AlfalfaGEDB | MsG0180004602.01

M. sativa cultivar ZhongmuNo.1 / MsG0180004602.01

KEGG: -
GO: -
PFAM: PF00838

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004602.01.T01	XP_021645860.1	79.874	159	31	1	32	190	11	168	2.20E-85	259

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004602.01.T01	Q5J907	76.25	160	37	1	31	190	10	168	1.99E-83	247

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004602.01.T01	A0A6A6MV21	79.874	159	31	1	32	190	11	168	1.05e-85	259

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047912.01	MsG0180004602.01	0.804292	2.317349e-49	1.190350e-46
MsG0080047957.01	MsG0180004602.01	0.801140	1.036389e-48	4.912526e-46
MsG0080048764.01	MsG0180004602.01	0.804655	1.946131e-49	1.009067e-46
MsG0080048809.01	MsG0180004602.01	-0.868823	4.901561e-66	1.798107e-62
MsG0080048982.01	MsG0180004602.01	0.813923	2.002004e-51	1.324640e-48
MsG0180000240.01	MsG0180004602.01	-0.823609	1.263212e-53	1.092950e-50
MsG0180000255.01	MsG0180004602.01	0.801011	1.101021e-48	5.202126e-46
MsG0180000271.01	MsG0180004602.01	0.815381	9.518588e-52	6.552339e-49
MsG0180001663.01	MsG0180004602.01	0.826988	2.004769e-54	1.910157e-51
MsG0180001712.01	MsG0180004602.01	0.830513	2.815471e-55	2.972635e-52
MsG0180002750.01	MsG0180004602.01	-0.813706	2.234115e-51	1.469671e-48
MsG0180002955.01	MsG0180004602.01	0.810355	1.201347e-50	7.225569e-48
MsG0180004085.01	MsG0180004602.01	0.858221	9.560254e-63	2.422102e-59
MsG0180004599.01	MsG0180004602.01	0.895106	1.313602e-75	1.343958e-71
MsG0180004600.01	MsG0180004602.01	0.896028	5.460544e-76	5.802078e-72
MsG0180004602.01	MsG0180004603.01	0.940144	3.854538e-100	4.139686e-95
MsG0180004602.01	MsG0180005160.01	0.805284	1.438121e-49	7.578052e-47
MsG0180004602.01	MsG0180005354.01	0.822577	2.199021e-53	1.848085e-50
MsG0180004602.01	MsG0180005881.01	-0.818473	1.924950e-52	1.442354e-49
MsG0180004602.01	MsG0180005999.01	0.832124	1.130317e-55	1.251634e-52
MsG0180004602.01	MsG0180006138.01	0.810463	1.138650e-50	6.867943e-48
MsG0180004602.01	MsG0280006411.01	0.829575	4.767612e-55	4.898940e-52
MsG0180004602.01	MsG0280006596.01	0.803352	3.632583e-49	1.821315e-46
MsG0180004602.01	MsG0280007547.01	0.823702	1.201180e-53	1.042188e-50
MsG0180004602.01	MsG0280008515.01	0.817860	2.648814e-52	1.951483e-49
MsG0180004602.01	MsG0280008894.01	0.827536	1.481626e-54	1.434394e-51
MsG0180004602.01	MsG0280009350.01	0.801254	9.818228e-49	4.667232e-46
MsG0180004602.01	MsG0280009754.01	0.822215	2.668335e-53	2.219206e-50
MsG0180004602.01	MsG0280010551.01	0.845409	4.135933e-59	6.886055e-56
MsG0180004602.01	MsG0280011235.01	0.828183	1.035786e-54	1.021931e-51
MsG0180004602.01	MsG0280011376.01	0.844598	6.844891e-59	1.110652e-55
MsG0180004602.01	MsG0280011410.01	0.830926	2.230071e-55	2.383680e-52
MsG0180004602.01	MsG0380011537.01	0.806707	7.217260e-50	3.944325e-47
MsG0180004602.01	MsG0380011895.01	0.849176	3.825485e-60	7.192218e-57
MsG0180004602.01	MsG0380014248.01	0.803619	3.198025e-49	1.614560e-46
MsG0180004602.01	MsG0380014551.01	-0.805784	1.129593e-49	6.029644e-47
MsG0180004602.01	MsG0380014770.01	0.838150	3.411991e-57	4.529437e-54
MsG0180004602.01	MsG0380015497.01	0.823616	1.258631e-53	1.089212e-50
MsG0180004602.01	MsG0380016182.01	0.828619	8.131132e-55	8.124577e-52
MsG0180004602.01	MsG0380016581.01	0.831268	1.837802e-55	1.984224e-52
MsG0180004602.01	MsG0380016624.01	0.840812	6.939531e-58	1.000074e-54
MsG0180004602.01	MsG0380017040.01	0.811387	7.181368e-51	4.439246e-48
MsG0180004602.01	MsG0380017551.01	-0.851672	7.617313e-61	1.553400e-57
MsG0180004602.01	MsG0380017941.01	0.818135	2.295032e-52	1.703619e-49
MsG0180004602.01	MsG0480018236.01	0.808619	2.833352e-50	1.627604e-47
MsG0180004602.01	MsG0480018635.01	0.800955	1.130703e-48	5.334574e-46
MsG0180004602.01	MsG0480018883.01	0.831311	1.794050e-55	1.939463e-52
MsG0180004602.01	MsG0480020327.01	-0.818901	1.539096e-52	1.166970e-49
MsG0180004602.01	MsG0480021041.01	0.804063	2.585567e-49	1.320420e-46
MsG0180004602.01	MsG0480022198.01	0.809683	1.676377e-50	9.907031e-48
MsG0180004602.01	MsG0480022392.01	-0.807548	4.789653e-50	2.675338e-47
MsG0180004602.01	MsG0480022482.01	0.808513	2.984868e-50	1.710029e-47
MsG0180004602.01	MsG0480022933.01	0.833783	4.372684e-56	5.088284e-53
MsG0180004602.01	MsG0480023248.01	0.841110	5.794490e-58	8.426950e-55
MsG0180004602.01	MsG0580024114.01	0.813698	2.244134e-51	1.475895e-48
MsG0180004602.01	MsG0580024363.01	-0.801529	8.627028e-49	4.129420e-46
MsG0180004602.01	MsG0580024581.01	0.813076	3.072976e-51	1.987053e-48
MsG0180004602.01	MsG0580025026.01	0.820777	5.733220e-53	4.579238e-50
MsG0180004602.01	MsG0580025328.01	0.806554	7.775207e-50	4.232788e-47
MsG0180004602.01	MsG0580025329.01	0.823692	1.207799e-53	1.047623e-50
MsG0180004602.01	MsG0580025520.01	0.801175	1.019258e-48	4.835469e-46
MsG0180004602.01	MsG0580026023.01	0.805075	1.590492e-49	8.336386e-47
MsG0180004602.01	MsG0580026777.01	0.813913	2.011812e-51	1.330798e-48
MsG0180004602.01	MsG0580029999.01	-0.858483	7.986223e-63	2.041464e-59
MsG0180004602.01	MsG0680031377.01	-0.839496	1.530075e-57	2.116834e-54
MsG0180004602.01	MsG0680031815.01	0.806331	8.663634e-50	4.689619e-47
MsG0180004602.01	MsG0680032058.01	0.806870	6.666047e-50	3.658586e-47
MsG0180004602.01	MsG0680033391.01	0.842334	2.755556e-58	4.164571e-55
MsG0180004602.01	MsG0680034655.01	0.817400	3.363761e-52	2.447131e-49
MsG0180004602.01	MsG0680034914.01	0.829856	4.073975e-55	4.221386e-52
MsG0180004602.01	MsG0680035582.01	0.805570	1.252540e-49	6.648940e-47
MsG0180004602.01	MsG0680035844.01	0.800375	1.484497e-48	6.901393e-46
MsG0180004602.01	MsG0780036978.01	0.801657	8.118047e-49	3.898304e-46
MsG0180004602.01	MsG0780037082.01	0.818560	1.839093e-52	1.381250e-49
MsG0180004602.01	MsG0780038092.01	0.804765	1.846354e-49	9.600809e-47
MsG0180004602.01	MsG0780038636.01	0.820640	6.164474e-53	4.904547e-50
MsG0180004602.01	MsG0780038644.01	0.821205	4.569261e-53	3.693599e-50
MsG0180004602.01	MsG0780039143.01	0.806145	9.480113e-50	5.107317e-47
MsG0180004602.01	MsG0780039405.01	0.802318	5.938650e-49	2.900375e-46
MsG0180004602.01	MsG0780039515.01	-0.802750	4.836509e-49	2.388184e-46
MsG0180004602.01	MsG0780040712.01	0.831304	1.800552e-55	1.946102e-52
MsG0180004602.01	MsG0780041015.01	-0.830170	3.414296e-55	3.569584e-52
MsG0180004602.01	MsG0880042743.01	0.807982	3.873675e-50	2.188394e-47
MsG0180004602.01	MsG0880043172.01	0.803885	2.815234e-49	1.431151e-46
MsG0180004602.01	MsG0880043292.01	0.805026	1.628468e-49	8.524484e-47
MsG0180004602.01	MsG0880043804.01	0.813823	2.105804e-51	1.389606e-48
MsG0180004602.01	MsG0880044062.01	-0.830253	3.258224e-55	3.414726e-52
MsG0180004602.01	MsG0880044455.01	-0.818045	2.406119e-52	1.781563e-49
MsG0180004602.01	MsG0880044640.01	0.812403	4.315404e-51	2.741410e-48
MsG0180004602.01	MsG0880046244.01	0.817245	3.644079e-52	2.639778e-49
MsG0180004602.01	MsG0880047425.01	0.800360	1.494833e-48	6.946816e-46
MsG0180004602.01	MsG0880047689.01	-0.821749	3.421416e-53	2.807908e-50

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004602.01.T01	MTR_1g083350	83.648	159	25	1	32	190	11	168	6.73e-82	240
MsG0180004602.01.T01	MTR_1g083380	83.019	159	26	1	32	190	11	168	9.73e-81	237
MsG0180004602.01.T01	MTR_2g436620	71.250	160	44	2	31	190	10	167	2.15e-76	226
MsG0180004602.01.T01	MTR_6g071090	63.804	163	53	3	21	183	4	160	1.08e-65	199
MsG0180004602.01.T01	MTR_2g436620	69.231	143	42	2	48	190	1	141	1.58e-64	195
MsG0180004602.01.T01	MTR_1g083340	75.342	146	25	2	32	167	11	155	6.82e-59	182

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180004602.01.T01	AT3G16640	66.250	160	53	1	31	190	10	168	3.81e-73	218
MsG0180004602.01.T01	AT3G05540	64.912	171	53	4	21	190	4	168	1.78e-65	199

Find 41 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGAACAACTCTTGCTTTC+TGG	-0.004183	1:+80218656	None:intergenic
TTGATATTGTTGACACTTTC+AGG	0.110440	1:-80218763	MsG0180004602.01.T01:CDS
AATTGTAGGTCTTTGAGTTT+TGG	0.259902	1:+80218600	None:intergenic
TGTTTAAATTGATGTTTAAT+TGG	0.308821	1:-80218327	MsG0180004602.01.T01:three_prime_UTR
TGTTGACACTTTCAGGCTTC+AGG	0.310211	1:-80218756	MsG0180004602.01.T01:CDS
CTACTTTGCTTATGGCTTGA+AGG	0.363173	1:-80218388	MsG0180004602.01.T01:CDS
TCCATTCTCAATTTCCTTGT+AGG	0.365251	1:+80219034	None:intergenic
GATGAAACACATACAATTGT+AGG	0.393371	1:+80218586	None:intergenic
AATTGAGAATGGAATGCTTT+GGG	0.401755	1:-80219024	MsG0180004602.01.T01:CDS
CCATTCTCAATTTCCTTGTA+GGG	0.404442	1:+80219035	None:intergenic
AATTGCTTCTTATCAAAAGC+TGG	0.428621	1:+80218728	None:intergenic
GACTAAAATCATAACTTCAT+AGG	0.445800	1:+80218211	None:intergenic
GAATGGAATGCTTTGGGAAG+TGG	0.450476	1:-80219018	MsG0180004602.01.T01:CDS
TAAGCAAAGTAGAGAAAAGT+TGG	0.453692	1:+80218399	None:intergenic
AAATTGAGAATGGAATGCTT+TGG	0.455334	1:-80219025	MsG0180004602.01.T01:CDS
CCTTGTGTTTGCTTACTACA+AGG	0.455642	1:-80218436	MsG0180004602.01.T01:CDS
CCCTACAAGGAAATTGAGAA+TGG	0.477742	1:-80219035	MsG0180004602.01.T01:CDS
GCTCATCGTTATGGATCGGT+TGG	0.481876	1:-80221354	None:intergenic
TATTTGCAGTGGGTTGTTCA+AGG	0.483236	1:-80218872	MsG0180004602.01.T01:intron
CTCTGACTCATTCCCCTACA+AGG	0.486361	1:-80219048	MsG0180004602.01.T01:CDS
GGAGCAGTGGATGTGAATAT+TGG	0.501116	1:-80218851	MsG0180004602.01.T01:CDS
GGTGCTAATCCTTCTGCTGA+GGG	0.511283	1:-80218830	MsG0180004602.01.T01:CDS
CTCATCGTTATGGATCGGTT+GGG	0.529738	1:-80221353	None:intergenic
GCTTTGGGAAGTGGAAGGAA+AGG	0.531642	1:-80219009	MsG0180004602.01.T01:intron
GTGTTTGCTTACTACAAGGA+TGG	0.538874	1:-80218432	MsG0180004602.01.T01:CDS
CGGTTGGGCAAACTGTCAAT+CGG	0.544245	1:-80221338	MsG0180004602.01.T01:CDS
CATTCTCAATTTCCTTGTAG+GGG	0.549656	1:+80219036	None:intergenic
TGGTGCTAATCCTTCTGCTG+AGG	0.557106	1:-80218831	MsG0180004602.01.T01:CDS
TCGTCTCCACCCTCAGCAGA+AGG	0.563383	1:+80218821	None:intergenic
GGGGAGAGCATGCATGATGA+TGG	0.565967	1:-80218462	MsG0180004602.01.T01:CDS
GCTAATCCTTCTGCTGAGGG+TGG	0.579304	1:-80218827	MsG0180004602.01.T01:CDS
TTCTGCTGAGGGTGGAGACG+AGG	0.580750	1:-80218819	MsG0180004602.01.T01:CDS
CAAACTGTCAATCGGATGGA+AGG	0.582432	1:-80221330	MsG0180004602.01.T01:CDS
TGGGCAAACTGTCAATCGGA+TGG	0.587792	1:-80221334	MsG0180004602.01.T01:CDS
TAGTGCTCATCGTTATGGAT+CGG	0.602980	1:-80221358	None:intergenic
GTAGAGAAAAGTTGGATCAG+TGG	0.605758	1:+80218407	None:intergenic
GAGGGTGGAGACGAGGATGA+TGG	0.616662	1:-80218812	MsG0180004602.01.T01:CDS
CCTTGTAGTAAGCAAACACA+AGG	0.635355	1:+80218436	None:intergenic
GTGGGTTGTTCAAGGAGCAG+TGG	0.636439	1:-80218864	MsG0180004602.01.T01:CDS
GGAATGCTTTGGGAAGTGGA+AGG	0.659950	1:-80219014	MsG0180004602.01.T01:CDS
CGATGATCAAGCTGTCAAAG+TGG	0.698235	1:-80218786	MsG0180004602.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATAAAAAAGAAATCTATA+AGG	-	Chr1:80218499-80218518	MsG0180004602.01.T01:intron	10.0%
!!!	AAAATTGCATTTTTTTTATT+AGG	-	Chr1:80219400-80219419	MsG0180004602.01.T01:intron	10.0%
!!!	AAATTGCATTTTTTTTATTA+GGG	-	Chr1:80219401-80219420	MsG0180004602.01.T01:intron	10.0%
!!!	TTAATTTAATAGAATTTGTT+TGG	-	Chr1:80219129-80219148	MsG0180004602.01.T01:intron	10.0%
!!	AATAAGGATTAAAGAAAATA+AGG	-	Chr1:80218405-80218424	MsG0180004602.01.T01:CDS	15.0%
!!	AATTAGTATATCTTTCAATA+AGG	-	Chr1:80218389-80218408	MsG0180004602.01.T01:CDS	15.0%
!!	ATTTAAATTCATCCTATATT+TGG	+	Chr1:80219041-80219060	None:intergenic	15.0%
!!	TAAACTTAATAAAACCAAAA+AGG	+	Chr1:80220989-80221008	None:intergenic	15.0%
!!	TGTTTAAATTGATGTTTAAT+TGG	-	Chr1:80221210-80221229	MsG0180004602.01.T01:intron	15.0%
!!!	AATTGCATTTTTTTTATTAG+GGG	-	Chr1:80219402-80219421	MsG0180004602.01.T01:intron	15.0%
!!!	TGAATTTTTAAGTTCTAATT+AGG	-	Chr1:80221263-80221282	MsG0180004602.01.T01:intron	15.0%
!!!	TTATCTTTCATCTTTTTATT+TGG	-	Chr1:80220265-80220284	MsG0180004602.01.T01:intron	15.0%
!!!	TTCAAAGATACATTTTTATA+TGG	-	Chr1:80221293-80221312	MsG0180004602.01.T01:CDS	15.0%
!!!	TTTTTTTGTGGATAAATAAA+GGG	-	Chr1:80220308-80220327	MsG0180004602.01.T01:intron	15.0%
!!	AAAAAAACTCAAAAGATGAA+AGG	+	Chr1:80218923-80218942	None:intergenic	20.0%
!!	AAAACATATTTCTCTAAACA+TGG	+	Chr1:80219290-80219309	None:intergenic	20.0%
!!	GAAAATATTAATTTAGCACT+TGG	+	Chr1:80219494-80219513	None:intergenic	20.0%
!!	GATAATAATGAAAAACCTAA+AGG	+	Chr1:80219103-80219122	None:intergenic	20.0%
!!	GCTAATTATGAACATATAAT+TGG	+	Chr1:80219809-80219828	None:intergenic	20.0%
!!	TATAGTTACATAGAATAAAG+TGG	-	Chr1:80218307-80218326	MsG0180004602.01.T01:three_prime_UTR	20.0%
!!	TTGAATAGCAATAATGAATT+TGG	-	Chr1:80219002-80219021	MsG0180004602.01.T01:intron	20.0%
!!!	AGGTTTCTTTTTATTTTGAA+TGG	-	Chr1:80218227-80218246	MsG0180004602.01.T01:three_prime_UTR	20.0%
!!!	ATTATTTTTTTCATTGCTGA+TGG	-	Chr1:80219597-80219616	MsG0180004602.01.T01:intron	20.0%
!!!	ATTGCATTTTTTTTATTAGG+GGG	-	Chr1:80219403-80219422	MsG0180004602.01.T01:intron	20.0%
!!!	ATTTTTAAGTTCTAATTAGG+AGG	-	Chr1:80221266-80221285	MsG0180004602.01.T01:intron	20.0%
!!!	CAAAAATGCATTTTTTTGTT+AGG	+	Chr1:80219253-80219272	None:intergenic	20.0%
!!!	CTTTTTTTGTGGATAAATAA+AGG	-	Chr1:80220307-80220326	MsG0180004602.01.T01:intron	20.0%
!!!	GTTTAGAGAAATATGTTTTT+TGG	-	Chr1:80219291-80219310	MsG0180004602.01.T01:intron	20.0%
!!!	TTCTTGTTTTAACCAAATAT+AGG	-	Chr1:80219026-80219045	MsG0180004602.01.T01:CDS	20.0%
!!!	TTTTTTTCCTTGTTTTTCAT+AGG	-	Chr1:80218976-80218995	MsG0180004602.01.T01:intron	20.0%
!!!	TTTTTTTTTTTGAATTTGGC+TGG	-	Chr1:80218347-80218366	MsG0180004602.01.T01:three_prime_UTR	20.0%
!	AAAGTACAAGAAACCTAATT+GGG	+	Chr1:80218959-80218978	None:intergenic	25.0%
!	AATATTAATTTAGCACTTGG+TGG	+	Chr1:80219491-80219510	None:intergenic	25.0%
!	ACAGTATAGTTTGGAAATTA+GGG	-	Chr1:80219373-80219392	MsG0180004602.01.T01:intron	25.0%
!	AGAATCCTTAATCAAGTATT+AGG	+	Chr1:80219541-80219560	None:intergenic	25.0%
!	GACTAAAATCATAACTTCAT+AGG	+	Chr1:80221329-80221348	None:intergenic	25.0%
!	GATGAAATACATACAATTGT+AGG	+	Chr1:80220244-80220263	None:intergenic	25.0%
!	GATTAATTACTCAATCAGTT+AGG	+	Chr1:80221038-80221057	None:intergenic	25.0%
!	TCAAAATCCTATGAAAAACA+AGG	+	Chr1:80218986-80219005	None:intergenic	25.0%
!	TCACATTACACAATAAACTT+AGG	+	Chr1:80219831-80219850	None:intergenic	25.0%
!!	AAAAGTACAAGAAACCTAAT+TGG	+	Chr1:80218960-80218979	None:intergenic	25.0%
!!	GCAACTTTTTGTAAAGATAA+GGG	+	Chr1:80219317-80219336	None:intergenic	25.0%
!!	TGCAACTTTTTGTAAAGATA+AGG	+	Chr1:80219318-80219337	None:intergenic	25.0%
!!!	AAATGCATTTTTTTGTTAGG+AGG	+	Chr1:80219250-80219269	None:intergenic	25.0%
!!!	AATCAATGTTACAGTTTTGT+TGG	-	Chr1:80221054-80221073	MsG0180004602.01.T01:intron	25.0%
!!!	ATCAATGTTACAGTTTTGTT+GGG	-	Chr1:80221055-80221074	MsG0180004602.01.T01:intron	25.0%
!!!	TGTAATGTGATTTTTTGCAT+GGG	-	Chr1:80219841-80219860	MsG0180004602.01.T01:intron	25.0%
	AAATGCTTCTTATCAAAAGC+TGG	+	Chr1:80220106-80220125	None:intergenic	30.0%
	AAATTGAGAATGGAATGCTT+TGG	-	Chr1:80220512-80220531	MsG0180004602.01.T01:intron	30.0%
	AATTGAGAATGGAATGCTTT+GGG	-	Chr1:80220513-80220532	MsG0180004602.01.T01:intron	30.0%
	AATTGCTTCTTATCAAAAGC+TGG	+	Chr1:80219993-80220012	None:intergenic	30.0%
	AGGTTAGGTAATCATGTTTA+AGG	+	Chr1:80219521-80219540	None:intergenic	30.0%
	CAATGTTGCTAACTTTACTT+TGG	-	Chr1:80220437-80220456	MsG0180004602.01.T01:intron	30.0%
	CACAGTATAGTTTGGAAATT+AGG	-	Chr1:80219372-80219391	MsG0180004602.01.T01:intron	30.0%
	CACATCACACAATAAACTTT+AGG	+	Chr1:80220643-80220662	None:intergenic	30.0%
	CCTAACCTAATACTTGATTA+AGG	-	Chr1:80219533-80219552	MsG0180004602.01.T01:intron	30.0%
	CCTTAATCAAGTATTAGGTT+AGG	+	Chr1:80219536-80219555	None:intergenic	30.0%
	CTAGACAAAAGTAATTAGCA+CGG	-	Chr1:80218274-80218293	MsG0180004602.01.T01:three_prime_UTR	30.0%
	CTCTAAACATGGCAAAATTA+GGG	+	Chr1:80219279-80219298	None:intergenic	30.0%
	GAAGATTATATTGCGATAGA+AGG	+	Chr1:80218826-80218845	None:intergenic	30.0%
	GATGAAACACATACAATTGT+AGG	+	Chr1:80220954-80220973	None:intergenic	30.0%
	GGTGGTAAAGTCATAATTTA+AGG	+	Chr1:80219473-80219492	None:intergenic	30.0%
	GGTTAGGTAATCATGTTTAA+GGG	+	Chr1:80219520-80219539	None:intergenic	30.0%
	GTAGTATACCTCAATTTGTA+AGG	+	Chr1:80218529-80218548	None:intergenic	30.0%
	GTTAGGTAATCATGTTTAAG+GGG	+	Chr1:80219519-80219538	None:intergenic	30.0%
	TAAGCAAAGTAGAGAAAAGT+TGG	+	Chr1:80221141-80221160	None:intergenic	30.0%
	TCTAAACATGGCAAAATTAG+GGG	+	Chr1:80219278-80219297	None:intergenic	30.0%
	TCTCTAAACATGGCAAAATT+AGG	+	Chr1:80219280-80219299	None:intergenic	30.0%
	TTGATATTGTTGACACTTTC+AGG	-	Chr1:80220774-80220793	MsG0180004602.01.T01:intron	30.0%
!	ACTTTTCTCTACTTTGCTTA+TGG	-	Chr1:80221141-80221160	MsG0180004602.01.T01:intron	30.0%
!	GTTTTACTTTACACCCAATT+AGG	-	Chr1:80218943-80218962	MsG0180004602.01.T01:intron	30.0%
!	TCACTATCTTTCATCCTTTT+TGG	-	Chr1:80220972-80220991	MsG0180004602.01.T01:intron	30.0%
!!	AATTGTAGGTCTTTGAGTTT+TGG	+	Chr1:80220940-80220959	None:intergenic	30.0%
!!	ATTGTAGGTCTTTGAGTTTT+GGG	+	Chr1:80220939-80220958	None:intergenic	30.0%
!!	TTTAAGGCTTAAATGCCTTT+TGG	+	Chr1:80219457-80219476	None:intergenic	30.0%
!!!	GTGTAATGTGATTTTTTGCA+TGG	-	Chr1:80219840-80219859	MsG0180004602.01.T01:intron	30.0%
!!!	TCAATGTTACAGTTTTGTTG+GGG	-	Chr1:80221056-80221075	MsG0180004602.01.T01:intron	30.0%
!!!	TTCTCAGTTCTCTTTTTTTG+TGG	-	Chr1:80220296-80220315	MsG0180004602.01.T01:intron	30.0%
!!!	TTGTTTTTGTTTGTGACAGA+GGG	-	Chr1:80219165-80219184	MsG0180004602.01.T01:intron	30.0%
	AAATTCAGACGGAATGCTTT+GGG	-	Chr1:80219704-80219723	MsG0180004602.01.T01:intron	35.0%
	AAGGTACACCTTACAAATTG+AGG	-	Chr1:80218518-80218537	MsG0180004602.01.T01:intron	35.0%
	AATTGTAGGTCCTTGAGTTT+AGG	+	Chr1:80220230-80220249	None:intergenic	35.0%
	ACTCAATCACCAACAAATCT+CGG	-	Chr1:80218453-80218472	MsG0180004602.01.T01:CDS	35.0%
	AGTGAGATCAAGTAGAATAG+AGG	+	Chr1:80218763-80218782	None:intergenic	35.0%
	ATAACGAAGAGTTCAAGTGA+TGG	+	Chr1:80218719-80218738	None:intergenic	35.0%
	ATTGTAGGTCCTTGAGTTTA+GGG	+	Chr1:80220229-80220248	None:intergenic	35.0%
	CAACAATATCACCACTTTGA+CGG	+	Chr1:80219947-80219966	None:intergenic	35.0%
	CATTCTCAATTTCCTTGTAG+GGG	+	Chr1:80220504-80220523	None:intergenic	35.0%
	CCATTCTCAATTTCCTTGTA+GGG	+	Chr1:80220505-80220524	None:intergenic	35.0%
	CTAAACATGGCAAAATTAGG+GGG	+	Chr1:80219277-80219296	None:intergenic	35.0%
	CTTTGCTGATGAATTTCTGT+AGG	-	Chr1:80219647-80219666	MsG0180004602.01.T01:intron	35.0%
	GTGATATTGTTGACACTTTC+AGG	-	Chr1:80219955-80219974	MsG0180004602.01.T01:intron	35.0%
	GTGATGTGATTATTTGCAGT+GGG	-	Chr1:80220655-80220674	MsG0180004602.01.T01:intron	35.0%
	TCCATTCTCAATTTCCTTGT+AGG	+	Chr1:80220506-80220525	None:intergenic	35.0%
	TGTGATGTGATTATTTGCAG+TGG	-	Chr1:80220654-80220673	MsG0180004602.01.T01:intron	35.0%
	TGTTCTGTGGTTTAACCTTT+AGG	-	Chr1:80219085-80219104	MsG0180004602.01.T01:intron	35.0%
	TGTTTACCAGGATCTTCTTA+CGG	-	Chr1:80218892-80218911	MsG0180004602.01.T01:intron	35.0%
	TTGGCTGGATAGTTTGAATA+AGG	-	Chr1:80218362-80218381	MsG0180004602.01.T01:exon	35.0%
!	AGTTTTCTGTTTGTGTTCTG+TGG	-	Chr1:80219072-80219091	MsG0180004602.01.T01:intron	35.0%
!	CTTTGGCGATGAATTTTTCT+AGG	-	Chr1:80220454-80220473	MsG0180004602.01.T01:intron	35.0%
!!	AAATGTTAACTTGTGCCCTT+GGG	-	Chr1:80220331-80220350	MsG0180004602.01.T01:intron	35.0%
!!	TGAAACAACTCTTGCTTTTC+TGG	+	Chr1:80220063-80220082	None:intergenic	35.0%
!!	TTTTTGCATGGGTTTGTTCA+AGG	-	Chr1:80219852-80219871	MsG0180004602.01.T01:intron	35.0%
!!!	GCAATTATGACCCCTTTTTT+GGG	-	Chr1:80219335-80219354	MsG0180004602.01.T01:intron	35.0%
!!!	GTTGTTTTTGTTTGTGACAG+AGG	-	Chr1:80219164-80219183	MsG0180004602.01.T01:intron	35.0%
!!!	TGCAATTATGACCCCTTTTT+TGG	-	Chr1:80219334-80219353	MsG0180004602.01.T01:intron	35.0%
	AGGAAGAGAGAAGCAAAAGA+AGG	+	Chr1:80218806-80218825	None:intergenic	40.0%
	ATACGAGATCCGAGATTTGT+TGG	+	Chr1:80218465-80218484	None:intergenic	40.0%
	ATTGCTACGATGGCAAACAT+AGG	-	Chr1:80219429-80219448	MsG0180004602.01.T01:intron	40.0%
	ATTGCTACGATGGCAAACAT+AGG	+	Chr1:80219448-80219429	None:intergenic	40.0%
	CCCTACAAGGAAATTGAGAA+TGG	-	Chr1:80220502-80220521	MsG0180004602.01.T01:intron	40.0%
	CCTTGTAGTAAGCAAACACA+AGG	+	Chr1:80221104-80221123	None:intergenic	40.0%
	CCTTGTGTTTGCTTACTACA+AGG	-	Chr1:80221101-80221120	MsG0180004602.01.T01:intron	40.0%
	CTACTTTGCTTATGGCTTGA+AGG	-	Chr1:80221149-80221168	MsG0180004602.01.T01:intron	40.0%
	CTTCTTAACTTATGCCCCAA+GGG	+	Chr1:80220349-80220368	None:intergenic	40.0%
	CTTGAACAACTCTTGCTTTC+TGG	+	Chr1:80220174-80220193	None:intergenic	40.0%
	GAAATTCAGACGGAATGCTT+TGG	-	Chr1:80219703-80219722	MsG0180004602.01.T01:intron	40.0%
	GAGGTTCAAAATTGCTACGA+TGG	+	Chr1:80219231-80219250	None:intergenic	40.0%
	GTAGAGAAAAGTTGGATCAG+TGG	+	Chr1:80221133-80221152	None:intergenic	40.0%
	GTGACAGAGGGTTACAATTT+AGG	-	Chr1:80219177-80219196	MsG0180004602.01.T01:intron	40.0%
	GTGTTTGCTTACTACAAGGA+TGG	-	Chr1:80221105-80221124	MsG0180004602.01.T01:intron	40.0%
	GTTTACCAGGATCTTCTTAC+GGG	-	Chr1:80218893-80218912	MsG0180004602.01.T01:intron	40.0%
	TCCGTCTGAATTTCCTTGTA+GGG	+	Chr1:80219697-80219716	None:intergenic	40.0%
	TCTTCTTAACTTATGCCCCA+AGG	+	Chr1:80220350-80220369	None:intergenic	40.0%
	TTCCGTCTGAATTTCCTTGT+AGG	+	Chr1:80219698-80219717	None:intergenic	40.0%
	TTGCTACGATGGCAAACATA+GGG	-	Chr1:80219430-80219449	MsG0180004602.01.T01:intron	40.0%
	TTGCTACGATGGCAAACATA+GGG	+	Chr1:80219449-80219430	None:intergenic	40.0%
	TTGTTTCACTTTCAGGCTTC+AGG	-	Chr1:80220075-80220094	MsG0180004602.01.T01:intron	40.0%
!	GCAAGAGTTGTTTCACTTTC+AGG	-	Chr1:80220068-80220087	MsG0180004602.01.T01:intron	40.0%
!!	AATGTTAACTTGTGCCCTTG+GGG	-	Chr1:80220332-80220351	MsG0180004602.01.T01:intron	40.0%
!!	GAAATGTTAACTTGTGCCCT+TGG	-	Chr1:80220330-80220349	MsG0180004602.01.T01:intron	40.0%
!!	TATTTGCAGTGGGTTGTTCA+AGG	-	Chr1:80220665-80220684	MsG0180004602.01.T01:intron	40.0%
	AAGGAGCAGTGGATGAACAT+TGG	-	Chr1:80219871-80219890	MsG0180004602.01.T01:intron	45.0%
	AGATCCTGGTAAACAAGCAC+AGG	+	Chr1:80218887-80218906	None:intergenic	45.0%
	CAAACTGTCAATCGGATGGA+AGG	-	Chr1:80218207-80218226	MsG0180004602.01.T01:three_prime_UTR	45.0%
	CCCCTACAAGGAAATTCAGA+CGG	-	Chr1:80219693-80219712	MsG0180004602.01.T01:intron	45.0%
	CCGTCTGAATTTCCTTGTAG+GGG	+	Chr1:80219696-80219715	None:intergenic	45.0%
	CGAAGAGTTCAAGTGATGGT+AGG	+	Chr1:80218715-80218734	None:intergenic	45.0%
	CGATGATCAAGCTGTCAAAG+TGG	-	Chr1:80220751-80220770	MsG0180004602.01.T01:intron	45.0%
	GGAGCAGTGGATGTGAATAT+TGG	-	Chr1:80220686-80220705	MsG0180004602.01.T01:intron	45.0%
	GTTCCTTCTCCCTAAACTCA+AGG	-	Chr1:80220217-80220236	MsG0180004602.01.T01:intron	45.0%
	GTTTACCCGTAAGAAGATCC+TGG	+	Chr1:80218901-80218920	None:intergenic	45.0%
	TGCTACGATGGCAAACATAG+GGG	-	Chr1:80219431-80219450	MsG0180004602.01.T01:intron	45.0%
	TGGTAAACAAGCACAGGTTG+CGG	+	Chr1:80218881-80218900	None:intergenic	45.0%
	TGTTGACACTTTCAGGCTTC+AGG	-	Chr1:80219962-80219981	MsG0180004602.01.T01:intron	45.0%
!!	GAATGGAATGCTTTGGGAAG+TGG	-	Chr1:80220519-80220538	MsG0180004602.01.T01:intron	45.0%
!!!	GGTCTTTGAGTTTTGGGAGA+AGG	+	Chr1:80220933-80220952	None:intergenic	45.0%
!!	AATTCTATTAAATTAAAATT+TGG	+	Chr1:80219125-80219144	None:intergenic	5.0%
!!	ATTCAAAAAAAAAAATTTAT+AGG	+	Chr1:80218342-80218361	None:intergenic	5.0%
!!	ATTTATTTATGAAATATATT+TGG	+	Chr1:80220617-80220636	None:intergenic	5.0%
!!	TTCAAAAAAAAAAATTTATA+GGG	+	Chr1:80218341-80218360	None:intergenic	5.0%
!!!	TAAATTTTTTTTTTTGAATT+TGG	-	Chr1:80218343-80218362	MsG0180004602.01.T01:three_prime_UTR	5.0%
!!!	TTCTTTTTTATTTTATTTTA+TGG	+	Chr1:80218492-80218511	None:intergenic	5.0%
	CCGCCACATGTCCCAAAAAA+GGG	+	Chr1:80219349-80219368	None:intergenic	50.0%
	CGCCACATGTCCCAAAAAAG+GGG	+	Chr1:80219348-80219367	None:intergenic	50.0%
	CGGTTGGGCAAACTGTCAAT+CGG	-	Chr1:80218199-80218218	MsG0180004602.01.T01:three_prime_UTR	50.0%
	CTACGATGGCAAACATAGGG+TGG	+	Chr1:80219452-80219433	None:intergenic	50.0%
	CTCTGACTCATTCCCCTACA+AGG	-	Chr1:80219681-80219700	MsG0180004602.01.T01:intron	50.0%
	GCAACCTGTGCTTGTTTACC+AGG	-	Chr1:80218880-80218899	MsG0180004602.01.T01:intron	50.0%
	GGCGGCTTCACAGTATAGTT+TGG	-	Chr1:80219364-80219383	MsG0180004602.01.T01:intron	50.0%
	GGGAAGTGGAAGGAAAGGTT+TGG	-	Chr1:80220533-80220552	MsG0180004602.01.T01:intron	50.0%
	GGTCCTTGAGTTTAGGGAGA+AGG	+	Chr1:80220223-80220242	None:intergenic	50.0%
	GGTGCTAATCCTTCTGCTGA+GGG	-	Chr1:80220707-80220726	MsG0180004602.01.T01:intron	50.0%
	GTTGATGTCAGCCGTCAAAG+TGG	-	Chr1:80219933-80219952	MsG0180004602.01.T01:intron	50.0%
	TAGGGGGTCAATTGCTACGA+TGG	-	Chr1:80219419-80219438	MsG0180004602.01.T01:intron	50.0%
	TGGCAAACATAGGGGCCAAA+AGG	-	Chr1:80219439-80219458	MsG0180004602.01.T01:intron	50.0%
	TGGGAAGTGGAAGGAAGGTT+TGG	-	Chr1:80219723-80219742	MsG0180004602.01.T01:intron	50.0%
	TGGGCAAACTGTCAATCGGA+TGG	-	Chr1:80218203-80218222	MsG0180004602.01.T01:three_prime_UTR	50.0%
!	TGGGTTTGTTCAAGGAGCAG+TGG	-	Chr1:80219860-80219879	MsG0180004602.01.T01:intron	50.0%
!	TGGTGCTAACCTTCTGCAGA+GGG	-	Chr1:80219891-80219910	MsG0180004602.01.T01:intron	50.0%
!	TGGTGCTAATCCTTCTGCTG+AGG	-	Chr1:80220706-80220725	MsG0180004602.01.T01:intron	50.0%
!!	AGACGGAATGCTTTGGGAAG+TGG	-	Chr1:80219710-80219729	MsG0180004602.01.T01:intron	50.0%
!!	GCTTTGGGAAGTGGAAGGAA+AGG	-	Chr1:80219719-80219738	MsG0180004602.01.T01:intron	50.0%
!!	GGAATGCTTTGGGAAGTGGA+AGG	-	Chr1:80219714-80219733	MsG0180004602.01.T01:intron	50.0%
!!	TGCTTTGGGAAGTGGAAGGA+AGG	-	Chr1:80219718-80219737	MsG0180004602.01.T01:intron	50.0%
!!	TTGGTGCTAACCTTCTGCAG+AGG	-	Chr1:80219890-80219909	MsG0180004602.01.T01:intron	50.0%
!!!	CCCTTTTTTGGGACATGTGG+CGG	-	Chr1:80219346-80219365	MsG0180004602.01.T01:intron	50.0%
!!!	GACCCCTTTTTTGGGACATG+TGG	-	Chr1:80219343-80219362	MsG0180004602.01.T01:intron	50.0%
	GCCGCCACATGTCCCAAAAA+AGG	+	Chr1:80219350-80219369	None:intergenic	55.0%
	GCTAATCCTTCTGCTGAGGG+TGG	-	Chr1:80220710-80220729	MsG0180004602.01.T01:intron	55.0%
	TGCTAACCTTCTGCAGAGGG+TGG	-	Chr1:80219894-80219913	MsG0180004602.01.T01:intron	55.0%
!	GGGGAGAGCATGCATGATGA+TGG	-	Chr1:80221075-80221094	MsG0180004602.01.T01:intron	55.0%
!	GTGGGTTGTTCAAGGAGCAG+TGG	-	Chr1:80220673-80220692	MsG0180004602.01.T01:intron	55.0%
	GAGGGTGGAGACGAGGATGA+CGG	-	Chr1:80219909-80219928	MsG0180004602.01.T01:intron	60.0%
	GAGGGTGGAGACGAGGATGA+TGG	-	Chr1:80219909-80219928	MsG0180004602.01.T01:intron	60.0%
	TCGTCTCCACCCTCAGCAGA+AGG	+	Chr1:80220719-80220738	None:intergenic	60.0%
	TCGTCTCCACCCTCTGCAGA+AGG	+	Chr1:80219903-80219922	None:intergenic	60.0%
	TTCTGCAGAGGGTGGAGACG+AGG	-	Chr1:80219902-80219921	MsG0180004602.01.T01:intron	60.0%
	TTCTGCTGAGGGTGGAGACG+AGG	-	Chr1:80220718-80220737	MsG0180004602.01.T01:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	80218193	80221366	80218193	ID=MsG0180004602.01;Name=MsG0180004602.01
Chr1	mRNA	80218193	80221366	80218193	ID=MsG0180004602.01.T01;Parent=MsG0180004602.01;Name=MsG0180004602.01.T01;_AED=0.49;_eAED=0.55;_QI=0\|0.33\|0.5\|1\|1\|1\|4\|181\|190
Chr1	exon	80218193	80218491	80218193	ID=MsG0180004602.01.T01:exon:45864;Parent=MsG0180004602.01.T01
Chr1	exon	80218596	80218885	80218596	ID=MsG0180004602.01.T01:exon:45863;Parent=MsG0180004602.01.T01
Chr1	exon	80219010	80219083	80219010	ID=MsG0180004602.01.T01:exon:45862;Parent=MsG0180004602.01.T01
Chr1	exon	80221276	80221366	80221276	ID=MsG0180004602.01.T01:exon:45861;Parent=MsG0180004602.01.T01
Chr1	CDS	80221276	80221366	80221276	ID=MsG0180004602.01.T01:cds;Parent=MsG0180004602.01.T01
Chr1	CDS	80219010	80219083	80219010	ID=MsG0180004602.01.T01:cds;Parent=MsG0180004602.01.T01
Chr1	CDS	80218596	80218885	80218596	ID=MsG0180004602.01.T01:cds;Parent=MsG0180004602.01.T01
Chr1	CDS	80218374	80218491	80218374	ID=MsG0180004602.01.T01:cds;Parent=MsG0180004602.01.T01
Chr1	three_prime_UTR	80218193	80218373	80218193	ID=MsG0180004602.01.T01:three_prime_utr;Parent=MsG0180004602.01.T01

Gene Sequence

>MsG0180004602.01.T01

ATGGATCGGTTGGGCAAACTGTCAATCGGATGGAAGGTTTCTTTTTATTTTGAATGGAAGCATAGAGATATTCTCATGAGACTAGACAAAAGTGATGAGCTTCTCTCTGACTCATTCCCCTACAAGGAAATTGAGAATGGAATGCTTTGGGAAGTGGAAGGAAAGTGGGTTGTTCAAGGAGCAGTGGATGTGAATATTGGTGCTAATCCTTCTGCTGAGGGTGGAGACGAGGATGATGGTGTCGATGATCAAGCTGTCAAAGTGGTTGATATTGTTGACACTTTCAGGCTTCAGGAGCAACCAGCTTTTGATAAGAAGCAATTTGTTACTTATATGAAGAGATATATTAAGTTGCTGACATCTAAATTAGAGCCAGAAAGCAAGAGTTGTTCAAGAAGCACATTGAAGCAGCAACTAAGTTCCTTCTCCCAAAACTCAAAGACCTACAATTGTATTTTTGTTGGGGAGAGCATGCATGATGATGGAAGCCTTGTGTTTGCTTACTACAAGGATGGTGCCACTGATCCAACTTTTCTCTACTTTGCTTATGGCTTGAAGGAAATCAAGTGTTAA

Protein sequence

>MsG0180004602.01.T01

MDRLGKLSIGWKVSFYFEWKHRDILMRLDKSDELLSDSFPYKEIENGMLWEVEGKWVVQGAVDVNIGANPSAEGGDEDDGVDDQAVKVVDIVDTFRLQEQPAFDKKQFVTYMKRYIKLLTSKLEPESKSCSRSTLKQQLSSFSQNSKTYNCIFVGESMHDDGSLVFAYYKDGATDPTFLYFAYGLKEIKC*