AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005731.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005731.01.T01 MTR_1g105930 89.736 341 6 1 1 341 1 312 0.0 585
MsG0180005731.01.T01 MTR_1g105930 97.619 252 6 0 90 341 91 342 0.0 509
MsG0180005731.01.T01 MTR_5g005370 79.283 251 50 1 86 334 55 305 7.31e-133 381
MsG0180005731.01.T01 MTR_5g005370 79.268 246 51 0 89 334 36 281 3.07e-132 379
MsG0180005731.01.T01 MTR_5g005370 79.592 245 50 0 90 334 72 316 4.43e-132 379
MsG0180005731.01.T01 MTR_5g005370 79.268 246 51 0 89 334 43 288 7.48e-132 378
MsG0180005731.01.T01 MTR_5g005370 79.268 246 51 0 90 335 72 317 4.77e-131 379
MsG0180005731.01.T01 MTR_8g066720 42.294 279 138 8 76 339 54 324 8.51e-62 202
MsG0180005731.01.T01 MTR_4g105690 42.742 248 133 4 91 332 69 313 1.57e-61 199
MsG0180005731.01.T01 MTR_3g067725 28.151 238 156 8 91 318 236 468 3.88e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005731.01.T01 AT4G08170 75.794 252 59 1 90 341 13 262 1.08e-129 371
MsG0180005731.01.T01 AT4G08170 75.794 252 59 1 90 341 101 350 3.55e-129 374
MsG0180005731.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005731.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005731.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005731.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005731.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005731.01.T01 AT4G33770 65.462 249 84 1 90 338 48 294 4.70e-109 320
MsG0180005731.01.T01 AT4G33770 65.462 249 84 1 90 338 141 387 4.24e-108 321
MsG0180005731.01.T01 AT4G33770 66.364 220 72 1 119 338 1 218 1.15e-94 281
MsG0180005731.01.T01 AT5G16760 40.690 290 154 6 51 334 39 316 1.92e-64 207
MsG0180005731.01.T01 AT2G43980 28.736 174 118 4 148 318 295 465 1.07e-15 78.2

Find 83 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTTGCACTACTTTATT+TGG 0.121328 1:+95391705 None:intergenic
TACAAACTTCATGGAGAATT+TGG 0.129435 1:+95394230 None:intergenic
CTTCATAAATATTTGAAAAT+AGG 0.164201 1:+95392095 None:intergenic
AAATCCTTCATTAATGAAAA+AGG 0.178226 1:+95394178 None:intergenic
CTAAAATATTTGTTGAAATA+TGG 0.207446 1:-95391803 MsG0180005731.01.T01:three_prime_UTR
TCTTACACTTGTTCTGCTTT+AGG 0.209814 1:+95392242 None:intergenic
TTTCATTAATGAAGGATTTC+AGG 0.219791 1:-95394174 MsG0180005731.01.T01:CDS
GTAGATATGATTCGTGAATA+TGG 0.249264 1:-95392453 MsG0180005731.01.T01:CDS
AATCGTTAGTATTATTAGTT+TGG 0.257470 1:-95394949 MsG0180005731.01.T01:CDS
TCCTCACTTGTTTGAATACT+TGG 0.277969 1:+95394790 None:intergenic
ATTGATATCAATTACTTTCC+TGG 0.288993 1:-95392408 MsG0180005731.01.T01:intron
ACTTGTTTGAATACTTGGTT+TGG 0.321358 1:+95394795 None:intergenic
TCTTTAAGATTTATATTGTT+GGG 0.323070 1:-95392863 MsG0180005731.01.T01:CDS
CTTCCAACTTCTCTTGCTTT+AGG 0.340512 1:+95392207 None:intergenic
CTTGTTTGAATACTTGGTTT+GGG 0.341169 1:+95394796 None:intergenic
TATTGTTGGGGAATACATAA+AGG 0.342629 1:-95392850 MsG0180005731.01.T01:CDS
AGCATGAACATTCTATTCAT+TGG 0.350260 1:+95391909 None:intergenic
AATAGAATGTTCATGCTTAG+TGG 0.358768 1:-95391903 MsG0180005731.01.T01:three_prime_UTR
CTCTTTAAGATTTATATTGT+TGG 0.359704 1:-95392864 MsG0180005731.01.T01:CDS
CCATCAAAATACAAACTTCA+TGG 0.369216 1:+95394221 None:intergenic
ACACCCACCAAGACCTTTGT+TGG 0.369643 1:-95392613 MsG0180005731.01.T01:CDS
CCAGCTTTGGTGACTTCATA+AGG 0.370201 1:+95393704 None:intergenic
GGCCGGACAACCACATCTTC+TGG 0.373243 1:-95394900 MsG0180005731.01.T01:CDS
AGCTCGCGTTTACTGATATT+AGG 0.375570 1:+95392807 None:intergenic
TAACAACATTGTCTATAAAC+TGG 0.377901 1:-95391850 MsG0180005731.01.T01:three_prime_UTR
CCTTATGAAGTCACCAAAGC+TGG 0.387765 1:-95393704 MsG0180005731.01.T01:CDS
ATCGTTAGTATTATTAGTTT+GGG 0.392746 1:-95394948 MsG0180005731.01.T01:CDS
GGAATCTCACCGGCAATACT+AGG 0.399683 1:+95392708 None:intergenic
GTTTATAGACAATGTTGTTA+AGG 0.401644 1:+95391853 None:intergenic
GTAAAGACGTGCTCGTAGTC+TGG 0.410319 1:+95392280 None:intergenic
CGGCAACTTCAACCCAGCTT+TGG 0.416268 1:+95393691 None:intergenic
GATCTTGATCCTAGTATTGC+CGG 0.427389 1:-95392717 MsG0180005731.01.T01:intron
CTACAAGAGTTTGTCAATCA+TGG 0.430927 1:-95392989 MsG0180005731.01.T01:intron
TTCAGAGCTTGAACCTCCAC+TGG 0.437347 1:-95393014 MsG0180005731.01.T01:CDS
ACTTCATAAGGAATAGTAGA+TGG 0.444777 1:+95393716 None:intergenic
AGCCTCTCCAACAAAGGTCT+TGG 0.445162 1:+95392606 None:intergenic
AAAAGAGCTTCGTCATAGAT+TGG 0.446522 1:-95392580 MsG0180005731.01.T01:intron
CTGCCTAAAGCAAGAGAAGT+TGG 0.446556 1:-95392210 MsG0180005731.01.T01:exon
ATCCAGAAGATGTGGTTGTC+CGG 0.458056 1:+95394898 None:intergenic
CTCTCCAACAAAGGTCTTGG+TGG 0.458592 1:+95392609 None:intergenic
TAGATATGATTCGTGAATAT+GGG 0.470110 1:-95392452 MsG0180005731.01.T01:CDS
GCTGCTGCACATGAAACTCT+TGG 0.473192 1:+95392756 None:intergenic
TGTAAATGTTGAATTGCATC+AGG 0.481257 1:+95394118 None:intergenic
CACATGAAACTCTTGGAAAA+CGG 0.483083 1:+95392763 None:intergenic
CACCAAGACCTTTGTTGGAG+AGG 0.502650 1:-95392608 MsG0180005731.01.T01:CDS
TTGTTTGAATACTTGGTTTG+GGG 0.506145 1:+95394797 None:intergenic
TGTTTGAATACTTGGTTTGG+GGG 0.507717 1:+95394798 None:intergenic
GGATCAAGAACGAATACATC+GGG 0.519070 1:+95394142 None:intergenic
CCACATCTTGAAGCATGGAT+TGG 0.521285 1:+95394089 None:intergenic
CATCTTGAAGCATGGATTGG+CGG 0.525990 1:+95394092 None:intergenic
CTTTAAGATTTATATTGTTG+GGG 0.527390 1:-95392862 MsG0180005731.01.T01:CDS
GCTGGGTTGAAGTTGCCGTT+AGG 0.530540 1:-95393686 MsG0180005731.01.T01:intron
TTTGCAAGCCTCTCCAACAA+AGG 0.530921 1:+95392600 None:intergenic
ATCCACCACATCTTGAAGCA+TGG 0.535346 1:+95394084 None:intergenic
AATGACATAAAACACATCCT+TGG 0.546362 1:+95392428 None:intergenic
TTTGGGAGTTGAGTATGACA+TGG 0.550445 1:-95394931 MsG0180005731.01.T01:CDS
CCAATCCATGCTTCAAGATG+TGG 0.557398 1:-95394089 MsG0180005731.01.T01:CDS
TGGTAGAAATTGGGACAGAG+TGG 0.560116 1:+95391760 None:intergenic
CTTATGAAGTCACCAAAGCT+GGG 0.565266 1:-95393703 MsG0180005731.01.T01:CDS
AGTTGCAAAACCTCTAGTTG+TGG 0.567026 1:-95393089 MsG0180005731.01.T01:CDS
ATCCATGCTTCAAGATGTGG+TGG 0.574463 1:-95394086 MsG0180005731.01.T01:CDS
GAGTATGACATGGAGGTGAT+TGG 0.583214 1:-95394921 MsG0180005731.01.T01:CDS
TCTGATCATGATTCATGATG+AGG 0.583455 1:+95394835 None:intergenic
CGCGAGCTATCAAAAGTCGC+AGG 0.584140 1:-95392792 MsG0180005731.01.T01:CDS
TCTCCAACAAAGGTCTTGGT+GGG 0.597564 1:+95392610 None:intergenic
ATGACATGGAGGTGATTGGC+CGG 0.599011 1:-95394917 MsG0180005731.01.T01:CDS
CTAAAGCAAGAGAAGTTGGA+AGG 0.600540 1:-95392206 MsG0180005731.01.T01:exon
GCACTGCCATCCACAACTAG+AGG 0.603312 1:+95393079 None:intergenic
AAGCATATAACTAGCTACAA+AGG 0.610187 1:+95391730 None:intergenic
GCAAAACCTCTAGTTGTGGA+TGG 0.613529 1:-95393085 MsG0180005731.01.T01:CDS
CTAAACTTATCTGAGTGCAA+TGG 0.614593 1:-95394061 MsG0180005731.01.T01:intron
TAAACTGGCACGAAATGCCA+AGG 0.616821 1:-95391835 MsG0180005731.01.T01:three_prime_UTR
AACTCTTGTAGAACCAGTGG+AGG 0.639928 1:+95393001 None:intergenic
AGGATCAAGAACGAATACAT+CGG 0.641347 1:+95394141 None:intergenic
ACAAACTCTTGTAGAACCAG+TGG 0.644820 1:+95392998 None:intergenic
TTGTAATAACTAGCTGACGA+GGG 0.649097 1:+95393750 None:intergenic
GATTCGTGAATATGGGACCA+AGG 0.655124 1:-95392445 MsG0180005731.01.T01:CDS
GGGAATACATAAAGGTTGTG+AGG 0.657084 1:-95392842 MsG0180005731.01.T01:CDS
GGGAGTTGAGTATGACATGG+AGG 0.666502 1:-95394928 MsG0180005731.01.T01:CDS
TTTGTAATAACTAGCTGACG+AGG 0.667968 1:+95393749 None:intergenic
AAATGTTGAATTGCATCAGG+AGG 0.678092 1:+95394121 None:intergenic
TGTGTGGTATCCAGAAGATG+TGG 0.719199 1:+95394890 None:intergenic
AAATTATGTCAGAAGTTGTG+TGG 0.741730 1:+95394874 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATGTAATTACTAATT+AGG - Chr1:95392365-95392384 MsG0180005731.01.T01:intron 10.0%
!! AAATATGTAATTACTAATTA+GGG - Chr1:95392366-95392385 MsG0180005731.01.T01:intron 10.0%
!!! AATTAGTAATTACATATTTT+CGG + Chr1:95392365-95392384 None:intergenic 10.0%
!!! TTTTTTAACTTTTTGTTTTA+CGG - Chr1:95394302-95394321 MsG0180005731.01.T01:intron 10.0%
!! AAAATTGAAAGGAAAAAAAA+CGG + Chr1:95393523-95393542 None:intergenic 15.0%
!! AACTTGAAAAAATGAAAAAA+AGG + Chr1:95392788-95392807 None:intergenic 15.0%
!! CTTCATAAATATTTGAAAAT+AGG + Chr1:95394542-95394561 None:intergenic 15.0%
!! TATTGTAATTTATCTATTCA+TGG + Chr1:95392299-95392318 None:intergenic 15.0%
!! TTAATCTAAATAATTTGGTT+AGG - Chr1:95391880-95391899 MsG0180005731.01.T01:three_prime_UTR 15.0%
!!! CTAAAATATTTGTTGAAATA+TGG - Chr1:95394831-95394850 MsG0180005731.01.T01:CDS 15.0%
!!! CTATTTTCAAATATTTATGA+AGG - Chr1:95394540-95394559 MsG0180005731.01.T01:intron 15.0%
!!! TCTTTAAGATTTATATTGTT+GGG - Chr1:95393771-95393790 MsG0180005731.01.T01:intron 15.0%
!! AAATCCTTCATTAATGAAAA+AGG + Chr1:95392459-95392478 None:intergenic 20.0%
!! AATCCTTCATTAATGAAAAA+GGG + Chr1:95392458-95392477 None:intergenic 20.0%
!! AATCGTTAGTATTATTAGTT+TGG - Chr1:95391685-95391704 MsG0180005731.01.T01:three_prime_UTR 20.0%
!! ATCAAATTTCTTAAAGAACA+AGG - Chr1:95392044-95392063 MsG0180005731.01.T01:three_prime_UTR 20.0%
!! CATTTGGTATATAACATTAT+TGG + Chr1:95392100-95392119 None:intergenic 20.0%
!! GTATATTATATACTAGCTAT+TGG - Chr1:95393049-95393068 MsG0180005731.01.T01:CDS 20.0%
!! TGTGGTTAATCTAAATAATT+TGG - Chr1:95391875-95391894 MsG0180005731.01.T01:three_prime_UTR 20.0%
!!! ATCGTTAGTATTATTAGTTT+GGG - Chr1:95391686-95391705 MsG0180005731.01.T01:three_prime_UTR 20.0%
!!! CTCTTTAAGATTTATATTGT+TGG - Chr1:95393770-95393789 MsG0180005731.01.T01:intron 20.0%
!!! CTTGTTTTCCTTTTTTATTT+GGG - Chr1:95393730-95393749 MsG0180005731.01.T01:CDS 20.0%
!!! CTTTAAGATTTATATTGTTG+GGG - Chr1:95393772-95393791 MsG0180005731.01.T01:intron 20.0%
!!! TCAACTATTTTTGTACTTTT+TGG - Chr1:95392745-95392764 MsG0180005731.01.T01:CDS 20.0%
!!! TCTTGTTTTCCTTTTTTATT+TGG - Chr1:95393729-95393748 MsG0180005731.01.T01:CDS 20.0%
! AAAGTTTGCACTACTTTATT+TGG + Chr1:95394932-95394951 None:intergenic 25.0%
! AATAATACATTAAGTACACG+AGG - Chr1:95392198-95392217 MsG0180005731.01.T01:three_prime_UTR 25.0%
! AGTTGAAATGTTTCATCTTA+TGG + Chr1:95393978-95393997 None:intergenic 25.0%
! ATCCTTCATTAATGAAAAAG+GGG + Chr1:95392457-95392476 None:intergenic 25.0%
! ATCTATAAAATAACCAGACA+CGG + Chr1:95392126-95392145 None:intergenic 25.0%
! ATTGATATCAATTACTTTCC+TGG - Chr1:95394226-95394245 MsG0180005731.01.T01:CDS 25.0%
! CTAAATAGTAAACCAATCTT+TGG + Chr1:95393383-95393402 None:intergenic 25.0%
! CTAGAATATATCTGGTTAAT+AGG - Chr1:95393016-95393035 MsG0180005731.01.T01:CDS 25.0%
! GTTTATAGACAATGTTGTTA+AGG + Chr1:95394784-95394803 None:intergenic 25.0%
! TAAATAATTTGGTTAGGCAT+TGG - Chr1:95391886-95391905 MsG0180005731.01.T01:three_prime_UTR 25.0%
! TAACAACATTGTCTATAAAC+TGG - Chr1:95394784-95394803 MsG0180005731.01.T01:intron 25.0%
! TAGATATGATTCGTGAATAT+GGG - Chr1:95394182-95394201 MsG0180005731.01.T01:CDS 25.0%
! TTTCATTAATGAAGGATTTC+AGG - Chr1:95392460-95392479 MsG0180005731.01.T01:CDS 25.0%
! TTTGCAACTGAAAAATTGAA+AGG + Chr1:95393534-95393553 None:intergenic 25.0%
!! AAAAAGTCAAATTTCTGAAG+AGG + Chr1:95392235-95392254 None:intergenic 25.0%
!! ATAACAGTGTTGTTAAATAG+CGG - Chr1:95393104-95393123 MsG0180005731.01.T01:intron 25.0%
!! TTGACAACATTTTGTACAAA+TGG + Chr1:95393188-95393207 None:intergenic 25.0%
!!! CTTAACTACTGTTGTTTTAT+AGG - Chr1:95392849-95392868 MsG0180005731.01.T01:CDS 25.0%
!!! TTGTTTTATTAGCCAAAGAT+TGG - Chr1:95393368-95393387 MsG0180005731.01.T01:intron 25.0%
AAATTATGTCAGAAGTTGTG+TGG + Chr1:95391763-95391782 None:intergenic 30.0%
AAGCATATAACTAGCTACAA+AGG + Chr1:95394907-95394926 None:intergenic 30.0%
AATAACACACAGAATGATTG+CGG + Chr1:95393691-95393710 None:intergenic 30.0%
AATAGAATGTTCATGCTTAG+TGG - Chr1:95394731-95394750 MsG0180005731.01.T01:intron 30.0%
AATCAAAGATACACACCTAA+CGG + Chr1:95392966-95392985 None:intergenic 30.0%
AATCTTCTGATTATCCTGAT+TGG - Chr1:95393436-95393455 MsG0180005731.01.T01:intron 30.0%
AATGACATAAAACACATCCT+TGG + Chr1:95394209-95394228 None:intergenic 30.0%
AATTTCTTAAAGAACAAGGC+TGG - Chr1:95392048-95392067 MsG0180005731.01.T01:three_prime_UTR 30.0%
ACAGACAATAATTCGTTCTT+TGG + Chr1:95391925-95391944 None:intergenic 30.0%
ACTATCACAATAATATGGCA+TGG - Chr1:95392019-95392038 MsG0180005731.01.T01:three_prime_UTR 30.0%
ACTTCATAAGGAATAGTAGA+TGG + Chr1:95392921-95392940 None:intergenic 30.0%
ACTTGTTTGAATACTTGGTT+TGG + Chr1:95391842-95391861 None:intergenic 30.0%
AGATATAATGAAAGCTGCAT+CGG - Chr1:95392146-95392165 MsG0180005731.01.T01:three_prime_UTR 30.0%
AGCATGAACATTCTATTCAT+TGG + Chr1:95394728-95394747 None:intergenic 30.0%
ATATCCGAATGATACAAACA+AGG + Chr1:95393336-95393355 None:intergenic 30.0%
ATCTATTCATGGAACTATTC+AGG + Chr1:95392288-95392307 None:intergenic 30.0%
ATCTTCTGATTATCCTGATT+GGG - Chr1:95393437-95393456 MsG0180005731.01.T01:intron 30.0%
CAGACAATAATTCGTTCTTT+GGG + Chr1:95391924-95391943 None:intergenic 30.0%
CCATCAAAATACAAACTTCA+TGG + Chr1:95392416-95392435 None:intergenic 30.0%
CTTGTTTGAATACTTGGTTT+GGG + Chr1:95391841-95391860 None:intergenic 30.0%
GCTATGAATATTTGGAAGAA+AGG + Chr1:95392339-95392358 None:intergenic 30.0%
GTACAATCCTAAAACTTTCA+GGG + Chr1:95392654-95392673 None:intergenic 30.0%
GTAGATATGATTCGTGAATA+TGG - Chr1:95394181-95394200 MsG0180005731.01.T01:CDS 30.0%
TACAAACTTCATGGAGAATT+TGG + Chr1:95392407-95392426 None:intergenic 30.0%
TACAATCCTAAAACTTTCAG+GGG + Chr1:95392653-95392672 None:intergenic 30.0%
TAGCGACTATCACAATAATA+TGG - Chr1:95392014-95392033 MsG0180005731.01.T01:three_prime_UTR 30.0%
TATAACTTATCTGCATTCCA+TGG - Chr1:95394253-95394272 MsG0180005731.01.T01:intron 30.0%
TATTGTTGGGGAATACATAA+AGG - Chr1:95393784-95393803 MsG0180005731.01.T01:intron 30.0%
TCTCTAGACTAGAATATATC+TGG - Chr1:95393008-95393027 MsG0180005731.01.T01:CDS 30.0%
TGAAATGTTTCATCTTATGG+TGG + Chr1:95393975-95393994 None:intergenic 30.0%
TGCAATGTCCCAAATAAAAA+AGG + Chr1:95393741-95393760 None:intergenic 30.0%
TGTAAATGTTGAATTGCATC+AGG + Chr1:95392519-95392538 None:intergenic 30.0%
TGTACAATCCTAAAACTTTC+AGG + Chr1:95392655-95392674 None:intergenic 30.0%
! ACGAATTATTGTCTGTCTTT+TGG - Chr1:95391929-95391948 MsG0180005731.01.T01:three_prime_UTR 30.0%
! AGAACCTTGTTTGTATCATT+CGG - Chr1:95393329-95393348 MsG0180005731.01.T01:intron 30.0%
! ATATTTGAAACAACCCAATC+AGG + Chr1:95393453-95393472 None:intergenic 30.0%
! TTGTTTGAATACTTGGTTTG+GGG + Chr1:95391840-95391859 None:intergenic 30.0%
!! AGGTACTTTTTGGTAGAAAT+TGG + Chr1:95394887-95394906 None:intergenic 30.0%
!! CCATGAAGTTTGTATTTTGA+TGG - Chr1:95392413-95392432 MsG0180005731.01.T01:CDS 30.0%
!! GGTACTTTTTGGTAGAAATT+GGG + Chr1:95394886-95394905 None:intergenic 30.0%
!! TTCCCCTTTTTCATTAATGA+AGG - Chr1:95392452-95392471 MsG0180005731.01.T01:CDS 30.0%
!!! GAATTTTTTTGGAATCTCAC+CGG + Chr1:95393939-95393958 None:intergenic 30.0%
!!! TATTTTAGCAGCATTATCCT+TGG + Chr1:95394819-95394838 None:intergenic 30.0%
!!! TTTTTTATTTGGGACATTGC+AGG - Chr1:95393740-95393759 MsG0180005731.01.T01:CDS 30.0%
AAAAGAGCTTCGTCATAGAT+TGG - Chr1:95394054-95394073 MsG0180005731.01.T01:intron 35.0%
AAATGTTGAATTGCATCAGG+AGG + Chr1:95392516-95392535 None:intergenic 35.0%
AATGTTTCATCTTATGGTGG+TGG + Chr1:95393972-95393991 None:intergenic 35.0%
ACCAAGTATTCAAACAAGTG+AGG - Chr1:95391843-95391862 MsG0180005731.01.T01:three_prime_UTR 35.0%
AGGATCAAGAACGAATACAT+CGG + Chr1:95392496-95392515 None:intergenic 35.0%
CACATGAAACTCTTGGAAAA+CGG + Chr1:95393874-95393893 None:intergenic 35.0%
CTAAACTTATCTGAGTGCAA+TGG - Chr1:95392573-95392592 MsG0180005731.01.T01:intron 35.0%
CTACAAGAGTTTGTCAATCA+TGG - Chr1:95393645-95393664 MsG0180005731.01.T01:intron 35.0%
GCAGATAAGTTATACTTACC+AGG + Chr1:95394247-95394266 None:intergenic 35.0%
GTATTAGTAAATCATCGCCT+AGG + Chr1:95394121-95394140 None:intergenic 35.0%
TATTCATGGAACTATTCAGG+AGG + Chr1:95392285-95392304 None:intergenic 35.0%
TCCTCACTTGTTTGAATACT+TGG + Chr1:95391847-95391866 None:intergenic 35.0%
TCTGATCATGATTCATGATG+AGG + Chr1:95391802-95391821 None:intergenic 35.0%
TCTTACACTTGTTCTGCTTT+AGG + Chr1:95394395-95394414 None:intergenic 35.0%
TGCAACCATATTTCTTTCCT+AGG - Chr1:95394101-95394120 MsG0180005731.01.T01:CDS 35.0%
TTCGGTGAGCTATGAATATT+TGG + Chr1:95392347-95392366 None:intergenic 35.0%
TTGTAATAACTAGCTGACGA+GGG + Chr1:95392887-95392906 None:intergenic 35.0%
TTGTCAAATAGCAGCTATAG+CGG - Chr1:95393201-95393220 MsG0180005731.01.T01:intron 35.0%
TTTGTAATAACTAGCTGACG+AGG + Chr1:95392888-95392907 None:intergenic 35.0%
TTTGTACAAATGGCATATCG+TGG + Chr1:95393178-95393197 None:intergenic 35.0%
! ATTTTTCCATACCCTGCATT+CGG + Chr1:95394333-95394352 None:intergenic 35.0%
!! ATAATTTGGTTAGGCATTGG+TGG - Chr1:95391889-95391908 MsG0180005731.01.T01:three_prime_UTR 35.0%
!! CAAGTGAGGATTTACTTTTG+TGG - Chr1:95391857-95391876 MsG0180005731.01.T01:three_prime_UTR 35.0%
!! CAAGTTGATTATGTATCGCA+TGG - Chr1:95392802-95392821 MsG0180005731.01.T01:CDS 35.0%
!! TGTTTGAATACTTGGTTTGG+GGG + Chr1:95391839-95391858 None:intergenic 35.0%
!!! AGTTGACTTGTGCATTTTCA+TGG - Chr1:95393405-95393424 MsG0180005731.01.T01:intron 35.0%
!!! CTACTGTTGTTTTATAGGCA+AGG - Chr1:95392854-95392873 MsG0180005731.01.T01:CDS 35.0%
!!! CTAGCTACAAAGGTACTTTT+TGG + Chr1:95394897-95394916 None:intergenic 35.0%
!!! TGTATTTTGATGGAGCTGAT+TGG - Chr1:95392423-95392442 MsG0180005731.01.T01:CDS 35.0%
!!! TGTTGTTTTATAGGCAAGGT+TGG - Chr1:95392858-95392877 MsG0180005731.01.T01:CDS 35.0%
ACAAACTCTTGTAGAACCAG+TGG + Chr1:95393639-95393658 None:intergenic 40.0%
AGCTCGCGTTTACTGATATT+AGG + Chr1:95393830-95393849 None:intergenic 40.0%
AGTTGCAAAACCTCTAGTTG+TGG - Chr1:95393545-95393564 MsG0180005731.01.T01:intron 40.0%
ATAATGAAAGCTGCATCGGA+GGG - Chr1:95392150-95392169 MsG0180005731.01.T01:three_prime_UTR 40.0%
CATCGCCTAGGAAAGAAATA+TGG + Chr1:95394109-95394128 None:intergenic 40.0%
CATTAAGTACACGAGGAATC+TGG - Chr1:95392205-95392224 MsG0180005731.01.T01:three_prime_UTR 40.0%
CGTACATCTTGCTCTTGTAT+TGG - Chr1:95392713-95392732 MsG0180005731.01.T01:intron 40.0%
CTAAAACTTTCAGGGGAGAT+TGG + Chr1:95392646-95392665 None:intergenic 40.0%
CTAAAGCAAGAGAAGTTGGA+AGG - Chr1:95394428-95394447 MsG0180005731.01.T01:intron 40.0%
CTTATGAAGTCACCAAAGCT+GGG - Chr1:95392931-95392950 MsG0180005731.01.T01:intron 40.0%
CTTCCAACTTCTCTTGCTTT+AGG + Chr1:95394430-95394449 None:intergenic 40.0%
GAATTGCAATGCCGTCTATA+GGG - Chr1:95394142-95394161 MsG0180005731.01.T01:CDS 40.0%
GATCTTGATCCTAGTATTGC+CGG - Chr1:95393917-95393936 MsG0180005731.01.T01:intron 40.0%
GGATCAAGAACGAATACATC+GGG + Chr1:95392495-95392514 None:intergenic 40.0%
GGGAATACATAAAGGTTGTG+AGG - Chr1:95393792-95393811 MsG0180005731.01.T01:intron 40.0%
TATAATGAAAGCTGCATCGG+AGG - Chr1:95392149-95392168 MsG0180005731.01.T01:three_prime_UTR 40.0%
TGAATTGCAATGCCGTCTAT+AGG - Chr1:95394141-95394160 MsG0180005731.01.T01:CDS 40.0%
TTGATTTCTGTCAGAGACCA+TGG + Chr1:95394273-95394292 None:intergenic 40.0%
TTTGGGAGTTGAGTATGACA+TGG - Chr1:95391703-95391722 MsG0180005731.01.T01:three_prime_UTR 40.0%
! CAATCTCCCCTGAAAGTTTT+AGG - Chr1:95392644-95392663 MsG0180005731.01.T01:intron 40.0%
! TTACGGTTTTTCCGAATGCA+GGG - Chr1:95394319-95394338 MsG0180005731.01.T01:intron 40.0%
! TTTACGGTTTTTCCGAATGC+AGG - Chr1:95394318-95394337 MsG0180005731.01.T01:intron 40.0%
! TTTATTTGGGACATTGCAGG+TGG - Chr1:95393743-95393762 MsG0180005731.01.T01:CDS 40.0%
!! TAGCAGCTATAGCGGATTAA+CGG - Chr1:95393209-95393228 MsG0180005731.01.T01:intron 40.0%
!! TTTCATCTTATGGTGGTGGT+GGG + Chr1:95393968-95393987 None:intergenic 40.0%
!!! GTGGGAAAGGGGAATTTTTT+TGG + Chr1:95393950-95393969 None:intergenic 40.0%
AACCAATCAATGCCGCAGAA+AGG + Chr1:95393077-95393096 None:intergenic 45.0%
AACTCTTGTAGAACCAGTGG+AGG + Chr1:95393636-95393655 None:intergenic 45.0%
ACAAGCGAAGTCCCTATAGA+CGG + Chr1:95394156-95394175 None:intergenic 45.0%
ATACCAAATGCAACCGTGTC+TGG - Chr1:95392110-95392129 MsG0180005731.01.T01:three_prime_UTR 45.0%
ATCCACCACATCTTGAAGCA+TGG + Chr1:95392553-95392572 None:intergenic 45.0%
ATCCAGAAGATGTGGTTGTC+CGG + Chr1:95391739-95391758 None:intergenic 45.0%
ATCCATGCTTCAAGATGTGG+TGG - Chr1:95392548-95392567 MsG0180005731.01.T01:intron 45.0%
CCAATCCATGCTTCAAGATG+TGG - Chr1:95392545-95392564 MsG0180005731.01.T01:intron 45.0%
CCACATCTTGAAGCATGGAT+TGG + Chr1:95392548-95392567 None:intergenic 45.0%
CCTTATGAAGTCACCAAAGC+TGG - Chr1:95392930-95392949 MsG0180005731.01.T01:intron 45.0%
CTGCCTAAAGCAAGAGAAGT+TGG - Chr1:95394424-95394443 MsG0180005731.01.T01:intron 45.0%
GAGTATGACATGGAGGTGAT+TGG - Chr1:95391713-95391732 MsG0180005731.01.T01:three_prime_UTR 45.0%
GATGACTAACTTCTGACAGC+TGG - Chr1:95392172-95392191 MsG0180005731.01.T01:three_prime_UTR 45.0%
GATTCGTGAATATGGGACCA+AGG - Chr1:95394189-95394208 MsG0180005731.01.T01:CDS 45.0%
GCAAAACCTCTAGTTGTGGA+TGG - Chr1:95393549-95393568 MsG0180005731.01.T01:intron 45.0%
GTGTTGTCAATAGCAGGTCA+CGG + Chr1:95393281-95393300 None:intergenic 45.0%
TAAACTGGCACGAAATGCCA+AGG - Chr1:95394799-95394818 MsG0180005731.01.T01:CDS 45.0%
TAACCAGACACGGTTGCATT+TGG + Chr1:95392116-95392135 None:intergenic 45.0%
TAGCTATTGGCACCTTTCTG+CGG - Chr1:95393062-95393081 MsG0180005731.01.T01:CDS 45.0%
TCTCCAACAAAGGTCTTGGT+GGG + Chr1:95394027-95394046 None:intergenic 45.0%
TGACCTGCTATTGACAACAC+TGG - Chr1:95393281-95393300 MsG0180005731.01.T01:intron 45.0%
TGGTAGAAATTGGGACAGAG+TGG + Chr1:95394877-95394896 None:intergenic 45.0%
TGTGTGGTATCCAGAAGATG+TGG + Chr1:95391747-95391766 None:intergenic 45.0%
TTTGCAAGCCTCTCCAACAA+AGG + Chr1:95394037-95394056 None:intergenic 45.0%
! CCAGCTTTGGTGACTTCATA+AGG + Chr1:95392933-95392952 None:intergenic 45.0%
! GTTTTTCCGAATGCAGGGTA+TGG - Chr1:95394324-95394343 MsG0180005731.01.T01:intron 45.0%
!! CATCTTGAAGCATGGATTGG+CGG + Chr1:95392545-95392564 None:intergenic 45.0%
!! GTTTCATCTTATGGTGGTGG+TGG + Chr1:95393969-95393988 None:intergenic 45.0%
ACACCCACCAAGACCTTTGT+TGG - Chr1:95394021-95394040 MsG0180005731.01.T01:intron 50.0%
AGCCTCTCCAACAAAGGTCT+TGG + Chr1:95394031-95394050 None:intergenic 50.0%
ATGACATGGAGGTGATTGGC+CGG - Chr1:95391717-95391736 MsG0180005731.01.T01:three_prime_UTR 50.0%
CACCAAGACCTTTGTTGGAG+AGG - Chr1:95394026-95394045 MsG0180005731.01.T01:intron 50.0%
CTCTCCAACAAAGGTCTTGG+TGG + Chr1:95394028-95394047 None:intergenic 50.0%
GAGCCAGTGTTGTCAATAGC+AGG + Chr1:95393287-95393306 None:intergenic 50.0%
GCTGCTGCACATGAAACTCT+TGG + Chr1:95393881-95393900 None:intergenic 50.0%
GCTGGCTGAGCTTATAGGTT+AGG - Chr1:95392066-95392085 MsG0180005731.01.T01:three_prime_UTR 50.0%
GGAATCTCACCGGCAATACT+AGG + Chr1:95393929-95393948 None:intergenic 50.0%
GGGAGTTGAGTATGACATGG+AGG - Chr1:95391706-95391725 MsG0180005731.01.T01:three_prime_UTR 50.0%
GTAAAGACGTGCTCGTAGTC+TGG + Chr1:95394357-95394376 None:intergenic 50.0%
TTCAGAGCTTGAACCTCCAC+TGG - Chr1:95393620-95393639 MsG0180005731.01.T01:intron 50.0%
! ACAAGGCTGGCTGAGCTTAT+AGG - Chr1:95392061-95392080 MsG0180005731.01.T01:three_prime_UTR 50.0%
!! AGCGGATTAACGGCGCTATA+GGG - Chr1:95393219-95393238 MsG0180005731.01.T01:intron 50.0%
!! CACCTTTCTGCGGCATTGAT+TGG - Chr1:95393072-95393091 MsG0180005731.01.T01:CDS 50.0%
!! CTTATGGTGGTGGTGGGAAA+GGG + Chr1:95393962-95393981 None:intergenic 50.0%
!! TAGCGGATTAACGGCGCTAT+AGG - Chr1:95393218-95393237 MsG0180005731.01.T01:intron 50.0%
!! TCTTATGGTGGTGGTGGGAA+AGG + Chr1:95393963-95393982 None:intergenic 50.0%
!! TTATGGTGGTGGTGGGAAAG+GGG + Chr1:95393961-95393980 None:intergenic 50.0%
ATAGCAGCGCTACAGCACAG+TGG - Chr1:95393129-95393148 MsG0180005731.01.T01:intron 55.0%
CGCGAGCTATCAAAAGTCGC+AGG - Chr1:95393842-95393861 MsG0180005731.01.T01:intron 55.0%
CGGCAACTTCAACCCAGCTT+TGG + Chr1:95392946-95392965 None:intergenic 55.0%
GCACTGCCATCCACAACTAG+AGG + Chr1:95393558-95393577 None:intergenic 55.0%
! GCTGGGTTGAAGTTGCCGTT+AGG - Chr1:95392948-95392967 MsG0180005731.01.T01:intron 55.0%
GGCCGGACAACCACATCTTC+TGG - Chr1:95391734-95391753 MsG0180005731.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 95391671 95394985 95391671 ID=MsG0180005731.01;Name=MsG0180005731.01
Chr1 mRNA 95391671 95394985 95391671 ID=MsG0180005731.01.T01;Parent=MsG0180005731.01;Name=MsG0180005731.01.T01;_AED=0.44;_eAED=0.46;_QI=0|0.85|0.75|1|0.85|0.75|8|554|341
Chr1 exon 95391671 95392316 95391671 ID=MsG0180005731.01.T01:exon:10472;Parent=MsG0180005731.01.T01
Chr1 exon 95392409 95392493 95392409 ID=MsG0180005731.01.T01:exon:10471;Parent=MsG0180005731.01.T01
Chr1 exon 95392581 95392636 95392581 ID=MsG0180005731.01.T01:exon:10470;Parent=MsG0180005731.01.T01
Chr1 exon 95392718 95392894 95392718 ID=MsG0180005731.01.T01:exon:10469;Parent=MsG0180005731.01.T01
Chr1 exon 95392990 95393109 95392990 ID=MsG0180005731.01.T01:exon:10468;Parent=MsG0180005731.01.T01
Chr1 exon 95393687 95393785 95393687 ID=MsG0180005731.01.T01:exon:10467;Parent=MsG0180005731.01.T01
Chr1 exon 95394062 95394269 95394062 ID=MsG0180005731.01.T01:exon:10466;Parent=MsG0180005731.01.T01
Chr1 exon 95394797 95394985 95394797 ID=MsG0180005731.01.T01:exon:10465;Parent=MsG0180005731.01.T01
Chr1 CDS 95394797 95394985 95394797 ID=MsG0180005731.01.T01:cds;Parent=MsG0180005731.01.T01
Chr1 CDS 95394062 95394269 95394062 ID=MsG0180005731.01.T01:cds;Parent=MsG0180005731.01.T01
Chr1 CDS 95393687 95393785 95393687 ID=MsG0180005731.01.T01:cds;Parent=MsG0180005731.01.T01
Chr1 CDS 95392990 95393109 95392990 ID=MsG0180005731.01.T01:cds;Parent=MsG0180005731.01.T01
Chr1 CDS 95392718 95392894 95392718 ID=MsG0180005731.01.T01:cds;Parent=MsG0180005731.01.T01
Chr1 CDS 95392581 95392636 95392581 ID=MsG0180005731.01.T01:cds;Parent=MsG0180005731.01.T01
Chr1 CDS 95392409 95392493 95392409 ID=MsG0180005731.01.T01:cds;Parent=MsG0180005731.01.T01
Chr1 CDS 95392225 95392316 95392225 ID=MsG0180005731.01.T01:cds;Parent=MsG0180005731.01.T01
Chr1 three_prime_UTR 95391671 95392224 95391671 ID=MsG0180005731.01.T01:three_prime_utr;Parent=MsG0180005731.01.T01
Gene Sequence

>MsG0180005731.01.T01

ATGGTATTGTATGAAATCGTTAGTATTATTAGTTTGGGAGTTGAGTATGACATGGAGGTGATTGGCCGGACAACCACATCTTCTGGATACCACACAACTTCTGACATAATTTGCAGAGTTCTTGCTCTCCTCATCATGAATCATGATCAGATAGTTGAAATCAGTCCCCCAAACCAAGTATTCAAACAAGGATTGCTTCATGCTTTCCAAATTCTCCATGAAGTTTGTATTTTGATGGAGCTGATTGGACTTCTTTCCCCTTTTTCATTAATGAAGGATTTCAGGCAAAAACATCCCGATGTATTCGTTCTTGATCCTCCTGATGCAATTCAACATTTACACAACCGCCAATCCATGCTTCAAGATGTGGTGGATCTAAACTTATCTGAGTGCAATGGCAAGGTTGGCATCCCTCGTCAGCTAGTTATTACAAAAGACAAAGATCCATCTACTATTCCTTATGAAGTCACCAAAGCTGGGTTGAAGTTGCCGTTAGTTGCAAAACCTCTAGTTGTGGATGGCAGTGCAAAGTCGCATGAACTATTTCTTGCTTATGACGAGTTCTCTCTTTCAGAGCTTGAACCTCCACTGGTTCTACAAGAGTTTGTCAATCATGGTGGTCTTCTCTTTAAGATTTATATTGTTGGGGAATACATAAAGGTTGTGAGGCGTTTCTCTCTTCCTAATATCAGTAAACGCGAGCTATCAAAAGTCGCAGGTGTATACCGTTTTCCAAGAGTTTCATGTGCAGCAGCTTCTGCAGATGAAGCTGATCTTGATCCTAGTATTGCCGAACACCCACCAAGACCTTTGTTGGAGAGGCTTGCAAAAGAGCTTCGTCATAGATTGGGACTTCGCTTGTTCAACGTAGATATGATTCGTGAATATGGGACCAAGGATGTGTTTTATGTCATTGATATCAATTACTTTCCTGGGTATGGAAAAATGCCAGACTACGAGCACGTCTTTACAGATTTTCTACTTAACCTAAAGCAGAACAAGTGTAAGAAGAAACTTACTGCCTAA

Protein sequence

>MsG0180005731.01.T01

MVLYEIVSIISLGVEYDMEVIGRTTTSSGYHTTSDIICRVLALLIMNHDQIVEISPPNQVFKQGLLHAFQILHEVCILMELIGLLSPFSLMKDFRQKHPDVFVLDPPDAIQHLHNRQSMLQDVVDLNLSECNGKVGIPRQLVITKDKDPSTIPYEVTKAGLKLPLVAKPLVVDGSAKSHELFLAYDEFSLSELEPPLVLQEFVNHGGLLFKIYIVGEYIKVVRRFSLPNISKRELSKVAGVYRFPRVSCAAASADEADLDPSIAEHPPRPLLERLAKELRHRLGLRLFNVDMIREYGTKDVFYVIDINYFPGYGKMPDYEHVFTDFLLNLKQNKCKKKLTA*