AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043584.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043584.01.T01 MTR_6g049280 86.232 138 19 0 49 186 17 154 8.58e-75 221
MsG0880043584.01.T01 MTR_6g049320 85.000 140 21 0 47 186 15 154 1.25e-73 219
MsG0880043584.01.T01 MTR_6g049280 95.902 122 5 0 65 186 3 124 1.26e-73 218
MsG0880043584.01.T01 MTR_6g049320 95.902 122 5 0 65 186 3 124 1.50e-72 215
MsG0880043584.01.T01 MTR_6g051690 60.938 128 43 3 64 186 2 127 1.87e-38 129
MsG0880043584.01.T01 MTR_1g099800 57.143 133 45 2 65 185 3 135 2.42e-36 123
MsG0880043584.01.T01 MTR_7g451200 56.604 106 44 1 65 170 3 106 2.53e-36 122
MsG0880043584.01.T01 MTR_1173s0010 56.190 105 44 1 65 169 3 105 2.96e-35 120
MsG0880043584.01.T01 MTR_1g099810 52.941 136 49 2 65 185 3 138 3.43e-35 120
MsG0880043584.01.T01 MTR_7g451210 56.250 112 44 2 65 173 3 112 1.24e-34 118
MsG0880043584.01.T01 MTR_6g049260 59.048 105 41 2 65 169 3 105 3.64e-34 117
MsG0880043584.01.T01 MTR_3g434890 56.190 105 44 1 65 169 3 105 4.57e-34 117
MsG0880043584.01.T01 MTR_6g051680 76.812 69 16 0 64 132 2 70 1.69e-33 115
MsG0880043584.01.T01 MTR_3g434960 55.238 105 45 1 65 169 3 105 1.80e-33 115
MsG0880043584.01.T01 MTR_1g099815 54.887 133 44 3 65 185 3 131 3.61e-33 115
MsG0880043584.01.T01 MTR_8g098915 50.388 129 53 3 65 186 3 127 6.25e-33 114
MsG0880043584.01.T01 MTR_1g099640 49.624 133 53 3 64 186 2 130 2.70e-32 113
MsG0880043584.01.T01 MTR_3g435000 53.465 101 45 1 68 168 10 108 2.24e-31 110
MsG0880043584.01.T01 MTR_1g102240 53.383 133 46 4 65 185 3 131 2.61e-31 110
MsG0880043584.01.T01 MTR_0795s0020 53.030 132 45 3 65 186 3 127 1.18e-28 103
MsG0880043584.01.T01 MTR_1g099810 52.101 119 42 2 82 185 1 119 4.94e-27 99.4
MsG0880043584.01.T01 MTR_8g098915 47.321 112 48 3 82 186 1 108 4.13e-23 89.0
MsG0880043584.01.T01 MTR_7g079110 62.121 66 25 0 65 130 3 68 1.07e-22 89.7
MsG0880043584.01.T01 MTR_3g434920 53.750 80 35 1 90 169 2 79 7.56e-22 85.1
MsG0880043584.01.T01 MTR_1g099810 46.602 103 40 2 98 185 1 103 1.18e-16 72.0
MsG0880043584.01.T01 MTR_1g099640 44.444 99 41 3 98 186 1 95 7.41e-15 67.4
MsG0880043584.01.T01 MTR_8g028615 66.667 66 22 0 65 130 3 68 1.25e-13 65.5
MsG0880043584.01.T01 MTR_3g082250 43.210 81 42 4 65 141 5 85 8.02e-13 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043584.01.T01 AT1G01490 66.667 69 22 1 65 132 3 71 4.99e-24 93.6
MsG0880043584.01.T01 AT1G01490 66.667 69 22 1 65 132 3 71 4.99e-24 93.6
MsG0880043584.01.T01 AT1G01490 66.667 69 22 1 65 132 30 98 7.20e-24 93.6
MsG0880043584.01.T01 AT5G52740 58.209 67 26 1 66 132 4 68 1.37e-18 77.8
MsG0880043584.01.T01 AT5G52760 43.269 104 49 4 67 167 7 103 5.62e-16 71.2
MsG0880043584.01.T01 AT5G52750 44.615 65 36 0 65 129 5 69 8.42e-12 60.5

Find 43 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCAATATTCTTCTGTTTC+AGG 0.138883 8:-27292432 MsG0880043584.01.T01:CDS
AAGACAGTCTCTGGCCTTTC+AGG 0.146342 8:-27293048 MsG0880043584.01.T01:intron
AGGCTTCAAGTAATTGAATT+TGG 0.236285 8:+27292490 None:intergenic
GACAAGAAATTAACCTTAAC+TGG 0.272704 8:-27292636 MsG0880043584.01.T01:CDS
TTGTTGCATGTAATAATAAT+GGG 0.354627 8:+27292464 None:intergenic
ATTTGGTCCTTCTTCACATC+AGG 0.375669 8:+27292507 None:intergenic
AGTCTTTGACACGTCACCTC+TGG 0.402519 8:+27294545 None:intergenic
TGGATCTGTGTCTCCAGTTA+AGG 0.422934 8:+27292623 None:intergenic
GTTGTTGCATGTAATAATAA+TGG 0.435595 8:+27292463 None:intergenic
AGTTTACTTACTACATGTAC+TGG 0.438622 8:+27292603 None:intergenic
GTTACAGAAACTAGTGTTGA+AGG 0.448129 8:-27293109 MsG0880043584.01.T01:intron
TCAAATCGCAACGGCGAGCT+AGG 0.469920 8:-27294581 MsG0880043584.01.T01:CDS
TAGTAAGTAAACTAAGGAAA+TGG 0.475788 8:-27292593 MsG0880043584.01.T01:CDS
ATGCTGAAATAGTTTCTGTT+GGG 0.476513 8:-27292566 MsG0880043584.01.T01:CDS
AGCAAGGGACTGGCAGAGGC+AGG 0.484871 8:-27294634 MsG0880043584.01.T01:CDS
GAGTAGCAAGGGACTGGCAG+AGG 0.487286 8:-27294638 MsG0880043584.01.T01:CDS
AAAGCTATGAAGACAGTCTC+TGG 0.487579 8:-27293057 MsG0880043584.01.T01:CDS
CGCCACTGCGAGTAGGATGC+GGG 0.487969 8:+27294704 None:intergenic
CATGCTGAAATAGTTTCTGT+TGG 0.500770 8:-27292567 MsG0880043584.01.T01:CDS
ATCTAAGCCTGATGTGAAGA+AGG 0.503469 8:-27292514 MsG0880043584.01.T01:CDS
GTCTTTGACACGTCACCTCT+GGG 0.513497 8:+27294546 None:intergenic
TCGCCACTGCGAGTAGGATG+CGG 0.513898 8:+27294703 None:intergenic
TACATGTAGTAAGTAAACTA+AGG 0.515410 8:-27292599 MsG0880043584.01.T01:CDS
CAGCATATGACACATCCAAC+AGG 0.518380 8:+27292396 None:intergenic
ATATTCTTCTGTTTCAGGAG+TGG 0.535288 8:-27292427 MsG0880043584.01.T01:CDS
TCACCTCTGGGAGTTGAAAA+CGG 0.555307 8:+27294558 None:intergenic
AGGTGGATTTACACGATGAC+AGG 0.555564 8:-27293089 MsG0880043584.01.T01:CDS
CATGTAATAATAATGGGGAT+AGG 0.566193 8:+27292470 None:intergenic
TTGTGTTCGCCACTGCGAGT+AGG 0.572414 8:+27294697 None:intergenic
CTCACAGTGGCGAGTAGCAA+GGG 0.581550 8:-27294649 MsG0880043584.01.T01:CDS
TGTTCAATTGTGCAAACTGA+GGG 0.581796 8:-27292263 MsG0880043584.01.T01:three_prime_UTR
GACTGGCAGAGGCAGGAGCA+TGG 0.583556 8:-27294627 MsG0880043584.01.T01:CDS
ACTCACAGTGGCGAGTAGCA+AGG 0.600846 8:-27294650 MsG0880043584.01.T01:CDS
AGTGGCGAGTAGCAAGGGAC+TGG 0.605152 8:-27294644 MsG0880043584.01.T01:CDS
GAAGAATATTGAATATATTG+CGG 0.607825 8:+27292441 None:intergenic
GACATGTGACATTACCTGAA+AGG 0.614101 8:+27293034 None:intergenic
GTGTTCAATTGTGCAAACTG+AGG 0.631290 8:-27292264 MsG0880043584.01.T01:three_prime_UTR
GGAGTGGAACAAGATCCTGT+TGG 0.642310 8:-27292411 MsG0880043584.01.T01:CDS
TGCCCGCATCCTACTCGCAG+TGG 0.649719 8:-27294706 MsG0880043584.01.T01:CDS
TGTTGCATGTAATAATAATG+GGG 0.649795 8:+27292465 None:intergenic
ACAGAAACTAGTGTTGAAGG+TGG 0.658613 8:-27293106 MsG0880043584.01.T01:intron
GCGAGCAATTCAAATCGCAA+CGG 0.663397 8:-27294590 MsG0880043584.01.T01:CDS
ACGAGCACATCAACTCACAG+TGG 0.763741 8:-27294662 MsG0880043584.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTAAATTTAAAAA+TGG + Chr8:27294172-27294191 None:intergenic 0.0%
!!! TGTATTTTCATATTATTTAT+TGG - Chr8:27294620-27294639 MsG0880043584.01.T01:CDS 10.0%
!! TTAATACTTAGAATGATATT+TGG - Chr8:27293287-27293306 MsG0880043584.01.T01:intron 15.0%
!!! AAAAGCTTTATTGAAATTAA+TGG - Chr8:27293755-27293774 MsG0880043584.01.T01:intron 15.0%
!!! AATTTTACCAAAAAACTTAA+AGG + Chr8:27294262-27294281 None:intergenic 15.0%
!!! TATTTTAATCATGCATTATT+TGG - Chr8:27294054-27294073 MsG0880043584.01.T01:intron 15.0%
!!! TCTTTTGATCTATAAATATA+TGG - Chr8:27292782-27292801 MsG0880043584.01.T01:intron 15.0%
!!! TTTTTATATAGTTTTTTGAG+TGG - Chr8:27294658-27294677 MsG0880043584.01.T01:CDS 15.0%
!! AAAATTTAAAAGAAGAGCTA+GGG + Chr8:27293706-27293725 None:intergenic 20.0%
!! AATCTTTAGATTCAAAGAAA+AGG + Chr8:27293825-27293844 None:intergenic 20.0%
!! AGGAAAGTTAATATTAAAAG+AGG + Chr8:27293805-27293824 None:intergenic 20.0%
!! GAAGAATATTGAATATATTG+CGG + Chr8:27294530-27294549 None:intergenic 20.0%
!! GATATAATACAAATTTGAAG+AGG + Chr8:27293405-27293424 None:intergenic 20.0%
!! GGAAAGTTAATATTAAAAGA+GGG + Chr8:27293804-27293823 None:intergenic 20.0%
!! TAAAATTTAAAAGAAGAGCT+AGG + Chr8:27293707-27293726 None:intergenic 20.0%
!! TAAATGATGTTCAAATTATC+AGG + Chr8:27294129-27294148 None:intergenic 20.0%
!! TATAACCTAATGATCATATA+TGG + Chr8:27293157-27293176 None:intergenic 20.0%
!! TCAAATTATCAGGTTAAAAA+GGG + Chr8:27294119-27294138 None:intergenic 20.0%
!! TTCAAATTATCAGGTTAAAA+AGG + Chr8:27294120-27294139 None:intergenic 20.0%
!! TTGTTGCATGTAATAATAAT+GGG + Chr8:27294507-27294526 None:intergenic 20.0%
!!! ATAAGGTTTTAAAACTTGTT+AGG + Chr8:27293207-27293226 None:intergenic 20.0%
!!! GTTTTTTGGTAAAATTGTAT+TGG - Chr8:27294266-27294285 MsG0880043584.01.T01:intron 20.0%
!!! TGTAATACCTTTAAGTTTTT+TGG - Chr8:27294252-27294271 MsG0880043584.01.T01:intron 20.0%
! AACCAACAATTCTGATTTAT+TGG - Chr8:27293726-27293745 MsG0880043584.01.T01:intron 25.0%
! AACTAAGATAACTTCATGAA+AGG + Chr8:27292542-27292561 None:intergenic 25.0%
! AATAAATTGTCTCACTTTCT+TGG - Chr8:27293472-27293491 MsG0880043584.01.T01:intron 25.0%
! ACTAAGATAACTTCATGAAA+GGG + Chr8:27292541-27292560 None:intergenic 25.0%
! AGTAGAAATTGAGAGTAATA+AGG + Chr8:27293224-27293243 None:intergenic 25.0%
! ATTCAATATTCTTCTGTTTC+AGG - Chr8:27294536-27294555 MsG0880043584.01.T01:intron 25.0%
! GTTGTTGCATGTAATAATAA+TGG + Chr8:27294508-27294527 None:intergenic 25.0%
! TACATGTAGTAAGTAAACTA+AGG - Chr8:27294369-27294388 MsG0880043584.01.T01:intron 25.0%
! TAGTAAGTAAACTAAGGAAA+TGG - Chr8:27294375-27294394 MsG0880043584.01.T01:intron 25.0%
! TATTGGTATAATATTTGCAG+GGG - Chr8:27294283-27294302 MsG0880043584.01.T01:intron 25.0%
! TGATAAGTAAGCATTAAGTT+TGG + Chr8:27292970-27292989 None:intergenic 25.0%
! TGTTGCATGTAATAATAATG+GGG + Chr8:27294506-27294525 None:intergenic 25.0%
! TTGAAGATGAAAAGAGTTAT+AGG + Chr8:27293666-27293685 None:intergenic 25.0%
!! AATTTTATCATTTGAGAGAG+AGG - Chr8:27292578-27292597 MsG0880043584.01.T01:CDS 25.0%
!! GTATTGGTATAATATTTGCA+GGG - Chr8:27294282-27294301 MsG0880043584.01.T01:intron 25.0%
!! TGTATTGGTATAATATTTGC+AGG - Chr8:27294281-27294300 MsG0880043584.01.T01:intron 25.0%
AATTATAAATCGTCTCCTCA+TGG + Chr8:27293342-27293361 None:intergenic 30.0%
AGGCTTCAAGTAATTGAATT+TGG + Chr8:27294481-27294500 None:intergenic 30.0%
AGTTTACTTACTACATGTAC+TGG + Chr8:27294368-27294387 None:intergenic 30.0%
ATGCTGAAATAGTTTCTGTT+GGG - Chr8:27294402-27294421 MsG0880043584.01.T01:intron 30.0%
ATTAAAAGAGGGAATTCACA+AGG + Chr8:27293793-27293812 None:intergenic 30.0%
ATTAGGTTATATGTAACGCT+TGG - Chr8:27293166-27293185 MsG0880043584.01.T01:intron 30.0%
CAAAACATAGATTCTAGACA+TGG - Chr8:27292914-27292933 MsG0880043584.01.T01:intron 30.0%
GACAAGAAATTAACCTTAAC+TGG - Chr8:27294332-27294351 MsG0880043584.01.T01:intron 30.0%
GACCAATAAATCAGAATTGT+TGG + Chr8:27293731-27293750 None:intergenic 30.0%
GATTTAGCTACTTATTGTCA+TGG + Chr8:27292718-27292737 None:intergenic 30.0%
GGAATCCATATATGATCATT+AGG - Chr8:27293149-27293168 MsG0880043584.01.T01:intron 30.0%
TGATAATATCAAAGGAAAGC+TGG - Chr8:27293128-27293147 MsG0880043584.01.T01:intron 30.0%
! CATGTAATAATAATGGGGAT+AGG + Chr8:27294501-27294520 None:intergenic 30.0%
! TTCTTCTTTTCATCTTTTGC+AGG + Chr8:27294428-27294447 None:intergenic 30.0%
!! GAATGATATTTGGTGTTGAA+CGG - Chr8:27293297-27293316 MsG0880043584.01.T01:intron 30.0%
AATTGTCTCACTTTCTTGGA+AGG - Chr8:27293476-27293495 MsG0880043584.01.T01:intron 35.0%
AGAGATCTCACGATATTGTT+TGG - Chr8:27293078-27293097 MsG0880043584.01.T01:CDS 35.0%
AGTAGCTAAATCTCCATTGT+TGG - Chr8:27292726-27292745 MsG0880043584.01.T01:intron 35.0%
AGTTGTGAAGTGAAAATGAG+AGG + Chr8:27293637-27293656 None:intergenic 35.0%
ATATTCTTCTGTTTCAGGAG+TGG - Chr8:27294541-27294560 MsG0880043584.01.T01:intron 35.0%
ATCATTTGAGAGAGAGGAAT+AGG - Chr8:27292584-27292603 MsG0880043584.01.T01:CDS 35.0%
CATAGATTCTAGACATGGAA+TGG - Chr8:27292919-27292938 MsG0880043584.01.T01:intron 35.0%
CATGCTGAAATAGTTTCTGT+TGG - Chr8:27294401-27294420 MsG0880043584.01.T01:intron 35.0%
GGGATACGTGATAATATCAA+AGG - Chr8:27293120-27293139 MsG0880043584.01.T01:intron 35.0%
GGTTCTTTGTATCTTCATCA+TGG + Chr8:27293514-27293533 None:intergenic 35.0%
GTAGCTAAATCTCCATTGTT+GGG - Chr8:27292727-27292746 MsG0880043584.01.T01:intron 35.0%
TAAAAGAAGAGCTAGGGTAT+TGG + Chr8:27293700-27293719 None:intergenic 35.0%
TAACTAGTCAACTCAAGTCA+AGG + Chr8:27293587-27293606 None:intergenic 35.0%
TACTAAACGCGGTAATAGTA+TGG + Chr8:27293545-27293564 None:intergenic 35.0%
TCATTTGAGAGAGAGGAATA+GGG - Chr8:27292585-27292604 MsG0880043584.01.T01:CDS 35.0%
TGTTCAATTGTGCAAACTGA+GGG - Chr8:27294705-27294724 MsG0880043584.01.T01:CDS 35.0%
TTATATGTAACGCTTGGTCA+AGG - Chr8:27293172-27293191 MsG0880043584.01.T01:intron 35.0%
! GTTACAGAAACTAGTGTTGA+AGG - Chr8:27293859-27293878 MsG0880043584.01.T01:intron 35.0%
! TGTCTTCATAGCTTTTTGCT+TGG + Chr8:27293906-27293925 None:intergenic 35.0%
AAAGCTATGAAGACAGTCTC+TGG - Chr8:27293911-27293930 MsG0880043584.01.T01:intron 40.0%
AGTACCTCTAATCCCAACAA+TGG + Chr8:27292742-27292761 None:intergenic 40.0%
ATCTAAGCCTGATGTGAAGA+AGG - Chr8:27294454-27294473 MsG0880043584.01.T01:intron 40.0%
ATCTCCATTGTTGGGATTAG+AGG - Chr8:27292735-27292754 MsG0880043584.01.T01:intron 40.0%
ATTTGGTCCTTCTTCACATC+AGG + Chr8:27294464-27294483 None:intergenic 40.0%
CTCTTCAATCCATTCTTGCA+AGG - Chr8:27292689-27292708 MsG0880043584.01.T01:intron 40.0%
GACACGAATGATGTTGTTGA+GGG - Chr8:27293100-27293119 MsG0880043584.01.T01:CDS 40.0%
GACATGTGACATTACCTGAA+AGG + Chr8:27293937-27293956 None:intergenic 40.0%
GTGACGTGTCAAAGACTTAA+TGG - Chr8:27292429-27292448 MsG0880043584.01.T01:CDS 40.0%
GTGTGATGTCTCAACAACAA+AGG + Chr8:27292652-27292671 None:intergenic 40.0%
GTGTTCAATTGTGCAAACTG+AGG - Chr8:27294704-27294723 MsG0880043584.01.T01:CDS 40.0%
TAACTTCATGAAAGGGCAAG+TGG + Chr8:27292534-27292553 None:intergenic 40.0%
TATTACCGCGTTTAGTAGAG+TGG - Chr8:27293548-27293567 MsG0880043584.01.T01:intron 40.0%
TCAAGTCAAGGAAAGTAGTG+TGG + Chr8:27293575-27293594 None:intergenic 40.0%
TCTCACTTTCTTGGAAGGAA+CGG - Chr8:27293481-27293500 MsG0880043584.01.T01:intron 40.0%
TGATATCGCATTAGTCCATG+AGG - Chr8:27293324-27293343 MsG0880043584.01.T01:intron 40.0%
! ACAGAAACTAGTGTTGAAGG+TGG - Chr8:27293862-27293881 MsG0880043584.01.T01:intron 40.0%
!! ATAGAGTGGGAGTGTTTAGA+AGG - Chr8:27292617-27292636 MsG0880043584.01.T01:CDS 40.0%
!! CTTGCAAGAATGGATTGAAG+AGG + Chr8:27292691-27292710 None:intergenic 40.0%
AACGCGGTAATAGTATGGTG+TGG + Chr8:27293540-27293559 None:intergenic 45.0%
AGGGTGAGAACTCATAGAGT+GGG - Chr8:27292604-27292623 MsG0880043584.01.T01:CDS 45.0%
CAGCATATGACACATCCAAC+AGG + Chr8:27294575-27294594 None:intergenic 45.0%
GAAGAAACATCAACTCGCAG+CGG - Chr8:27292453-27292472 MsG0880043584.01.T01:CDS 45.0%
GCGAGCAATTCAAATCGCAA+CGG - Chr8:27292378-27292397 MsG0880043584.01.T01:exon 45.0%
GGACACGAATGATGTTGTTG+AGG - Chr8:27293099-27293118 MsG0880043584.01.T01:CDS 45.0%
GGTAATAGTATGGTGTGGTG+TGG + Chr8:27293535-27293554 None:intergenic 45.0%
TAGGGTGAGAACTCATAGAG+TGG - Chr8:27292603-27292622 MsG0880043584.01.T01:CDS 45.0%
TCATGGAAGCCTTGCAAGAA+TGG + Chr8:27292701-27292720 None:intergenic 45.0%
TGGATCTGTGTCTCCAGTTA+AGG + Chr8:27294348-27294367 None:intergenic 45.0%
! AGGTGGATTTACACGATGAC+AGG - Chr8:27293879-27293898 MsG0880043584.01.T01:intron 45.0%
! TCACCTCTGGGAGTTGAAAA+CGG + Chr8:27292413-27292432 None:intergenic 45.0%
ACGAGCACATCAACTCACAG+TGG - Chr8:27292306-27292325 MsG0880043584.01.T01:three_prime_UTR 50.0%
AGTCTTTGACACGTCACCTC+TGG + Chr8:27292426-27292445 None:intergenic 50.0%
CTTTCTTGGAAGGAACGGTG+TGG - Chr8:27293486-27293505 MsG0880043584.01.T01:intron 50.0%
GGAGTGGAACAAGATCCTGT+TGG - Chr8:27294557-27294576 MsG0880043584.01.T01:CDS 50.0%
GTCTTTGACACGTCACCTCT+GGG + Chr8:27292425-27292444 None:intergenic 50.0%
GTGGTCCACTCTACTAAACG+CGG + Chr8:27293556-27293575 None:intergenic 50.0%
! AAGACAGTCTCTGGCCTTTC+AGG - Chr8:27293920-27293939 MsG0880043584.01.T01:intron 50.0%
!! GAGCATGGTTTTGCTCGCAA+CGG - Chr8:27292356-27292375 MsG0880043584.01.T01:three_prime_UTR 50.0%
!! GAGTGGGAGTGTTTAGAAGG+TGG - Chr8:27292620-27292639 MsG0880043584.01.T01:CDS 50.0%
ACTCACAGTGGCGAGTAGCA+AGG - Chr8:27292318-27292337 MsG0880043584.01.T01:three_prime_UTR 55.0%
CTCACAGTGGCGAGTAGCAA+GGG - Chr8:27292319-27292338 MsG0880043584.01.T01:three_prime_UTR 55.0%
TCAAATCGCAACGGCGAGCT+AGG - Chr8:27292387-27292406 MsG0880043584.01.T01:exon 55.0%
TTGTGTTCGCCACTGCGAGT+AGG + Chr8:27292274-27292293 None:intergenic 55.0%
!! AGGCCGTTTTCAACTCCCAG+AGG - Chr8:27292407-27292426 MsG0880043584.01.T01:CDS 55.0%
AGTGGCGAGTAGCAAGGGAC+TGG - Chr8:27292324-27292343 MsG0880043584.01.T01:three_prime_UTR 60.0%
TCGCCACTGCGAGTAGGATG+CGG + Chr8:27292268-27292287 None:intergenic 60.0%
! GAGTAGCAAGGGACTGGCAG+AGG - Chr8:27292330-27292349 MsG0880043584.01.T01:three_prime_UTR 60.0%
CGCCACTGCGAGTAGGATGC+GGG + Chr8:27292267-27292286 None:intergenic 65.0%
GACTGGCAGAGGCAGGAGCA+TGG - Chr8:27292341-27292360 MsG0880043584.01.T01:three_prime_UTR 65.0%
GGCGAGTGAAGTTGCTCGCG+AGG - Chr8:27292474-27292493 MsG0880043584.01.T01:CDS 65.0%
TGCCCGCATCCTACTCGCAG+TGG - Chr8:27292262-27292281 MsG0880043584.01.T01:three_prime_UTR 65.0%
! AGCAAGGGACTGGCAGAGGC+AGG - Chr8:27292334-27292353 MsG0880043584.01.T01:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 27292242 27294748 27292242 ID=MsG0880043584.01;Name=MsG0880043584.01
Chr8 mRNA 27292242 27294748 27292242 ID=MsG0880043584.01.T01;Parent=MsG0880043584.01;Name=MsG0880043584.01.T01;_AED=0.50;_eAED=0.63;_QI=0|0.5|0.66|1|1|1|3|153|186
Chr8 exon 27292242 27292687 27292242 ID=MsG0880043584.01.T01:exon:22678;Parent=MsG0880043584.01.T01
Chr8 exon 27293049 27293124 27293049 ID=MsG0880043584.01.T01:exon:22677;Parent=MsG0880043584.01.T01
Chr8 exon 27294557 27294748 27294557 ID=MsG0880043584.01.T01:exon:22676;Parent=MsG0880043584.01.T01
Chr8 CDS 27294557 27294748 27294557 ID=MsG0880043584.01.T01:cds;Parent=MsG0880043584.01.T01
Chr8 CDS 27293049 27293124 27293049 ID=MsG0880043584.01.T01:cds;Parent=MsG0880043584.01.T01
Chr8 CDS 27292395 27292687 27292395 ID=MsG0880043584.01.T01:cds;Parent=MsG0880043584.01.T01
Chr8 three_prime_UTR 27292242 27292394 27292242 ID=MsG0880043584.01.T01:three_prime_utr;Parent=MsG0880043584.01.T01
Gene Sequence

>MsG0880043584.01.T01

CTGGAACAGGAAGCAGTATTTGCCCGCATCCTACTCGCAGTGGCGAACACAAGAGCTCGCAACGACGAGCACATCAACTCACAGTGGCGAGTAGCAAGGGACTGGCAGAGGCAGGAGCATGGTTTTGCTCGCAACGGCGAGCAATTCAAATCGCAACGGCGAGCTAGGCCGTTTTCAACTCCCAGAGGTGACAAACTAGTGTTGAAGGTGGATTTACACGATGACAGGACCAAGCAAAAAGCTATGAAGACAGTCTCTGGCCTTTCAGGGGTAGAGTCAGTTTCTGTAGACATGAAAGACAAGAAATTAACCTTAACTGGAGACACAGATCCAGTACATGTAGTAAGTAAACTAAGGAAATGGTGTCATGCTGAAATAGTTTCTGTTGGGCCTGCAAAAGATGAAAAGAAGAAAGAAGAATCTAAGCCTGATGTGAAGAAGGACCAAATTCAATTACTTGAAGCCTATCCCCATTATTATTACATGCAACAACCGCAATATATTCAATATTCTTCTGTTTCAGGAGTGGAACAAGATCCTGTTGGATGTGTCATATGCTGA
Protein sequence

>MsG0880043584.01.T01

LEQEAVFARILLAVANTRARNDEHINSQWRVARDWQRQEHGFARNGEQFKSQRRARPFSTPRGDKLVLKVDLHDDRTKQKAMKTVSGLSGVESVSVDMKDKKLTLTGDTDPVHVVSKLRKWCHAEIVSVGPAKDEKKKEESKPDVKKDQIQLLEAYPHYYYMQQPQYIQYSSVSGVEQDPVGCVIC*