AlfalfaGEDB | MsG0880044640.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044640.01

KEGG: -
GO: GO:0004672 GO:0004674 GO:0005524 GO:0006468 GO:0048544
PFAM: PF00954 PF01453 PF07714 PF08276

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044640.01.T01	RDX68443.1	65.349	759	247	6	32	778	2	756	0	1014

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044640.01.T01	O81832	49.936	783	370	9	10	778	9	783	0	774

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044640.01.T01	A0A396GLE7	88.862	817	52	1	1	778	1	817	0.0	1494

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048982.01	MsG0880044640.01	0.823483	1.352270e-53	1.165812e-50
MsG0180004602.01	MsG0880044640.01	0.812403	4.315404e-51	2.741410e-48
MsG0380012161.01	MsG0880044640.01	0.816730	4.756228e-52	3.397186e-49
MsG0380015166.01	MsG0880044640.01	0.802300	5.988291e-49	2.923243e-46
MsG0380016182.01	MsG0880044640.01	0.817958	2.516474e-52	1.858922e-49
MsG0780036978.01	MsG0880044640.01	0.808416	3.130844e-50	1.789129e-47
MsG0780038833.01	MsG0880044640.01	0.818998	1.462766e-52	1.112127e-49
MsG0880044638.01	MsG0880044640.01	0.892022	2.327254e-74	2.089532e-70

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044640.01.T01	MTR_8g465470	88.127	817	58	1	1	778	32	848	0.0	1486
MsG0880044640.01.T01	MTR_8g465570	84.211	817	51	2	1	778	1	778	0.0	1390
MsG0880044640.01.T01	MTR_8g465410	72.222	810	181	3	9	778	12	817	0.0	1212
MsG0880044640.01.T01	MTR_8g465580	71.807	642	147	3	9	620	12	649	0.0	956
MsG0880044640.01.T01	MTR_6g012810	56.143	814	294	16	18	778	117	920	0.0	884
MsG0880044640.01.T01	MTR_6g012810	60.396	101	39	1	560	659	2	102	3.85e-26	115
MsG0880044640.01.T01	MTR_3g020320	53.923	803	330	8	13	778	17	816	0.0	850
MsG0880044640.01.T01	MTR_3g019390	53.988	815	326	9	9	778	10	820	0.0	847
MsG0880044640.01.T01	MTR_3g020280	53.071	814	338	10	5	778	6	815	0.0	845
MsG0880044640.01.T01	MTR_3g020230	54.545	781	327	10	10	778	12	776	0.0	835

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0880044640.01.T01	AT4G27290	49.936	783	370	9	10	778	9	783	774
MsG0880044640.01.T01	AT4G27290	47.816	824	372	10	10	778	9	829	768
MsG0880044640.01.T01	AT4G27300	46.926	797	372	15	26	778	26	815	677
MsG0880044640.01.T01	AT4G21380	42.651	830	398	13	22	778	26	850	655
MsG0880044640.01.T01	AT1G11340	43.434	792	385	13	24	757	18	804	648
MsG0880044640.01.T01	AT1G65790	41.748	824	409	10	22	778	24	843	646
MsG0880044640.01.T01	AT1G65800	43.456	787	377	12	33	757	37	817	639
MsG0880044640.01.T01	AT4G21390	42.073	820	389	14	9	757	14	818	621
MsG0880044640.01.T01	AT1G11410	42.390	795	394	10	24	757	28	819	621
MsG0880044640.01.T01	AT1G11410	42.390	795	394	10	24	757	21	812	621

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Find 150 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGTTCTATTCGTCG+TGG	0.630903	8:+46103628	MsG0880044640.01.T01:CDS
AAACCAAAGTCTGGCCATCA+TGG	0.493923	8:-46103227	None:intergenic
AAACTAAATATTGGTAGATC+AGG	0.415406	8:-46105103	None:intergenic
AAAGCATTCAAACTTCCCAA+AGG	0.640053	8:-46103903	None:intergenic
AAAGTCCCTTCTTCGGAATT+GGG	0.379192	8:+46104383	MsG0880044640.01.T01:CDS
AAATCAGATGTGTTTAGTTT+CGG	0.367177	8:+46105955	MsG0880044640.01.T01:CDS
AACAACCACTTCCTCCATTT+CGG	0.340352	8:-46104295	None:intergenic
AACAGTGGAATATATCATCT+TGG	0.492165	8:+46104084	MsG0880044640.01.T01:CDS
AACTCCTTTGACTATTGTGT+GGG	0.496547	8:+46103332	MsG0880044640.01.T01:CDS
AAGATATGAATTTGTCATGA+CGG	0.598974	8:+46103815	MsG0880044640.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATATCTGATCAAGGGT+TGG	+	Chr8:46105329-46105348	MsG0880044640.01.T01:CDS	30.0%
AACAGTGGAATATATCATCT+TGG	+	Chr8:46104084-46104103	MsG0880044640.01.T01:CDS	30.0%
AATAAGCGGGAAAAAGATTA+AGG	+	Chr8:46105996-46106015	MsG0880044640.01.T01:CDS	30.0%
AATATATCATCTTGGTCTAG+TGG	+	Chr8:46104092-46104111	MsG0880044640.01.T01:CDS	30.0%
AATCCAAAAATCTCAGACTT+TGG	+	Chr8:46105744-46105763	MsG0880044640.01.T01:CDS	30.0%
AATTCAGTATGCAATATGGA+CGG	+	Chr8:46104011-46104030	MsG0880044640.01.T01:CDS	30.0%
ACACCAGTGCAAAATAATTT+AGG	+	Chr8:46103369-46103388	MsG0880044640.01.T01:CDS	30.0%
ACTAAACACATCTGATTTCA+TGG	-	Chr8:46105953-46105972	None:intergenic	30.0%
AGATGATATATTCCACTGTT+CGG	-	Chr8:46104084-46104103	None:intergenic	30.0%
AGCTTAGACTACTTCATATT+TGG	+	Chr8:46105474-46105493	MsG0880044640.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	46103126	46106436	46103126	ID=MsG0880044640.01;Name=MsG0880044640.01
Chr8	mRNA	46103126	46106436	46103126	ID=MsG0880044640.01.T01;Parent=MsG0880044640.01;Name=MsG0880044640.01.T01;_AED=0.11;_eAED=0.12;_QI=0\|0\|0\|1\|1\|1\|6\|0\|778
Chr8	exon	46103126	46104404	46103126	ID=MsG0880044640.01.T01:exon:18662;Parent=MsG0880044640.01.T01
Chr8	exon	46105032	46105204	46105032	ID=MsG0880044640.01.T01:exon:18663;Parent=MsG0880044640.01.T01
Chr8	exon	46105285	46105495	46105285	ID=MsG0880044640.01.T01:exon:18664;Parent=MsG0880044640.01.T01
Chr8	exon	46105592	46105829	46105592	ID=MsG0880044640.01.T01:exon:18665;Parent=MsG0880044640.01.T01
Chr8	exon	46105909	46106059	46105909	ID=MsG0880044640.01.T01:exon:18666;Parent=MsG0880044640.01.T01
Chr8	exon	46106152	46106436	46106152	ID=MsG0880044640.01.T01:exon:18667;Parent=MsG0880044640.01.T01
Chr8	CDS	46103126	46104404	46103126	ID=MsG0880044640.01.T01:cds;Parent=MsG0880044640.01.T01
Chr8	CDS	46105032	46105204	46105032	ID=MsG0880044640.01.T01:cds;Parent=MsG0880044640.01.T01
Chr8	CDS	46105285	46105495	46105285	ID=MsG0880044640.01.T01:cds;Parent=MsG0880044640.01.T01
Chr8	CDS	46105592	46105829	46105592	ID=MsG0880044640.01.T01:cds;Parent=MsG0880044640.01.T01
Chr8	CDS	46105909	46106059	46105909	ID=MsG0880044640.01.T01:cds;Parent=MsG0880044640.01.T01
Chr8	CDS	46106152	46106436	46106152	ID=MsG0880044640.01.T01:cds;Parent=MsG0880044640.01.T01

Gene Sequence

>MsG0880044640.01.T01

ATGGTTGATATTAGAATCACAGAGTTCATAATTTTGTTCTTTTTATCCTCCAGCTTGAGAACAACCACTTCACTTGACACTTTATCTCTGAATCAATCTATCCATGATGGCCAGACTTTGGTTTCAGCACGTGGAACTTTTGAAGTCGGTTTCTTCAGTCCAGGAAATTCAAGAGGAAGATATTTAGGTATGTGGTATAAAAATTTAACTCCTTTGACTATTGTGTGGGTGGCCAACAGAGAAACACCAGTGCAAAATAATTTAGGAGTCTTAAAGCTCAATGAAAATGGTGTTCTTATGATTCTCAATGGCACAAACAACACCATTTGGTCCTCGAATGCCTCAAACAAACCAGTGAGAAATTCAATAACTGCACAGCTCATGGACACAGGAAATCTTGTGTTGAAAAATTCGGCAAACAATATTTTGTGGCAGAGTTTTGACTATCCATGTGATACATTTTTGCCAGGAATGAAGCTTGGATGGAACTTAGTAACCGGTCAAAACAAGTTCTATTCGTCGTGGAAAAGTTCAAATGATCCAGCTAAGGGAGATCATTCGGTAATTATTGACATTAGAGGATATCCTCAAATAGTTGTTATGAAGGGATCAGTTATAAGATTGAGAATAGGATCATGGAATGGTCACACTTTTACCGGATATCCAATACAACCATTAAAACGAACGCAAAGATATGAATTTGTCATGACGGACAAAGAAGTGTATCTTTGGTATGAACTCATTGATAGCTCTGTTGTGTCAATTTTTGCAGTCTCCCCTTTGGGAAGTTTGAATGCTTTAGCCTGGACAAGTGAAACAAGCGATAGGATAGTCATCCAAACTGGAATGGAAGATTCGTGTGATAGTTATGCATTGTGTGGTGCTAATTCAGTATGCAATATGGACGGAAACGTTCCTAAATGTGAATGCTTAAAAGGTTATGTTCCTAAGTTTCCCGAACAGTGGAATATATCATCTTGGTCTAGTGGTTGTGTTCCGAAAATTAAGTCTTTTTGTGATAACAATTCCACAATTGGCTTCTTGAAGTACGGAGAAATGAAATTGCCGGACACATCTTCATCAAGGTACAATAAAACCATGAGCCTGCTGGAATGTCAAAAAGCGTGTATGAAAAATTGTTCGTGTACGGCTTATACAAATGCGGATATCCGAAATGGAGGAAGTGGTTGTTTGCTTTGGTTTGATGATCTGGTTGACATGAGAATATTCTCTCAGTGGGGACAAGATCTCTATATCAAAGTCCCTTCTTCGGAATTGGTGGCGCCGAGAGTATATCATCTTGCACCATTTCAATTGCGGAAAAAATATTTTAGGTTGAAGAAAGAAGAGCCTGATCTACCAATATTTAGTTTTCCAATCATTGTTAAAGCAACTGGTAATTTTTCTGGCAGAAATATACTTGGGGAAGGTGGATTTGGACCAGTTTATAAGGGTACGCTGATAGGTGGAAAAGAGGTAGCCATAAAACGGAACTCAAAAATATCTGATCAAGGGTTGGAGGAATTTAAAAATGAAGTTCTGTTGATTGCAAAGCTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGTTGTATTCACAGAGAGGAAAAATTGTTGATCTATGAATACATGCCCAATAGGAGCTTAGACTACTTCATATTTGATGAAACTAGAAGCAAACTCTTGGACTGGTCGAAGCGTTCCCATATTATTGCTGGTGTTGCTAGAGGACTTCTTTATCTTCACCAAGACTCCAGACTTAGAATAATTCACAGAGATTTAAAGTTAAGCAATATCTTACTAGACGCCCTTATGAATCCAAAAATCTCAGACTTTGGCCTGGCTCGGACATTTTGTGGAGATCAAGTTGAAGCCAAAACAAGGAAATTGGTTGGAACATATGGCTACATGCCTCCAGAGTATGCTGTTCATGGTCGTTACTCCATGAAATCAGATGTGTTTAGTTTCGGAGTAATAGTATTGGAGATAATAAGCGGGAAAAAGATTAAGGTGTTTTATGATCCAGAACACTCTCTCAACCTTCTTGGCCATGCATGGAGACTCTGGATTGATAACATGGCAATGGAACTAGTTGATATGCACTTACTTGAAACAATCAATTATTCTGAAATCTTACGATACATGCATGTTGGGTTGTTGTGCGTACAAGAAAAACCGGGAGATAGACCAGACATGTCATCTGTAATTCTTATGTTGAATGGTGAGAAATTATTGTCTCAGCCGAAAGCTCCCGGATTTTATACTGGAAGGGGCTTACCTAAAACAATATCGCCAACTTCAAATGAGATGTCAATTACAACTTTTGAGGCAAGATAA

Protein sequence

>MsG0880044640.01.T01

MVDIRITEFIILFFLSSSLRTTTSLDTLSLNQSIHDGQTLVSARGTFEVGFFSPGNSRGRYLGMWYKNLTPLTIVWVANRETPVQNNLGVLKLNENGVLMILNGTNNTIWSSNASNKPVRNSITAQLMDTGNLVLKNSANNILWQSFDYPCDTFLPGMKLGWNLVTGQNKFYSSWKSSNDPAKGDHSVIIDIRGYPQIVVMKGSVIRLRIGSWNGHTFTGYPIQPLKRTQRYEFVMTDKEVYLWYELIDSSVVSIFAVSPLGSLNALAWTSETSDRIVIQTGMEDSCDSYALCGANSVCNMDGNVPKCECLKGYVPKFPEQWNISSWSSGCVPKIKSFCDNNSTIGFLKYGEMKLPDTSSSRYNKTMSLLECQKACMKNCSCTAYTNADIRNGGSGCLLWFDDLVDMRIFSQWGQDLYIKVPSSELVAPRVYHLAPFQLRKKYFRLKKEEPDLPIFSFPIIVKATGNFSGRNILGEGGFGPVYKGTLIGGKEVAIKRNSKISDQGLEEFKNEVLLIAKLQHRNLVKLLGCCIHREEKLLIYEYMPNRSLDYFIFDETRSKLLDWSKRSHIIAGVARGLLYLHQDSRLRIIHRDLKLSNILLDALMNPKISDFGLARTFCGDQVEAKTRKLVGTYGYMPPEYAVHGRYSMKSDVFSFGVIVLEIISGKKIKVFYDPEHSLNLLGHAWRLWIDNMAMELVDMHLLETINYSEILRYMHVGLLCVQEKPGDRPDMSSVILMLNGEKLLSQPKAPGFYTGRGLPKTISPTSNEMSITTFEAR*