AlfalfaGEDB | MsG0880044906.01

M. sativa cultivar ZhongmuNo.1 / MsG0880044906.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044906.01.T01	KEH19919.1	97.122	139	4	0	1	139	100	238	3.50E-95	284

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044906.01.T01	A0A0B6VQ48	64.286	140	49	1	1	139	183	322	1.17E-62	197

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044906.01.T01	A0A072TR03	97.122	139	4	0	1	139	100	238	1.67e-95	284

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005729.01	MsG0880044906.01	0.809075	2.263076e-50	1.315934e-47
MsG0180005731.01	MsG0880044906.01	0.806115	9.620980e-50	5.179239e-47
MsG0180006054.01	MsG0880044906.01	0.810209	1.291592e-50	7.738389e-48
MsG0280007118.01	MsG0880044906.01	0.815394	9.454802e-52	6.510777e-49
MsG0380015533.01	MsG0880044906.01	0.808606	2.852132e-50	1.637866e-47
MsG0380016285.01	MsG0880044906.01	0.800995	1.109522e-48	5.240188e-46
MsG0380017202.01	MsG0880044906.01	0.804395	2.204932e-49	1.135591e-46
MsG0380017293.01	MsG0880044906.01	0.813337	2.693227e-51	1.753999e-48
MsG0480019313.01	MsG0880044906.01	0.801300	9.611541e-49	4.574184e-46
MsG0480020283.01	MsG0880044906.01	0.801213	1.001339e-48	4.754950e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044906.01.T01	MTR_8g062110	97.122	139	4	0	1	139	100	238	4.24e-99	284
MsG0880044906.01.T01	MTR_8g062110	97.122	139	4	0	1	139	186	324	8.28e-98	284
MsG0880044906.01.T01	MTR_8g062110	97.122	139	4	0	1	139	195	333	8.98e-98	284
MsG0880044906.01.T01	MTR_8g062440	87.770	139	17	0	1	139	185	323	1.78e-86	255
MsG0880044906.01.T01	MTR_8g062440	87.770	139	17	0	1	139	186	324	2.24e-86	255
MsG0880044906.01.T01	MTR_3g005170	71.429	140	39	1	1	139	156	295	9.47e-70	212
MsG0880044906.01.T01	MTR_3g005170	71.429	140	39	1	1	139	187	326	2.79e-69	211
MsG0880044906.01.T01	MTR_0685s0030	69.065	139	42	1	2	139	26	164	4.85e-68	203
MsG0880044906.01.T01	MTR_3g005210	72.143	140	38	1	1	139	183	322	7.00e-68	208
MsG0880044906.01.T01	MTR_4g077100	69.065	139	42	1	2	139	189	327	5.23e-66	203

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880044906.01.T01	AT5G19440	62.857	140	51	1	1	139	187	326	2.65e-60	189
MsG0880044906.01.T01	AT1G51410	62.143	140	52	1	1	139	186	325	9.25e-60	187
MsG0880044906.01.T01	AT1G09480	45.926	135	72	1	1	134	185	319	7.03e-32	115
MsG0880044906.01.T01	AT1G09490	45.185	135	73	1	1	134	154	288	7.97e-32	114
MsG0880044906.01.T01	AT1G09510	45.652	138	74	1	1	137	185	322	1.56e-31	114
MsG0880044906.01.T01	AT1G09480	45.926	135	72	1	1	134	232	366	1.61e-31	115
MsG0880044906.01.T01	AT1G09490	45.185	135	73	1	1	134	185	319	1.80e-31	114
MsG0880044906.01.T01	AT1G09500	43.571	140	76	3	1	137	152	291	1.75e-29	108
MsG0880044906.01.T01	AT1G66800	45.926	135	72	1	1	134	181	315	1.80e-29	109
MsG0880044906.01.T01	AT1G09500	43.571	140	76	3	1	137	186	325	3.45e-29	108

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Find 59 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATTATGAGTGGGGA+AGG	0.549887	8:+51216349	MsG0880044906.01.T01:five_prime_UTR
AAAATATTATGAAACCACGC+TGG	0.641690	8:-51216435	None:intergenic
AAAATGTTATTGTACTAAGT+GGG	0.489408	8:-51218893	None:intergenic
AAATGAAAACAGCATTGACA+TGG	0.650659	8:+51216559	MsG0880044906.01.T01:exon
AAATGTTATTGTACTAAGTG+GGG	0.573815	8:-51218892	None:intergenic
AAGGAAAAGGCTAAGAGTTT+GGG	0.368159	8:+51218716	MsG0880044906.01.T01:CDS
AAGGGCAGTCCAAACTTTGA+AGG	0.481124	8:+51216317	MsG0880044906.01.T01:five_prime_UTR
AAGTAGTCGTAGAAGCTCAA+GGG	0.613557	8:+51216299	MsG0880044906.01.T01:five_prime_UTR
AATGTTATTGTACTAAGTGG+GGG	0.602107	8:-51218891	None:intergenic
ACTTTCGAAGACTTTGGCTG+AGG	0.557625	8:+51216517	MsG0880044906.01.T01:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATATTATGAAACCACGC+TGG	-	Chr8:51216438-51216457	None:intergenic	30.0%
AAGAGAAAAAGGATTATGAG+TGG	+	Chr8:51216343-51216362	MsG0880044906.01.T01:five_prime_UTR	30.0%
AAGAGATGAATGAAACTTGT+TGG	+	Chr8:51218405-51218424	MsG0880044906.01.T01:intron	30.0%
AAGCAAAGAACTAAAAACAG+CGG	-	Chr8:51218087-51218106	None:intergenic	30.0%
AATGTTATTGTACTAAGTGG+GGG	-	Chr8:51218894-51218913	None:intergenic	30.0%
AGAGAAAAAGGATTATGAGT+GGG	+	Chr8:51216344-51216363	MsG0880044906.01.T01:five_prime_UTR	30.0%
ATAGAAGTAGTCAAGAATGT+TGG	-	Chr8:51216474-51216493	None:intergenic	30.0%
ATCTGATATGTTGGCATATA+CGG	-	Chr8:51218692-51218711	None:intergenic	30.0%
GAATTGTCTAAGCTCTATTT+AGG	-	Chr8:51218337-51218356	None:intergenic	30.0%
GTCTCTAATATGTCATTGAA+TGG	+	Chr8:51217682-51217701	MsG0880044906.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	51216179	51218966	51216179	ID=MsG0880044906.01;Name=MsG0880044906.01
Chr8	mRNA	51216179	51218966	51216179	ID=MsG0880044906.01.T01;Parent=MsG0880044906.01;Name=MsG0880044906.01.T01;_AED=0.38;_eAED=0.38;_QI=399\|1\|1\|1\|1\|1\|3\|149\|139
Chr8	exon	51216179	51216668	51216179	ID=MsG0880044906.01.T01:exon:21755;Parent=MsG0880044906.01.T01
Chr8	exon	51217848	51218031	51217848	ID=MsG0880044906.01.T01:exon:21756;Parent=MsG0880044906.01.T01
Chr8	exon	51218673	51218966	51218673	ID=MsG0880044906.01.T01:exon:21757;Parent=MsG0880044906.01.T01
Chr8	five_prime_UTR	51216179	51216577	51216179	ID=MsG0880044906.01.T01:five_prime_utr;Parent=MsG0880044906.01.T01
Chr8	CDS	51216578	51216668	51216578	ID=MsG0880044906.01.T01:cds;Parent=MsG0880044906.01.T01
Chr8	CDS	51217848	51218031	51217848	ID=MsG0880044906.01.T01:cds;Parent=MsG0880044906.01.T01
Chr8	CDS	51218673	51218817	51218673	ID=MsG0880044906.01.T01:cds;Parent=MsG0880044906.01.T01
Chr8	three_prime_UTR	51218818	51218966	51218818	ID=MsG0880044906.01.T01:three_prime_utr;Parent=MsG0880044906.01.T01

Gene Sequence

>MsG0880044906.01.T01

ATGGTTGCTATTAACCCAACAATGGTGGCAGGACCTCTCTTACAACCAGAGCTTAACGGAAGTGTTGAACCAATTTTAAACCTAATAAATGGTATGCCTTTTCCAAATAAAGCATATGGATGGTGCAATGTGAAAGATGTTGCTAACGCCCATATTCTGGCATATGAGACTGCTTCAGCTAGTGGAAGATATTGTTTGGCTGAGAGAGTGGTACACTATTCAGAACTTGCTATGATTTTACGTGATCTGTACCCAACTTTACAAATTTCAGACAAGTGTGAAGATGACGGGCCGTATATGCCAACATATCAGATTTCTAAGGAAAAGGCTAAGAGTTTGGGAATCGAGTTTACTCCTTTGGAAGTCAGCCTCAAGGAGACTGTGGAAAGCTTCAGAGAGAAAAAGATCGTCAACTTTTAA

Protein sequence

>MsG0880044906.01.T01

MVAINPTMVAGPLLQPELNGSVEPILNLINGMPFPNKAYGWCNVKDVANAHILAYETASASGRYCLAERVVHYSELAMILRDLYPTLQISDKCEDDGPYMPTYQISKEKAKSLGIEFTPLEVSLKETVESFREKKIVNF*