AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048134.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048134.01.T02 MTR_3g467140 95.556 90 4 0 1 90 260 349 2.61e-59 184
MsG0080048134.01.T02 MTR_3g467140 95.556 90 4 0 1 90 393 482 2.58e-58 186
MsG0080048134.01.T02 MTR_3g467130 80.899 89 17 0 1 89 393 481 7.41e-48 158
MsG0080048134.01.T02 MTR_5g091760 42.353 85 46 1 1 85 396 477 2.90e-19 80.9
MsG0080048134.01.T02 MTR_5g092150 49.412 85 41 2 1 85 389 471 1.43e-18 79.0
MsG0080048134.01.T02 MTR_8g100135 41.667 84 47 1 1 84 395 476 1.09e-15 70.9
MsG0080048134.01.T02 MTR_8g089190 37.805 82 50 1 1 82 361 441 2.04e-15 70.1
MsG0080048134.01.T02 MTR_5g025610 40.000 85 48 1 1 85 382 463 2.71e-15 69.7
MsG0080048134.01.T02 MTR_8g072260 37.647 85 50 1 1 85 384 465 3.60e-13 63.5
MsG0080048134.01.T02 MTR_1g019410 44.444 81 42 1 1 81 388 465 4.89e-13 63.2
MsG0080048134.01.T02 MTR_4g086130 41.026 78 43 1 4 81 390 464 4.93e-13 63.2
MsG0080048134.01.T02 MTR_5g025610 44.262 61 31 1 1 61 382 439 8.69e-12 59.7
MsG0080048134.01.T02 MTR_1g037580 41.463 82 45 1 1 82 395 473 4.30e-11 57.8
MsG0080048134.01.T02 MTR_4g086040 39.241 79 44 2 4 81 393 468 6.34e-11 57.0
MsG0080048134.01.T02 MTR_0045s0060 34.568 81 50 1 1 81 396 473 6.60e-11 57.0
MsG0080048134.01.T02 MTR_0045s0060 34.568 81 50 1 1 81 314 391 6.64e-11 57.0
MsG0080048134.01.T01 MTR_3g467140 95.172 145 7 0 1 145 205 349 1.35e-102 297
MsG0080048134.01.T01 MTR_3g467140 95.172 145 7 0 1 145 338 482 2.46e-101 298
MsG0080048134.01.T01 MTR_3g467130 81.944 144 26 0 1 144 338 481 2.02e-86 260
MsG0080048134.01.T01 MTR_5g091760 47.857 140 70 1 1 140 341 477 4.34e-45 153
MsG0080048134.01.T01 MTR_5g092150 51.429 140 66 2 1 140 334 471 1.64e-43 149
MsG0080048134.01.T01 MTR_8g100135 45.000 140 75 1 1 140 340 477 1.48e-39 139
MsG0080048134.01.T01 MTR_8g089190 41.606 137 79 1 1 137 306 441 7.33e-35 125
MsG0080048134.01.T01 MTR_5g025610 40.000 140 81 1 1 140 327 463 1.37e-27 106
MsG0080048134.01.T01 MTR_8g072260 39.416 137 80 1 1 137 329 462 3.17e-25 99.8
MsG0080048134.01.T01 MTR_1g019410 40.441 136 78 1 1 136 333 465 4.33e-25 99.8
MsG0080048134.01.T01 MTR_5g025610 42.241 116 64 1 1 116 327 439 2.83e-24 97.1
MsG0080048134.01.T01 MTR_4g086130 38.235 136 81 1 1 136 332 464 4.76e-24 96.7
MsG0080048134.01.T01 MTR_4g086040 38.686 137 80 2 1 136 335 468 2.78e-23 94.4
MsG0080048134.01.T01 MTR_1g037580 40.146 137 79 1 1 137 340 473 4.09e-23 94.0
MsG0080048134.01.T01 MTR_8g072260 44.340 106 56 1 1 106 329 431 8.79e-22 90.1
MsG0080048134.01.T01 MTR_0045s0060 34.559 136 86 1 1 136 259 391 1.16e-21 89.7
MsG0080048134.01.T01 MTR_0045s0060 34.559 136 86 1 1 136 341 473 2.67e-21 89.0
MsG0080048134.01.T01 MTR_5g014250 33.577 137 89 1 1 137 353 487 2.98e-21 89.0
MsG0080048134.01.T01 MTR_8g076940 33.600 125 80 1 1 125 348 469 6.24e-21 87.8
MsG0080048134.01.T01 MTR_5g014240 35.036 137 87 1 1 137 352 486 4.06e-20 85.5
MsG0080048134.01.T01 MTR_2g031920 32.867 143 94 1 1 143 350 490 2.47e-19 83.6
MsG0080048134.01.T01 MTR_0045s0070 33.824 136 87 1 1 136 341 473 8.69e-19 82.0
MsG0080048134.01.T01 MTR_6g034940 35.537 121 75 1 1 121 345 462 6.13e-18 79.3
MsG0080048134.01.T01 MTR_1g032950 33.333 129 84 1 1 129 337 463 6.60e-18 79.3
MsG0080048134.01.T01 MTR_2g031930 33.099 142 91 2 1 142 352 489 9.15e-18 79.0
MsG0080048134.01.T01 MTR_5g020020 31.757 148 92 3 1 143 340 483 5.06e-17 77.0
MsG0080048134.01.T01 MTR_5g020020 31.757 148 92 3 1 143 266 409 5.55e-17 76.6
MsG0080048134.01.T01 MTR_5g010750 28.571 140 99 1 1 140 332 470 6.58e-17 76.6
MsG0080048134.01.T01 MTR_5g082520 31.757 148 94 4 1 142 326 472 1.32e-16 75.5
MsG0080048134.01.T01 MTR_8g089800 32.308 130 86 1 1 130 352 479 2.84e-16 74.7
MsG0080048134.01.T01 MTR_8g077810 30.070 143 94 2 1 138 337 478 6.99e-16 73.6
MsG0080048134.01.T01 MTR_8g016180 34.146 123 77 2 3 125 339 457 7.17e-16 73.6
MsG0080048134.01.T01 MTR_4g005230 35.115 131 78 3 1 129 348 473 7.60e-16 73.6
MsG0080048134.01.T01 MTR_5g010750 32.710 107 72 0 1 107 332 438 9.72e-16 73.2
MsG0080048134.01.T01 MTR_5g021220 32.847 137 90 1 3 139 354 488 1.07e-15 73.2
MsG0080048134.01.T01 MTR_8g012970 35.606 132 78 3 1 130 350 476 1.57e-15 72.8
MsG0080048134.01.T01 MTR_2g031930 35.514 107 66 1 1 107 348 451 2.99e-15 71.6
MsG0080048134.01.T01 MTR_3g112120 28.571 126 87 1 1 126 347 469 3.88e-15 71.6
MsG0080048134.01.T01 MTR_0045s0070 35.849 106 65 1 1 106 341 443 3.83e-14 68.6
MsG0080048134.01.T01 MTR_8g076510 31.250 112 77 0 1 112 341 452 2.98e-13 66.2
MsG0080048134.01.T01 MTR_7g079440 31.250 112 73 1 1 108 503 614 5.42e-12 62.4
MsG0080048134.01.T01 MTR_8g076940 37.662 77 48 0 1 77 348 424 6.28e-12 62.4
MsG0080048134.01.T01 MTR_5g025610 45.588 68 37 0 1 68 327 394 1.82e-11 60.8
MsG0080048134.01.T01 MTR_8g072260 45.588 68 37 0 1 68 329 396 6.93e-11 59.3
MsG0080048134.01.T01 MTR_8g008530 32.673 101 65 2 1 98 376 476 7.69e-11 59.3
MsG0080048134.01.T01 MTR_7g033040 32.456 114 71 2 1 112 334 443 8.32e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048134.01.T02 AT2G42850 41.379 87 48 1 1 87 402 485 2.16e-20 84.0
MsG0080048134.01.T02 AT5G36130 44.828 87 45 2 1 86 56 140 7.65e-18 73.2
MsG0080048134.01.T02 AT2G29090 42.857 84 45 1 1 84 306 386 1.47e-17 75.9
MsG0080048134.01.T02 AT2G29090 42.857 84 45 1 1 84 401 481 2.22e-17 75.5
MsG0080048134.01.T02 AT2G29090 42.857 84 45 1 1 84 401 481 2.22e-17 75.5
MsG0080048134.01.T02 AT5G36110 42.529 87 47 2 1 86 393 477 5.23e-15 68.9
MsG0080048134.01.T02 AT5G45340 38.824 85 49 1 1 85 381 462 1.03e-14 68.2
MsG0080048134.01.T02 AT3G19270 43.038 79 40 2 1 78 385 459 2.12e-13 64.3
MsG0080048134.01.T02 AT4G19230 42.308 78 42 1 1 78 381 455 3.67e-13 63.5
MsG0080048134.01.T02 AT5G48000 36.585 82 51 1 1 82 434 514 2.57e-11 58.5
MsG0080048134.01.T02 AT5G48000 36.585 82 51 1 1 82 393 473 2.93e-11 58.2
MsG0080048134.01.T02 AT5G48000 36.585 82 51 1 1 82 393 473 2.93e-11 58.2
MsG0080048134.01.T02 AT5G48000 36.585 82 51 1 1 82 393 473 2.93e-11 58.2
MsG0080048134.01.T02 AT5G48000 36.585 82 51 1 1 82 393 473 2.93e-11 58.2
MsG0080048134.01.T02 AT5G48000 36.585 82 51 1 1 82 393 473 2.93e-11 58.2
MsG0080048134.01.T02 AT5G48000 36.585 82 51 1 1 82 393 473 2.93e-11 58.2
MsG0080048134.01.T01 AT2G42850 46.479 142 73 1 1 142 347 485 2.40e-45 154
MsG0080048134.01.T01 AT5G36130 46.099 141 73 2 1 140 1 139 3.47e-42 137
MsG0080048134.01.T01 AT5G36110 45.070 142 75 2 1 141 338 477 4.82e-38 134
MsG0080048134.01.T01 AT2G29090 41.007 139 79 1 1 139 251 386 3.39e-30 112
MsG0080048134.01.T01 AT5G45340 41.304 138 78 1 1 138 326 460 8.36e-30 112
MsG0080048134.01.T01 AT2G29090 41.007 139 79 1 1 139 346 481 1.55e-29 112
MsG0080048134.01.T01 AT2G29090 41.007 139 79 1 1 139 346 481 1.55e-29 112
MsG0080048134.01.T01 AT4G19230 40.000 145 82 2 1 143 326 467 4.26e-27 105
MsG0080048134.01.T01 AT5G45340 46.226 106 54 1 1 106 326 428 4.78e-25 99.4
MsG0080048134.01.T01 AT3G19270 40.299 134 75 2 1 133 330 459 2.17e-24 97.8
MsG0080048134.01.T01 AT4G19230 44.348 115 61 1 1 115 326 437 4.72e-24 96.7
MsG0080048134.01.T01 AT3G19270 42.593 108 57 2 1 107 330 433 1.52e-20 86.7
MsG0080048134.01.T01 AT5G48000 35.971 139 84 3 1 137 338 473 4.62e-20 85.5
MsG0080048134.01.T01 AT5G48000 35.971 139 84 3 1 137 338 473 4.62e-20 85.5
MsG0080048134.01.T01 AT5G48000 35.971 139 84 3 1 137 338 473 4.62e-20 85.5
MsG0080048134.01.T01 AT5G48000 35.971 139 84 3 1 137 338 473 4.62e-20 85.5
MsG0080048134.01.T01 AT5G48000 35.971 139 84 3 1 137 338 473 4.62e-20 85.5
MsG0080048134.01.T01 AT5G48000 35.971 139 84 3 1 137 338 473 4.62e-20 85.5
MsG0080048134.01.T01 AT5G48000 35.971 139 84 3 1 137 379 514 5.33e-20 85.5
MsG0080048134.01.T01 AT1G05160 33.577 137 90 1 1 137 352 487 4.43e-19 82.8
MsG0080048134.01.T01 AT1G05160 33.577 137 90 1 1 137 352 487 4.43e-19 82.8
MsG0080048134.01.T01 AT1G78490 33.813 139 87 3 1 137 338 473 2.49e-18 80.5
MsG0080048134.01.T01 AT3G44970 33.813 139 87 3 1 137 338 473 5.17e-18 79.7
MsG0080048134.01.T01 AT4G36380 30.282 142 92 3 1 141 374 509 3.82e-17 77.4
MsG0080048134.01.T01 AT2G32440 36.752 117 72 1 1 117 350 464 7.35e-17 76.6
MsG0080048134.01.T01 AT2G32440 36.752 117 72 1 1 117 350 464 7.35e-17 76.6
MsG0080048134.01.T01 AT3G13730 34.058 138 87 2 1 138 356 489 7.95e-17 76.3
MsG0080048134.01.T01 AT1G12740 28.369 141 98 3 1 140 338 476 1.68e-16 75.5
MsG0080048134.01.T01 AT1G12740 28.369 141 98 3 1 140 332 470 1.80e-16 75.5
MsG0080048134.01.T01 AT1G19630 29.600 125 81 3 1 123 338 457 2.60e-15 72.0
MsG0080048134.01.T01 AT3G13730 36.449 107 66 1 1 107 356 460 3.25e-15 71.6
MsG0080048134.01.T01 AT1G55940 32.540 126 84 1 1 126 354 478 1.07e-14 70.1
MsG0080048134.01.T01 AT1G12740 27.211 147 98 4 1 140 332 476 3.25e-14 68.9
MsG0080048134.01.T01 AT5G05690 30.597 134 88 2 1 129 329 462 3.64e-14 68.6
MsG0080048134.01.T01 AT1G19630 30.769 117 74 3 1 115 338 449 1.03e-13 67.4
MsG0080048134.01.T01 AT3G50660 29.252 147 93 2 1 137 364 509 1.17e-13 67.4
MsG0080048134.01.T01 AT5G05690 30.597 134 88 2 1 129 210 343 1.84e-13 66.6
MsG0080048134.01.T01 AT1G55940 34.579 107 70 0 1 107 354 460 1.86e-13 66.6
MsG0080048134.01.T01 AT5G38970 28.777 139 97 2 1 139 328 464 3.76e-13 65.9
MsG0080048134.01.T01 AT5G38970 28.777 139 97 2 1 139 247 383 4.02e-13 65.5
MsG0080048134.01.T01 AT5G38970 28.777 139 97 2 1 139 247 383 4.02e-13 65.5
MsG0080048134.01.T01 AT2G42850 59.524 42 17 0 1 42 347 388 7.60e-12 62.0
MsG0080048134.01.T01 AT1G73340 30.137 146 94 3 1 140 337 480 1.85e-11 60.8
MsG0080048134.01.T01 AT3G30180 28.058 139 98 2 1 139 328 464 2.83e-11 60.5
MsG0080048134.01.T01 AT4G15300 30.345 145 97 4 1 144 345 486 4.25e-11 60.1
MsG0080048134.01.T01 AT4G15300 30.345 145 97 4 1 144 333 474 4.35e-11 60.1
MsG0080048134.01.T01 AT4G15300 30.345 145 97 4 1 144 323 464 5.00e-11 59.7

Find 42 sgRNAs with CRISPR-Local

Find 53 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTTCTTGTTTAGGTATAT+TGG 0.193849 contig216end:-34765 MsG0080048134.01.T01:intron
CTCCCTTGTTTGGTGGATTT+AGG 0.221627 contig216end:-34928 MsG0080048134.01.T01:CDS
CTTCCTTAGGTCTACAAGTT+AGG 0.275168 contig216end:-34489 MsG0080048134.01.T01:CDS
CAAGGATATGACATCCAAAA+AGG 0.281190 contig216end:-34881 MsG0080048134.01.T01:CDS
GTTTCTTGTTTAGGTATATT+GGG 0.287130 contig216end:-34764 MsG0080048134.01.T01:intron
CCCTTTACTTACCTTCCATT+TGG 0.318147 contig216end:-34649 MsG0080048134.01.T01:CDS
CGAGATGGTTCAAACTTGTA+TGG 0.363230 contig216end:+34700 None:intergenic
AGGATGATCCCTCCCTTGTT+TGG 0.399326 contig216end:-34938 MsG0080048134.01.T01:CDS
ACTTACCTTCCATTTGGTGC+AGG 0.402034 contig216end:-34643 MsG0080048134.01.T01:CDS
AAAATTGTGAATGGTAGTTA+AGG 0.403773 contig216end:+34579 None:intergenic
TGTAGACCTAAGGAAGGATA+TGG 0.415745 contig216end:+34496 None:intergenic
AAGGGTGGGATTGGCTTGGT+TGG 0.421963 contig216end:+34667 None:intergenic
TAAGAAGATATATTACATCT+TGG 0.430086 contig216end:+34460 None:intergenic
ATGATCCCTCCCTTGTTTGG+TGG 0.435807 contig216end:-34935 MsG0080048134.01.T01:CDS
GCATAGGAAATGAGTTTGCC+AGG 0.442163 contig216end:-34609 MsG0080048134.01.T01:CDS
AGGTAAGTAAAGGGTGGGAT+TGG 0.449267 contig216end:+34658 None:intergenic
TGACGAGTAATAGTTTCCTC+TGG 0.457822 contig216end:+34526 None:intergenic
TTATGAAGCCCTGCACCAAA+TGG 0.466953 contig216end:+34634 None:intergenic
CCTATGCCATATCCTTCCTT+AGG 0.469443 contig216end:-34502 MsG0080048134.01.T01:CDS
CTTACCTTCCATTTGGTGCA+GGG 0.476598 contig216end:-34642 MsG0080048134.01.T01:CDS
AGTAAAGGGTGGGATTGGCT+TGG 0.491689 contig216end:+34663 None:intergenic
AATCCTAACTTGTAGACCTA+AGG 0.510863 contig216end:+34486 None:intergenic
TTTCCTAAATCCACCAAACA+AGG 0.523989 contig216end:+34925 None:intergenic
CATCTTCACAAAATTGTGAA+TGG 0.527167 contig216end:+34570 None:intergenic
ACCAAATGGAAGGTAAGTAA+AGG 0.529962 contig216end:+34648 None:intergenic
CCAAATGGAAGGTAAGTAAA+GGG 0.546848 contig216end:+34649 None:intergenic
TAGGTATATTGGGCATCAAG+TGG 0.569167 contig216end:-34754 MsG0080048134.01.T01:CDS
CTAACTTGTAGACCTAAGGA+AGG 0.588301 contig216end:+34490 None:intergenic
CCTAAGGAAGGATATGGCAT+AGG 0.589890 contig216end:+34502 None:intergenic
GCAGGGCTTCATAATTGCAT+AGG 0.597715 contig216end:-34625 MsG0080048134.01.T01:CDS
GAAGCCCTGCACCAAATGGA+AGG 0.601532 contig216end:+34638 None:intergenic
TAAATCCACCAAACAAGGGA+GGG 0.610091 contig216end:+34930 None:intergenic
CATAGGAAATGAGTTTGCCA+GGG 0.611766 contig216end:-34608 MsG0080048134.01.T01:CDS
CTTAAAGATACTAGCTACCA+AGG 0.614804 contig216end:-34899 MsG0080048134.01.T01:CDS
ATGGAAGGTAAGTAAAGGGT+GGG 0.637679 contig216end:+34653 None:intergenic
AATGGAAGGTAAGTAAAGGG+TGG 0.648522 contig216end:+34652 None:intergenic
GGTAGTTAAGGTCTCAACCC+TGG 0.648936 contig216end:+34591 None:intergenic
TACAAAAGATGAAATACACA+TGG 0.649342 contig216end:-34982 None:intergenic
TTCCTAAATCCACCAAACAA+GGG 0.651412 contig216end:+34926 None:intergenic
CTAAATCCACCAAACAAGGG+AGG 0.656656 contig216end:+34929 None:intergenic
ATGGTCTCAATTGAATCCAG+AGG 0.672228 contig216end:-34542 MsG0080048134.01.T01:CDS
GAGTTGCTCAAGAATTGATG+AGG 0.701801 contig216end:-34958 MsG0080048134.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATACAAAATTAAAACTA+TGG + contig216end:34597-34616 None:intergenic 10.0%
!! TAAGAAGATATATTACATCT+TGG + contig216end:34976-34995 None:intergenic 20.0%
!!! ATCAGTGACATATATATTTT+TGG - contig216end:34625-34644 MsG0080048134.01.T01:CDS 20.0%
!!! TCAGTGACATATATATTTTT+GGG - contig216end:34626-34645 MsG0080048134.01.T01:CDS 20.0%
! AAAATTGTGAATGGTAGTTA+AGG + contig216end:34857-34876 None:intergenic 25.0%
!! GTTTCTTGTTTAGGTATATT+GGG - contig216end:34669-34688 MsG0080048134.01.T01:CDS 25.0%
AAGGATATGACATCCAAAAA+GGG - contig216end:34553-34572 MsG0080048134.01.T01:CDS 30.0%
CATCTTCACAAAATTGTGAA+TGG + contig216end:34866-34885 None:intergenic 30.0%
GGCTAACAATAATGTCAAAT+TGG - contig216end:34647-34666 MsG0080048134.01.T01:CDS 30.0%
! ATTTTGTGAAGATGTGTGAA+TGG - contig216end:34872-34891 MsG0080048134.01.T01:intron 30.0%
! GGTTTCTTGTTTAGGTATAT+TGG - contig216end:34668-34687 MsG0080048134.01.T01:CDS 30.0%
! GTCAAATTGGTTTCTTGTTT+AGG - contig216end:34660-34679 MsG0080048134.01.T01:CDS 30.0%
ACCAAATGGAAGGTAAGTAA+AGG + contig216end:34788-34807 None:intergenic 35.0%
CAAGGATATGACATCCAAAA+AGG - contig216end:34552-34571 MsG0080048134.01.T01:CDS 35.0%
CCAAATGGAAGGTAAGTAAA+GGG + contig216end:34787-34806 None:intergenic 35.0%
CTTAAAGATACTAGCTACCA+AGG - contig216end:34534-34553 MsG0080048134.01.T01:CDS 35.0%
TTCCTAAATCCACCAAACAA+GGG + contig216end:34510-34529 None:intergenic 35.0%
TTTCCTAAATCCACCAAACA+AGG + contig216end:34511-34530 None:intergenic 35.0%
! AATCCTAACTTGTAGACCTA+AGG + contig216end:34950-34969 None:intergenic 35.0%
! CTTTTTGGATGTCATATCCT+TGG + contig216end:34554-34573 None:intergenic 35.0%
! GTTGGATTTTCAAAACGAGA+TGG + contig216end:34751-34770 None:intergenic 35.0%
AATGGAAGGTAAGTAAAGGG+TGG + contig216end:34784-34803 None:intergenic 40.0%
ATGGAAGGTAAGTAAAGGGT+GGG + contig216end:34783-34802 None:intergenic 40.0%
ATGGTCTCAATTGAATCCAG+AGG - contig216end:34891-34910 MsG0080048134.01.T01:CDS 40.0%
CATAGGAAATGAGTTTGCCA+GGG - contig216end:34825-34844 MsG0080048134.01.T01:intron 40.0%
CCCTTTACTTACCTTCCATT+TGG - contig216end:34784-34803 MsG0080048134.01.T01:intron 40.0%
CGAGATGGTTCAAACTTGTA+TGG + contig216end:34736-34755 None:intergenic 40.0%
CTTCCTTAGGTCTACAAGTT+AGG - contig216end:34944-34963 MsG0080048134.01.T01:CDS 40.0%
GAGTTGCTCAAGAATTGATG+AGG - contig216end:34475-34494 MsG0080048134.01.T01:CDS 40.0%
GATATGACATCCAAAAAGGG+TGG - contig216end:34556-34575 MsG0080048134.01.T01:CDS 40.0%
TAAATCCACCAAACAAGGGA+GGG + contig216end:34506-34525 None:intergenic 40.0%
TAGGTATATTGGGCATCAAG+TGG - contig216end:34679-34698 MsG0080048134.01.T01:CDS 40.0%
TGACGAGTAATAGTTTCCTC+TGG + contig216end:34910-34929 None:intergenic 40.0%
TGTAGACCTAAGGAAGGATA+TGG + contig216end:34940-34959 None:intergenic 40.0%
! CTAACTTGTAGACCTAAGGA+AGG + contig216end:34946-34965 None:intergenic 40.0%
AGGTAAGTAAAGGGTGGGAT+TGG + contig216end:34778-34797 None:intergenic 45.0%
CCTAAGGAAGGATATGGCAT+AGG + contig216end:34934-34953 None:intergenic 45.0%
CCTATGCCATATCCTTCCTT+AGG - contig216end:34931-34950 MsG0080048134.01.T01:CDS 45.0%
CTAAATCCACCAAACAAGGG+AGG + contig216end:34507-34526 None:intergenic 45.0%
GCAGGGCTTCATAATTGCAT+AGG - contig216end:34808-34827 MsG0080048134.01.T01:intron 45.0%
GCATAGGAAATGAGTTTGCC+AGG - contig216end:34824-34843 MsG0080048134.01.T01:intron 45.0%
TTATGAAGCCCTGCACCAAA+TGG + contig216end:34802-34821 None:intergenic 45.0%
! ATATCACCTGCCACCCTTTT+TGG + contig216end:34569-34588 None:intergenic 45.0%
!! ACTTACCTTCCATTTGGTGC+AGG - contig216end:34790-34809 MsG0080048134.01.T01:intron 45.0%
!! CTCCCTTGTTTGGTGGATTT+AGG - contig216end:34505-34524 MsG0080048134.01.T01:CDS 45.0%
!! CTTACCTTCCATTTGGTGCA+GGG - contig216end:34791-34810 MsG0080048134.01.T01:intron 45.0%
AGGATGATCCCTCCCTTGTT+TGG - contig216end:34495-34514 MsG0080048134.01.T01:CDS 50.0%
GGTAGTTAAGGTCTCAACCC+TGG + contig216end:34845-34864 None:intergenic 50.0%
TGACATCCAAAAAGGGTGGC+AGG - contig216end:34560-34579 MsG0080048134.01.T01:CDS 50.0%
! ATGATCCCTCCCTTGTTTGG+TGG - contig216end:34498-34517 MsG0080048134.01.T01:CDS 50.0%
!! AGTAAAGGGTGGGATTGGCT+TGG + contig216end:34773-34792 None:intergenic 50.0%
GAAGCCCTGCACCAAATGGA+AGG + contig216end:34798-34817 None:intergenic 55.0%
!! AAGGGTGGGATTGGCTTGGT+TGG + contig216end:34769-34788 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
contig216end gene 34459 34996 34459 ID=MsG0080048134.01;Name=MsG0080048134.01
contig216end mRNA 34459 34996 34459 ID=MsG0080048134.01.T01;Parent=MsG0080048134.01;Name=MsG0080048134.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|0.5|2|0|145
contig216end exon 34459 34773 34459 ID=MsG0080048134.01.T01:exon:6187;Parent=MsG0080048134.01.T01
contig216end exon 34874 34996 34874 ID=MsG0080048134.01.T01:exon:6186;Parent=MsG0080048134.01.T01
contig216end CDS 34874 34996 34874 ID=MsG0080048134.01.T01:cds;Parent=MsG0080048134.01.T01
contig216end CDS 34459 34773 34459 ID=MsG0080048134.01.T01:cds;Parent=MsG0080048134.01.T01
contig216end mRNA 34459 34731 34459 ID=MsG0080048134.01.T02;Parent=MsG0080048134.01;Name=MsG0080048134.01.T02;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|0|1|0|90
contig216end exon 34459 34731 34459 ID=MsG0080048134.01.T02:exon:6188;Parent=MsG0080048134.01.T02
contig216end CDS 34459 34731 34459 ID=MsG0080048134.01.T02:cds;Parent=MsG0080048134.01.T02
Gene Sequence

>MsG0080048134.01.T02

TTTGAGAATCCATACAAGTTTGAACCATCTCGTTTTGAAAATCCAACCAAGCCAATCCCACCCTTTACTTACCTTCCATTTGGTGCAGGGCTTCATAATTGCATAGGAAATGAGTTTGCCAGGGTTGAGACCTTAACTACCATTCACAATTTTGTGAAGATGTGTGAATGGTCTCAATTGAATCCAGAGGAAACTATTACTCGTCAACCTATGCCATATCCTTCCTTAGGTCTACAAGTTAGGATTAAACCAAGATGTAATATATCTTCTTAA

>MsG0080048134.01.T01

ATGAAATACACATGGAGAGTTGCTCAAGAATTGATGAGGATGATCCCTCCCTTGTTTGGTGGATTTAGGAAAGCACTTAAAGATACTAGCTACCAAGGATATGACATCCAAAAAGGGTGGCAGGTATATTGGGCATCAAGTGGAACACATGAGAACAAAGATATATTTGAGAATCCATACAAGTTTGAACCATCTCGTTTTGAAAATCCAACCAAGCCAATCCCACCCTTTACTTACCTTCCATTTGGTGCAGGGCTTCATAATTGCATAGGAAATGAGTTTGCCAGGGTTGAGACCTTAACTACCATTCACAATTTTGTGAAGATGTGTGAATGGTCTCAATTGAATCCAGAGGAAACTATTACTCGTCAACCTATGCCATATCCTTCCTTAGGTCTACAAGTTAGGATTAAACCAAGATGTAATATATCTTCTTAA

Protein sequence

>MsG0080048134.01.T02

FENPYKFEPSRFENPTKPIPPFTYLPFGAGLHNCIGNEFARVETLTTIHNFVKMCEWSQLNPEETITRQPMPYPSLGLQVRIKPRCNISS*

>MsG0080048134.01.T01

MKYTWRVAQELMRMIPPLFGGFRKALKDTSYQGYDIQKGWQVYWASSGTHENKDIFENPYKFEPSRFENPTKPIPPFTYLPFGAGLHNCIGNEFARVETLTTIHNFVKMCEWSQLNPEETITRQPMPYPSLGLQVRIKPRCNISS*