Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046043.01.T01 | AES90821.1 | 64.017 | 239 | 12 | 2 | 1 | 165 | 158 | 396 | 4.01E-88 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046043.01.T01 | Q8S7M7 | 65.753 | 146 | 45 | 1 | 25 | 165 | 295 | 440 | 3.62E-57 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046043.01.T01 | G7JGG8 | 64.017 | 239 | 12 | 2 | 1 | 165 | 158 | 396 | 1.91e-88 | 277 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180004464.01 | MsG0880046043.01 | 0.810227 | 1.279934e-50 | 7.672223e-48 |
| MsG0180005172.01 | MsG0880046043.01 | 0.803908 | 2.784144e-49 | 1.416194e-46 |
| MsG0780040442.01 | MsG0880046043.01 | 0.801468 | 8.878894e-49 | 4.243372e-46 |
| MsG0880043442.01 | MsG0880046043.01 | 0.815239 | 1.023591e-51 | 7.018314e-49 |
| MsG0380014573.01 | MsG0880046043.01 | 0.807585 | 4.703222e-50 | 2.629517e-47 |
| MsG0480018998.01 | MsG0880046043.01 | 0.813641 | 2.309587e-51 | 1.516592e-48 |
| MsG0480019329.01 | MsG0880046043.01 | 0.820669 | 6.069460e-53 | 4.832981e-50 |
| MsG0380017092.01 | MsG0880046043.01 | 0.818794 | 1.627520e-52 | 1.230272e-49 |
| MsG0580027773.01 | MsG0880046043.01 | 0.810172 | 1.315223e-50 | 7.872796e-48 |
| MsG0280008073.01 | MsG0880046043.01 | 0.819274 | 1.265450e-52 | 9.693438e-50 |
| MsG0280008116.01 | MsG0880046043.01 | 0.804203 | 2.417672e-49 | 1.239012e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046043.01.T01 | MTR_4g098530 | 64.017 | 239 | 12 | 2 | 1 | 165 | 158 | 396 | 4.85e-92 | 277 |
| MsG0880046043.01.T01 | MTR_4g098530 | 32.215 | 149 | 71 | 2 | 25 | 143 | 297 | 445 | 1.04e-11 | 62.8 |
| MsG0880046043.01.T01 | MTR_5g024780 | 41.597 | 238 | 65 | 2 | 1 | 164 | 239 | 476 | 3.64e-50 | 170 |
| MsG0880046043.01.T01 | MTR_5g024780 | 29.570 | 186 | 118 | 5 | 2 | 179 | 383 | 563 | 1.61e-14 | 70.9 |
| MsG0880046043.01.T01 | MTR_8g072950 | 53.425 | 146 | 63 | 1 | 25 | 165 | 321 | 466 | 1.24e-45 | 158 |
| MsG0880046043.01.T01 | MTR_8g072950 | 39.623 | 159 | 91 | 1 | 1 | 154 | 228 | 386 | 3.33e-23 | 95.9 |
| MsG0880046043.01.T01 | MTR_5g032910 | 42.336 | 137 | 71 | 2 | 31 | 159 | 234 | 370 | 8.55e-24 | 97.1 |
| MsG0880046043.01.T01 | MTR_5g032910 | 38.889 | 144 | 82 | 2 | 26 | 163 | 183 | 326 | 9.61e-19 | 83.2 |
| MsG0880046043.01.T01 | MTR_4g105010 | 36.628 | 172 | 98 | 3 | 17 | 180 | 276 | 444 | 1.13e-21 | 91.7 |
| MsG0880046043.01.T01 | MTR_4g105010 | 35.849 | 159 | 96 | 2 | 25 | 177 | 235 | 393 | 1.11e-19 | 85.9 |
| MsG0880046043.01.T01 | MTR_4g105010 | 38.889 | 144 | 80 | 3 | 40 | 177 | 204 | 345 | 7.98e-18 | 80.5 |
| MsG0880046043.01.T01 | MTR_3g076990 | 41.429 | 140 | 76 | 2 | 31 | 164 | 238 | 377 | 6.33e-20 | 86.7 |
| MsG0880046043.01.T01 | MTR_3g076990 | 40.876 | 137 | 73 | 2 | 31 | 159 | 284 | 420 | 3.65e-19 | 84.3 |
| MsG0880046043.01.T01 | MTR_3g076990 | 35.593 | 118 | 70 | 2 | 43 | 154 | 204 | 321 | 3.68e-12 | 64.3 |
| MsG0880046043.01.T01 | MTR_3g076990 | 36.000 | 125 | 72 | 3 | 26 | 142 | 302 | 426 | 3.76e-12 | 63.9 |
| MsG0880046043.01.T01 | MTR_3g023830 | 36.000 | 125 | 75 | 1 | 41 | 160 | 46 | 170 | 2.04e-17 | 77.8 |
| MsG0880046043.01.T01 | MTR_3g023830 | 36.585 | 123 | 73 | 1 | 28 | 145 | 79 | 201 | 1.16e-16 | 75.5 |
| MsG0880046043.01.T01 | MTR_3g023830 | 34.328 | 134 | 83 | 1 | 31 | 159 | 59 | 192 | 1.76e-14 | 69.7 |
| MsG0880046043.01.T01 | MTR_4g127120 | 34.694 | 147 | 89 | 3 | 26 | 165 | 59 | 205 | 1.20e-15 | 73.6 |
| MsG0880046043.01.T01 | MTR_4g127120 | 32.121 | 165 | 81 | 2 | 26 | 159 | 83 | 247 | 1.09e-11 | 62.4 |
| MsG0880046043.01.T01 | MTR_5g069580 | 36.184 | 152 | 85 | 7 | 18 | 159 | 114 | 263 | 2.42e-14 | 70.5 |
| MsG0880046043.01.T01 | MTR_5g069580 | 39.316 | 117 | 62 | 5 | 31 | 138 | 197 | 313 | 2.93e-13 | 67.4 |
| MsG0880046043.01.T01 | MTR_2g038380 | 35.294 | 136 | 82 | 2 | 36 | 165 | 86 | 221 | 3.03e-14 | 69.7 |
| MsG0880046043.01.T01 | MTR_6g037750 | 37.143 | 140 | 77 | 7 | 35 | 163 | 135 | 274 | 3.04e-13 | 67.4 |
| MsG0880046043.01.T01 | MTR_8g047220 | 38.129 | 139 | 76 | 6 | 31 | 159 | 201 | 339 | 3.13e-13 | 67.4 |
| MsG0880046043.01.T01 | MTR_5g043800 | 33.533 | 167 | 94 | 8 | 10 | 160 | 69 | 234 | 7.10e-13 | 65.9 |
| MsG0880046043.01.T01 | MTR_3g465570 | 32.847 | 137 | 84 | 2 | 31 | 159 | 192 | 328 | 2.83e-12 | 64.3 |
| MsG0880046043.01.T01 | MTR_3g465570 | 31.056 | 161 | 98 | 4 | 24 | 179 | 213 | 365 | 4.43e-11 | 60.8 |
| MsG0880046043.01.T01 | MTR_8g047230 | 35.252 | 139 | 80 | 6 | 31 | 159 | 200 | 338 | 1.02e-11 | 63.2 |
| MsG0880046043.01.T01 | MTR_8g047230 | 34.532 | 139 | 81 | 6 | 31 | 159 | 176 | 314 | 5.50e-11 | 60.8 |
| MsG0880046043.01.T01 | MTR_0491s0020 | 35.252 | 139 | 80 | 6 | 31 | 159 | 177 | 315 | 1.82e-11 | 62.0 |
| MsG0880046043.01.T01 | MTR_8g062130 | 35.556 | 135 | 80 | 3 | 31 | 158 | 874 | 1008 | 2.04e-11 | 62.0 |
| MsG0880046043.01.T01 | MTR_5g082370 | 34.043 | 141 | 82 | 7 | 31 | 160 | 401 | 541 | 3.07e-11 | 61.6 |
| MsG0880046043.01.T01 | MTR_1g039220 | 33.813 | 139 | 82 | 6 | 31 | 159 | 310 | 448 | 5.08e-11 | 60.8 |
| MsG0880046043.01.T01 | MTR_4g130920 | 32.298 | 161 | 98 | 7 | 10 | 159 | 61 | 221 | 8.50e-11 | 60.5 |
| MsG0880046043.01.T01 | MTR_2g016530 | 31.159 | 138 | 75 | 4 | 26 | 160 | 142 | 262 | 9.50e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046043.01.T01 | AT4G35470 | 40.084 | 237 | 68 | 3 | 1 | 163 | 208 | 444 | 4.95e-47 | 161 |
| MsG0880046043.01.T01 | AT4G35470 | 31.429 | 140 | 84 | 4 | 16 | 146 | 362 | 498 | 4.01e-12 | 63.9 |
| MsG0880046043.01.T01 | AT4G35470 | 40.084 | 237 | 68 | 3 | 1 | 163 | 208 | 444 | 5.31e-47 | 161 |
| MsG0880046043.01.T01 | AT4G35470 | 31.169 | 154 | 85 | 5 | 16 | 151 | 362 | 512 | 4.00e-12 | 63.9 |
| MsG0880046043.01.T01 | AT2G17440 | 53.793 | 145 | 62 | 1 | 26 | 165 | 286 | 430 | 1.54e-46 | 159 |
| MsG0880046043.01.T01 | AT2G17440 | 32.164 | 171 | 102 | 5 | 19 | 180 | 349 | 514 | 4.47e-14 | 69.7 |
| MsG0880046043.01.T01 | AT3G11330 | 43.448 | 145 | 76 | 2 | 26 | 164 | 231 | 375 | 3.30e-28 | 109 |
| MsG0880046043.01.T01 | AT3G11330 | 40.000 | 120 | 66 | 2 | 41 | 154 | 200 | 319 | 8.20e-14 | 68.9 |
| MsG0880046043.01.T01 | AT5G05850 | 41.379 | 145 | 79 | 2 | 26 | 164 | 237 | 381 | 5.80e-25 | 100 |
| MsG0880046043.01.T01 | AT5G05850 | 37.226 | 137 | 78 | 2 | 31 | 159 | 288 | 424 | 4.03e-17 | 78.6 |
| MsG0880046043.01.T01 | AT5G05850 | 36.441 | 118 | 69 | 2 | 43 | 154 | 208 | 325 | 1.71e-11 | 62.4 |
| MsG0880046043.01.T01 | AT3G26500 | 34.177 | 158 | 98 | 2 | 26 | 177 | 193 | 350 | 3.85e-21 | 89.7 |
| MsG0880046043.01.T01 | AT3G26500 | 36.496 | 137 | 79 | 2 | 31 | 159 | 244 | 380 | 2.92e-20 | 87.4 |
| MsG0880046043.01.T01 | AT3G26500 | 33.607 | 122 | 75 | 2 | 41 | 156 | 162 | 283 | 2.38e-11 | 61.6 |
| MsG0880046043.01.T01 | AT1G12970 | 35.443 | 158 | 96 | 2 | 26 | 177 | 194 | 351 | 3.22e-19 | 84.3 |
| MsG0880046043.01.T01 | AT1G12970 | 35.915 | 142 | 83 | 2 | 26 | 159 | 240 | 381 | 1.39e-18 | 82.8 |
| MsG0880046043.01.T01 | AT1G12970 | 38.400 | 125 | 71 | 2 | 41 | 159 | 163 | 287 | 2.18e-13 | 67.8 |
| MsG0880046043.01.T01 | AT4G26050 | 37.778 | 135 | 78 | 2 | 35 | 163 | 100 | 234 | 2.48e-18 | 81.6 |
| MsG0880046043.01.T01 | AT4G26050 | 35.211 | 142 | 84 | 3 | 26 | 159 | 114 | 255 | 2.52e-13 | 67.4 |
| MsG0880046043.01.T01 | AT4G29880 | 38.776 | 147 | 83 | 3 | 26 | 165 | 86 | 232 | 8.35e-17 | 77.0 |
| MsG0880046043.01.T01 | AT4G29880 | 32.886 | 149 | 82 | 2 | 12 | 159 | 49 | 180 | 4.18e-11 | 60.8 |
| MsG0880046043.01.T01 | AT2G19330 | 32.903 | 155 | 97 | 3 | 26 | 173 | 93 | 247 | 1.81e-15 | 73.6 |
| MsG0880046043.01.T01 | AT2G19330 | 32.121 | 165 | 81 | 2 | 26 | 159 | 117 | 281 | 2.29e-13 | 67.4 |
| MsG0880046043.01.T01 | AT3G15410 | 33.858 | 127 | 69 | 1 | 62 | 173 | 73 | 199 | 1.90e-13 | 67.8 |
| MsG0880046043.01.T01 | AT3G15410 | 31.288 | 163 | 83 | 3 | 26 | 159 | 78 | 240 | 5.13e-13 | 66.6 |
| MsG0880046043.01.T01 | AT3G15410 | 33.858 | 127 | 69 | 1 | 62 | 173 | 79 | 205 | 2.13e-13 | 67.8 |
| MsG0880046043.01.T01 | AT3G15410 | 31.288 | 163 | 83 | 3 | 26 | 159 | 84 | 246 | 5.55e-13 | 66.6 |
| MsG0880046043.01.T01 | AT2G30105 | 41.228 | 114 | 64 | 1 | 46 | 156 | 188 | 301 | 6.11e-13 | 66.2 |
| MsG0880046043.01.T01 | AT5G61240 | 34.286 | 140 | 81 | 6 | 10 | 138 | 66 | 205 | 7.33e-12 | 63.2 |
| MsG0880046043.01.T01 | AT5G07910 | 28.571 | 147 | 77 | 2 | 41 | 159 | 47 | 193 | 1.05e-11 | 62.0 |
| MsG0880046043.01.T01 | AT5G07910 | 34.058 | 138 | 85 | 2 | 28 | 159 | 80 | 217 | 8.42e-11 | 59.7 |
| MsG0880046043.01.T01 | AT5G46330 | 34.532 | 139 | 81 | 6 | 31 | 159 | 208 | 346 | 2.79e-11 | 62.0 |
| MsG0880046043.01.T01 | AT5G46330 | 34.532 | 139 | 81 | 6 | 31 | 159 | 208 | 346 | 2.79e-11 | 62.0 |
Find 39 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGGAAGCTTGAATGTT+TGG | 0.356554 | 8:-68208980 | MsG0880046043.01.T01:CDS |
| GACACAATCCTTGAGCTTAG+AGG | 0.359428 | 8:-68209451 | MsG0880046043.01.T01:CDS |
| CTTAGATTACCAATTGTTGT+AGG | 0.360128 | 8:+68208919 | None:intergenic |
| TCAAGATTTCCAATTGATCT+TGG | 0.363029 | 8:+68208776 | None:intergenic |
| AAAGCACTTCCTGAGGCAAT+TGG | 0.364664 | 8:-68208997 | MsG0880046043.01.T01:CDS |
| GAGGAACTACCTTTCACAAT+AGG | 0.379571 | 8:-68209066 | MsG0880046043.01.T01:CDS |
| TCTTGAAATGCTTGAGGAGT+TGG | 0.395145 | 8:-68208759 | MsG0880046043.01.T01:CDS |
| GAATGGTTACCATTATCAAT+TGG | 0.420788 | 8:-68209409 | MsG0880046043.01.T01:CDS |
| GATAAGATGTTTCAAACCTT+CGG | 0.422252 | 8:-68210141 | None:intergenic |
| AAGAGCATGCCAAGATCAAT+TGG | 0.425779 | 8:-68208785 | MsG0880046043.01.T01:CDS |
| AGGGAAATTAGTGGATCAAA+TGG | 0.429833 | 8:-68209431 | MsG0880046043.01.T01:CDS |
| ATTATCTGATGTTACTCAAA+TGG | 0.433232 | 8:-68209383 | MsG0880046043.01.T01:CDS |
| TATTCAAAGAGCTTCTGAAT+TGG | 0.437272 | 8:-68210112 | MsG0880046043.01.T01:five_prime_UTR |
| AAGATGTTGCCTACAACAAT+TGG | 0.442078 | 8:-68208928 | MsG0880046043.01.T01:CDS |
| ACCAGAGAATTTCTGTTTCG+CGG | 0.456968 | 8:-68208851 | MsG0880046043.01.T01:CDS |
| AACCACATCTTCATATAAAG+TGG | 0.467359 | 8:+68210053 | None:intergenic |
| AAGCACTTCCTGAGGCAATT+GGG | 0.470425 | 8:-68208996 | MsG0880046043.01.T01:CDS |
| TGGTAATCTAAGTAATTTGA+AGG | 0.480467 | 8:-68208908 | MsG0880046043.01.T01:CDS |
| ACCGCGAAACAGAAATTCTC+TGG | 0.483459 | 8:+68208850 | None:intergenic |
| GAAATTGAGTCTTATGAAAG+TGG | 0.486797 | 8:-68209506 | MsG0880046043.01.T01:exon |
| TGAGCTTAGAGGGAAATTAG+TGG | 0.511400 | 8:-68209440 | MsG0880046043.01.T01:CDS |
| TCAAGCTTCCCAATTGCCTC+AGG | 0.515674 | 8:+68208988 | None:intergenic |
| AGATGTGGTTACCTATGAAA+AGG | 0.516205 | 8:-68210040 | MsG0880046043.01.T01:five_prime_UTR |
| ACACAATCCTTGAGCTTAGA+GGG | 0.519790 | 8:-68209450 | MsG0880046043.01.T01:CDS |
| CTTATCTGAAAACAGAATCA+TGG | 0.523172 | 8:-68209359 | MsG0880046043.01.T01:CDS |
| TACCTATGAAAAGGAGGAAG+AGG | 0.525294 | 8:-68210031 | MsG0880046043.01.T01:five_prime_UTR |
| TGAATTGGTTTCTCCTGATG+AGG | 0.536459 | 8:-68210097 | MsG0880046043.01.T01:five_prime_UTR |
| CTAATTTCCCTCTAAGCTCA+AGG | 0.538280 | 8:+68209443 | None:intergenic |
| CTTTAGACCTACAATTGTGT+TGG | 0.557416 | 8:+68209331 | None:intergenic |
| TCCCACTTTATATGAAGATG+TGG | 0.559097 | 8:-68210055 | MsG0880046043.01.T01:five_prime_UTR |
| TGGAAATCTTGAAATGCTTG+AGG | 0.565640 | 8:-68208765 | MsG0880046043.01.T01:CDS |
| AGCTTGAAGAAACTAAACTT+AGG | 0.575575 | 8:-68208826 | MsG0880046043.01.T01:CDS |
| AATTAGTGGATCAAATGGAA+TGG | 0.580977 | 8:-68209426 | MsG0880046043.01.T01:CDS |
| TCTTTGAATAAGATCACCGA+AGG | 0.605643 | 8:+68210125 | None:intergenic |
| GTGCAGTTACCTATTGTGAA+AGG | 0.606343 | 8:+68209057 | None:intergenic |
| ACCACATCTTCATATAAAGT+GGG | 0.613114 | 8:+68210054 | None:intergenic |
| TGTGGTTACCTATGAAAAGG+AGG | 0.617536 | 8:-68210037 | MsG0880046043.01.T01:five_prime_UTR |
| CGTCGAGACGAATAAGCTTG+AGG | 0.659852 | 8:-68209085 | MsG0880046043.01.T01:CDS |
| TGAACTCAAAGCACTTCCTG+AGG | 0.663914 | 8:-68209004 | MsG0880046043.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATTGTTTTCTTTAAT+TGG | + | Chr8:68209320-68209339 | None:intergenic | 10.0% |
| !!! | ATATATTGTTTTCTTTAATT+GGG | + | Chr8:68209319-68209338 | None:intergenic | 10.0% |
| !! | ATAGTATTAATAAACTTGGT+TGG | + | Chr8:68209041-68209060 | None:intergenic | 20.0% |
| !! | CAAGTTTATTAATACTATCA+TGG | - | Chr8:68209043-68209062 | MsG0880046043.01.T01:CDS | 20.0% |
| !! | CAATAAATTAAAATCACTTC+CGG | - | Chr8:68209674-68209693 | MsG0880046043.01.T01:intron | 20.0% |
| !! | CATGATAGTATTAATAAACT+TGG | + | Chr8:68209045-68209064 | None:intergenic | 20.0% |
| !! | TATTAATACTATCATGGATT+TGG | - | Chr8:68209049-68209068 | MsG0880046043.01.T01:CDS | 20.0% |
| !!! | ATTTTAATTTATTGGCATGT+AGG | + | Chr8:68209668-68209687 | None:intergenic | 20.0% |
| !!! | GATAATTTTCCAATTGATAA+TGG | + | Chr8:68209491-68209510 | None:intergenic | 20.0% |
| !!! | GGTTTTTCAATAATTTTACT+TGG | - | Chr8:68208950-68208969 | MsG0880046043.01.T01:CDS | 20.0% |
| !!! | TGATTTGACTTTAATTTTGT+AGG | - | Chr8:68209345-68209364 | MsG0880046043.01.T01:CDS | 20.0% |
| !!! | TTATTTCTATAATCACTACA+CGG | - | Chr8:68209161-68209180 | MsG0880046043.01.T01:intron | 20.0% |
| ! | AAAATAGCGTATAGCTTATA+TGG | - | Chr8:68209193-68209212 | MsG0880046043.01.T01:intron | 25.0% |
| ! | ATTATCTGATGTTACTCAAA+TGG | - | Chr8:68209505-68209524 | MsG0880046043.01.T01:exon | 25.0% |
| ! | CGTAAAAGTTATATCATAAG+TGG | - | Chr8:68209262-68209281 | MsG0880046043.01.T01:intron | 25.0% |
| ! | GAAAAACCTGTTAACAAAAA+CGG | + | Chr8:68208938-68208957 | None:intergenic | 25.0% |
| ! | GTTTGAATTATATATCTCCA+TGG | - | Chr8:68208989-68209008 | MsG0880046043.01.T01:CDS | 25.0% |
| ! | TATCAATTCACAAATGAGTT+TGG | + | Chr8:68209628-68209647 | None:intergenic | 25.0% |
| ! | TGGTAATCTAAGTAATTTGA+AGG | - | Chr8:68209980-68209999 | MsG0880046043.01.T01:intron | 25.0% |
| !!! | CGGAAGTGATTTTAATTTAT+TGG | + | Chr8:68209676-68209695 | None:intergenic | 25.0% |
| AACCACATCTTCATATAAAG+TGG | + | Chr8:68208838-68208857 | None:intergenic | 30.0% | |
| AATTCACAAATGAGTTTGGA+AGG | + | Chr8:68209624-68209643 | None:intergenic | 30.0% | |
| ACCACATCTTCATATAAAGT+GGG | + | Chr8:68208837-68208856 | None:intergenic | 30.0% | |
| AGCTTGAAGAAACTAAACTT+AGG | - | Chr8:68210062-68210081 | MsG0880046043.01.T01:five_prime_UTR | 30.0% | |
| CTTAGATTACCAATTGTTGT+AGG | + | Chr8:68209972-68209991 | None:intergenic | 30.0% | |
| CTTATCTGAAAACAGAATCA+TGG | - | Chr8:68209529-68209548 | MsG0880046043.01.T01:intron | 30.0% | |
| GAATGGTTACCATTATCAAT+TGG | - | Chr8:68209479-68209498 | MsG0880046043.01.T01:CDS | 30.0% | |
| GTCTTACAAGTGCTTAAAAT+CGG | + | Chr8:68209119-68209138 | None:intergenic | 30.0% | |
| TATCTCCATGGTTATACTTT+CGG | - | Chr8:68209001-68209020 | MsG0880046043.01.T01:CDS | 30.0% | |
| TATTCAAAGAGCTTCTGAAT+TGG | - | Chr8:68208776-68208795 | MsG0880046043.01.T01:CDS | 30.0% | |
| TCAAGATTTCCAATTGATCT+TGG | + | Chr8:68210115-68210134 | None:intergenic | 30.0% | |
| ! | AATTAGTGGATCAAATGGAA+TGG | - | Chr8:68209462-68209481 | MsG0880046043.01.T01:CDS | 30.0% |
| ! | ATACTATCATGGATTTGGTT+AGG | - | Chr8:68209054-68209073 | MsG0880046043.01.T01:CDS | 30.0% |
| ! | CAAAAGAGTGATGATTTTGA+AGG | - | Chr8:68208888-68208907 | MsG0880046043.01.T01:CDS | 30.0% |
| ! | GAAATTGAGTCTTATGAAAG+TGG | - | Chr8:68209382-68209401 | MsG0880046043.01.T01:CDS | 30.0% |
| ! | TCAAAATCATCACTCTTTTG+TGG | + | Chr8:68208888-68208907 | None:intergenic | 30.0% |
| ! | TTTTTCTTTGTATCCTCATC+AGG | + | Chr8:68208807-68208826 | None:intergenic | 30.0% |
| !! | GACTTTAATTTTGTAGGAGA+TGG | - | Chr8:68209351-68209370 | MsG0880046043.01.T01:CDS | 30.0% |
| !! | TGATGATTTTGAAGGTGAAA+AGG | - | Chr8:68208896-68208915 | MsG0880046043.01.T01:CDS | 30.0% |
| AAGATGTTGCCTACAACAAT+TGG | - | Chr8:68209960-68209979 | MsG0880046043.01.T01:intron | 35.0% | |
| AATTGGGAAGCTTGAATGTT+TGG | - | Chr8:68209908-68209927 | MsG0880046043.01.T01:intron | 35.0% | |
| AGATGTGGTTACCTATGAAA+AGG | - | Chr8:68208848-68208867 | MsG0880046043.01.T01:CDS | 35.0% | |
| CAACACAATTGTAGGTCTAA+AGG | - | Chr8:68209558-68209577 | MsG0880046043.01.T01:intron | 35.0% | |
| CTTTAGACCTACAATTGTGT+TGG | + | Chr8:68209560-68209579 | None:intergenic | 35.0% | |
| TCCCACTTTATATGAAGATG+TGG | - | Chr8:68208833-68208852 | MsG0880046043.01.T01:CDS | 35.0% | |
| TCTTTGAATAAGATCACCGA+AGG | + | Chr8:68208766-68208785 | None:intergenic | 35.0% | |
| TGGAAATCTTGAAATGCTTG+AGG | - | Chr8:68210123-68210142 | MsG0880046043.01.T01:five_prime_UTR | 35.0% | |
| ! | AAATCACTTCCGGATACTTT+TGG | - | Chr8:68209684-68209703 | MsG0880046043.01.T01:intron | 35.0% |
| ! | AGGGAAATTAGTGGATCAAA+TGG | - | Chr8:68209457-68209476 | MsG0880046043.01.T01:CDS | 35.0% |
| !! | GTCAACTTTCCAAAAGTATC+CGG | + | Chr8:68209696-68209715 | None:intergenic | 35.0% |
| ACACAATCCTTGAGCTTAGA+GGG | - | Chr8:68209438-68209457 | MsG0880046043.01.T01:CDS | 40.0% | |
| ACACATCTGCATGAGTCAAT+TGG | - | Chr8:68209753-68209772 | MsG0880046043.01.T01:intron | 40.0% | |
| ACCAGAGAATTTCTGTTTCG+CGG | - | Chr8:68210037-68210056 | MsG0880046043.01.T01:five_prime_UTR | 40.0% | |
| AGTTTGGAAGGTTTATGAGC+TGG | + | Chr8:68209612-68209631 | None:intergenic | 40.0% | |
| CACATCTGCATGAGTCAATT+GGG | - | Chr8:68209754-68209773 | MsG0880046043.01.T01:intron | 40.0% | |
| CATGTAGGTCAAGTTCAGTA+AGG | + | Chr8:68209653-68209672 | None:intergenic | 40.0% | |
| CTAATTTCCCTCTAAGCTCA+AGG | + | Chr8:68209448-68209467 | None:intergenic | 40.0% | |
| GAGGAACTACCTTTCACAAT+AGG | - | Chr8:68209822-68209841 | MsG0880046043.01.T01:intron | 40.0% | |
| GTGCAGTTACCTATTGTGAA+AGG | + | Chr8:68209834-68209853 | None:intergenic | 40.0% | |
| TACCTATGAAAAGGAGGAAG+AGG | - | Chr8:68208857-68208876 | MsG0880046043.01.T01:CDS | 40.0% | |
| TCTTGAAATGCTTGAGGAGT+TGG | - | Chr8:68210129-68210148 | MsG0880046043.01.T01:five_prime_UTR | 40.0% | |
| TGAGCTTAGAGGGAAATTAG+TGG | - | Chr8:68209448-68209467 | MsG0880046043.01.T01:CDS | 40.0% | |
| TGTGGTTACCTATGAAAAGG+AGG | - | Chr8:68208851-68208870 | MsG0880046043.01.T01:CDS | 40.0% | |
| ! | AAGAGCATGCCAAGATCAAT+TGG | - | Chr8:68210103-68210122 | MsG0880046043.01.T01:five_prime_UTR | 40.0% |
| ! | TGAATTGGTTTCTCCTGATG+AGG | - | Chr8:68208791-68208810 | MsG0880046043.01.T01:CDS | 40.0% |
| ! | TTCCTCTTCCTCCTTTTCAT+AGG | + | Chr8:68208862-68208881 | None:intergenic | 40.0% |
| !!! | CACAAGCCGTTTTTGTTAAC+AGG | - | Chr8:68208929-68208948 | MsG0880046043.01.T01:CDS | 40.0% |
| AAGCACTTCCTGAGGCAATT+GGG | - | Chr8:68209892-68209911 | MsG0880046043.01.T01:intron | 45.0% | |
| ACCGCGAAACAGAAATTCTC+TGG | + | Chr8:68210041-68210060 | None:intergenic | 45.0% | |
| CAAAAACGGCTTGTGCACTA+AGG | + | Chr8:68208924-68208943 | None:intergenic | 45.0% | |
| GACACAATCCTTGAGCTTAG+AGG | - | Chr8:68209437-68209456 | MsG0880046043.01.T01:CDS | 45.0% | |
| GGCTCTTCCAACACAATTGT+AGG | - | Chr8:68209550-68209569 | MsG0880046043.01.T01:intron | 45.0% | |
| ! | AAAGCACTTCCTGAGGCAAT+TGG | - | Chr8:68209891-68209910 | MsG0880046043.01.T01:intron | 45.0% |
| ! | AGACGCCGAAAGTATAACCA+TGG | + | Chr8:68209009-68209028 | None:intergenic | 45.0% |
| ! | TGAACTCAAAGCACTTCCTG+AGG | - | Chr8:68209884-68209903 | MsG0880046043.01.T01:intron | 45.0% |
| CGTCGAGACGAATAAGCTTG+AGG | - | Chr8:68209803-68209822 | MsG0880046043.01.T01:intron | 50.0% | |
| TCAAGCTTCCCAATTGCCTC+AGG | + | Chr8:68209903-68209922 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 68208753 | 68210157 | 68208753 | ID=MsG0880046043.01;Name=MsG0880046043.01 |
| Chr8 | mRNA | 68208753 | 68210157 | 68208753 | ID=MsG0880046043.01.T01;Parent=MsG0880046043.01;Name=MsG0880046043.01.T01;_AED=0.46;_eAED=0.58;_QI=201|0|0|1|1|1|3|0|180 |
| Chr8 | exon | 68209985 | 68210157 | 68209985 | ID=MsG0880046043.01.T01:exon:12846;Parent=MsG0880046043.01.T01 |
| Chr8 | exon | 68209343 | 68209543 | 68209343 | ID=MsG0880046043.01.T01:exon:12845;Parent=MsG0880046043.01.T01 |
| Chr8 | exon | 68208753 | 68209122 | 68208753 | ID=MsG0880046043.01.T01:exon:12844;Parent=MsG0880046043.01.T01 |
| Chr8 | five_prime_UTR | 68209985 | 68210157 | 68209985 | ID=MsG0880046043.01.T01:five_prime_utr;Parent=MsG0880046043.01.T01 |
| Chr8 | five_prime_UTR | 68209516 | 68209543 | 68209516 | ID=MsG0880046043.01.T01:five_prime_utr;Parent=MsG0880046043.01.T01 |
| Chr8 | CDS | 68209343 | 68209515 | 68209343 | ID=MsG0880046043.01.T01:cds;Parent=MsG0880046043.01.T01 |
| Chr8 | CDS | 68208753 | 68209122 | 68208753 | ID=MsG0880046043.01.T01:cds;Parent=MsG0880046043.01.T01 |
| Gene Sequence |
| Protein sequence |
