AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005729.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005729.01.T01 MTR_1g105930 89.736 341 6 1 1 341 1 312 0.0 585
MsG0180005729.01.T01 MTR_1g105930 97.619 252 6 0 90 341 91 342 0.0 509
MsG0180005729.01.T01 MTR_5g005370 79.283 251 50 1 86 334 55 305 7.31e-133 381
MsG0180005729.01.T01 MTR_5g005370 79.268 246 51 0 89 334 36 281 3.07e-132 379
MsG0180005729.01.T01 MTR_5g005370 79.592 245 50 0 90 334 72 316 4.43e-132 379
MsG0180005729.01.T01 MTR_5g005370 79.268 246 51 0 89 334 43 288 7.48e-132 378
MsG0180005729.01.T01 MTR_5g005370 79.268 246 51 0 90 335 72 317 4.77e-131 379
MsG0180005729.01.T01 MTR_8g066720 42.294 279 138 8 76 339 54 324 8.51e-62 202
MsG0180005729.01.T01 MTR_4g105690 42.742 248 133 4 91 332 69 313 1.57e-61 199
MsG0180005729.01.T01 MTR_3g067725 28.151 238 156 8 91 318 236 468 3.88e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005729.01.T01 AT4G08170 75.794 252 59 1 90 341 13 262 1.08e-129 371
MsG0180005729.01.T01 AT4G08170 75.794 252 59 1 90 341 101 350 3.55e-129 374
MsG0180005729.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005729.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005729.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005729.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005729.01.T01 AT4G08170 76.682 223 50 1 119 341 1 221 1.58e-113 329
MsG0180005729.01.T01 AT4G33770 65.462 249 84 1 90 338 48 294 4.70e-109 320
MsG0180005729.01.T01 AT4G33770 65.462 249 84 1 90 338 141 387 4.24e-108 321
MsG0180005729.01.T01 AT4G33770 66.364 220 72 1 119 338 1 218 1.15e-94 281
MsG0180005729.01.T01 AT5G16760 40.690 290 154 6 51 334 39 316 1.92e-64 207
MsG0180005729.01.T01 AT2G43980 28.736 174 118 4 148 318 295 465 1.07e-15 78.2

Find 83 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGTTTGCACTACTTTATT+TGG 0.121328 1:+95377149 None:intergenic
TACAAACTTCATGGAGAATT+TGG 0.129435 1:+95379673 None:intergenic
CTTCATAAATATTTGAAAAT+AGG 0.164201 1:+95377539 None:intergenic
AAATCCTTCATTAATGAAAA+AGG 0.178226 1:+95379621 None:intergenic
CTAAAATATTTGTTGAAATA+TGG 0.207446 1:-95377247 MsG0180005729.01.T01:three_prime_UTR
TCTTACACTTGTTCTGCTTT+AGG 0.209814 1:+95377686 None:intergenic
TTTCATTAATGAAGGATTTC+AGG 0.219791 1:-95379617 MsG0180005729.01.T01:CDS
GTAGATATGATTCGTGAATA+TGG 0.249264 1:-95377897 MsG0180005729.01.T01:CDS
AATCGTTAGTATTATTAGTT+TGG 0.257470 1:-95380391 MsG0180005729.01.T01:CDS
TCCTCACTTGTTTGAATACT+TGG 0.277969 1:+95380232 None:intergenic
ATTGATATCAATTACTTTCC+TGG 0.288993 1:-95377852 MsG0180005729.01.T01:intron
ACTTGTTTGAATACTTGGTT+TGG 0.321358 1:+95380237 None:intergenic
TCTTTAAGATTTATATTGTT+GGG 0.323070 1:-95378307 MsG0180005729.01.T01:CDS
CTTCCAACTTCTCTTGCTTT+AGG 0.340512 1:+95377651 None:intergenic
CTTGTTTGAATACTTGGTTT+GGG 0.341169 1:+95380238 None:intergenic
TATTGTTGGGGAATACATAA+AGG 0.342629 1:-95378294 MsG0180005729.01.T01:CDS
AGCATGAACATTCTATTCAT+TGG 0.350260 1:+95377353 None:intergenic
AATAGAATGTTCATGCTTAG+TGG 0.358768 1:-95377347 MsG0180005729.01.T01:three_prime_UTR
CTCTTTAAGATTTATATTGT+TGG 0.359704 1:-95378308 MsG0180005729.01.T01:CDS
CCATCAAAATACAAACTTCA+TGG 0.369216 1:+95379664 None:intergenic
ACACCCACCAAGACCTTTGT+TGG 0.369643 1:-95378057 MsG0180005729.01.T01:CDS
CCAGCTTTGGTGACTTCATA+AGG 0.370201 1:+95379147 None:intergenic
GGCCGGACAACCACATCTTC+TGG 0.373243 1:-95380342 MsG0180005729.01.T01:CDS
AGCTCGCGTTTACTGATATT+AGG 0.375570 1:+95378251 None:intergenic
TAACAACATTGTCTATAAAC+TGG 0.377901 1:-95377294 MsG0180005729.01.T01:three_prime_UTR
CCTTATGAAGTCACCAAAGC+TGG 0.387765 1:-95379147 MsG0180005729.01.T01:CDS
ATCGTTAGTATTATTAGTTT+GGG 0.392746 1:-95380390 MsG0180005729.01.T01:CDS
GGAATCTCACCGGCAATACT+AGG 0.399683 1:+95378152 None:intergenic
GTTTATAGACAATGTTGTTA+AGG 0.401644 1:+95377297 None:intergenic
GTAAAGACGTGCTCGTAGTC+TGG 0.410319 1:+95377724 None:intergenic
CGGCAACTTCAACCCAGCTT+TGG 0.416268 1:+95379134 None:intergenic
GATCTTGATCCTAGTATTGC+CGG 0.427389 1:-95378161 MsG0180005729.01.T01:intron
CTACAAGAGTTTGTCAATCA+TGG 0.430927 1:-95378433 MsG0180005729.01.T01:intron
TTCAGAGCTTGAACCTCCAC+TGG 0.437347 1:-95378458 MsG0180005729.01.T01:CDS
ACTTCATAAGGAATAGTAGA+TGG 0.444777 1:+95379159 None:intergenic
AGCCTCTCCAACAAAGGTCT+TGG 0.445162 1:+95378050 None:intergenic
AAAAGAGCTTCGTCATAGAT+TGG 0.446522 1:-95378024 MsG0180005729.01.T01:intron
CTGCCTAAAGCAAGAGAAGT+TGG 0.446556 1:-95377654 MsG0180005729.01.T01:exon
ATCCAGAAGATGTGGTTGTC+CGG 0.458056 1:+95380340 None:intergenic
CTCTCCAACAAAGGTCTTGG+TGG 0.458592 1:+95378053 None:intergenic
TAGATATGATTCGTGAATAT+GGG 0.470110 1:-95377896 MsG0180005729.01.T01:CDS
GCTGCTGCACATGAAACTCT+TGG 0.473192 1:+95378200 None:intergenic
TGTAAATGTTGAATTGCATC+AGG 0.481257 1:+95379561 None:intergenic
CACATGAAACTCTTGGAAAA+CGG 0.483083 1:+95378207 None:intergenic
CACCAAGACCTTTGTTGGAG+AGG 0.502650 1:-95378052 MsG0180005729.01.T01:CDS
TTGTTTGAATACTTGGTTTG+GGG 0.506145 1:+95380239 None:intergenic
TGTTTGAATACTTGGTTTGG+GGG 0.507717 1:+95380240 None:intergenic
GGATCAAGAACGAATACATC+GGG 0.519070 1:+95379585 None:intergenic
CCACATCTTGAAGCATGGAT+TGG 0.521285 1:+95379532 None:intergenic
CATCTTGAAGCATGGATTGG+CGG 0.525990 1:+95379535 None:intergenic
CTTTAAGATTTATATTGTTG+GGG 0.527390 1:-95378306 MsG0180005729.01.T01:CDS
GCTGGGTTGAAGTTGCCGTT+AGG 0.530540 1:-95379129 MsG0180005729.01.T01:intron
TTTGCAAGCCTCTCCAACAA+AGG 0.530921 1:+95378044 None:intergenic
ATCCACCACATCTTGAAGCA+TGG 0.535346 1:+95379527 None:intergenic
AATGACATAAAACACATCCT+TGG 0.546362 1:+95377872 None:intergenic
TTTGGGAGTTGAGTATGACA+TGG 0.550445 1:-95380373 MsG0180005729.01.T01:CDS
CCAATCCATGCTTCAAGATG+TGG 0.557398 1:-95379532 MsG0180005729.01.T01:CDS
TGGTAGAAATTGGGACAGAG+TGG 0.560116 1:+95377204 None:intergenic
CTTATGAAGTCACCAAAGCT+GGG 0.565266 1:-95379146 MsG0180005729.01.T01:CDS
AGTTGCAAAACCTCTAGTTG+TGG 0.567026 1:-95378533 MsG0180005729.01.T01:CDS
ATCCATGCTTCAAGATGTGG+TGG 0.574463 1:-95379529 MsG0180005729.01.T01:CDS
GAGTATGACATGGAGGTGAT+TGG 0.583214 1:-95380363 MsG0180005729.01.T01:CDS
TCTGATCATGATTCATGATG+AGG 0.583455 1:+95380277 None:intergenic
CGCGAGCTATCAAAAGTCGC+AGG 0.584140 1:-95378236 MsG0180005729.01.T01:CDS
TCTCCAACAAAGGTCTTGGT+GGG 0.597564 1:+95378054 None:intergenic
ATGACATGGAGGTGATTGGC+CGG 0.599011 1:-95380359 MsG0180005729.01.T01:CDS
CTAAAGCAAGAGAAGTTGGA+AGG 0.600540 1:-95377650 MsG0180005729.01.T01:exon
GCACTGCCATCCACAACTAG+AGG 0.603312 1:+95378523 None:intergenic
AAGCATATAACTAGCTACAA+AGG 0.610187 1:+95377174 None:intergenic
GCAAAACCTCTAGTTGTGGA+TGG 0.613529 1:-95378529 MsG0180005729.01.T01:CDS
CTAAACTTATCTGAGTGCAA+TGG 0.614593 1:-95379504 MsG0180005729.01.T01:intron
TAAACTGGCACGAAATGCCA+AGG 0.616821 1:-95377279 MsG0180005729.01.T01:three_prime_UTR
AACTCTTGTAGAACCAGTGG+AGG 0.639928 1:+95378445 None:intergenic
AGGATCAAGAACGAATACAT+CGG 0.641347 1:+95379584 None:intergenic
ACAAACTCTTGTAGAACCAG+TGG 0.644820 1:+95378442 None:intergenic
TTGTAATAACTAGCTGACGA+GGG 0.649097 1:+95379193 None:intergenic
GATTCGTGAATATGGGACCA+AGG 0.655124 1:-95377889 MsG0180005729.01.T01:CDS
GGGAATACATAAAGGTTGTG+AGG 0.657084 1:-95378286 MsG0180005729.01.T01:CDS
GGGAGTTGAGTATGACATGG+AGG 0.666502 1:-95380370 MsG0180005729.01.T01:CDS
TTTGTAATAACTAGCTGACG+AGG 0.667968 1:+95379192 None:intergenic
AAATGTTGAATTGCATCAGG+AGG 0.678092 1:+95379564 None:intergenic
TGTGTGGTATCCAGAAGATG+TGG 0.719199 1:+95380332 None:intergenic
AAATTATGTCAGAAGTTGTG+TGG 0.741730 1:+95380316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATGTAATTACTAATT+AGG - Chr1:95377808-95377827 MsG0180005729.01.T01:intron 10.0%
!! AAATATGTAATTACTAATTA+GGG - Chr1:95377809-95377828 MsG0180005729.01.T01:intron 10.0%
!!! AATTAGTAATTACATATTTT+CGG + Chr1:95377808-95377827 None:intergenic 10.0%
!!! TTTTTTAACTTTTTGTTTTA+CGG - Chr1:95379744-95379763 MsG0180005729.01.T01:intron 10.0%
!! AAAATTGAAAGGAAAAAAAA+CGG + Chr1:95378966-95378985 None:intergenic 15.0%
!! AACTTGAAAAAATGAAAAAA+AGG + Chr1:95378231-95378250 None:intergenic 15.0%
!! CTTCATAAATATTTGAAAAT+AGG + Chr1:95379984-95380003 None:intergenic 15.0%
!! TATTGTAATTTATCTATTCA+TGG + Chr1:95377742-95377761 None:intergenic 15.0%
!! TTAATCTAAATAATTTGGTT+AGG - Chr1:95377324-95377343 MsG0180005729.01.T01:three_prime_UTR 15.0%
!!! CTAAAATATTTGTTGAAATA+TGG - Chr1:95380273-95380292 MsG0180005729.01.T01:CDS 15.0%
!!! CTATTTTCAAATATTTATGA+AGG - Chr1:95379982-95380001 MsG0180005729.01.T01:intron 15.0%
!!! TCTTTAAGATTTATATTGTT+GGG - Chr1:95379213-95379232 MsG0180005729.01.T01:intron 15.0%
!! AAATCCTTCATTAATGAAAA+AGG + Chr1:95377902-95377921 None:intergenic 20.0%
!! AATCCTTCATTAATGAAAAA+GGG + Chr1:95377901-95377920 None:intergenic 20.0%
!! AATCGTTAGTATTATTAGTT+TGG - Chr1:95377129-95377148 MsG0180005729.01.T01:three_prime_UTR 20.0%
!! ATCAAATTTCTTAAAGAACA+AGG - Chr1:95377487-95377506 MsG0180005729.01.T01:three_prime_UTR 20.0%
!! CATTTGGTATATAACATTAT+TGG + Chr1:95377543-95377562 None:intergenic 20.0%
!! GTATATTATATACTAGCTAT+TGG - Chr1:95378492-95378511 MsG0180005729.01.T01:CDS 20.0%
!! TGTGGTTAATCTAAATAATT+TGG - Chr1:95377319-95377338 MsG0180005729.01.T01:three_prime_UTR 20.0%
!!! ATCGTTAGTATTATTAGTTT+GGG - Chr1:95377130-95377149 MsG0180005729.01.T01:three_prime_UTR 20.0%
!!! CTCTTTAAGATTTATATTGT+TGG - Chr1:95379212-95379231 MsG0180005729.01.T01:intron 20.0%
!!! CTTGTTTTCCTTTTTTATTT+GGG - Chr1:95379172-95379191 MsG0180005729.01.T01:CDS 20.0%
!!! CTTTAAGATTTATATTGTTG+GGG - Chr1:95379214-95379233 MsG0180005729.01.T01:intron 20.0%
!!! TCAACTATTTTTGTACTTTT+TGG - Chr1:95378188-95378207 MsG0180005729.01.T01:CDS 20.0%
!!! TCTTGTTTTCCTTTTTTATT+TGG - Chr1:95379171-95379190 MsG0180005729.01.T01:CDS 20.0%
! AAAGTTTGCACTACTTTATT+TGG + Chr1:95380374-95380393 None:intergenic 25.0%
! AATAATACATTAAGTACACG+AGG - Chr1:95377641-95377660 MsG0180005729.01.T01:three_prime_UTR 25.0%
! AGTTGAAATGTTTCATCTTA+TGG + Chr1:95379420-95379439 None:intergenic 25.0%
! ATCCTTCATTAATGAAAAAG+GGG + Chr1:95377900-95377919 None:intergenic 25.0%
! ATCTATAAAATAACCAGACA+CGG + Chr1:95377569-95377588 None:intergenic 25.0%
! ATTGATATCAATTACTTTCC+TGG - Chr1:95379668-95379687 MsG0180005729.01.T01:CDS 25.0%
! CTAAATAGTAAACCAATCTT+TGG + Chr1:95378826-95378845 None:intergenic 25.0%
! CTAGAATATATCTGGTTAAT+AGG - Chr1:95378459-95378478 MsG0180005729.01.T01:CDS 25.0%
! GTTTATAGACAATGTTGTTA+AGG + Chr1:95380226-95380245 None:intergenic 25.0%
! TAAATAATTTGGTTAGGCAT+TGG - Chr1:95377330-95377349 MsG0180005729.01.T01:three_prime_UTR 25.0%
! TAACAACATTGTCTATAAAC+TGG - Chr1:95380226-95380245 MsG0180005729.01.T01:intron 25.0%
! TAGATATGATTCGTGAATAT+GGG - Chr1:95379624-95379643 MsG0180005729.01.T01:CDS 25.0%
! TTTCATTAATGAAGGATTTC+AGG - Chr1:95377903-95377922 MsG0180005729.01.T01:CDS 25.0%
!! AAAAAGTCAAATTTCTGAAG+AGG + Chr1:95377678-95377697 None:intergenic 25.0%
!! ATAACAGTGTTGTTAAATAG+CGG - Chr1:95378547-95378566 MsG0180005729.01.T01:intron 25.0%
!! TTGACAACATTTTGTACAAA+TGG + Chr1:95378631-95378650 None:intergenic 25.0%
!! TTTTGCAACTGAAAATTGAA+AGG + Chr1:95378977-95378996 None:intergenic 25.0%
!!! CTTAACTACTGTTGTTTTAT+AGG - Chr1:95378292-95378311 MsG0180005729.01.T01:CDS 25.0%
!!! TTGTTTTATTAGCCAAAGAT+TGG - Chr1:95378811-95378830 MsG0180005729.01.T01:intron 25.0%
AAATTATGTCAGAAGTTGTG+TGG + Chr1:95377207-95377226 None:intergenic 30.0%
AAGCATATAACTAGCTACAA+AGG + Chr1:95380349-95380368 None:intergenic 30.0%
AATAACACACAGAATGATTG+CGG + Chr1:95379133-95379152 None:intergenic 30.0%
AATAGAATGTTCATGCTTAG+TGG - Chr1:95380173-95380192 MsG0180005729.01.T01:intron 30.0%
AATCAAAGATACACACCTAA+CGG + Chr1:95378409-95378428 None:intergenic 30.0%
AATCTTCTGATTATCCTGAT+TGG - Chr1:95378879-95378898 MsG0180005729.01.T01:intron 30.0%
AATGACATAAAACACATCCT+TGG + Chr1:95379651-95379670 None:intergenic 30.0%
AATTTCTTAAAGAACAAGGC+TGG - Chr1:95377491-95377510 MsG0180005729.01.T01:three_prime_UTR 30.0%
ACAGACAATAATTCGTTCTT+TGG + Chr1:95377369-95377388 None:intergenic 30.0%
ACTATCACAATAATATGGCA+TGG - Chr1:95377462-95377481 MsG0180005729.01.T01:three_prime_UTR 30.0%
ACTTCATAAGGAATAGTAGA+TGG + Chr1:95378364-95378383 None:intergenic 30.0%
ACTTGTTTGAATACTTGGTT+TGG + Chr1:95377286-95377305 None:intergenic 30.0%
AGATATAATGAAAGCTGCAT+CGG - Chr1:95377589-95377608 MsG0180005729.01.T01:three_prime_UTR 30.0%
AGCATGAACATTCTATTCAT+TGG + Chr1:95380170-95380189 None:intergenic 30.0%
ATATCCGAATGATACAAACA+AGG + Chr1:95378779-95378798 None:intergenic 30.0%
ATCTATTCATGGAACTATTC+AGG + Chr1:95377731-95377750 None:intergenic 30.0%
ATCTTCTGATTATCCTGATT+GGG - Chr1:95378880-95378899 MsG0180005729.01.T01:intron 30.0%
CAGACAATAATTCGTTCTTT+GGG + Chr1:95377368-95377387 None:intergenic 30.0%
CCATCAAAATACAAACTTCA+TGG + Chr1:95377859-95377878 None:intergenic 30.0%
CTTGTTTGAATACTTGGTTT+GGG + Chr1:95377285-95377304 None:intergenic 30.0%
GCTATGAATATTTGGAAGAA+AGG + Chr1:95377782-95377801 None:intergenic 30.0%
GTACAATCCTAAAACTTTCA+GGG + Chr1:95378097-95378116 None:intergenic 30.0%
GTAGATATGATTCGTGAATA+TGG - Chr1:95379623-95379642 MsG0180005729.01.T01:CDS 30.0%
TACAAACTTCATGGAGAATT+TGG + Chr1:95377850-95377869 None:intergenic 30.0%
TACAATCCTAAAACTTTCAG+GGG + Chr1:95378096-95378115 None:intergenic 30.0%
TAGCGACTATCACAATAATA+TGG - Chr1:95377457-95377476 MsG0180005729.01.T01:three_prime_UTR 30.0%
TATAACTTATCTGCATTCCA+TGG - Chr1:95379695-95379714 MsG0180005729.01.T01:intron 30.0%
TATTGTTGGGGAATACATAA+AGG - Chr1:95379226-95379245 MsG0180005729.01.T01:intron 30.0%
TCTCTAGACTAGAATATATC+TGG - Chr1:95378451-95378470 MsG0180005729.01.T01:CDS 30.0%
TGAAATGTTTCATCTTATGG+TGG + Chr1:95379417-95379436 None:intergenic 30.0%
TGCAATGTCCCAAATAAAAA+AGG + Chr1:95379183-95379202 None:intergenic 30.0%
TGTAAATGTTGAATTGCATC+AGG + Chr1:95377962-95377981 None:intergenic 30.0%
TGTACAATCCTAAAACTTTC+AGG + Chr1:95378098-95378117 None:intergenic 30.0%
! ACGAATTATTGTCTGTCTTT+TGG - Chr1:95377373-95377392 MsG0180005729.01.T01:three_prime_UTR 30.0%
! AGAACCTTGTTTGTATCATT+CGG - Chr1:95378772-95378791 MsG0180005729.01.T01:intron 30.0%
! ATATTTGAAACAACCCAATC+AGG + Chr1:95378896-95378915 None:intergenic 30.0%
! TTGTTTGAATACTTGGTTTG+GGG + Chr1:95377284-95377303 None:intergenic 30.0%
!! AGGTACTTTTTGGTAGAAAT+TGG + Chr1:95380329-95380348 None:intergenic 30.0%
!! CCATGAAGTTTGTATTTTGA+TGG - Chr1:95377856-95377875 MsG0180005729.01.T01:CDS 30.0%
!! GGTACTTTTTGGTAGAAATT+GGG + Chr1:95380328-95380347 None:intergenic 30.0%
!! TTCCCCTTTTTCATTAATGA+AGG - Chr1:95377895-95377914 MsG0180005729.01.T01:CDS 30.0%
!!! GAATTTTTTTGGAATCTCAC+CGG + Chr1:95379381-95379400 None:intergenic 30.0%
!!! TATTTTAGCAGCATTATCCT+TGG + Chr1:95380261-95380280 None:intergenic 30.0%
!!! TTTTTTATTTGGGACATTGC+AGG - Chr1:95379182-95379201 MsG0180005729.01.T01:CDS 30.0%
AAAAGAGCTTCGTCATAGAT+TGG - Chr1:95379496-95379515 MsG0180005729.01.T01:intron 35.0%
AAATGTTGAATTGCATCAGG+AGG + Chr1:95377959-95377978 None:intergenic 35.0%
AATGTTTCATCTTATGGTGG+TGG + Chr1:95379414-95379433 None:intergenic 35.0%
ACCAAGTATTCAAACAAGTG+AGG - Chr1:95377287-95377306 MsG0180005729.01.T01:three_prime_UTR 35.0%
AGGATCAAGAACGAATACAT+CGG + Chr1:95377939-95377958 None:intergenic 35.0%
CACATGAAACTCTTGGAAAA+CGG + Chr1:95379316-95379335 None:intergenic 35.0%
CTAAACTTATCTGAGTGCAA+TGG - Chr1:95378016-95378035 MsG0180005729.01.T01:intron 35.0%
CTACAAGAGTTTGTCAATCA+TGG - Chr1:95379087-95379106 MsG0180005729.01.T01:intron 35.0%
GCAGATAAGTTATACTTACC+AGG + Chr1:95379689-95379708 None:intergenic 35.0%
GTATTAGTAAATCATCGCCT+AGG + Chr1:95379563-95379582 None:intergenic 35.0%
TATTCATGGAACTATTCAGG+AGG + Chr1:95377728-95377747 None:intergenic 35.0%
TCCTCACTTGTTTGAATACT+TGG + Chr1:95377291-95377310 None:intergenic 35.0%
TCTGATCATGATTCATGATG+AGG + Chr1:95377246-95377265 None:intergenic 35.0%
TCTTACACTTGTTCTGCTTT+AGG + Chr1:95379837-95379856 None:intergenic 35.0%
TGCAACCATATTTCTTTCCT+AGG - Chr1:95379543-95379562 MsG0180005729.01.T01:CDS 35.0%
TTCGGTGAGCTATGAATATT+TGG + Chr1:95377790-95377809 None:intergenic 35.0%
TTGTAATAACTAGCTGACGA+GGG + Chr1:95378330-95378349 None:intergenic 35.0%
TTGTCAAATAGCAGCTATAG+CGG - Chr1:95378644-95378663 MsG0180005729.01.T01:intron 35.0%
TTTGTAATAACTAGCTGACG+AGG + Chr1:95378331-95378350 None:intergenic 35.0%
TTTGTACAAATGGCATATCG+TGG + Chr1:95378621-95378640 None:intergenic 35.0%
! ATTTTTCCATACCCTGCATT+CGG + Chr1:95379775-95379794 None:intergenic 35.0%
!! ATAATTTGGTTAGGCATTGG+TGG - Chr1:95377333-95377352 MsG0180005729.01.T01:three_prime_UTR 35.0%
!! CAAGTGAGGATTTACTTTTG+TGG - Chr1:95377301-95377320 MsG0180005729.01.T01:three_prime_UTR 35.0%
!! CAAGTTGATTATGTATCGCA+TGG - Chr1:95378245-95378264 MsG0180005729.01.T01:CDS 35.0%
!! TGTTTGAATACTTGGTTTGG+GGG + Chr1:95377283-95377302 None:intergenic 35.0%
!!! AGTTGACTTGTGCATTTTCA+TGG - Chr1:95378848-95378867 MsG0180005729.01.T01:intron 35.0%
!!! CTACTGTTGTTTTATAGGCA+AGG - Chr1:95378297-95378316 MsG0180005729.01.T01:CDS 35.0%
!!! CTAGCTACAAAGGTACTTTT+TGG + Chr1:95380339-95380358 None:intergenic 35.0%
!!! TGTATTTTGATGGAGCTGAT+TGG - Chr1:95377866-95377885 MsG0180005729.01.T01:CDS 35.0%
!!! TGTTGTTTTATAGGCAAGGT+TGG - Chr1:95378301-95378320 MsG0180005729.01.T01:CDS 35.0%
ACAAACTCTTGTAGAACCAG+TGG + Chr1:95379081-95379100 None:intergenic 40.0%
AGCTCGCGTTTACTGATATT+AGG + Chr1:95379272-95379291 None:intergenic 40.0%
AGTTGCAAAACCTCTAGTTG+TGG - Chr1:95378987-95379006 MsG0180005729.01.T01:intron 40.0%
ATAATGAAAGCTGCATCGGA+GGG - Chr1:95377593-95377612 MsG0180005729.01.T01:three_prime_UTR 40.0%
CATCGCCTAGGAAAGAAATA+TGG + Chr1:95379551-95379570 None:intergenic 40.0%
CATTAAGTACACGAGGAATC+TGG - Chr1:95377648-95377667 MsG0180005729.01.T01:three_prime_UTR 40.0%
CGTACATCTTGCTCTTGTAT+TGG - Chr1:95378156-95378175 MsG0180005729.01.T01:intron 40.0%
CTAAAACTTTCAGGGGAGAT+TGG + Chr1:95378089-95378108 None:intergenic 40.0%
CTAAAGCAAGAGAAGTTGGA+AGG - Chr1:95379870-95379889 MsG0180005729.01.T01:intron 40.0%
CTTATGAAGTCACCAAAGCT+GGG - Chr1:95378374-95378393 MsG0180005729.01.T01:intron 40.0%
CTTCCAACTTCTCTTGCTTT+AGG + Chr1:95379872-95379891 None:intergenic 40.0%
GAATTGCAATGCCGTCTATA+GGG - Chr1:95379584-95379603 MsG0180005729.01.T01:CDS 40.0%
GATCTTGATCCTAGTATTGC+CGG - Chr1:95379359-95379378 MsG0180005729.01.T01:intron 40.0%
GGATCAAGAACGAATACATC+GGG + Chr1:95377938-95377957 None:intergenic 40.0%
GGGAATACATAAAGGTTGTG+AGG - Chr1:95379234-95379253 MsG0180005729.01.T01:intron 40.0%
TATAATGAAAGCTGCATCGG+AGG - Chr1:95377592-95377611 MsG0180005729.01.T01:three_prime_UTR 40.0%
TGAATTGCAATGCCGTCTAT+AGG - Chr1:95379583-95379602 MsG0180005729.01.T01:CDS 40.0%
TTGATTTCTGTCAGAGACCA+TGG + Chr1:95379715-95379734 None:intergenic 40.0%
TTTGGGAGTTGAGTATGACA+TGG - Chr1:95377147-95377166 MsG0180005729.01.T01:three_prime_UTR 40.0%
! CAATCTCCCCTGAAAGTTTT+AGG - Chr1:95378087-95378106 MsG0180005729.01.T01:intron 40.0%
! TTACGGTTTTTCCGAATGCA+GGG - Chr1:95379761-95379780 MsG0180005729.01.T01:intron 40.0%
! TTTACGGTTTTTCCGAATGC+AGG - Chr1:95379760-95379779 MsG0180005729.01.T01:intron 40.0%
! TTTATTTGGGACATTGCAGG+TGG - Chr1:95379185-95379204 MsG0180005729.01.T01:CDS 40.0%
!! TAGCAGCTATAGCGGATTAA+CGG - Chr1:95378652-95378671 MsG0180005729.01.T01:intron 40.0%
!! TTTCATCTTATGGTGGTGGT+GGG + Chr1:95379410-95379429 None:intergenic 40.0%
!!! GTGGGAAAGGGGAATTTTTT+TGG + Chr1:95379392-95379411 None:intergenic 40.0%
AACCAATCAATGCCGCAGAA+AGG + Chr1:95378520-95378539 None:intergenic 45.0%
AACTCTTGTAGAACCAGTGG+AGG + Chr1:95379078-95379097 None:intergenic 45.0%
ACAAGCGAAGTCCCTATAGA+CGG + Chr1:95379598-95379617 None:intergenic 45.0%
ATACCAAATGCAACCGTGTC+TGG - Chr1:95377553-95377572 MsG0180005729.01.T01:three_prime_UTR 45.0%
ATCCACCACATCTTGAAGCA+TGG + Chr1:95377996-95378015 None:intergenic 45.0%
ATCCAGAAGATGTGGTTGTC+CGG + Chr1:95377183-95377202 None:intergenic 45.0%
ATCCATGCTTCAAGATGTGG+TGG - Chr1:95377991-95378010 MsG0180005729.01.T01:intron 45.0%
CCAATCCATGCTTCAAGATG+TGG - Chr1:95377988-95378007 MsG0180005729.01.T01:intron 45.0%
CCACATCTTGAAGCATGGAT+TGG + Chr1:95377991-95378010 None:intergenic 45.0%
CCTTATGAAGTCACCAAAGC+TGG - Chr1:95378373-95378392 MsG0180005729.01.T01:intron 45.0%
CTGCCTAAAGCAAGAGAAGT+TGG - Chr1:95379866-95379885 MsG0180005729.01.T01:intron 45.0%
GAGTATGACATGGAGGTGAT+TGG - Chr1:95377157-95377176 MsG0180005729.01.T01:three_prime_UTR 45.0%
GATGACTAACTTCTGACAGC+TGG - Chr1:95377615-95377634 MsG0180005729.01.T01:three_prime_UTR 45.0%
GATTCGTGAATATGGGACCA+AGG - Chr1:95379631-95379650 MsG0180005729.01.T01:CDS 45.0%
GCAAAACCTCTAGTTGTGGA+TGG - Chr1:95378991-95379010 MsG0180005729.01.T01:intron 45.0%
GTGTTGTCAATAGCAGGTCA+CGG + Chr1:95378724-95378743 None:intergenic 45.0%
TAAACTGGCACGAAATGCCA+AGG - Chr1:95380241-95380260 MsG0180005729.01.T01:CDS 45.0%
TAACCAGACACGGTTGCATT+TGG + Chr1:95377559-95377578 None:intergenic 45.0%
TAGCTATTGGCACCTTTCTG+CGG - Chr1:95378505-95378524 MsG0180005729.01.T01:CDS 45.0%
TCTCCAACAAAGGTCTTGGT+GGG + Chr1:95379469-95379488 None:intergenic 45.0%
TGACCTGCTATTGACAACAC+TGG - Chr1:95378724-95378743 MsG0180005729.01.T01:intron 45.0%
TGGTAGAAATTGGGACAGAG+TGG + Chr1:95380319-95380338 None:intergenic 45.0%
TGTGTGGTATCCAGAAGATG+TGG + Chr1:95377191-95377210 None:intergenic 45.0%
TTTGCAAGCCTCTCCAACAA+AGG + Chr1:95379479-95379498 None:intergenic 45.0%
! CCAGCTTTGGTGACTTCATA+AGG + Chr1:95378376-95378395 None:intergenic 45.0%
! GTTTTTCCGAATGCAGGGTA+TGG - Chr1:95379766-95379785 MsG0180005729.01.T01:intron 45.0%
!! CATCTTGAAGCATGGATTGG+CGG + Chr1:95377988-95378007 None:intergenic 45.0%
!! GTTTCATCTTATGGTGGTGG+TGG + Chr1:95379411-95379430 None:intergenic 45.0%
ACACCCACCAAGACCTTTGT+TGG - Chr1:95379463-95379482 MsG0180005729.01.T01:intron 50.0%
AGCCTCTCCAACAAAGGTCT+TGG + Chr1:95379473-95379492 None:intergenic 50.0%
ATGACATGGAGGTGATTGGC+CGG - Chr1:95377161-95377180 MsG0180005729.01.T01:three_prime_UTR 50.0%
CACCAAGACCTTTGTTGGAG+AGG - Chr1:95379468-95379487 MsG0180005729.01.T01:intron 50.0%
CTCTCCAACAAAGGTCTTGG+TGG + Chr1:95379470-95379489 None:intergenic 50.0%
GAGCCAGTGTTGTCAATAGC+AGG + Chr1:95378730-95378749 None:intergenic 50.0%
GCTGCTGCACATGAAACTCT+TGG + Chr1:95379323-95379342 None:intergenic 50.0%
GCTGGCTGAGCTTATAGGTT+AGG - Chr1:95377509-95377528 MsG0180005729.01.T01:three_prime_UTR 50.0%
GGAATCTCACCGGCAATACT+AGG + Chr1:95379371-95379390 None:intergenic 50.0%
GGGAGTTGAGTATGACATGG+AGG - Chr1:95377150-95377169 MsG0180005729.01.T01:three_prime_UTR 50.0%
GTAAAGACGTGCTCGTAGTC+TGG + Chr1:95379799-95379818 None:intergenic 50.0%
TTCAGAGCTTGAACCTCCAC+TGG - Chr1:95379062-95379081 MsG0180005729.01.T01:intron 50.0%
! ACAAGGCTGGCTGAGCTTAT+AGG - Chr1:95377504-95377523 MsG0180005729.01.T01:three_prime_UTR 50.0%
!! AGCGGATTAACGGCGCTATA+GGG - Chr1:95378662-95378681 MsG0180005729.01.T01:intron 50.0%
!! CACCTTTCTGCGGCATTGAT+TGG - Chr1:95378515-95378534 MsG0180005729.01.T01:CDS 50.0%
!! CTTATGGTGGTGGTGGGAAA+GGG + Chr1:95379404-95379423 None:intergenic 50.0%
!! TAGCGGATTAACGGCGCTAT+AGG - Chr1:95378661-95378680 MsG0180005729.01.T01:intron 50.0%
!! TCTTATGGTGGTGGTGGGAA+AGG + Chr1:95379405-95379424 None:intergenic 50.0%
!! TTATGGTGGTGGTGGGAAAG+GGG + Chr1:95379403-95379422 None:intergenic 50.0%
ATAGCAGCGCTACAGCACAG+TGG - Chr1:95378572-95378591 MsG0180005729.01.T01:intron 55.0%
CGCGAGCTATCAAAAGTCGC+AGG - Chr1:95379284-95379303 MsG0180005729.01.T01:intron 55.0%
CGGCAACTTCAACCCAGCTT+TGG + Chr1:95378389-95378408 None:intergenic 55.0%
GCACTGCCATCCACAACTAG+AGG + Chr1:95379000-95379019 None:intergenic 55.0%
! GCTGGGTTGAAGTTGCCGTT+AGG - Chr1:95378391-95378410 MsG0180005729.01.T01:intron 55.0%
GGCCGGACAACCACATCTTC+TGG - Chr1:95377178-95377197 MsG0180005729.01.T01:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 95377115 95380427 95377115 ID=MsG0180005729.01;Name=MsG0180005729.01
Chr1 mRNA 95377115 95380427 95377115 ID=MsG0180005729.01.T01;Parent=MsG0180005729.01;Name=MsG0180005729.01.T01;_AED=0.44;_eAED=0.46;_QI=0|0.85|0.75|1|0.85|0.75|8|554|341
Chr1 exon 95377115 95377760 95377115 ID=MsG0180005729.01.T01:exon:10457;Parent=MsG0180005729.01.T01
Chr1 exon 95377853 95377937 95377853 ID=MsG0180005729.01.T01:exon:10456;Parent=MsG0180005729.01.T01
Chr1 exon 95378025 95378080 95378025 ID=MsG0180005729.01.T01:exon:10455;Parent=MsG0180005729.01.T01
Chr1 exon 95378162 95378338 95378162 ID=MsG0180005729.01.T01:exon:10454;Parent=MsG0180005729.01.T01
Chr1 exon 95378434 95378553 95378434 ID=MsG0180005729.01.T01:exon:10453;Parent=MsG0180005729.01.T01
Chr1 exon 95379130 95379228 95379130 ID=MsG0180005729.01.T01:exon:10452;Parent=MsG0180005729.01.T01
Chr1 exon 95379505 95379712 95379505 ID=MsG0180005729.01.T01:exon:10451;Parent=MsG0180005729.01.T01
Chr1 exon 95380239 95380427 95380239 ID=MsG0180005729.01.T01:exon:10450;Parent=MsG0180005729.01.T01
Chr1 CDS 95380239 95380427 95380239 ID=MsG0180005729.01.T01:cds;Parent=MsG0180005729.01.T01
Chr1 CDS 95379505 95379712 95379505 ID=MsG0180005729.01.T01:cds;Parent=MsG0180005729.01.T01
Chr1 CDS 95379130 95379228 95379130 ID=MsG0180005729.01.T01:cds;Parent=MsG0180005729.01.T01
Chr1 CDS 95378434 95378553 95378434 ID=MsG0180005729.01.T01:cds;Parent=MsG0180005729.01.T01
Chr1 CDS 95378162 95378338 95378162 ID=MsG0180005729.01.T01:cds;Parent=MsG0180005729.01.T01
Chr1 CDS 95378025 95378080 95378025 ID=MsG0180005729.01.T01:cds;Parent=MsG0180005729.01.T01
Chr1 CDS 95377853 95377937 95377853 ID=MsG0180005729.01.T01:cds;Parent=MsG0180005729.01.T01
Chr1 CDS 95377669 95377760 95377669 ID=MsG0180005729.01.T01:cds;Parent=MsG0180005729.01.T01
Chr1 three_prime_UTR 95377115 95377668 95377115 ID=MsG0180005729.01.T01:three_prime_utr;Parent=MsG0180005729.01.T01
Gene Sequence

>MsG0180005729.01.T01

ATGGTATTGTATGAAATCGTTAGTATTATTAGTTTGGGAGTTGAGTATGACATGGAGGTGATTGGCCGGACAACCACATCTTCTGGATACCACACAACTTCTGACATAATTTGCAGAGTTCTTGCTCTCCTCATCATGAATCATGATCAGATAGTTGAAATCAGTCCCCCAAACCAAGTATTCAAACAAGGATTGCTTCATGCTTTCCAAATTCTCCATGAAGTTTGTATTTTGATGGAGCTGATTGGACTTCTTTCCCCTTTTTCATTAATGAAGGATTTCAGGCAAAAACATCCCGATGTATTCGTTCTTGATCCTCCTGATGCAATTCAACATTTACACAACCGCCAATCCATGCTTCAAGATGTGGTGGATCTAAACTTATCTGAGTGCAATGGCAAGGTTGGCATCCCTCGTCAGCTAGTTATTACAAAAGACAAAGATCCATCTACTATTCCTTATGAAGTCACCAAAGCTGGGTTGAAGTTGCCGTTAGTTGCAAAACCTCTAGTTGTGGATGGCAGTGCAAAGTCGCATGAACTATTTCTTGCTTATGACGAGTTCTCTCTTTCAGAGCTTGAACCTCCACTGGTTCTACAAGAGTTTGTCAATCATGGTGGTCTTCTCTTTAAGATTTATATTGTTGGGGAATACATAAAGGTTGTGAGGCGTTTCTCTCTTCCTAATATCAGTAAACGCGAGCTATCAAAAGTCGCAGGTGTATACCGTTTTCCAAGAGTTTCATGTGCAGCAGCTTCTGCAGATGAAGCTGATCTTGATCCTAGTATTGCCGAACACCCACCAAGACCTTTGTTGGAGAGGCTTGCAAAAGAGCTTCGTCATAGATTGGGACTTCGCTTGTTCAACGTAGATATGATTCGTGAATATGGGACCAAGGATGTGTTTTATGTCATTGATATCAATTACTTTCCTGGGTATGGAAAAATGCCAGACTACGAGCACGTCTTTACAGATTTTCTACTTAACCTAAAGCAGAACAAGTGTAAGAAGAAACTTACTGCCTAA

Protein sequence

>MsG0180005729.01.T01

MVLYEIVSIISLGVEYDMEVIGRTTTSSGYHTTSDIICRVLALLIMNHDQIVEISPPNQVFKQGLLHAFQILHEVCILMELIGLLSPFSLMKDFRQKHPDVFVLDPPDAIQHLHNRQSMLQDVVDLNLSECNGKVGIPRQLVITKDKDPSTIPYEVTKAGLKLPLVAKPLVVDGSAKSHELFLAYDEFSLSELEPPLVLQEFVNHGGLLFKIYIVGEYIKVVRRFSLPNISKRELSKVAGVYRFPRVSCAAASADEADLDPSIAEHPPRPLLERLAKELRHRLGLRLFNVDMIREYGTKDVFYVIDINYFPGYGKMPDYEHVFTDFLLNLKQNKCKKKLTA*