Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004464.01.T01 | RDX92099.1 | 43.953 | 339 | 51 | 4 | 45 | 248 | 36 | 370 | 2.33E-75 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004464.01.T01 | A0A371GNF8 | 43.953 | 339 | 51 | 4 | 45 | 248 | 36 | 370 | 1.11e-75 | 249 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048035.01 | MsG0180004464.01 | 0.812378 | 4.370012e-51 | 2.774052e-48 |
| MsG0080048178.01 | MsG0180004464.01 | 0.819856 | 9.324799e-53 | 7.259905e-50 |
| MsG0080048207.01 | MsG0180004464.01 | 0.822449 | 2.354378e-53 | 1.971358e-50 |
| MsG0180000089.01 | MsG0180004464.01 | 0.818425 | 1.973116e-52 | 1.476536e-49 |
| MsG0180000196.01 | MsG0180004464.01 | 0.829473 | 5.046889e-55 | 5.170483e-52 |
| MsG0180000220.01 | MsG0180004464.01 | 0.853822 | 1.852810e-61 | 4.055009e-58 |
| MsG0180000222.01 | MsG0180004464.01 | 0.803794 | 2.940227e-49 | 1.491143e-46 |
| MsG0180000266.01 | MsG0180004464.01 | 0.804249 | 2.365363e-49 | 1.213605e-46 |
| MsG0180000307.01 | MsG0180004464.01 | 0.803449 | 3.467483e-49 | 1.742990e-46 |
| MsG0180000555.01 | MsG0180004464.01 | 0.804274 | 2.336872e-49 | 1.199815e-46 |
| MsG0180000597.01 | MsG0180004464.01 | 0.835228 | 1.896247e-56 | 2.304487e-53 |
| MsG0180000856.01 | MsG0180004464.01 | 0.847407 | 1.179518e-59 | 2.094440e-56 |
| MsG0180001312.01 | MsG0180004464.01 | 0.808244 | 3.406753e-50 | 1.938069e-47 |
| MsG0180002071.01 | MsG0180004464.01 | 0.816236 | 6.135071e-52 | 4.323312e-49 |
| MsG0180003167.01 | MsG0180004464.01 | 0.850947 | 1.221136e-60 | 2.432431e-57 |
| MsG0180003948.01 | MsG0180004464.01 | 0.845048 | 5.178361e-59 | 8.523251e-56 |
| MsG0180004139.01 | MsG0180004464.01 | 0.818480 | 1.918136e-52 | 1.437488e-49 |
| MsG0180004372.01 | MsG0180004464.01 | 0.801148 | 1.032222e-48 | 4.893724e-46 |
| MsG0180004462.01 | MsG0180004464.01 | 0.959389 | 2.180754e-117 | 8.679955e-112 |
| MsG0180004464.01 | MsG0180004871.01 | 0.812471 | 4.170459e-51 | 2.654116e-48 |
| MsG0180004464.01 | MsG0180004986.01 | 0.831155 | 1.959724e-55 | 2.108773e-52 |
| MsG0180004464.01 | MsG0180005172.01 | 0.868811 | 4.946060e-66 | 1.813648e-62 |
| MsG0180004464.01 | MsG0180005285.01 | 0.831384 | 1.721217e-55 | 1.864863e-52 |
| MsG0180004464.01 | MsG0180005331.01 | 0.805183 | 1.509300e-49 | 7.932917e-47 |
| MsG0180004464.01 | MsG0180005813.01 | 0.813535 | 2.437059e-51 | 1.595747e-48 |
| MsG0180004464.01 | MsG0180006047.01 | 0.816144 | 6.432336e-52 | 4.521472e-49 |
| MsG0180004464.01 | MsG0180006106.01 | 0.802569 | 5.272427e-49 | 2.591231e-46 |
| MsG0180004464.01 | MsG0180006207.01 | 0.807076 | 6.029882e-50 | 3.326986e-47 |
| MsG0180004464.01 | MsG0280006341.01 | 0.866137 | 3.551091e-65 | 1.184285e-61 |
| MsG0180004464.01 | MsG0280006356.01 | 0.842579 | 2.372108e-58 | 3.612640e-55 |
| MsG0180004464.01 | MsG0280006432.01 | 0.838918 | 2.161359e-57 | 2.937462e-54 |
| MsG0180004464.01 | MsG0280006462.01 | 0.819176 | 1.332519e-52 | 1.017946e-49 |
| MsG0180004464.01 | MsG0280006473.01 | 0.806330 | 8.670554e-50 | 4.693170e-47 |
| MsG0180004464.01 | MsG0280006976.01 | 0.808865 | 2.510561e-50 | 1.451599e-47 |
| MsG0180004464.01 | MsG0280007117.01 | 0.800727 | 1.258087e-48 | 5.901066e-46 |
| MsG0180004464.01 | MsG0280007120.01 | 0.834920 | 2.266651e-56 | 2.729100e-53 |
| MsG0180004464.01 | MsG0280007272.01 | 0.805676 | 1.189852e-49 | 6.333717e-47 |
| MsG0180004464.01 | MsG0280007741.01 | 0.826706 | 2.341157e-54 | 2.212419e-51 |
| MsG0180004464.01 | MsG0280008073.01 | 0.851418 | 8.990710e-61 | 1.818762e-57 |
| MsG0180004464.01 | MsG0280008116.01 | 0.837742 | 4.344582e-57 | 5.697180e-54 |
| MsG0180004464.01 | MsG0280008849.01 | 0.821438 | 4.037604e-53 | 3.284772e-50 |
| MsG0180004464.01 | MsG0280008856.01 | 0.818273 | 2.136324e-52 | 1.591748e-49 |
| MsG0180004464.01 | MsG0280008970.01 | 0.800605 | 1.332386e-48 | 6.230264e-46 |
| MsG0180004464.01 | MsG0280009349.01 | 0.821131 | 4.753373e-53 | 3.834317e-50 |
| MsG0180004464.01 | MsG0280010459.01 | 0.807502 | 4.898826e-50 | 2.733174e-47 |
| MsG0180004464.01 | MsG0280010614.01 | 0.838300 | 3.121994e-57 | 4.163497e-54 |
| MsG0180004464.01 | MsG0280011085.01 | 0.826548 | 2.554409e-54 | 2.402935e-51 |
| MsG0180004464.01 | MsG0280011131.01 | 0.837359 | 5.446511e-57 | 7.057122e-54 |
| MsG0180004464.01 | MsG0280011285.01 | 0.818374 | 2.026989e-52 | 1.514703e-49 |
| MsG0180004464.01 | MsG0280011348.01 | 0.823201 | 1.573244e-53 | 1.345582e-50 |
| MsG0180004464.01 | MsG0380011647.01 | 0.849281 | 3.576670e-60 | 6.746367e-57 |
| MsG0180004464.01 | MsG0380012124.01 | 0.802255 | 6.118146e-49 | 2.983065e-46 |
| MsG0180004464.01 | MsG0380013682.01 | 0.823229 | 1.549985e-53 | 1.326704e-50 |
| MsG0180004464.01 | MsG0380014573.01 | 0.862676 | 4.280014e-64 | 1.263789e-60 |
| MsG0180004464.01 | MsG0380015771.01 | 0.805700 | 1.176279e-49 | 6.265550e-47 |
| MsG0180004464.01 | MsG0380015878.01 | 0.842069 | 3.238406e-58 | 4.853319e-55 |
| MsG0180004464.01 | MsG0380015924.01 | 0.803506 | 3.374534e-49 | 1.698811e-46 |
| MsG0180004464.01 | MsG0380015931.01 | 0.874431 | 6.791225e-68 | 3.056573e-64 |
| MsG0180004464.01 | MsG0380015986.01 | 0.807133 | 5.865576e-50 | 3.241115e-47 |
| MsG0180004464.01 | MsG0380016603.01 | 0.807644 | 4.569625e-50 | 2.558819e-47 |
| MsG0180004464.01 | MsG0380017092.01 | 0.877207 | 7.563127e-69 | 3.771287e-65 |
| MsG0180004464.01 | MsG0380017139.01 | 0.810143 | 1.334437e-50 | 7.981667e-48 |
| MsG0180004464.01 | MsG0380017158.01 | 0.802273 | 6.065661e-49 | 2.958851e-46 |
| MsG0180004464.01 | MsG0380017714.01 | 0.809052 | 2.288803e-50 | 1.330041e-47 |
| MsG0180004464.01 | MsG0380017946.01 | 0.829127 | 6.124819e-55 | 6.211635e-52 |
| MsG0180004464.01 | MsG0480018998.01 | 0.828961 | 6.720158e-55 | 6.781582e-52 |
| MsG0180004464.01 | MsG0480019056.01 | 0.814482 | 1.506733e-51 | 1.012234e-48 |
| MsG0180004464.01 | MsG0480019395.01 | 0.807775 | 4.286008e-50 | 2.408256e-47 |
| MsG0180004464.01 | MsG0480019502.01 | 0.833745 | 4.469140e-56 | 5.194210e-53 |
| MsG0180004464.01 | MsG0480019574.01 | 0.818355 | 2.047059e-52 | 1.528881e-49 |
| MsG0180004464.01 | MsG0480019816.01 | 0.814298 | 1.654310e-51 | 1.105865e-48 |
| MsG0180004464.01 | MsG0480020225.01 | 0.824402 | 8.232367e-54 | 7.283887e-51 |
| MsG0180004464.01 | MsG0480020445.01 | 0.802412 | 5.678981e-49 | 2.780108e-46 |
| MsG0180004464.01 | MsG0480020886.01 | 0.801489 | 8.788079e-49 | 4.202345e-46 |
| MsG0180004464.01 | MsG0480021134.01 | 0.862567 | 4.625816e-64 | 1.360760e-60 |
| MsG0180004464.01 | MsG0480021204.01 | 0.806063 | 9.864756e-50 | 5.303528e-47 |
| MsG0180004464.01 | MsG0480021554.01 | 0.805202 | 1.495690e-49 | 7.865272e-47 |
| MsG0180004464.01 | MsG0480022016.01 | 0.824400 | 8.239424e-54 | 7.289771e-51 |
| MsG0180004464.01 | MsG0480022408.01 | 0.825364 | 4.881209e-54 | 4.439548e-51 |
| MsG0180004464.01 | MsG0480022479.01 | 0.843761 | 1.148834e-58 | 1.815696e-55 |
| MsG0180004464.01 | MsG0480022480.01 | 0.800450 | 1.432860e-48 | 6.673790e-46 |
| MsG0180004464.01 | MsG0480023024.01 | 0.805944 | 1.045140e-49 | 5.601847e-47 |
| MsG0180004464.01 | MsG0480023224.01 | 0.800773 | 1.231567e-48 | 5.783191e-46 |
| MsG0180004464.01 | MsG0480023460.01 | 0.816099 | 6.584128e-52 | 4.622589e-49 |
| MsG0180004464.01 | MsG0580024205.01 | 0.827016 | 1.974251e-54 | 1.882554e-51 |
| MsG0180004464.01 | MsG0580024433.01 | 0.807447 | 5.033255e-50 | 2.804093e-47 |
| MsG0180004464.01 | MsG0580024682.01 | 0.818532 | 1.865897e-52 | 1.400357e-49 |
| MsG0180004464.01 | MsG0580024770.01 | 0.809526 | 1.811595e-50 | 1.066131e-47 |
| MsG0180004464.01 | MsG0580025758.01 | 0.819733 | 9.947918e-53 | 7.718477e-50 |
| MsG0180004464.01 | MsG0580025907.01 | 0.863644 | 2.149334e-64 | 6.562808e-61 |
| MsG0180004464.01 | MsG0580026596.01 | 0.820520 | 6.568771e-53 | 5.209057e-50 |
| MsG0180004464.01 | MsG0580027129.01 | 0.843014 | 1.818081e-58 | 2.806403e-55 |
| MsG0180004464.01 | MsG0580027773.01 | 0.859406 | 4.229910e-63 | 1.116035e-59 |
| MsG0180004464.01 | MsG0580027847.01 | 0.816828 | 4.521280e-52 | 3.238040e-49 |
| MsG0180004464.01 | MsG0580029798.01 | 0.805695 | 1.179147e-49 | 6.280007e-47 |
| MsG0180004464.01 | MsG0580029906.01 | 0.833296 | 5.786703e-56 | 6.635876e-53 |
| MsG0180004464.01 | MsG0680030656.01 | 0.805586 | 1.242646e-49 | 6.599349e-47 |
| MsG0180004464.01 | MsG0680032017.01 | 0.835184 | 1.945450e-56 | 2.360881e-53 |
| MsG0180004464.01 | MsG0680032957.01 | 0.819041 | 1.430006e-52 | 1.088459e-49 |
| MsG0180004464.01 | MsG0680034067.01 | 0.836068 | 1.162120e-56 | 1.448296e-53 |
| MsG0180004464.01 | MsG0680034450.01 | 0.810835 | 9.459164e-51 | 5.762827e-48 |
| MsG0180004464.01 | MsG0680035656.01 | 0.831905 | 1.280316e-55 | 1.408923e-52 |
| MsG0180004464.01 | MsG0680035681.01 | 0.824852 | 6.446774e-54 | 5.779228e-51 |
| MsG0180004464.01 | MsG0680035737.01 | 0.858636 | 7.190352e-63 | 1.847224e-59 |
| MsG0180004464.01 | MsG0780036906.01 | 0.811396 | 7.148350e-51 | 4.420077e-48 |
| MsG0180004464.01 | MsG0780038113.01 | 0.844683 | 6.496964e-59 | 1.056975e-55 |
| MsG0180004464.01 | MsG0780038444.01 | 0.808750 | 2.656303e-50 | 1.531207e-47 |
| MsG0180004464.01 | MsG0780039249.01 | 0.830540 | 2.772646e-55 | 2.929749e-52 |
| MsG0180004464.01 | MsG0780040442.01 | 0.828106 | 1.081247e-54 | 1.064401e-51 |
| MsG0180004464.01 | MsG0780040679.01 | 0.815705 | 8.062158e-52 | 5.599388e-49 |
| MsG0180004464.01 | MsG0780041310.01 | 0.800869 | 1.177379e-48 | 5.542520e-46 |
| MsG0180004464.01 | MsG0780041787.01 | 0.803415 | 3.524207e-49 | 1.769939e-46 |
| MsG0180004464.01 | MsG0880042049.01 | 0.805228 | 1.477564e-49 | 7.774703e-47 |
| MsG0180004464.01 | MsG0880042329.01 | 0.820715 | 5.924420e-53 | 4.723735e-50 |
| MsG0180004464.01 | MsG0880042589.01 | 0.806253 | 8.999821e-50 | 4.861988e-47 |
| MsG0180004464.01 | MsG0880042843.01 | 0.823941 | 1.055851e-53 | 9.221878e-51 |
| MsG0180004464.01 | MsG0880042967.01 | 0.820336 | 7.238841e-53 | 5.711398e-50 |
| MsG0180004464.01 | MsG0880043145.01 | 0.809687 | 1.672734e-50 | 9.886579e-48 |
| MsG0180004464.01 | MsG0880043591.01 | 0.837733 | 4.367283e-57 | 5.725447e-54 |
| MsG0180004464.01 | MsG0880043921.01 | 0.837344 | 5.495261e-57 | 7.116977e-54 |
| MsG0180004464.01 | MsG0880044100.01 | 0.853868 | 1.797947e-61 | 3.941054e-58 |
| MsG0180004464.01 | MsG0880045290.01 | 0.812758 | 3.608912e-51 | 2.313974e-48 |
| MsG0180004464.01 | MsG0880045429.01 | 0.828190 | 1.031798e-54 | 1.018207e-51 |
| MsG0180004464.01 | MsG0880045782.01 | 0.809841 | 1.550192e-50 | 9.199513e-48 |
| MsG0180004464.01 | MsG0880045827.01 | 0.816784 | 4.625735e-52 | 3.308955e-49 |
| MsG0180004464.01 | MsG0880046043.01 | 0.810227 | 1.279934e-50 | 7.672223e-48 |
| MsG0180004464.01 | MsG0880046226.01 | 0.878801 | 2.092339e-69 | 1.107276e-65 |
| MsG0180004464.01 | MsG0880046467.01 | 0.822572 | 2.205137e-53 | 1.852939e-50 |
| MsG0180004464.01 | MsG0880046642.01 | 0.815066 | 1.118077e-51 | 7.630402e-49 |
| MsG0180004464.01 | MsG0880047233.01 | 0.821043 | 4.980934e-53 | 4.008381e-50 |
| MsG0180004464.01 | MsG0880047308.01 | 0.836490 | 9.078133e-57 | 1.145751e-53 |
| MsG0180004464.01 | MsG0880047497.01 | 0.829366 | 5.359430e-55 | 5.474146e-52 |
| MsG0180004464.01 | MsG0880047571.01 | 0.825810 | 3.827053e-54 | 3.525583e-51 |
| MsG0180004464.01 | MsG0880047705.01 | 0.824095 | 9.715503e-54 | 8.521715e-51 |
| MsG0180004464.01 | MsG0880047745.01 | 0.813450 | 2.543433e-51 | 1.661627e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004464.01.T01 | MTR_1g080370 | 71.631 | 141 | 9 | 1 | 45 | 154 | 36 | 176 | 1.39e-59 | 199 |
| MsG0180004464.01.T01 | MTR_1g080370 | 52.907 | 172 | 25 | 2 | 133 | 248 | 232 | 403 | 2.68e-45 | 161 |
| MsG0180004464.01.T01 | MTR_1g080410 | 71.631 | 141 | 9 | 1 | 45 | 154 | 36 | 176 | 1.39e-59 | 199 |
| MsG0180004464.01.T01 | MTR_1g080410 | 52.907 | 172 | 25 | 2 | 133 | 248 | 232 | 403 | 2.68e-45 | 161 |
| MsG0180004464.01.T01 | MTR_4g077620 | 46.043 | 139 | 25 | 2 | 146 | 234 | 261 | 399 | 1.65e-30 | 120 |
| MsG0180004464.01.T01 | MTR_4g077620 | 33.803 | 142 | 57 | 4 | 46 | 151 | 42 | 182 | 3.62e-17 | 82.0 |
| MsG0180004464.01.T01 | MTR_5g007860 | 38.961 | 154 | 43 | 1 | 146 | 248 | 298 | 451 | 9.25e-29 | 115 |
| MsG0180004464.01.T01 | MTR_5g007860 | 34.459 | 148 | 51 | 6 | 47 | 151 | 74 | 218 | 1.26e-16 | 80.5 |
| MsG0180004464.01.T01 | MTR_2g062430 | 35.484 | 155 | 48 | 2 | 146 | 248 | 248 | 402 | 1.38e-23 | 100 |
| MsG0180004464.01.T01 | MTR_2g062430 | 31.915 | 141 | 54 | 4 | 46 | 151 | 43 | 176 | 7.53e-11 | 62.8 |
| MsG0180004464.01.T01 | MTR_2g062370 | 34.839 | 155 | 49 | 2 | 146 | 248 | 276 | 430 | 6.28e-23 | 99.0 |
| MsG0180004464.01.T01 | MTR_2g062410 | 34.839 | 155 | 49 | 2 | 146 | 248 | 276 | 430 | 1.82e-22 | 97.4 |
| MsG0180004464.01.T01 | MTR_4g131710 | 30.534 | 262 | 96 | 10 | 68 | 248 | 170 | 426 | 2.77e-19 | 88.2 |
| MsG0180004464.01.T01 | MTR_2g062380 | 33.548 | 155 | 51 | 2 | 146 | 248 | 246 | 400 | 7.75e-19 | 87.0 |
| MsG0180004464.01.T01 | MTR_2g067640 | 32.692 | 156 | 52 | 3 | 146 | 248 | 243 | 398 | 7.71e-18 | 84.0 |
| MsG0180004464.01.T01 | MTR_2g067640 | 29.851 | 134 | 70 | 2 | 45 | 154 | 33 | 166 | 1.31e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004464.01.T01 | AT3G04350 | 44.286 | 140 | 27 | 1 | 146 | 234 | 235 | 374 | 7.30e-33 | 127 |
| MsG0180004464.01.T01 | AT3G04350 | 38.462 | 143 | 51 | 4 | 46 | 156 | 18 | 155 | 6.04e-20 | 90.1 |
| MsG0180004464.01.T01 | AT3G04350 | 44.286 | 140 | 27 | 1 | 146 | 234 | 257 | 396 | 1.05e-32 | 127 |
| MsG0180004464.01.T01 | AT3G04350 | 38.462 | 143 | 51 | 4 | 46 | 156 | 40 | 177 | 7.84e-20 | 89.7 |
| MsG0180004464.01.T01 | AT5G18490 | 42.857 | 140 | 29 | 1 | 146 | 234 | 245 | 384 | 1.42e-31 | 123 |
| MsG0180004464.01.T01 | AT5G18490 | 42.958 | 142 | 44 | 4 | 46 | 156 | 39 | 174 | 5.18e-25 | 105 |
| MsG0180004464.01.T01 | AT1G04090 | 38.012 | 171 | 50 | 2 | 134 | 248 | 243 | 413 | 9.78e-28 | 112 |
| MsG0180004464.01.T01 | AT1G04090 | 29.730 | 148 | 61 | 3 | 46 | 154 | 38 | 181 | 5.76e-15 | 75.5 |
| MsG0180004464.01.T01 | AT2G44260 | 33.548 | 155 | 51 | 2 | 146 | 248 | 274 | 428 | 2.43e-21 | 94.4 |
| MsG0180004464.01.T01 | AT2G44260 | 33.548 | 155 | 51 | 2 | 146 | 248 | 244 | 398 | 2.59e-21 | 94.4 |
| MsG0180004464.01.T01 | AT2G44230 | 34.752 | 141 | 40 | 1 | 146 | 234 | 233 | 373 | 5.57e-21 | 93.2 |
| MsG0180004464.01.T01 | AT5G43950 | 33.962 | 159 | 48 | 3 | 146 | 248 | 252 | 409 | 5.47e-18 | 84.3 |
| MsG0180004464.01.T01 | AT5G43950 | 31.159 | 138 | 66 | 3 | 46 | 154 | 38 | 175 | 5.95e-16 | 78.2 |
Find 80 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCATCAATGACACTTTA+AGG | 0.107306 | 1:-78346410 | None:intergenic |
| ATTACTAAGCTTGAAAATTA+AGG | 0.234121 | 1:-78345179 | None:intergenic |
| TAAACAAGTTTGAGAAAGTT+TGG | 0.235719 | 1:+78345469 | MsG0180004464.01.T01:CDS |
| CACTTAATTACTCATTAATA+TGG | 0.264581 | 1:+78345689 | MsG0180004464.01.T01:CDS |
| GGATCAGCGTCAAAGAATTC+TGG | 0.283321 | 1:-78344921 | None:intergenic |
| CATCGAACTTCTTCAACTTT+CGG | 0.340671 | 1:-78345811 | None:intergenic |
| TCTTCAACTTTCGGTTCATC+TGG | 0.342527 | 1:-78345802 | None:intergenic |
| TCTCTCTTCTTTCTAATAAG+AGG | 0.345722 | 1:+78344841 | MsG0180004464.01.T01:five_prime_UTR |
| ATGATGAATGTGTTTACTTT+TGG | 0.348745 | 1:+78345725 | MsG0180004464.01.T01:CDS |
| GACGGACCAGATATCAAGTT+TGG | 0.351841 | 1:-78347222 | None:intergenic |
| CGGTGAACATGTCGGTGATT+GGG | 0.353792 | 1:+78346449 | MsG0180004464.01.T01:CDS |
| CATGCTCTTATTGAGCATTA+CGG | 0.358178 | 1:+78346069 | MsG0180004464.01.T01:CDS |
| AATGACACTTTAAGGGTTGC+AGG | 0.360391 | 1:-78346402 | None:intergenic |
| ATGCTCTTATTGAGCATTAC+GGG | 0.370883 | 1:+78346070 | MsG0180004464.01.T01:CDS |
| TAAGAGGTTGCTTTGTGGTT+TGG | 0.377108 | 1:+78344857 | MsG0180004464.01.T01:five_prime_UTR |
| GTTCATCAATGACACTTTAA+GGG | 0.377575 | 1:-78346409 | None:intergenic |
| AAAATTCCAAACTTGATATC+TGG | 0.383640 | 1:+78347216 | MsG0180004464.01.T01:CDS |
| AACTTTCGGTTCATCTGGAT+TGG | 0.384698 | 1:-78345797 | None:intergenic |
| TTACTCATTAATATGGTGTA+TGG | 0.386638 | 1:+78345696 | MsG0180004464.01.T01:CDS |
| GTGGTTTGGTAAGGGATGTT+TGG | 0.395720 | 1:+78344871 | MsG0180004464.01.T01:exon |
| TCGGTGAACATGTCGGTGAT+TGG | 0.413964 | 1:+78346448 | MsG0180004464.01.T01:CDS |
| CATATTAATGAGTAATTAAG+TGG | 0.423515 | 1:-78345688 | None:intergenic |
| CCTTGTGGCCATTGCGGAAG+AGG | 0.425442 | 1:-78344965 | None:intergenic |
| AGGGTTGCAGGTCCATTGAA+TGG | 0.426014 | 1:-78346390 | None:intergenic |
| CCGACGGCTTTATAACCCTT+TGG | 0.428360 | 1:-78345760 | None:intergenic |
| GGTTGCTTTGTGGTTTGGTA+AGG | 0.431847 | 1:+78344862 | MsG0180004464.01.T01:five_prime_UTR |
| AAGAGGTGAAGGAAGAGAAA+GGG | 0.442404 | 1:-78344948 | None:intergenic |
| TCTAATAAGAGGTTGCTTTG+TGG | 0.443374 | 1:+78344852 | MsG0180004464.01.T01:five_prime_UTR |
| TTATAACCCTTTGGAGGGTT+AGG | 0.448233 | 1:-78345751 | None:intergenic |
| GATGGCATGTATTTCTCATC+AGG | 0.457793 | 1:-78346111 | None:intergenic |
| CCCAAGGGATATTCTTCCAC+CGG | 0.460403 | 1:-78345427 | None:intergenic |
| TGAAGGAAGAGAAAGGGAAG+TGG | 0.464094 | 1:-78344942 | None:intergenic |
| CGAGGACAGTTCTTGTCGCT+CGG | 0.465620 | 1:+78345605 | MsG0180004464.01.T01:intron |
| CCTTCGCGTGAGCAACTTCA+CGG | 0.475612 | 1:+78346483 | MsG0180004464.01.T01:CDS |
| GAAGAGGTGAAGGAAGAGAA+AGG | 0.481712 | 1:-78344949 | None:intergenic |
| GCAGGCACGTCAGTGGTCAT+TGG | 0.482146 | 1:+78347141 | MsG0180004464.01.T01:intron |
| ACGGCTTTATAACCCTTTGG+AGG | 0.486012 | 1:-78345757 | None:intergenic |
| TTTCGGTTCATCTGGATTGG+TGG | 0.487936 | 1:-78345794 | None:intergenic |
| GATCAGCGTCAAAGAATTCT+GGG | 0.494149 | 1:-78344920 | None:intergenic |
| TTCCTTCACCTCTTCCGCAA+TGG | 0.497042 | 1:+78344957 | MsG0180004464.01.T01:CDS |
| CCGTGAAGTTGCTCACGCGA+AGG | 0.500478 | 1:-78346483 | None:intergenic |
| GGGTTGCAGGTCCATTGAAT+GGG | 0.500640 | 1:-78346389 | None:intergenic |
| GCCGGTGGAAGAATATCCCT+TGG | 0.503378 | 1:+78345426 | MsG0180004464.01.T01:CDS |
| GAGCAACTTCACGGAGAGCT+TGG | 0.511998 | 1:+78346492 | MsG0180004464.01.T01:CDS |
| CCACATTGCAATATCAGTAA+AGG | 0.513990 | 1:-78346358 | None:intergenic |
| GGTGGCCGTTGGATCTAGAT+TGG | 0.518329 | 1:-78347244 | None:intergenic |
| TTGGTTGCCTAACCCTCCAA+AGG | 0.523651 | 1:+78345744 | MsG0180004464.01.T01:CDS |
| GTTGCTTTGTGGTTTGGTAA+GGG | 0.528648 | 1:+78344863 | MsG0180004464.01.T01:five_prime_UTR |
| GTATACTGCGGGTAATGCAA+AGG | 0.543009 | 1:+78346170 | MsG0180004464.01.T01:CDS |
| GGTGAACATGTCGGTGATTG+GGG | 0.543172 | 1:+78346450 | MsG0180004464.01.T01:CDS |
| GAGGACAGTTCTTGTCGCTC+GGG | 0.546201 | 1:+78345606 | MsG0180004464.01.T01:intron |
| AAGAGCTGGGGATTCTGACT+CGG | 0.549133 | 1:-78345659 | None:intergenic |
| CCGGTGGAAGAATATCCCTT+GGG | 0.549609 | 1:+78345427 | MsG0180004464.01.T01:CDS |
| AATTCTAACGGAAAGGCACT+AGG | 0.549895 | 1:+78345501 | MsG0180004464.01.T01:CDS |
| GGCCATTGCGGAAGAGGTGA+AGG | 0.550905 | 1:-78344959 | None:intergenic |
| ATCAGCACATCGGTGGCCGT+TGG | 0.551235 | 1:-78347255 | None:intergenic |
| CGGCTTTATAACCCTTTGGA+GGG | 0.557691 | 1:-78345756 | None:intergenic |
| GCCGTTGGATCTAGATTGGA+CGG | 0.562927 | 1:-78347240 | None:intergenic |
| CGTGAAGTTGCTCACGCGAA+GGG | 0.566811 | 1:-78346482 | None:intergenic |
| GACTCGGAACAATCAGCTTG+AGG | 0.567833 | 1:-78345643 | None:intergenic |
| TATACTGCGGGTAATGCAAA+GGG | 0.571900 | 1:+78346171 | MsG0180004464.01.T01:CDS |
| CATGTAAAACCAGCATTAGG+AGG | 0.572269 | 1:+78346333 | MsG0180004464.01.T01:intron |
| AACATTGAGATGAACAAGAT+CGG | 0.572272 | 1:+78346429 | MsG0180004464.01.T01:CDS |
| TGGAGATGCACAAATTCTAA+CGG | 0.580046 | 1:+78345489 | MsG0180004464.01.T01:CDS |
| TGGTTGCCTAACCCTCCAAA+GGG | 0.582899 | 1:+78345745 | MsG0180004464.01.T01:CDS |
| CCTCTTCCGCAATGGCCACA+AGG | 0.586239 | 1:+78344965 | MsG0180004464.01.T01:CDS |
| ACATGCCATCATCGGTGTCG+TGG | 0.595421 | 1:+78346124 | MsG0180004464.01.T01:CDS |
| TCCGTCCAATCTAGATCCAA+CGG | 0.595498 | 1:+78347239 | MsG0180004464.01.T01:CDS |
| TATTGAGCATTACGGGCCAA+CGG | 0.595833 | 1:+78346077 | MsG0180004464.01.T01:CDS |
| TGAGAAATACATGCCATCAT+CGG | 0.607689 | 1:+78346116 | MsG0180004464.01.T01:CDS |
| AGAATACCTTGTGGCCATTG+CGG | 0.613053 | 1:-78344971 | None:intergenic |
| CCAAAGGGTTATAAAGCCGT+CGG | 0.615266 | 1:+78345760 | MsG0180004464.01.T01:CDS |
| TCAGGATGAAAATATACCGT+TGG | 0.617396 | 1:-78346093 | None:intergenic |
| GGTGGTAACTACTATGCCGA+CGG | 0.618472 | 1:-78345776 | None:intergenic |
| ATGCACAAATTCTAACGGAA+AGG | 0.619830 | 1:+78345494 | MsG0180004464.01.T01:CDS |
| CACTATCATCAGCACATCGG+TGG | 0.627838 | 1:-78347262 | None:intergenic |
| AACAAGATCGGTGAACATGT+CGG | 0.653405 | 1:+78346441 | MsG0180004464.01.T01:CDS |
| CCTTTACTGATATTGCAATG+TGG | 0.662421 | 1:+78346358 | MsG0180004464.01.T01:CDS |
| GCAGTCGGCAGGCACGTCAG+TGG | 0.703576 | 1:+78347134 | MsG0180004464.01.T01:intron |
| TCACACTATCATCAGCACAT+CGG | 0.710871 | 1:-78347265 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAGTATTTGATTTCTTTT+TGG | + | Chr1:78345307-78345326 | MsG0180004464.01.T01:intron | 15.0% |
| !!! | ATCTTATTGTCATTAATTTT+TGG | + | Chr1:78345122-78345141 | MsG0180004464.01.T01:intron | 15.0% |
| !! | ATTACTAAGCTTGAAAATTA+AGG | - | Chr1:78345182-78345201 | None:intergenic | 20.0% |
| !! | CACTTAATTACTCATTAATA+TGG | + | Chr1:78345689-78345708 | MsG0180004464.01.T01:CDS | 20.0% |
| !! | CATATTAATGAGTAATTAAG+TGG | - | Chr1:78345691-78345710 | None:intergenic | 20.0% |
| !!! | ATTTGATTTCTTTTTGGTTA+TGG | + | Chr1:78345313-78345332 | MsG0180004464.01.T01:intron | 20.0% |
| !!! | TATGTTTTCTCTTCTATTTT+TGG | + | Chr1:78345042-78345061 | MsG0180004464.01.T01:intron | 20.0% |
| ! | AAAATTCCAAACTTGATATC+TGG | + | Chr1:78347216-78347235 | MsG0180004464.01.T01:CDS | 25.0% |
| ! | AAAGAAAAAAGAATACCTTG+TGG | - | Chr1:78344983-78345002 | None:intergenic | 25.0% |
| ! | ACAGAAAACCTAACAAATAT+TGG | - | Chr1:78346863-78346882 | None:intergenic | 25.0% |
| ! | ATAGTTTATTCATCAAGACA+TGG | + | Chr1:78346593-78346612 | MsG0180004464.01.T01:intron | 25.0% |
| ! | CTGTTGGAAATAATTCAAAA+AGG | - | Chr1:78346892-78346911 | None:intergenic | 25.0% |
| ! | TAAACAAGTTTGAGAAAGTT+TGG | + | Chr1:78345469-78345488 | MsG0180004464.01.T01:CDS | 25.0% |
| ! | TAGTTTATTCATCAAGACAT+GGG | + | Chr1:78346594-78346613 | MsG0180004464.01.T01:intron | 25.0% |
| ! | TCTGAAAACATACCATTATT+AGG | - | Chr1:78347078-78347097 | None:intergenic | 25.0% |
| ! | TGTCTTGATGAATAAACTAT+TGG | - | Chr1:78346593-78346612 | None:intergenic | 25.0% |
| ! | TTACTCATTAATATGGTGTA+TGG | + | Chr1:78345696-78345715 | MsG0180004464.01.T01:CDS | 25.0% |
| !! | ATGATGAATGTGTTTACTTT+TGG | + | Chr1:78345725-78345744 | MsG0180004464.01.T01:CDS | 25.0% |
| !! | TATGTTTTCAGACTTTGATT+TGG | + | Chr1:78347086-78347105 | MsG0180004464.01.T01:intron | 25.0% |
| !! | TCTTTATTTCATATTTGCTG+TGG | + | Chr1:78345232-78345251 | MsG0180004464.01.T01:intron | 25.0% |
| !!! | AATATTTGTTAGGTTTTCTG+TGG | + | Chr1:78346862-78346881 | MsG0180004464.01.T01:intron | 25.0% |
| !!! | AGCGAACAAATTTTGATTTT+TGG | + | Chr1:78347186-78347205 | MsG0180004464.01.T01:CDS | 25.0% |
| !!! | AGTATTTTGTTTGCAGATAT+TGG | + | Chr1:78345152-78345171 | MsG0180004464.01.T01:intron | 25.0% |
| !!! | ATTCGATTTGGAGTTTATTA+AGG | + | Chr1:78346559-78346578 | MsG0180004464.01.T01:intron | 25.0% |
| !!! | GCTGCTAAAAGTAATTTTTT+TGG | + | Chr1:78346689-78346708 | MsG0180004464.01.T01:intron | 25.0% |
| !!! | GTATTTTGTTTGCAGATATT+GGG | + | Chr1:78345153-78345172 | MsG0180004464.01.T01:intron | 25.0% |
| AACATTGAGATGAACAAGAT+CGG | + | Chr1:78346429-78346448 | MsG0180004464.01.T01:CDS | 30.0% | |
| AAGAAAAATTCTTTCCAGGT+TGG | + | Chr1:78345895-78345914 | MsG0180004464.01.T01:intron | 30.0% | |
| ACATGCTTCCAATATTTGTT+AGG | + | Chr1:78346852-78346871 | MsG0180004464.01.T01:intron | 30.0% | |
| AGAACGTGAATCATATACAA+TGG | - | Chr1:78346813-78346832 | None:intergenic | 30.0% | |
| GCGAGAAATAATCTTAAGAA+GGG | + | Chr1:78346281-78346300 | MsG0180004464.01.T01:intron | 30.0% | |
| GGTAAAGCTATAGATTATCA+CGG | + | Chr1:78346192-78346211 | MsG0180004464.01.T01:intron | 30.0% | |
| GTGAATCATATACAATGGTA+GGG | - | Chr1:78346808-78346827 | None:intergenic | 30.0% | |
| GTTCATCAATGACACTTTAA+GGG | - | Chr1:78346412-78346431 | None:intergenic | 30.0% | |
| TCATCTTTCTGTCCTAATAA+TGG | + | Chr1:78347063-78347082 | MsG0180004464.01.T01:intron | 30.0% | |
| TCCAATCATTCTTATGGTAA+AGG | + | Chr1:78347031-78347050 | MsG0180004464.01.T01:intron | 30.0% | |
| TCCTTTACCATAAGAATGAT+TGG | - | Chr1:78347035-78347054 | None:intergenic | 30.0% | |
| TCTCTCTTCTTTCTAATAAG+AGG | + | Chr1:78344841-78344860 | MsG0180004464.01.T01:five_prime_UTR | 30.0% | |
| TGCGAGAAATAATCTTAAGA+AGG | + | Chr1:78346280-78346299 | MsG0180004464.01.T01:intron | 30.0% | |
| TGTTCATCAATGACACTTTA+AGG | - | Chr1:78346413-78346432 | None:intergenic | 30.0% | |
| ! | ATTATTTCTCGCATCTTCAT+CGG | - | Chr1:78346273-78346292 | None:intergenic | 30.0% |
| ! | TTTCACGTTTTATAGACCTT+TGG | + | Chr1:78345524-78345543 | MsG0180004464.01.T01:intron | 30.0% |
| !! | TGTAACTTGTATTTTCCCAA+GGG | - | Chr1:78345445-78345464 | None:intergenic | 30.0% |
| !! | TTGTAACTTGTATTTTCCCA+AGG | - | Chr1:78345446-78345465 | None:intergenic | 30.0% |
| AGATACAAGATTGTTGCTAC+CGG | + | Chr1:78346723-78346742 | MsG0180004464.01.T01:intron | 35.0% | |
| AGTTTGTGAGTGATATACTC+AGG | + | Chr1:78345393-78345412 | MsG0180004464.01.T01:intron | 35.0% | |
| ATGCACAAATTCTAACGGAA+AGG | + | Chr1:78345494-78345513 | MsG0180004464.01.T01:CDS | 35.0% | |
| ATGCTCTTATTGAGCATTAC+GGG | + | Chr1:78346070-78346089 | MsG0180004464.01.T01:CDS | 35.0% | |
| ATTATTTCCAACAGAGCTTC+TGG | + | Chr1:78346898-78346917 | MsG0180004464.01.T01:intron | 35.0% | |
| CACTTGTTCAGAATCAAAGT+AGG | - | Chr1:78345986-78346005 | None:intergenic | 35.0% | |
| CATCGAACTTCTTCAACTTT+CGG | - | Chr1:78345814-78345833 | None:intergenic | 35.0% | |
| CATGCTCTTATTGAGCATTA+CGG | + | Chr1:78346069-78346088 | MsG0180004464.01.T01:CDS | 35.0% | |
| CCACATTGCAATATCAGTAA+AGG | - | Chr1:78346361-78346380 | None:intergenic | 35.0% | |
| CCTTTACTGATATTGCAATG+TGG | + | Chr1:78346358-78346377 | MsG0180004464.01.T01:CDS | 35.0% | |
| CGTGAATCATATACAATGGT+AGG | - | Chr1:78346809-78346828 | None:intergenic | 35.0% | |
| CTACTTTGATTCTGAACAAG+TGG | + | Chr1:78345984-78346003 | MsG0180004464.01.T01:intron | 35.0% | |
| GTCGAAGAAAAATTCTTTCC+AGG | + | Chr1:78345891-78345910 | MsG0180004464.01.T01:intron | 35.0% | |
| GTTCATGTAAAACCAGCATT+AGG | + | Chr1:78346330-78346349 | MsG0180004464.01.T01:intron | 35.0% | |
| TCAGGATGAAAATATACCGT+TGG | - | Chr1:78346096-78346115 | None:intergenic | 35.0% | |
| TCTCATAATTGCAACCAACA+TGG | - | Chr1:78346777-78346796 | None:intergenic | 35.0% | |
| TGAGAAATACATGCCATCAT+CGG | + | Chr1:78346116-78346135 | MsG0180004464.01.T01:CDS | 35.0% | |
| TGGAGATGCACAAATTCTAA+CGG | + | Chr1:78345489-78345508 | MsG0180004464.01.T01:CDS | 35.0% | |
| ! | ATGGGTTAATGCATTCGATT+TGG | + | Chr1:78346547-78346566 | MsG0180004464.01.T01:intron | 35.0% |
| ! | TCTAATAAGAGGTTGCTTTG+TGG | + | Chr1:78344852-78344871 | MsG0180004464.01.T01:five_prime_UTR | 35.0% |
| ! | TGGAGCAATTTTGTATACTG+CGG | + | Chr1:78346158-78346177 | MsG0180004464.01.T01:CDS | 35.0% |
| !! | GATATAATGATGGTGCGTTT+TGG | + | Chr1:78346234-78346253 | MsG0180004464.01.T01:intron | 35.0% |
| !! | TAAGTGGCTTTTTAAGAGCT+GGG | - | Chr1:78345675-78345694 | None:intergenic | 35.0% |
| !! | TTAAGTGGCTTTTTAAGAGC+TGG | - | Chr1:78345676-78345695 | None:intergenic | 35.0% |
| !!! | TGGTTTTTTTGCCCATTCAA+TGG | + | Chr1:78346378-78346397 | MsG0180004464.01.T01:CDS | 35.0% |
| AACAAGATCGGTGAACATGT+CGG | + | Chr1:78346441-78346460 | MsG0180004464.01.T01:CDS | 40.0% | |
| AACTTTCGGTTCATCTGGAT+TGG | - | Chr1:78345800-78345819 | None:intergenic | 40.0% | |
| AAGAGGTGAAGGAAGAGAAA+GGG | - | Chr1:78344951-78344970 | None:intergenic | 40.0% | |
| AATTTACGCATTCACGCAGT+CGG | + | Chr1:78347119-78347138 | MsG0180004464.01.T01:intron | 40.0% | |
| ACCAAGACAGAAAATCCATC+TGG | - | Chr1:78345555-78345574 | None:intergenic | 40.0% | |
| ACTGCGTGAATGCGTAAATT+TGG | - | Chr1:78347119-78347138 | None:intergenic | 40.0% | |
| ATTGTTGCTACCGGGTATTT+GGG | + | Chr1:78346732-78346751 | MsG0180004464.01.T01:intron | 40.0% | |
| CATGTAAAACCAGCATTAGG+AGG | + | Chr1:78346333-78346352 | MsG0180004464.01.T01:intron | 40.0% | |
| CTCGCAAACTTCTGTTAGAT+CGG | - | Chr1:78345845-78345864 | None:intergenic | 40.0% | |
| CTGCGTGAATGCGTAAATTT+GGG | - | Chr1:78347118-78347137 | None:intergenic | 40.0% | |
| GAGAAATGGCTAGTAGCATA+TGG | - | Chr1:78347001-78347020 | None:intergenic | 40.0% | |
| GAGTCATTACAGAACCATGT+TGG | + | Chr1:78346760-78346779 | MsG0180004464.01.T01:intron | 40.0% | |
| GATACAAGATTGTTGCTACC+GGG | + | Chr1:78346724-78346743 | MsG0180004464.01.T01:intron | 40.0% | |
| GATCAGCGTCAAAGAATTCT+GGG | - | Chr1:78344923-78344942 | None:intergenic | 40.0% | |
| GATGGCATGTATTTCTCATC+AGG | - | Chr1:78346114-78346133 | None:intergenic | 40.0% | |
| GCATGAATCTGGTTGAGATT+CGG | - | Chr1:78346054-78346073 | None:intergenic | 40.0% | |
| GCTGGATCCAATCATTCTTA+TGG | + | Chr1:78347025-78347044 | MsG0180004464.01.T01:intron | 40.0% | |
| GGTTGCAATTATGAGAGAGT+GGG | + | Chr1:78346781-78346800 | MsG0180004464.01.T01:intron | 40.0% | |
| GTTGCAATTATGAGAGAGTG+GGG | + | Chr1:78346782-78346801 | MsG0180004464.01.T01:intron | 40.0% | |
| TATACTGCGGGTAATGCAAA+GGG | + | Chr1:78346171-78346190 | MsG0180004464.01.T01:CDS | 40.0% | |
| TCACACTATCATCAGCACAT+CGG | - | Chr1:78347268-78347287 | None:intergenic | 40.0% | |
| TCTGTTGGAACATTCTTCTG+TGG | + | Chr1:78345958-78345977 | MsG0180004464.01.T01:intron | 40.0% | |
| TCTTCAACTTTCGGTTCATC+TGG | - | Chr1:78345805-78345824 | None:intergenic | 40.0% | |
| TGGTTGCAATTATGAGAGAG+TGG | + | Chr1:78346780-78346799 | MsG0180004464.01.T01:intron | 40.0% | |
| TTATCACGGCACAAATTACC+TGG | + | Chr1:78346206-78346225 | MsG0180004464.01.T01:intron | 40.0% | |
| TTGTGAGTGATATACTCAGG+TGG | + | Chr1:78345396-78345415 | MsG0180004464.01.T01:intron | 40.0% | |
| ! | AATCCATCTGGAATCTCCAA+AGG | - | Chr1:78345543-78345562 | None:intergenic | 40.0% |
| ! | AATGACACTTTAAGGGTTGC+AGG | - | Chr1:78346405-78346424 | None:intergenic | 40.0% |
| ! | GCTCAATAAGAGCATGAATC+TGG | - | Chr1:78346065-78346084 | None:intergenic | 40.0% |
| ! | GGAGCAATTTTGTATACTGC+GGG | + | Chr1:78346159-78346178 | MsG0180004464.01.T01:CDS | 40.0% |
| ! | TAAGAGGTTGCTTTGTGGTT+TGG | + | Chr1:78344857-78344876 | MsG0180004464.01.T01:five_prime_UTR | 40.0% |
| ! | TTATAACCCTTTGGAGGGTT+AGG | - | Chr1:78345754-78345773 | None:intergenic | 40.0% |
| !! | AAGTGGCTTTTTAAGAGCTG+GGG | - | Chr1:78345674-78345693 | None:intergenic | 40.0% |
| !! | AATTCTAACGGAAAGGCACT+AGG | + | Chr1:78345501-78345520 | MsG0180004464.01.T01:CDS | 40.0% |
| !! | GTTGCTTTGTGGTTTGGTAA+GGG | + | Chr1:78344863-78344882 | MsG0180004464.01.T01:five_prime_UTR | 40.0% |
| !! | TCCAGATGGATTTTCTGTCT+TGG | + | Chr1:78345551-78345570 | MsG0180004464.01.T01:intron | 40.0% |
| !! | TTGGTGCGAGTGTTTTTGTT+GGG | + | Chr1:78344890-78344909 | MsG0180004464.01.T01:CDS | 40.0% |
| !! | TTTGGTGCGAGTGTTTTTGT+TGG | + | Chr1:78344889-78344908 | MsG0180004464.01.T01:CDS | 40.0% |
| !!! | GTGTCGTGGTTTTTCAAGAA+TGG | + | Chr1:78346138-78346157 | MsG0180004464.01.T01:CDS | 40.0% |
| !!! | GTTTTTTTCTCTGAGCACAG+TGG | + | Chr1:78346518-78346537 | MsG0180004464.01.T01:intron | 40.0% |
| AAAAACCACGACACCGATGA+TGG | - | Chr1:78346132-78346151 | None:intergenic | 45.0% | |
| AAGGAGAAGGACAATTGGCT+AGG | + | Chr1:78346943-78346962 | MsG0180004464.01.T01:intron | 45.0% | |
| ACTAGCCATTTCTCATGAGC+TGG | + | Chr1:78347007-78347026 | MsG0180004464.01.T01:intron | 45.0% | |
| AGAATACCTTGTGGCCATTG+CGG | - | Chr1:78344974-78344993 | None:intergenic | 45.0% | |
| AGCCAATTGTCCTTCTCCTT+TGG | - | Chr1:78346943-78346962 | None:intergenic | 45.0% | |
| AGCTACATACCTCTATCGCA+AGG | - | Chr1:78345929-78345948 | None:intergenic | 45.0% | |
| ATGCTAGCTATCCTCATGCA+GGG | + | Chr1:78346618-78346637 | MsG0180004464.01.T01:intron | 45.0% | |
| CCAAAGGGTTATAAAGCCGT+CGG | + | Chr1:78345760-78345779 | MsG0180004464.01.T01:CDS | 45.0% | |
| CCATCATTATATCCTCCACC+AGG | - | Chr1:78346227-78346246 | None:intergenic | 45.0% | |
| CCTGGTGGAGGATATAATGA+TGG | + | Chr1:78346224-78346243 | MsG0180004464.01.T01:intron | 45.0% | |
| CTTCAGGGATCATCCAAACT+GGG | + | Chr1:78346647-78346666 | MsG0180004464.01.T01:intron | 45.0% | |
| GAAGAGGTGAAGGAAGAGAA+AGG | - | Chr1:78344952-78344971 | None:intergenic | 45.0% | |
| GAAGGGAAACATAGAGAGTG+CGG | + | Chr1:78346298-78346317 | MsG0180004464.01.T01:intron | 45.0% | |
| GAATACACACCTTGCGATAG+AGG | + | Chr1:78345917-78345936 | MsG0180004464.01.T01:intron | 45.0% | |
| GACGGACCAGATATCAAGTT+TGG | - | Chr1:78347225-78347244 | None:intergenic | 45.0% | |
| GATTGTTGCTACCGGGTATT+TGG | + | Chr1:78346731-78346750 | MsG0180004464.01.T01:intron | 45.0% | |
| GGATCAGCGTCAAAGAATTC+TGG | - | Chr1:78344924-78344943 | None:intergenic | 45.0% | |
| GGATCATCCAAACTGGGAAT+AGG | + | Chr1:78346653-78346672 | MsG0180004464.01.T01:intron | 45.0% | |
| GTATACTGCGGGTAATGCAA+AGG | + | Chr1:78346170-78346189 | MsG0180004464.01.T01:CDS | 45.0% | |
| GTCCAAAGGAGAAGGACAAT+TGG | + | Chr1:78346938-78346957 | MsG0180004464.01.T01:intron | 45.0% | |
| TATTGAGCATTACGGGCCAA+CGG | + | Chr1:78346077-78346096 | MsG0180004464.01.T01:CDS | 45.0% | |
| TCCGTCCAATCTAGATCCAA+CGG | + | Chr1:78347239-78347258 | MsG0180004464.01.T01:CDS | 45.0% | |
| TGAAGGAAGAGAAAGGGAAG+TGG | - | Chr1:78344945-78344964 | None:intergenic | 45.0% | |
| TGAGCACAGTGGAGGTAAAT+GGG | + | Chr1:78346529-78346548 | MsG0180004464.01.T01:intron | 45.0% | |
| TGAGTGATATACTCAGGTGG+CGG | + | Chr1:78345399-78345418 | MsG0180004464.01.T01:intron | 45.0% | |
| TGGATCCAGCTCATGAGAAA+TGG | - | Chr1:78347015-78347034 | None:intergenic | 45.0% | |
| TTTCTCGCATCTTCATCGGT+AGG | - | Chr1:78346269-78346288 | None:intergenic | 45.0% | |
| ! | ACGGCTTTATAACCCTTTGG+AGG | - | Chr1:78345760-78345779 | None:intergenic | 45.0% |
| ! | AGACCTTTGGAGATTCCAGA+TGG | + | Chr1:78345537-78345556 | MsG0180004464.01.T01:intron | 45.0% |
| ! | CGATAGAGGTATGTAGCTAG+AGG | + | Chr1:78345931-78345950 | MsG0180004464.01.T01:intron | 45.0% |
| ! | CGGCTTTATAACCCTTTGGA+GGG | - | Chr1:78345759-78345778 | None:intergenic | 45.0% |
| ! | GTAGCTAGAGGTGTATCTGT+TGG | + | Chr1:78345943-78345962 | MsG0180004464.01.T01:intron | 45.0% |
| ! | TTTCGGTTCATCTGGATTGG+TGG | - | Chr1:78345797-78345816 | None:intergenic | 45.0% |
| ! | TTTTTCTCTGAGCACAGTGG+AGG | + | Chr1:78346521-78346540 | MsG0180004464.01.T01:intron | 45.0% |
| !! | GGTTGCTTTGTGGTTTGGTA+AGG | + | Chr1:78344862-78344881 | MsG0180004464.01.T01:five_prime_UTR | 45.0% |
| !! | GTGGTTTGGTAAGGGATGTT+TGG | + | Chr1:78344871-78344890 | MsG0180004464.01.T01:exon | 45.0% |
| AACAGAGCTTCTGGTGAGGA+GGG | + | Chr1:78346907-78346926 | MsG0180004464.01.T01:intron | 50.0% | |
| AAGAGCTGGGGATTCTGACT+CGG | - | Chr1:78345662-78345681 | None:intergenic | 50.0% | |
| AGGGTTGCAGGTCCATTGAA+TGG | - | Chr1:78346393-78346412 | None:intergenic | 50.0% | |
| CACTATCATCAGCACATCGG+TGG | - | Chr1:78347265-78347284 | None:intergenic | 50.0% | |
| CATGCAGGGACTTACCTTCA+GGG | + | Chr1:78346632-78346651 | MsG0180004464.01.T01:intron | 50.0% | |
| CATGCTAGCTATCCTCATGC+AGG | + | Chr1:78346617-78346636 | MsG0180004464.01.T01:intron | 50.0% | |
| CCAGTTTGGATGATCCCTGA+AGG | - | Chr1:78346649-78346668 | None:intergenic | 50.0% | |
| CCCAAGGGATATTCTTCCAC+CGG | - | Chr1:78345430-78345449 | None:intergenic | 50.0% | |
| CCGGTGGAAGAATATCCCTT+GGG | + | Chr1:78345427-78345446 | MsG0180004464.01.T01:CDS | 50.0% | |
| CCTTCAGGGATCATCCAAAC+TGG | + | Chr1:78346646-78346665 | MsG0180004464.01.T01:intron | 50.0% | |
| CGGTGAACATGTCGGTGATT+GGG | + | Chr1:78346449-78346468 | MsG0180004464.01.T01:CDS | 50.0% | |
| CTGAGCACAGTGGAGGTAAA+TGG | + | Chr1:78346528-78346547 | MsG0180004464.01.T01:intron | 50.0% | |
| GACAAGAACTGTCCTCGCAA+CGG | - | Chr1:78345602-78345621 | None:intergenic | 50.0% | |
| GACTCCATCACCCAAATACC+CGG | - | Chr1:78346745-78346764 | None:intergenic | 50.0% | |
| GACTCGGAACAATCAGCTTG+AGG | - | Chr1:78345646-78345665 | None:intergenic | 50.0% | |
| GCAAGGTGTGTATTCCAACC+TGG | - | Chr1:78345912-78345931 | None:intergenic | 50.0% | |
| GCCGTTGGATCTAGATTGGA+CGG | - | Chr1:78347243-78347262 | None:intergenic | 50.0% | |
| GCGAACTCCTATTCCCAGTT+TGG | - | Chr1:78346663-78346682 | None:intergenic | 50.0% | |
| GGGTTGCAGGTCCATTGAAT+GGG | - | Chr1:78346392-78346411 | None:intergenic | 50.0% | |
| GGTGAACATGTCGGTGATTG+GGG | + | Chr1:78346450-78346469 | MsG0180004464.01.T01:CDS | 50.0% | |
| GGTGGTAACTACTATGCCGA+CGG | - | Chr1:78345779-78345798 | None:intergenic | 50.0% | |
| GTAAAGGCTCCTCCTAATGC+TGG | - | Chr1:78346345-78346364 | None:intergenic | 50.0% | |
| TCACGGCACAAATTACCTGG+TGG | + | Chr1:78346209-78346228 | MsG0180004464.01.T01:intron | 50.0% | |
| TCATGCAGGGACTTACCTTC+AGG | + | Chr1:78346631-78346650 | MsG0180004464.01.T01:intron | 50.0% | |
| TCCTTCTCCTTTGGACCAGT+TGG | - | Chr1:78346934-78346953 | None:intergenic | 50.0% | |
| TCGGTGAACATGTCGGTGAT+TGG | + | Chr1:78346448-78346467 | MsG0180004464.01.T01:CDS | 50.0% | |
| TGAAGGTAAGTCCCTGCATG+AGG | - | Chr1:78346632-78346651 | None:intergenic | 50.0% | |
| TGGTTGCCTAACCCTCCAAA+GGG | + | Chr1:78345745-78345764 | MsG0180004464.01.T01:CDS | 50.0% | |
| TTCCAACAGAGCTTCTGGTG+AGG | + | Chr1:78346903-78346922 | MsG0180004464.01.T01:intron | 50.0% | |
| TTCCTTCACCTCTTCCGCAA+TGG | + | Chr1:78344957-78344976 | MsG0180004464.01.T01:CDS | 50.0% | |
| TTGGTTGCCTAACCCTCCAA+AGG | + | Chr1:78345744-78345763 | MsG0180004464.01.T01:CDS | 50.0% | |
| ! | CCGACGGCTTTATAACCCTT+TGG | - | Chr1:78345763-78345782 | None:intergenic | 50.0% |
| ACAGAGCTTCTGGTGAGGAG+GGG | + | Chr1:78346908-78346927 | MsG0180004464.01.T01:intron | 55.0% | |
| CAACAGAGCTTCTGGTGAGG+AGG | + | Chr1:78346906-78346925 | MsG0180004464.01.T01:intron | 55.0% | |
| CCTTCGCGTGAGCAACTTCA+CGG | + | Chr1:78346483-78346502 | MsG0180004464.01.T01:CDS | 55.0% | |
| CGAGGACAGTTCTTGTCGCT+CGG | + | Chr1:78345605-78345624 | MsG0180004464.01.T01:intron | 55.0% | |
| CGGCACAAATTACCTGGTGG+AGG | + | Chr1:78346212-78346231 | MsG0180004464.01.T01:intron | 55.0% | |
| CGTGAAGTTGCTCACGCGAA+GGG | - | Chr1:78346485-78346504 | None:intergenic | 55.0% | |
| CTCCTCACCAGAAGCTCTGT+TGG | - | Chr1:78346908-78346927 | None:intergenic | 55.0% | |
| GAGCAACTTCACGGAGAGCT+TGG | + | Chr1:78346492-78346511 | MsG0180004464.01.T01:CDS | 55.0% | |
| GAGGACAGTTCTTGTCGCTC+GGG | + | Chr1:78345606-78345625 | MsG0180004464.01.T01:intron | 55.0% | |
| GCAACGGCTGATCATTGGAG+TGG | - | Chr1:78345586-78345605 | None:intergenic | 55.0% | |
| GCCAACTGGTCCAAAGGAGA+AGG | + | Chr1:78346930-78346949 | MsG0180004464.01.T01:intron | 55.0% | |
| GCCGGTGGAAGAATATCCCT+TGG | + | Chr1:78345426-78345445 | MsG0180004464.01.T01:CDS | 55.0% | |
| GCTACCGGGTATTTGGGTGA+TGG | + | Chr1:78346738-78346757 | MsG0180004464.01.T01:intron | 55.0% | |
| GGTGGCCGTTGGATCTAGAT+TGG | - | Chr1:78347247-78347266 | None:intergenic | 55.0% | |
| TCCAATGATCAGCCGTTGCG+AGG | + | Chr1:78345587-78345606 | MsG0180004464.01.T01:intron | 55.0% | |
| TCCTCGCAACGGCTGATCAT+TGG | - | Chr1:78345591-78345610 | None:intergenic | 55.0% | |
| !! | ACATGCCATCATCGGTGTCG+TGG | + | Chr1:78346124-78346143 | MsG0180004464.01.T01:CDS | 55.0% |
| !! | TACTCAGGTGGCGGTTTTGC+CGG | + | Chr1:78345408-78345427 | MsG0180004464.01.T01:intron | 55.0% |
| ATCAGCACATCGGTGGCCGT+TGG | - | Chr1:78347258-78347277 | None:intergenic | 60.0% | |
| CCGTGAAGTTGCTCACGCGA+AGG | - | Chr1:78346486-78346505 | None:intergenic | 60.0% | |
| CCTCTTCCGCAATGGCCACA+AGG | + | Chr1:78344965-78344984 | MsG0180004464.01.T01:CDS | 60.0% | |
| CCTTGTGGCCATTGCGGAAG+AGG | - | Chr1:78344968-78344987 | None:intergenic | 60.0% | |
| GCAGGCACGTCAGTGGTCAT+TGG | + | Chr1:78347141-78347160 | MsG0180004464.01.T01:intron | 60.0% | |
| GGCCATTGCGGAAGAGGTGA+AGG | - | Chr1:78344962-78344981 | None:intergenic | 60.0% | |
| TACGCATTCACGCAGTCGGC+AGG | + | Chr1:78347123-78347142 | MsG0180004464.01.T01:intron | 60.0% | |
| GGAGGGGCCAACTGGTCCAA+AGG | + | Chr1:78346924-78346943 | MsG0180004464.01.T01:intron | 65.0% | |
| TCTGGTGAGGAGGGGCCAAC+TGG | + | Chr1:78346916-78346935 | MsG0180004464.01.T01:intron | 65.0% | |
| !! | TCAGGTGGCGGTTTTGCCGG+TGG | + | Chr1:78345411-78345430 | MsG0180004464.01.T01:intron | 65.0% |
| GCAGTCGGCAGGCACGTCAG+TGG | + | Chr1:78347134-78347153 | MsG0180004464.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 78344829 | 78347287 | 78344829 | ID=MsG0180004464.01;Name=MsG0180004464.01 |
| Chr1 | mRNA | 78344829 | 78347287 | 78344829 | ID=MsG0180004464.01.T01;Parent=MsG0180004464.01;Name=MsG0180004464.01.T01;_AED=0.47;_eAED=0.54;_QI=57|0|0.14|1|0.33|0.57|7|0|295 |
| Chr1 | exon | 78344829 | 78344986 | 78344829 | ID=MsG0180004464.01.T01:exon:45353;Parent=MsG0180004464.01.T01 |
| Chr1 | exon | 78345168 | 78345196 | 78345168 | ID=MsG0180004464.01.T01:exon:45354;Parent=MsG0180004464.01.T01 |
| Chr1 | exon | 78345415 | 78345522 | 78345415 | ID=MsG0180004464.01.T01:exon:45355;Parent=MsG0180004464.01.T01 |
| Chr1 | exon | 78345614 | 78345825 | 78345614 | ID=MsG0180004464.01.T01:exon:45356;Parent=MsG0180004464.01.T01 |
| Chr1 | exon | 78346066 | 78346192 | 78346066 | ID=MsG0180004464.01.T01:exon:45357;Parent=MsG0180004464.01.T01 |
| Chr1 | exon | 78346346 | 78346513 | 78346346 | ID=MsG0180004464.01.T01:exon:45358;Parent=MsG0180004464.01.T01 |
| Chr1 | exon | 78347145 | 78347287 | 78347145 | ID=MsG0180004464.01.T01:exon:45359;Parent=MsG0180004464.01.T01 |
| Chr1 | five_prime_UTR | 78344829 | 78344885 | 78344829 | ID=MsG0180004464.01.T01:five_prime_utr;Parent=MsG0180004464.01.T01 |
| Chr1 | CDS | 78344886 | 78344986 | 78344886 | ID=MsG0180004464.01.T01:cds;Parent=MsG0180004464.01.T01 |
| Chr1 | CDS | 78345168 | 78345196 | 78345168 | ID=MsG0180004464.01.T01:cds;Parent=MsG0180004464.01.T01 |
| Chr1 | CDS | 78345415 | 78345522 | 78345415 | ID=MsG0180004464.01.T01:cds;Parent=MsG0180004464.01.T01 |
| Chr1 | CDS | 78345614 | 78345825 | 78345614 | ID=MsG0180004464.01.T01:cds;Parent=MsG0180004464.01.T01 |
| Chr1 | CDS | 78346066 | 78346192 | 78346066 | ID=MsG0180004464.01.T01:cds;Parent=MsG0180004464.01.T01 |
| Chr1 | CDS | 78346346 | 78346513 | 78346346 | ID=MsG0180004464.01.T01:cds;Parent=MsG0180004464.01.T01 |
| Chr1 | CDS | 78347145 | 78347287 | 78347145 | ID=MsG0180004464.01.T01:cds;Parent=MsG0180004464.01.T01 |
| Gene Sequence |
| Protein sequence |
