AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044906.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044906.01.T01 MTR_8g062110 97.122 139 4 0 1 139 100 238 4.24e-99 284
MsG0880044906.01.T01 MTR_8g062110 97.122 139 4 0 1 139 186 324 8.28e-98 284
MsG0880044906.01.T01 MTR_8g062110 97.122 139 4 0 1 139 195 333 8.98e-98 284
MsG0880044906.01.T01 MTR_8g062440 87.770 139 17 0 1 139 185 323 1.78e-86 255
MsG0880044906.01.T01 MTR_8g062440 87.770 139 17 0 1 139 186 324 2.24e-86 255
MsG0880044906.01.T01 MTR_3g005170 71.429 140 39 1 1 139 156 295 9.47e-70 212
MsG0880044906.01.T01 MTR_3g005170 71.429 140 39 1 1 139 187 326 2.79e-69 211
MsG0880044906.01.T01 MTR_0685s0030 69.065 139 42 1 2 139 26 164 4.85e-68 203
MsG0880044906.01.T01 MTR_3g005210 72.143 140 38 1 1 139 183 322 7.00e-68 208
MsG0880044906.01.T01 MTR_4g077100 69.065 139 42 1 2 139 189 327 5.23e-66 203
MsG0880044906.01.T01 MTR_4g077130 69.784 139 41 1 2 139 187 325 8.88e-65 200
MsG0880044906.01.T01 MTR_8g062110 97.826 92 2 0 1 92 100 191 2.95e-63 192
MsG0880044906.01.T01 MTR_8g062110 97.826 92 2 0 1 92 186 277 3.37e-62 192
MsG0880044906.01.T01 MTR_8g062110 97.826 92 2 0 1 92 186 277 4.16e-62 192
MsG0880044906.01.T01 MTR_8g062440 86.957 92 12 0 1 92 185 276 8.71e-51 164
MsG0880044906.01.T01 MTR_3g005170 70.968 93 26 1 1 92 187 279 5.99e-41 137
MsG0880044906.01.T01 MTR_0685s0030 69.565 92 27 1 2 92 26 117 1.45e-40 132
MsG0880044906.01.T01 MTR_4g077100 69.565 92 27 1 2 92 189 280 5.58e-39 132
MsG0880044906.01.T01 MTR_4g006940 44.094 127 68 2 11 134 197 323 9.66e-27 102
MsG0880044906.01.T01 MTR_2g104960 43.307 127 69 2 11 134 200 326 1.72e-24 96.3
MsG0880044906.01.T01 MTR_5g072620 32.143 140 93 1 1 138 181 320 1.96e-21 87.8
MsG0880044906.01.T01 MTR_4g077150 69.643 56 17 0 34 89 90 145 2.01e-21 84.7
MsG0880044906.01.T01 MTR_8g062490 60.870 69 27 0 25 93 49 117 1.96e-20 81.3
MsG0880044906.01.T01 MTR_3g031650 32.374 139 92 1 1 137 181 319 7.00e-20 83.6
MsG0880044906.01.T01 MTR_5g056600 32.847 137 89 2 1 134 180 316 1.67e-19 82.8
MsG0880044906.01.T01 MTR_2g028620 33.088 136 89 1 1 134 188 323 1.12e-18 80.5
MsG0880044906.01.T01 MTR_4g009040 35.294 136 81 3 1 133 188 319 1.42e-16 74.7
MsG0880044906.01.T01 MTR_4g009040 35.294 136 81 3 1 133 192 323 1.43e-16 74.7
MsG0880044906.01.T01 MTR_4g009690 35.556 135 81 3 1 133 188 318 1.84e-16 74.3
MsG0880044906.01.T01 MTR_4g009690 35.294 136 81 4 1 133 188 319 8.52e-15 69.7
MsG0880044906.01.T01 MTR_4g006940 46.753 77 39 1 11 85 197 273 3.89e-14 67.8
MsG0880044906.01.T01 MTR_4g006940 46.753 77 39 1 11 85 197 273 3.89e-14 67.8
MsG0880044906.01.T01 MTR_2g028620 39.535 86 50 1 1 84 188 273 1.34e-12 63.5
MsG0880044906.01.T01 MTR_3g031650 33.696 92 59 1 1 90 181 272 1.53e-12 63.2
MsG0880044906.01.T01 MTR_2g101330 28.261 138 92 3 1 134 182 316 4.32e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044906.01.T01 AT5G19440 62.857 140 51 1 1 139 187 326 2.65e-60 189
MsG0880044906.01.T01 AT1G51410 62.143 140 52 1 1 139 186 325 9.25e-60 187
MsG0880044906.01.T01 AT1G09480 45.926 135 72 1 1 134 185 319 7.03e-32 115
MsG0880044906.01.T01 AT1G09490 45.185 135 73 1 1 134 154 288 7.97e-32 114
MsG0880044906.01.T01 AT1G09510 45.652 138 74 1 1 137 185 322 1.56e-31 114
MsG0880044906.01.T01 AT1G09480 45.926 135 72 1 1 134 232 366 1.61e-31 115
MsG0880044906.01.T01 AT1G09490 45.185 135 73 1 1 134 185 319 1.80e-31 114
MsG0880044906.01.T01 AT1G09500 43.571 140 76 3 1 137 152 291 1.75e-29 108
MsG0880044906.01.T01 AT1G66800 45.926 135 72 1 1 134 181 315 1.80e-29 109
MsG0880044906.01.T01 AT1G09500 43.571 140 76 3 1 137 186 325 3.45e-29 108
MsG0880044906.01.T01 AT1G15950 41.732 127 71 2 11 134 95 221 2.08e-25 97.1
MsG0880044906.01.T01 AT1G15950 41.732 127 71 2 11 134 193 319 1.50e-24 96.7
MsG0880044906.01.T01 AT1G15950 41.732 127 71 2 11 134 193 319 1.50e-24 96.7
MsG0880044906.01.T01 AT1G80820 40.157 127 73 2 11 134 188 314 4.68e-23 92.4
MsG0880044906.01.T01 AT2G02400 33.824 136 88 1 1 134 180 315 9.23e-22 89.0
MsG0880044906.01.T01 AT1G15950 40.833 120 68 2 11 127 193 312 1.27e-21 88.6
MsG0880044906.01.T01 AT5G58490 32.143 140 93 1 1 138 185 324 2.04e-18 79.7
MsG0880044906.01.T01 AT1G09500 41.935 93 53 1 1 92 186 278 3.35e-18 78.6
MsG0880044906.01.T01 AT1G68540 30.714 140 94 2 1 137 75 214 4.21e-18 77.4
MsG0880044906.01.T01 AT1G68540 30.714 140 94 2 1 137 182 321 1.52e-17 77.4
MsG0880044906.01.T01 AT1G25460 31.206 141 92 4 1 137 180 319 5.77e-14 67.4
MsG0880044906.01.T01 AT4G35420 29.197 137 92 2 1 134 184 318 1.31e-13 66.6
MsG0880044906.01.T01 AT2G33600 33.099 142 87 3 1 138 184 321 1.44e-13 66.2
MsG0880044906.01.T01 AT1G15950 39.773 88 51 1 11 96 193 280 5.48e-13 64.7
MsG0880044906.01.T01 AT2G33590 31.915 141 90 2 1 138 184 321 5.62e-13 64.7
MsG0880044906.01.T01 AT1G15950 44.156 77 41 1 11 85 193 269 5.85e-13 64.3
MsG0880044906.01.T01 AT1G15950 44.156 77 41 1 11 85 193 269 5.98e-13 64.3
MsG0880044906.01.T01 AT1G76470 31.111 135 86 3 1 131 185 316 4.32e-12 62.4
MsG0880044906.01.T01 AT1G80820 41.558 77 43 1 11 85 188 264 5.00e-11 58.9

Find 59 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATCCATATGCTTTATT+TGG 0.080401 8:-51217859 None:intergenic
ATCTGATATGTTGGCATATA+CGG 0.233346 8:-51218689 None:intergenic
CCATTTATTAGGTTTAAAAT+TGG 0.243613 8:-51216647 None:intergenic
CAGTCTCATATGCCAGAATA+TGG 0.262800 8:-51217906 None:intergenic
TAAGGAAAAGGCTAAGAGTT+TGG 0.265642 8:+51218715 MsG0880044906.01.T01:CDS
TTTGAAGGGATAAGAGAAAA+AGG 0.276629 8:+51216332 MsG0880044906.01.T01:five_prime_UTR
TCTCTTATCCCTTCAAAGTT+TGG 0.281619 8:-51216326 None:intergenic
TTTGGTATTAGATTAGATTA+AGG 0.292855 8:+51216211 MsG0880044906.01.T01:five_prime_UTR
TGTTGCTAACGCCCATATTC+TGG 0.300399 8:+51217894 MsG0880044906.01.T01:CDS
GGGGATTCACTTTCACTTCA+TGG 0.310142 8:-51218872 None:intergenic
TCTATTTGTGTTATTAGTTA+TGG 0.343717 8:+51216489 MsG0880044906.01.T01:five_prime_UTR
TTGTCTGAAATTTGTAAAGT+TGG 0.353800 8:-51218009 None:intergenic
AAGGAAAAGGCTAAGAGTTT+GGG 0.368159 8:+51218716 MsG0880044906.01.T01:CDS
GGGAATCGAGTTTACTCCTT+TGG 0.384776 8:+51218736 MsG0880044906.01.T01:CDS
AGCTAGTGGAAGATATTGTT+TGG 0.390621 8:+51217933 MsG0880044906.01.T01:CDS
CCATATGCTTTATTTGGAAA+AGG 0.401052 8:-51217853 None:intergenic
CTCTTACAACCAGAGCTTAA+CGG 0.407447 8:+51216614 MsG0880044906.01.T01:CDS
TCCTTAGAAATCTGATATGT+TGG 0.412095 8:-51218698 None:intergenic
GCCAACATATCAGATTTCTA+AGG 0.414757 8:+51218697 MsG0880044906.01.T01:CDS
TGTCTGAAATTTGTAAAGTT+GGG 0.417946 8:-51218008 None:intergenic
AGAGGTCCTGCCACCATTGT+TGG 0.428227 8:-51216593 None:intergenic
TCTTGTCATGAATTATTAAG+TGG 0.447449 8:-51218832 None:intergenic
GTACACACTTTCGAAGACTT+TGG 0.455183 8:+51216511 MsG0880044906.01.T01:five_prime_UTR
CTTTGGCTGAGGCTGCTGCC+TGG 0.462996 8:+51216528 MsG0880044906.01.T01:five_prime_UTR
ATATCAGATTTCTAAGGAAA+AGG 0.464916 8:+51218703 MsG0880044906.01.T01:CDS
GAGGTCCTGCCACCATTGTT+GGG 0.466002 8:-51216592 None:intergenic
GAAAATGTTATTGTACTAAG+TGG 0.470185 8:-51218894 None:intergenic
GTGTGTGTGACAGGTGCTGC+TGG 0.477693 8:+51216379 MsG0880044906.01.T01:five_prime_UTR
AAGGGCAGTCCAAACTTTGA+AGG 0.481124 8:+51216317 MsG0880044906.01.T01:five_prime_UTR
TCAACACTTCCGTTAAGCTC+TGG 0.486325 8:-51216623 None:intergenic
GGAAAAGTGGTGTGTGTGAC+AGG 0.486873 8:+51216370 MsG0880044906.01.T01:five_prime_UTR
AAAATGTTATTGTACTAAGT+GGG 0.489408 8:-51218893 None:intergenic
TATGAGTGGGGAAGGAAAAG+TGG 0.501831 8:+51216357 MsG0880044906.01.T01:five_prime_UTR
TTATAAGGTGTGAAGATGAC+GGG 0.511975 8:+51218666 MsG0880044906.01.T01:intron
TATGAGACTGCTTCAGCTAG+TGG 0.523274 8:+51217919 MsG0880044906.01.T01:CDS
TCCTTGAGGCTGACTTCCAA+AGG 0.541588 8:-51218752 None:intergenic
AGTCTCATATGCCAGAATAT+GGG 0.541622 8:-51217905 None:intergenic
TTTATAAGGTGTGAAGATGA+CGG 0.542359 8:+51218665 MsG0880044906.01.T01:intron
AAAAGGATTATGAGTGGGGA+AGG 0.549887 8:+51216349 MsG0880044906.01.T01:five_prime_UTR
TTCCAAATAAAGCATATGGA+TGG 0.552811 8:+51217857 MsG0880044906.01.T01:CDS
ACTTTCGAAGACTTTGGCTG+AGG 0.557625 8:+51216517 MsG0880044906.01.T01:five_prime_UTR
ATAGAAGTAGTCAAGAATGT+TGG 0.572002 8:-51216471 None:intergenic
AAATGTTATTGTACTAAGTG+GGG 0.573815 8:-51218892 None:intergenic
TCCTTTGGAAGTCAGCCTCA+AGG 0.576984 8:+51218751 MsG0880044906.01.T01:CDS
CAAGTAGTCGTAGAAGCTCA+AGG 0.580283 8:+51216298 MsG0880044906.01.T01:five_prime_UTR
ATTAACCCAACAATGGTGGC+AGG 0.586153 8:+51216587 MsG0880044906.01.T01:CDS
TTAAGCTCTGGTTGTAAGAG+AGG 0.589725 8:-51216611 None:intergenic
ATATTGTTTGGCTGAGAGAG+TGG 0.592698 8:+51217945 MsG0880044906.01.T01:CDS
TGCTATTAACCCAACAATGG+TGG 0.600626 8:+51216583 MsG0880044906.01.T01:CDS
AATGTTATTGTACTAAGTGG+GGG 0.602107 8:-51218891 None:intergenic
AGGGCAGTCCAAACTTTGAA+GGG 0.603003 8:+51216318 MsG0880044906.01.T01:five_prime_UTR
AGCTTTCCACAGTCTCCTTG+AGG 0.603990 8:-51218766 None:intergenic
AAGTAGTCGTAGAAGCTCAA+GGG 0.613557 8:+51216299 MsG0880044906.01.T01:five_prime_UTR
AAAATATTATGAAACCACGC+TGG 0.641690 8:-51216435 None:intergenic
AAATGAAAACAGCATTGACA+TGG 0.650659 8:+51216559 MsG0880044906.01.T01:exon
AGTCAGCCTCAAGGAGACTG+TGG 0.656563 8:+51218760 MsG0880044906.01.T01:CDS
GTTAAGTTTCTCCTCCAGCG+TGG 0.666589 8:+51216421 MsG0880044906.01.T01:five_prime_UTR
ATATTATGAAACCACGCTGG+AGG 0.678511 8:-51216432 None:intergenic
GGTTGCTATTAACCCAACAA+TGG 0.678942 8:+51216580 MsG0880044906.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAATAGATAAAAATATT+TGG - Chr8:51217520-51217539 None:intergenic 10.0%
!!! AATTTTAGTTTATTTTAGTT+GGG + Chr8:51218204-51218223 MsG0880044906.01.T01:intron 10.0%
!!! AATTTTTACTTTTTTTAATG+GGG - Chr8:51217055-51217074 None:intergenic 10.0%
!!! TAATTTTAGTTTATTTTAGT+TGG + Chr8:51218203-51218222 MsG0880044906.01.T01:intron 10.0%
!! AAATATGACATTATTTGATA+TGG - Chr8:51217770-51217789 None:intergenic 15.0%
!! AAGAAAAATTACCATTTATT+AGG - Chr8:51216661-51216680 None:intergenic 15.0%
!! ATTGATATTAGATAAGATTT+AGG + Chr8:51217540-51217559 MsG0880044906.01.T01:intron 15.0%
!! TGCTATATAAAATATGAATT+GGG + Chr8:51218043-51218062 MsG0880044906.01.T01:intron 15.0%
!! TTGCTATATAAAATATGAAT+TGG + Chr8:51218042-51218061 MsG0880044906.01.T01:intron 15.0%
!!! AATAGTAAATATTTTCACAA+AGG + Chr8:51218135-51218154 MsG0880044906.01.T01:intron 15.0%
!!! ATAAATGGTAATTTTTCTTT+AGG + Chr8:51216662-51216681 MsG0880044906.01.T01:intron 15.0%
!!! ATAGTAAATATTTTCACAAA+GGG + Chr8:51218136-51218155 MsG0880044906.01.T01:intron 15.0%
!!! TTCATATTTTTTTAAGATAG+CGG + Chr8:51217286-51217305 MsG0880044906.01.T01:intron 15.0%
!!! TTTTTAATGACATAGTTATA+GGG + Chr8:51216262-51216281 MsG0880044906.01.T01:five_prime_UTR 15.0%
!!! TTTTTTAATGACATAGTTAT+AGG + Chr8:51216261-51216280 MsG0880044906.01.T01:five_prime_UTR 15.0%
!! AAAAAATTAACTTCTTTGCA+CGG - Chr8:51218610-51218629 None:intergenic 20.0%
!! AAAATGTTATTGTACTAAGT+GGG - Chr8:51218896-51218915 None:intergenic 20.0%
!! AAATATGGTTTCAAATTACT+CGG + Chr8:51217221-51217240 MsG0880044906.01.T01:intron 20.0%
!! ATAACATTTATAGTGATTGT+TGG + Chr8:51217614-51217633 MsG0880044906.01.T01:intron 20.0%
!! ATCATTAACAAAATCACAAA+GGG - Chr8:51216925-51216944 None:intergenic 20.0%
!! ATGATAGATTTGATAAAGAA+TGG + Chr8:51216940-51216959 MsG0880044906.01.T01:intron 20.0%
!! CTTATGTTTGTAAAATAACA+TGG + Chr8:51218161-51218180 MsG0880044906.01.T01:intron 20.0%
!! CTTTGATTAATCAATAATAG+TGG + Chr8:51217729-51217748 MsG0880044906.01.T01:intron 20.0%
!! TATATTATAGAAATTCAGCA+CGG + Chr8:51218241-51218260 MsG0880044906.01.T01:intron 20.0%
!! TATCATTAACAAAATCACAA+AGG - Chr8:51216926-51216945 None:intergenic 20.0%
!! TTTGGTATTAGATTAGATTA+AGG + Chr8:51216211-51216230 MsG0880044906.01.T01:five_prime_UTR 20.0%
!!! AAAAAGCTTATATTAGTTTG+TGG + Chr8:51216725-51216744 MsG0880044906.01.T01:intron 20.0%
!!! CAGTAAAAGTTTCATTTTTT+TGG + Chr8:51216193-51216212 MsG0880044906.01.T01:five_prime_UTR 20.0%
!!! CCAATTTTAAACCTAATAAA+TGG + Chr8:51216647-51216666 MsG0880044906.01.T01:CDS 20.0%
!!! CCATTTATTAGGTTTAAAAT+TGG - Chr8:51216650-51216669 None:intergenic 20.0%
!!! TAAACAACTTTTTGAATTGT+TGG + Chr8:51217819-51217838 MsG0880044906.01.T01:intron 20.0%
!!! TCTAATTTGTGTTTTTTGTA+TGG - Chr8:51218467-51218486 None:intergenic 20.0%
!!! TCTATTTGTGTTATTAGTTA+TGG + Chr8:51216489-51216508 MsG0880044906.01.T01:five_prime_UTR 20.0%
! AAAAATTAACTTCTTTGCAC+GGG - Chr8:51218609-51218628 None:intergenic 25.0%
! AAAGTTGTTTATTATGCAAG+AGG - Chr8:51217810-51217829 None:intergenic 25.0%
! AAATGTTATTGTACTAAGTG+GGG - Chr8:51218895-51218914 None:intergenic 25.0%
! ACTATGTCATTAAAAAATGC+AGG - Chr8:51216258-51216277 None:intergenic 25.0%
! ATAAAATTGTACACATGTTG+AGG - Chr8:51217450-51217469 None:intergenic 25.0%
! CTTGATAAAAACGTGAAATA+TGG + Chr8:51217206-51217225 MsG0880044906.01.T01:intron 25.0%
! GAAAATGTTATTGTACTAAG+TGG - Chr8:51218897-51218916 None:intergenic 25.0%
! GACATATTAGAGACAAATAT+TGG - Chr8:51217676-51217695 None:intergenic 25.0%
! TATAATATAAACCAACTGCT+AGG - Chr8:51218230-51218249 None:intergenic 25.0%
! TCATTAACAAAATCACAAAG+GGG - Chr8:51216924-51216943 None:intergenic 25.0%
! TCTTGTCATGAATTATTAAG+TGG - Chr8:51218835-51218854 None:intergenic 25.0%
! TTCATTGTTACAACTATTGA+AGG + Chr8:51217588-51217607 MsG0880044906.01.T01:intron 25.0%
!! AATGGTAATTTTTCTTTAGG+AGG + Chr8:51216665-51216684 MsG0880044906.01.T01:intron 25.0%
!! ACACAAATTAGATTTTTGCT+CGG + Chr8:51218475-51218494 MsG0880044906.01.T01:intron 25.0%
!! ATAAATATCATAGTTGATGC+AGG + Chr8:51217019-51217038 MsG0880044906.01.T01:intron 25.0%
!! ATATCAGATTTCTAAGGAAA+AGG + Chr8:51218703-51218722 MsG0880044906.01.T01:CDS 25.0%
!! ATTAATTTTGTATACTGTGC+TGG + Chr8:51217072-51217091 MsG0880044906.01.T01:intron 25.0%
!! GCAATCTCTACAATTTTATA+AGG + Chr8:51218651-51218670 MsG0880044906.01.T01:intron 25.0%
!! GTTTTCATTTACAAATTTCC+AGG - Chr8:51216549-51216568 None:intergenic 25.0%
!! TAAATATCATAGTTGATGCA+GGG + Chr8:51217020-51217039 MsG0880044906.01.T01:intron 25.0%
!! TGTCTGAAATTTGTAAAGTT+GGG - Chr8:51218011-51218030 None:intergenic 25.0%
!! TTGTCTGAAATTTGTAAAGT+TGG - Chr8:51218012-51218031 None:intergenic 25.0%
!!! AATGAAACTTTTACTGATTC+TGG - Chr8:51216189-51216208 None:intergenic 25.0%
!!! CATCTCTTAATTTGTTCTTT+GGG - Chr8:51218393-51218412 None:intergenic 25.0%
!!! TCATCTCTTAATTTGTTCTT+TGG - Chr8:51218394-51218413 None:intergenic 25.0%
!!! TTTTACTTTTTTTAATGGGG+TGG - Chr8:51217052-51217071 None:intergenic 25.0%
AAAATATTATGAAACCACGC+TGG - Chr8:51216438-51216457 None:intergenic 30.0%
AAGAGAAAAAGGATTATGAG+TGG + Chr8:51216343-51216362 MsG0880044906.01.T01:five_prime_UTR 30.0%
AAGAGATGAATGAAACTTGT+TGG + Chr8:51218405-51218424 MsG0880044906.01.T01:intron 30.0%
AAGCAAAGAACTAAAAACAG+CGG - Chr8:51218087-51218106 None:intergenic 30.0%
AATGTTATTGTACTAAGTGG+GGG - Chr8:51218894-51218913 None:intergenic 30.0%
AGAGAAAAAGGATTATGAGT+GGG + Chr8:51216344-51216363 MsG0880044906.01.T01:five_prime_UTR 30.0%
ATAGAAGTAGTCAAGAATGT+TGG - Chr8:51216474-51216493 None:intergenic 30.0%
ATCTGATATGTTGGCATATA+CGG - Chr8:51218692-51218711 None:intergenic 30.0%
GAATTGTCTAAGCTCTATTT+AGG - Chr8:51218337-51218356 None:intergenic 30.0%
GTCTCTAATATGTCATTGAA+TGG + Chr8:51217682-51217701 MsG0880044906.01.T01:intron 30.0%
TCCAACATAACTATGCTAAA+GGG - Chr8:51216819-51216838 None:intergenic 30.0%
TCCTTAGAAATCTGATATGT+TGG - Chr8:51218701-51218720 None:intergenic 30.0%
TCTCAACAAGATGATAACTT+AGG + Chr8:51216866-51216885 MsG0880044906.01.T01:intron 30.0%
TTCCAAATAAAGCATATGGA+TGG + Chr8:51217857-51217876 MsG0880044906.01.T01:CDS 30.0%
TTCCAACATAACTATGCTAA+AGG - Chr8:51216820-51216839 None:intergenic 30.0%
TTCCACATAAGCTAGAAATA+TGG + Chr8:51218311-51218330 MsG0880044906.01.T01:intron 30.0%
TTTATAAGGTGTGAAGATGA+CGG + Chr8:51218665-51218684 MsG0880044906.01.T01:intron 30.0%
TTTGAAGGGATAAGAGAAAA+AGG + Chr8:51216332-51216351 MsG0880044906.01.T01:five_prime_UTR 30.0%
! CCTTTTCCAAATAAAGCATA+TGG + Chr8:51217853-51217872 MsG0880044906.01.T01:CDS 30.0%
! TTTTCTTTATGCTACACTTC+TGG + Chr8:51216890-51216909 MsG0880044906.01.T01:intron 30.0%
! TTTTGTATGGTCCAAGTAAA+GGG - Chr8:51218454-51218473 None:intergenic 30.0%
! TTTTTGTATGGTCCAAGTAA+AGG - Chr8:51218455-51218474 None:intergenic 30.0%
!! AAATGAAAACAGCATTGACA+TGG + Chr8:51216559-51216578 MsG0880044906.01.T01:exon 30.0%
!! CCATATGCTTTATTTGGAAA+AGG - Chr8:51217856-51217875 None:intergenic 30.0%
!! TTTCTAGCTTATGTGGAATT+TGG - Chr8:51218309-51218328 None:intergenic 30.0%
AAGGAAAAGGCTAAGAGTTT+GGG + Chr8:51218716-51218735 MsG0880044906.01.T01:CDS 35.0%
AGATTATGACTGATAGCAAG+AGG - Chr8:51217652-51217671 None:intergenic 35.0%
AGCTAGTGGAAGATATTGTT+TGG + Chr8:51217933-51217952 MsG0880044906.01.T01:CDS 35.0%
AGTCTCATATGCCAGAATAT+GGG - Chr8:51217908-51217927 None:intergenic 35.0%
CAGTTTACTCTATCTCACAA+GGG + Chr8:51218511-51218530 MsG0880044906.01.T01:intron 35.0%
CATTCCTCATAAGAGAATGA+GGG + Chr8:51217394-51217413 MsG0880044906.01.T01:intron 35.0%
CTATCTCACAAGGGTTATAA+AGG + Chr8:51218520-51218539 MsG0880044906.01.T01:intron 35.0%
GAGAAAAAGGATTATGAGTG+GGG + Chr8:51216345-51216364 MsG0880044906.01.T01:five_prime_UTR 35.0%
GATTATGACTGATAGCAAGA+GGG - Chr8:51217651-51217670 None:intergenic 35.0%
GCCAACATATCAGATTTCTA+AGG + Chr8:51218697-51218716 MsG0880044906.01.T01:CDS 35.0%
GCTTAATTTCAATCACGATG+TGG + Chr8:51217133-51217152 MsG0880044906.01.T01:intron 35.0%
TAAGGAAAAGGCTAAGAGTT+TGG + Chr8:51218715-51218734 MsG0880044906.01.T01:CDS 35.0%
TCAGTTTACTCTATCTCACA+AGG + Chr8:51218510-51218529 MsG0880044906.01.T01:intron 35.0%
TCTCTTATCCCTTCAAAGTT+TGG - Chr8:51216329-51216348 None:intergenic 35.0%
TTATAAGGTGTGAAGATGAC+GGG + Chr8:51218666-51218685 MsG0880044906.01.T01:intron 35.0%
TTCTCTTATGAGGAATGCTA+AGG - Chr8:51217391-51217410 None:intergenic 35.0%
! CACCATCCATATGCTTTATT+TGG - Chr8:51217862-51217881 None:intergenic 35.0%
! CTTTTTGAATTGTTGGATGC+AGG + Chr8:51217826-51217845 MsG0880044906.01.T01:intron 35.0%
! TGCTTCTTGTTTGAAACACT+CGG + Chr8:51218106-51218125 MsG0880044906.01.T01:intron 35.0%
!! GAAACTTGTTGGAACTTCTT+TGG + Chr8:51218416-51218435 MsG0880044906.01.T01:intron 35.0%
AAAAGGATTATGAGTGGGGA+AGG + Chr8:51216349-51216368 MsG0880044906.01.T01:five_prime_UTR 40.0%
AAGTAGTCGTAGAAGCTCAA+GGG + Chr8:51216299-51216318 MsG0880044906.01.T01:five_prime_UTR 40.0%
ACAATTCTCTCCCTACAAAC+TGG + Chr8:51218350-51218369 MsG0880044906.01.T01:intron 40.0%
ATAAAGGCTTCTGTCCTCAT+GGG + Chr8:51218536-51218555 MsG0880044906.01.T01:intron 40.0%
ATACTCTTGTAGTCTCAGTC+AGG - Chr8:51217495-51217514 None:intergenic 40.0%
ATATTATGAAACCACGCTGG+AGG - Chr8:51216435-51216454 None:intergenic 40.0%
ATATTGTTTGGCTGAGAGAG+TGG + Chr8:51217945-51217964 MsG0880044906.01.T01:CDS 40.0%
ATGCAAGAGGAATTCTTGTC+TGG - Chr8:51217797-51217816 None:intergenic 40.0%
CAGTCTCATATGCCAGAATA+TGG - Chr8:51217909-51217928 None:intergenic 40.0%
CTCTTACAACCAGAGCTTAA+CGG + Chr8:51216614-51216633 MsG0880044906.01.T01:CDS 40.0%
GAGCCAGACCAAAAAATTTG+GGG - Chr8:51217315-51217334 None:intergenic 40.0%
GCATTCCTCATAAGAGAATG+AGG + Chr8:51217393-51217412 MsG0880044906.01.T01:intron 40.0%
GCCCTTTAGCATAGTTATGT+TGG + Chr8:51216815-51216834 MsG0880044906.01.T01:intron 40.0%
GGAGCCAGACCAAAAAATTT+GGG - Chr8:51217316-51217335 None:intergenic 40.0%
GTACACACTTTCGAAGACTT+TGG + Chr8:51216511-51216530 MsG0880044906.01.T01:five_prime_UTR 40.0%
TATAAAGGCTTCTGTCCTCA+TGG + Chr8:51218535-51218554 MsG0880044906.01.T01:intron 40.0%
TATGCCCTCATTCTCTTATG+AGG - Chr8:51217401-51217420 None:intergenic 40.0%
TGCTATTAACCCAACAATGG+TGG + Chr8:51216583-51216602 MsG0880044906.01.T01:CDS 40.0%
TGTTTGTGCTTCCCTTTACT+TGG + Chr8:51218440-51218459 MsG0880044906.01.T01:intron 40.0%
! CTATGCTAAAGGGCATGTTA+AGG - Chr8:51216809-51216828 None:intergenic 40.0%
! GGTTGCTATTAACCCAACAA+TGG + Chr8:51216580-51216599 MsG0880044906.01.T01:CDS 40.0%
! TTAAGCTCTGGTTGTAAGAG+AGG - Chr8:51216614-51216633 None:intergenic 40.0%
!! GGCCATATTTCTAGCTTATG+TGG - Chr8:51218316-51218335 None:intergenic 40.0%
!!! CTGCTGGTTTTATTGCTTCA+TGG + Chr8:51216395-51216414 MsG0880044906.01.T01:five_prime_UTR 40.0%
!!! TTTTTTTAATGGGGTGGCCA+TGG - Chr8:51217046-51217065 None:intergenic 40.0%
AAGGGCAGTCCAAACTTTGA+AGG + Chr8:51216317-51216336 MsG0880044906.01.T01:five_prime_UTR 45.0%
ACTTTCGAAGACTTTGGCTG+AGG + Chr8:51216517-51216536 MsG0880044906.01.T01:five_prime_UTR 45.0%
AGGGCAGTCCAAACTTTGAA+GGG + Chr8:51216318-51216337 MsG0880044906.01.T01:five_prime_UTR 45.0%
ATCCCAGCAAACCAGTTTGT+AGG - Chr8:51218364-51218383 None:intergenic 45.0%
ATTAACCCAACAATGGTGGC+AGG + Chr8:51216587-51216606 MsG0880044906.01.T01:CDS 45.0%
CAAGTAGTCGTAGAAGCTCA+AGG + Chr8:51216298-51216317 MsG0880044906.01.T01:five_prime_UTR 45.0%
CCAGACCAAAAAATTTGGGG+TGG - Chr8:51217312-51217331 None:intergenic 45.0%
CGGAGCCAGACCAAAAAATT+TGG - Chr8:51217317-51217336 None:intergenic 45.0%
GAGATGAACAACTTCCCATG+AGG - Chr8:51218553-51218572 None:intergenic 45.0%
GGGAATCGAGTTTACTCCTT+TGG + Chr8:51218736-51218755 MsG0880044906.01.T01:CDS 45.0%
GGGGATTCACTTTCACTTCA+TGG - Chr8:51218875-51218894 None:intergenic 45.0%
TATGAGACTGCTTCAGCTAG+TGG + Chr8:51217919-51217938 MsG0880044906.01.T01:CDS 45.0%
TATGAGTGGGGAAGGAAAAG+TGG + Chr8:51216357-51216376 MsG0880044906.01.T01:five_prime_UTR 45.0%
TCAACACTTCCGTTAAGCTC+TGG - Chr8:51216626-51216645 None:intergenic 45.0%
TCCCAGCAAACCAGTTTGTA+GGG - Chr8:51218363-51218382 None:intergenic 45.0%
TGTTGCTAACGCCCATATTC+TGG + Chr8:51217894-51217913 MsG0880044906.01.T01:CDS 45.0%
TTGAACACTCCCTCAACCAT+TGG - Chr8:51217346-51217365 None:intergenic 45.0%
!! AACTGGTTTGCTGGGATTGT+AGG + Chr8:51218367-51218386 MsG0880044906.01.T01:intron 45.0%
!! ATGGTTGAGGGAGTGTTCAA+AGG + Chr8:51217346-51217365 MsG0880044906.01.T01:intron 45.0%
!! TCCCTACAAACTGGTTTGCT+GGG + Chr8:51218359-51218378 MsG0880044906.01.T01:intron 45.0%
!! TTTTAGTTGGGCCTAGCAGT+TGG + Chr8:51218216-51218235 MsG0880044906.01.T01:intron 45.0%
!!! CCACCCCAAATTTTTTGGTC+TGG + Chr8:51217309-51217328 MsG0880044906.01.T01:intron 45.0%
!!! TAATTTTTACTTTTTTTAAT+GGG - Chr8:51217056-51217075 None:intergenic 5.0%
!!! TTAATTTTTACTTTTTTTAA+TGG - Chr8:51217057-51217076 None:intergenic 5.0%
AGCTTTCCACAGTCTCCTTG+AGG - Chr8:51218769-51218788 None:intergenic 50.0%
GGAAAAGTGGTGTGTGTGAC+AGG + Chr8:51216370-51216389 MsG0880044906.01.T01:five_prime_UTR 50.0%
GTTAAGTTTCTCCTCCAGCG+TGG + Chr8:51216421-51216440 MsG0880044906.01.T01:five_prime_UTR 50.0%
! TCATAGTTGATGCAGGGCCA+TGG + Chr8:51217026-51217045 MsG0880044906.01.T01:intron 50.0%
! TCCTTGAGGCTGACTTCCAA+AGG - Chr8:51218755-51218774 None:intergenic 50.0%
! TCCTTTGGAAGTCAGCCTCA+AGG + Chr8:51218751-51218770 MsG0880044906.01.T01:CDS 50.0%
!! CTCCCTACAAACTGGTTTGC+TGG + Chr8:51218358-51218377 MsG0880044906.01.T01:intron 50.0%
!!! AGCGGCCACCCCAAATTTTT+TGG + Chr8:51217304-51217323 MsG0880044906.01.T01:intron 50.0%
ACTCCCTCAACCATTGGCAG+TGG - Chr8:51217340-51217359 None:intergenic 55.0%
AGAGGTCCTGCCACCATTGT+TGG - Chr8:51216596-51216615 None:intergenic 55.0%
AGTCAGCCTCAAGGAGACTG+TGG + Chr8:51218760-51218779 MsG0880044906.01.T01:CDS 55.0%
GAGGTCCTGCCACCATTGTT+GGG - Chr8:51216595-51216614 None:intergenic 55.0%
CCCTCAACCATTGGCAGTGG+CGG - Chr8:51217337-51217356 None:intergenic 60.0%
CCGCCACTGCCAATGGTTGA+GGG + Chr8:51217334-51217353 MsG0880044906.01.T01:intron 60.0%
TCCGCCACTGCCAATGGTTG+AGG + Chr8:51217333-51217352 MsG0880044906.01.T01:intron 60.0%
! GTGTGTGTGACAGGTGCTGC+TGG + Chr8:51216379-51216398 MsG0880044906.01.T01:five_prime_UTR 60.0%
CTTTGGCTGAGGCTGCTGCC+TGG + Chr8:51216528-51216547 MsG0880044906.01.T01:five_prime_UTR 65.0%
! TCTGGCTCCGCCACTGCCAA+TGG + Chr8:51217327-51217346 MsG0880044906.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 51216179 51218966 51216179 ID=MsG0880044906.01;Name=MsG0880044906.01
Chr8 mRNA 51216179 51218966 51216179 ID=MsG0880044906.01.T01;Parent=MsG0880044906.01;Name=MsG0880044906.01.T01;_AED=0.38;_eAED=0.38;_QI=399|1|1|1|1|1|3|149|139
Chr8 exon 51216179 51216668 51216179 ID=MsG0880044906.01.T01:exon:21755;Parent=MsG0880044906.01.T01
Chr8 exon 51217848 51218031 51217848 ID=MsG0880044906.01.T01:exon:21756;Parent=MsG0880044906.01.T01
Chr8 exon 51218673 51218966 51218673 ID=MsG0880044906.01.T01:exon:21757;Parent=MsG0880044906.01.T01
Chr8 five_prime_UTR 51216179 51216577 51216179 ID=MsG0880044906.01.T01:five_prime_utr;Parent=MsG0880044906.01.T01
Chr8 CDS 51216578 51216668 51216578 ID=MsG0880044906.01.T01:cds;Parent=MsG0880044906.01.T01
Chr8 CDS 51217848 51218031 51217848 ID=MsG0880044906.01.T01:cds;Parent=MsG0880044906.01.T01
Chr8 CDS 51218673 51218817 51218673 ID=MsG0880044906.01.T01:cds;Parent=MsG0880044906.01.T01
Chr8 three_prime_UTR 51218818 51218966 51218818 ID=MsG0880044906.01.T01:three_prime_utr;Parent=MsG0880044906.01.T01
Gene Sequence

>MsG0880044906.01.T01

ATGGTTGCTATTAACCCAACAATGGTGGCAGGACCTCTCTTACAACCAGAGCTTAACGGAAGTGTTGAACCAATTTTAAACCTAATAAATGGTATGCCTTTTCCAAATAAAGCATATGGATGGTGCAATGTGAAAGATGTTGCTAACGCCCATATTCTGGCATATGAGACTGCTTCAGCTAGTGGAAGATATTGTTTGGCTGAGAGAGTGGTACACTATTCAGAACTTGCTATGATTTTACGTGATCTGTACCCAACTTTACAAATTTCAGACAAGTGTGAAGATGACGGGCCGTATATGCCAACATATCAGATTTCTAAGGAAAAGGCTAAGAGTTTGGGAATCGAGTTTACTCCTTTGGAAGTCAGCCTCAAGGAGACTGTGGAAAGCTTCAGAGAGAAAAAGATCGTCAACTTTTAA
Protein sequence

>MsG0880044906.01.T01

MVAINPTMVAGPLLQPELNGSVEPILNLINGMPFPNKAYGWCNVKDVANAHILAYETASASGRYCLAERVVHYSELAMILRDLYPTLQISDKCEDDGPYMPTYQISKEKAKSLGIEFTPLEVSLKETVESFREKKIVNF*