACTCGCCATGATCTT+TGG - Chr4:15034917-15034936 MsG0480019146.01.T01:intron 45.0%
CAAAAAAGCTCCTGGATGCT+GGG - Chr4:15036592-15036611 MsG0480019146.01.T01:CDS 45.0%
GCAGGGACTAAAACCAAAAC+TGG - Chr4:15036092-15036111 MsG0480019146.01.T01:intron 45.0%
GCAGGGACTAAAACCAAAAC+TGG + Chr4:15036111-15036092 None:intergenic 45.0%
GCTCTTGTATGCTCAAGACT+AGG + Chr4:15035008-15035027 None:intergenic 45.0%
GTGACAAAAAGAGCAGTGGA+AGG - Chr4:15034590-15034609 MsG0480019146.01.T01:CDS 45.0%
TCAAAAAAGCTCCTGGATGC+TGG - Chr4:15036591-15036610 MsG0480019146.01.T01:CDS 45.0%
TCAAGACTAGGTTCGAACCT+AGG + Chr4:15034996-15035015 None:intergenic 45.0%
TGTGTGCACCATGTATGAGT+TGG + Chr4:15035335-15035354 None:intergenic 45.0%
! CAAAACTGGCCTGTATTTGC+AGG + Chr4:15035691-15035710 None:intergenic 45.0%
! CCTGCAAAATAGGCCAGTTT+TGG - Chr4:15035629-15035648 MsG0480019146.01.T01:intron 45.0%
! CCTGCAAAATAGGCCAGTTT+TGG + Chr4:15035648-15035629 None:intergenic 45.0%
! CTGCAAATACAGGCCAGTTT+TGG - Chr4:15035689-15035708 MsG0480019146.01.T01:intron 45.0%
!! CCAAAACTGGCCTATTTTGC+AGG - Chr4:15036165-15036184 MsG0480019146.01.T01:intron 45.0%
!! CCAAAACTGGCCTATTTTGC+AGG + Chr4:15036184-15036165 None:intergenic 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG - Chr4:15035619-15035638 MsG0480019146.01.T01:intron 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG + Chr4:15035638-15035619 None:intergenic 45.0%
!!! TCACCTTTTCTTCTGGCTCT+TGG + Chr4:15034574-15034593 None:intergenic 45.0%
!!! AAATTTTTTTTTATAGTTTT+TGG - Chr4:15035786-15035805 MsG0480019146.01.T01:CDS 5.0%
!!! TTTATTTCTTTATTTATTAT+AGG - Chr4:15035134-15035153 MsG0480019146.01.T01:intron 5.0%
AGGTTCGAACCTAGGACCTT+AGG + Chr4:15034988-15035007 None:intergenic 50.0%
AGAGCAGTGGAAGGAACCCT+AGG - Chr4:15034599-15034618 MsG0480019146.01.T01:CDS 55.0%
!! ATCCATTTGGGTTGCGCGTG+CGG - Chr4:15035054-15035073 MsG0480019146.01.T01:intron 55.0%
TTCCGCACGCGCAACCCAAA+TGG + Chr4:15035059-15035078 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 15034557 15036689 15034557 ID=MsG0480019146.01;Name=MsG0480019146.01
Chr4 mRNA 15034557 15036689 15034557 ID=MsG0480019146.01.T01;Parent=MsG0480019146.01;Name=MsG0480019146.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|0.5|0.33|3|0|240
Chr4 exon 15036308 15036689 15036308 ID=MsG0480019146.01.T01:exon:4032;Parent=MsG0480019146.01.T01
Chr4 exon 15035746 15035941 15035746 ID=MsG0480019146.01.T01:exon:4031;Parent=MsG0480019146.01.T01
Chr4 exon 15034557 15034701 15034557 ID=MsG0480019146.01.T01:exon:4030;Parent=MsG0480019146.01.T01
Chr4 CDS 15036308 15036689 15036308 ID=MsG0480019146.01.T01:cds;Parent=MsG0480019146.01.T01
Chr4 CDS 15035746 15035941 15035746 ID=MsG0480019146.01.T01:cds;Parent=MsG0480019146.01.T01
Chr4 CDS 15034557 15034701 15034557 ID=MsG0480019146.01.T01:cds;Parent=MsG0480019146.01.T01
Gene Sequence

>MsG0480019146.01.T01

ATGGATGTGCAAAACCAAGAGCCAGAAGAAAAGGTGACAAAAAGAGCAGTGGAAGGAACCCTAGGAATTTTGAAAGCATGTTTAGAATCAAAGACAGTGAAAAAAGTGGTTTACACTTCTAGTGCAGCAACGGTTTTGTTCAATGATAAGAATCTTGATGTGGTGGATGAAGATGTTTGGAGTGATATTGATATTTGTAAAAGTAGTAACCTTGTTGGATCTTCTTATTTGGTGTCTAAAATTATGACTGAAAAGAGTGTTTTGGAGTTTGGAAAAGTGAATGAATTGAAGGTTGTTAGTTTGGTTCTTCCTTTGGTTGTTGGTCCCTTTATTTGCCCTAATATACCTTCATCTGTTTATATAGCACTCGCCATGATCTTTGGAGACCAAGATAGATACAAGTATCTCACCAACTCATACATGGTGCACACAGATGATGCCACTCGTGCACTTATATTTCTGTTTGAGTGTGAAAATGTTAATGGAAGGTTTATTTGTTCCTCAGACAGAATATCATTTCATCAATTGTATGAATTGCTTTGTCAAAGATATCCAGGGTATACCATAACAATACCAAATTCAATGAAGACAAAAAATGGTGATAAAAAGTTTAGTGATCTATCATCAAAAAAGCTCCTGGATGCTGGGTTCAAATTTAAGTACAGCGTCAAAGATATGTATGATGGAGCCATACAATGCTGTGAAGAGAAGGGCATTCTTTAG

Protein sequence

>MsG0480019146.01.T01

MDVQNQEPEEKVTKRAVEGTLGILKACLESKTVKKVVYTSSAATVLFNDKNLDVVDEDVWSDIDICKSSNLVGSSYLVSKIMTEKSVLEFGKVNELKVVSLVLPLVVGPFICPNIPSSVYIALAMIFGDQDRYKYLTNSYMVHTDDATRALIFLFECENVNGRFICSSDRISFHQLYELLCQRYPGYTITIPNSMKTKNGDKKFSDLSSKKLLDAGFKFKYSVKDMYDGAIQCCEEKGIL*