AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019329.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019329.01.T01 MTR_4g029530 76.108 406 21 5 1 358 1 378 0.0 589
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019329.01.T01 AT5G61530 55.164 397 109 6 1 358 1 367 4.75e-143 410
MsG0480019329.01.T01 AT5G61530 55.164 397 109 6 1 358 1 367 4.75e-143 410
MsG0480019329.01.T01 AT5G61530 53.941 406 109 6 1 358 1 376 6.48e-142 407
MsG0480019329.01.T01 AT5G61530 57.660 359 102 4 48 358 20 376 2.80e-138 398
MsG0480019329.01.T01 AT5G61530 52.941 289 74 4 1 255 1 261 5.55e-95 285

Find 105 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTGGATATATTGGATT+TGG 0.230100 4:-18556279 MsG0480019329.01.T01:three_prime_UTR
TCGAAATACCTTGGTTGTAT+AGG 0.242849 4:+18559511 None:intergenic
CAGTATTGACGATAAATTTC+AGG 0.256557 4:+18557539 None:intergenic
CAAATCCAATATATCCAAAT+TGG 0.269962 4:+18556280 None:intergenic
TGCATCTTCTCTTATTCCTT+TGG 0.272162 4:-18556473 MsG0480019329.01.T01:CDS
AAGTCGGTGGGCACGTCTTC+AGG 0.278314 4:-18560520 MsG0480019329.01.T01:CDS
CGAAATACCTTGGTTGTATA+GGG 0.288605 4:+18559512 None:intergenic
GATATACCTTTCACTAAAAC+TGG 0.308224 4:+18556177 None:intergenic
TAAATCTGAAGGGGACAAAA+AGG 0.312157 4:-18559553 MsG0480019329.01.T01:CDS
CAAGTAGTTGAACCAGGTTC+TGG 0.316941 4:+18557476 None:intergenic
ATTCTTTGACTTGGATGTAT+TGG 0.329262 4:-18556320 MsG0480019329.01.T01:three_prime_UTR
TGACTTGGATGTATTGGATT+TGG 0.341216 4:-18556314 MsG0480019329.01.T01:three_prime_UTR
CTGAAATTTATCGTCAATAC+TGG 0.352388 4:-18557538 MsG0480019329.01.T01:CDS
ACAAGAGCTGCTACATCAAC+TGG 0.363894 4:+18559378 None:intergenic
TGTTTATATAAATTTAATGT+AGG 0.363973 4:-18560654 MsG0480019329.01.T01:CDS
TCCAATGTGGTCAGTGGCTC+AGG 0.371441 4:+18559333 None:intergenic
CAGAACCTGGTTCAACTACT+TGG 0.372001 4:-18557475 MsG0480019329.01.T01:CDS
TCAACTGGATTTGAGCCTTC+TGG 0.372040 4:+18559393 None:intergenic
TTCTGGATTCAAGCTCTGTT+TGG 0.372743 4:+18557493 None:intergenic
CCTTTATTGATTCTTTGACT+TGG 0.375766 4:-18556329 MsG0480019329.01.T01:three_prime_UTR
GAATCAGCGGGAACGTTTGT+TGG 0.388056 4:-18560609 MsG0480019329.01.T01:CDS
CCACATTACCTCTTCAACCT+TGG 0.389178 4:+18560383 None:intergenic
TCCATGAGAAAATACTTAAG+AGG 0.404061 4:-18559270 MsG0480019329.01.T01:CDS
TCTCTTATTCCTTTGGATGA+AGG 0.409750 4:-18556466 MsG0480019329.01.T01:CDS
ACCTGTTATCATGTGGCAAA+AGG 0.410592 4:-18557570 MsG0480019329.01.T01:CDS
CATTGTTGACTTTGTTCAGA+TGG 0.415618 4:-18557621 MsG0480019329.01.T01:CDS
GACAAAAGAGAAGGTGGTTG+TGG 0.420557 4:-18560412 MsG0480019329.01.T01:CDS
GTTTATATAAATTTAATGTA+GGG 0.421698 4:-18560653 MsG0480019329.01.T01:CDS
CCAAGTCAAAGAATCAATAA+AGG 0.427250 4:+18556329 None:intergenic
GCTGAAGTGGCGGGAAAAGT+TGG 0.432879 4:-18560555 MsG0480019329.01.T01:CDS
TATAGCAGCTATGTTTATGC+TGG 0.434797 4:-18556221 MsG0480019329.01.T01:three_prime_UTR
ACTTTGTTCAGATGGATTCT+CGG 0.437283 4:-18557613 MsG0480019329.01.T01:CDS
TTCCTGAGGAGAGGTTTGTC+AGG 0.437700 4:-18560435 MsG0480019329.01.T01:CDS
ACAAAAGAGAAGGTGGTTGT+GGG 0.439320 4:-18560411 MsG0480019329.01.T01:CDS
TCGATTGCACCGAAGTCAAC+TGG 0.452453 4:+18556439 None:intergenic
TCGGAGCCTTGCAATGGAAA+TGG 0.458451 4:-18557594 MsG0480019329.01.T01:CDS
CTGAAGTGGCGGGAAAAGTT+GGG 0.470673 4:-18560554 MsG0480019329.01.T01:CDS
AATGATCGTCACGTCCAGAT+TGG 0.476710 4:+18556245 None:intergenic
TGTACAGGATCGAATGATAT+CGG 0.477600 4:-18560478 MsG0480019329.01.T01:CDS
TGGGGAAACATGTTGGGTAC+TGG 0.483946 4:-18556201 MsG0480019329.01.T01:three_prime_UTR
CAGATGCCAACGAGACAGTC+TGG 0.491595 4:-18556375 MsG0480019329.01.T01:CDS
CTCACCTCAGTGGCAAGATA+AGG 0.494138 4:-18560763 MsG0480019329.01.T01:CDS
ATAGCAGCTATGTTTATGCT+GGG 0.496784 4:-18556220 MsG0480019329.01.T01:three_prime_UTR
ATACGGTAGTAATCAAGAAA+AGG 0.503320 4:+18560687 None:intergenic
CCTGTTATCATGTGGCAAAA+GGG 0.504737 4:-18557569 MsG0480019329.01.T01:CDS
AGACATTGAAAGATGGCAAA+AGG 0.507271 4:-18560173 MsG0480019329.01.T01:intron
GGATTCAAGCTCTGTTTGGA+AGG 0.507953 4:+18557497 None:intergenic
AGCGGGAACGTTTGTTGGCG+AGG 0.509352 4:-18560604 MsG0480019329.01.T01:CDS
TCCCTGACAAACCTCTCCTC+AGG 0.510117 4:+18560433 None:intergenic
GTCTACAAGACATGCTGTAC+AGG 0.511268 4:-18560493 MsG0480019329.01.T01:CDS
ATATCGGCTGCTGCTACGAC+TGG 0.522526 4:-18560462 MsG0480019329.01.T01:CDS
TTTATATAAATTTAATGTAG+GGG 0.542733 4:-18560652 MsG0480019329.01.T01:CDS
GGTCAAGCTTAAAGAAGCTA+AGG 0.542829 4:-18560631 MsG0480019329.01.T01:CDS
TCATTTCCAGACTGTCTCGT+TGG 0.544319 4:+18556369 None:intergenic
TTATGCTGGGGAAACATGTT+GGG 0.545272 4:-18556207 MsG0480019329.01.T01:three_prime_UTR
TCATGATTGCATATATATGA+AGG 0.549002 4:-18555977 MsG0480019329.01.T01:three_prime_UTR
CAGAGCTTGAATCCAGAACC+TGG 0.554738 4:-18557488 MsG0480019329.01.T01:CDS
AATAAGAGAAGATGCATCCA+TGG 0.561442 4:+18556480 None:intergenic
ACTACTTGGGACATGCTCGC+TGG 0.561653 4:-18557461 MsG0480019329.01.T01:intron
GAGCTTTATAATGAGATCAA+AGG 0.565606 4:-18559312 MsG0480019329.01.T01:CDS
AAAGAGTAATGTAGCTGAAG+TGG 0.566162 4:-18560568 MsG0480019329.01.T01:CDS
TTTATGCTGGGGAAACATGT+TGG 0.566531 4:-18556208 MsG0480019329.01.T01:three_prime_UTR
TCAACTGCTGCAGTGCCAGA+AGG 0.567311 4:-18559408 MsG0480019329.01.T01:CDS
CAAAAGAGAAGGTGGTTGTG+GGG 0.567728 4:-18560410 MsG0480019329.01.T01:CDS
ATAAACAAACAAAGAGCATA+CGG 0.568046 4:+18560670 None:intergenic
AAGTGCACAGATTTAGTGAA+AGG 0.569983 4:+18560714 None:intergenic
CAGGTGCCATTTCCATTGCA+AGG 0.570190 4:+18557588 None:intergenic
AAAGAAGCTAAGGAATCAGC+GGG 0.570777 4:-18560621 MsG0480019329.01.T01:CDS
ACTGGCATGCCTTCATCCAA+AGG 0.571508 4:+18556457 None:intergenic
TCCTGAGCCACTGACCACAT+TGG 0.580818 4:-18559334 MsG0480019329.01.T01:CDS
GGATTCTCGGAGCCTTGCAA+TGG 0.586088 4:-18557600 MsG0480019329.01.T01:CDS
CAGGGAGTTGCTAAAACTGA+CGG 0.591352 4:-18560066 MsG0480019329.01.T01:intron
AGAACCTGGTTCAACTACTT+GGG 0.591658 4:-18557474 MsG0480019329.01.T01:CDS
AGTAATGTAGCTGAAGTGGC+GGG 0.592358 4:-18560564 MsG0480019329.01.T01:CDS
GAAGGCATGCCAGTTGACTT+CGG 0.597065 4:-18556448 MsG0480019329.01.T01:CDS
TCCTGAGGAGAGGTTTGTCA+GGG 0.599140 4:-18560434 MsG0480019329.01.T01:CDS
CACTGAGGTGAGATTACAGA+AGG 0.600335 4:+18560774 None:intergenic
TCTTGACAGACATTGAAAGA+TGG 0.604203 4:-18560180 MsG0480019329.01.T01:CDS
GTCAGGGACAAAAGAGAAGG+TGG 0.606025 4:-18560418 MsG0480019329.01.T01:CDS
GGACGGTATTCAAAAGTCGG+TGG 0.609947 4:-18560533 MsG0480019329.01.T01:CDS
TTAGTGATGAGAGTTTCTGC+AGG 0.619157 4:+18556074 None:intergenic
CTACGACTGGTGCATTCCTG+AGG 0.619975 4:-18560449 MsG0480019329.01.T01:CDS
GGTGGTTGTGGGGAAATCCA+AGG 0.621706 4:-18560400 MsG0480019329.01.T01:CDS
TAAAGCTCCAATGTGGTCAG+TGG 0.623875 4:+18559327 None:intergenic
TTGGGACGGTATTCAAAAGT+CGG 0.624690 4:-18560536 MsG0480019329.01.T01:CDS
GACGGTATTCAAAAGTCGGT+GGG 0.626060 4:-18560532 MsG0480019329.01.T01:CDS
GAGTAATGTAGCTGAAGTGG+CGG 0.626295 4:-18560565 MsG0480019329.01.T01:CDS
ATGTCCCAAGTAGTTGAACC+AGG 0.630070 4:+18557470 None:intergenic
GGGGAAATCCAAGGTTGAAG+AGG 0.631245 4:-18560391 MsG0480019329.01.T01:intron
ACTGGTGCATTCCTGAGGAG+AGG 0.636539 4:-18560444 MsG0480019329.01.T01:CDS
TGCAGACGAGAGTGAAGCCA+TGG 0.637614 4:-18556497 MsG0480019329.01.T01:intron
TGTACAGCATGTCTTGTAGA+CGG 0.639114 4:+18560495 None:intergenic
TTTGTCAGGGACAAAAGAGA+AGG 0.643608 4:-18560421 MsG0480019329.01.T01:CDS
ATGTGGTCAGTGGCTCAGGA+AGG 0.645915 4:+18559337 None:intergenic
TAAAGAAGCTAAGGAATCAG+CGG 0.649713 4:-18560622 MsG0480019329.01.T01:CDS
GTTTGTTGGCGAGGTCACAA+AGG 0.656145 4:-18560595 MsG0480019329.01.T01:CDS
CTCGCCTTATCTTGCCACTG+AGG 0.661591 4:+18560759 None:intergenic
TAGCAGCTATGTTTATGCTG+GGG 0.665487 4:-18556219 MsG0480019329.01.T01:three_prime_UTR
CAGTGGCAAGATAAGGCGAG+TGG 0.678118 4:-18560756 MsG0480019329.01.T01:CDS
AGTGGCGGGAAAAGTTGGGA+CGG 0.689419 4:-18560550 MsG0480019329.01.T01:CDS
GATTTAGTGAAAGGTACCTG+AGG 0.695963 4:+18560723 None:intergenic
CTCATTATAAAGCTCCAATG+TGG 0.698623 4:+18559320 None:intergenic
TTGGTTGCCCTATACAACCA+AGG 0.705842 4:-18559519 MsG0480019329.01.T01:intron
CTTCTGTAATCTCACCTCAG+TGG 0.711148 4:-18560773 MsG0480019329.01.T01:CDS
AAATGGCACCTGTTATCATG+TGG 0.743338 4:-18557577 MsG0480019329.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAAATTCAAAAGT+GGG - Chr4:18559771-18559790 MsG0480019329.01.T01:intron 10.0%
!! GTTTATATAAATTTAATGTA+GGG - Chr4:18556101-18556120 MsG0480019329.01.T01:three_prime_UTR 10.0%
!! TGTTTATATAAATTTAATGT+AGG - Chr4:18556100-18556119 MsG0480019329.01.T01:three_prime_UTR 10.0%
!! TTACTATTTATAAATTTGTA+TGG - Chr4:18557668-18557687 MsG0480019329.01.T01:intron 10.0%
!! TTTATATAAATTTAATGTAG+GGG - Chr4:18556102-18556121 MsG0480019329.01.T01:three_prime_UTR 10.0%
!!! GTCTTTTAATATTTTATTTT+TGG - Chr4:18560611-18560630 MsG0480019329.01.T01:CDS 10.0%
!! AAACAAGAAAATAAGATATA+TGG + Chr4:18560231-18560250 None:intergenic 15.0%
!! AACTATAAAAGAAACTATTA+AGG - Chr4:18558609-18558628 MsG0480019329.01.T01:intron 15.0%
!! AATCAAACAACAAAATAATA+AGG + Chr4:18558261-18558280 None:intergenic 15.0%
!! ATTATATCATTAAAGTTAGA+CGG - Chr4:18557288-18557307 MsG0480019329.01.T01:intron 15.0%
!! CAATTATAAAAATTCAAAAG+TGG - Chr4:18559770-18559789 MsG0480019329.01.T01:intron 15.0%
!! TTACATAAAATTCATTATGT+AGG - Chr4:18559347-18559366 MsG0480019329.01.T01:CDS 15.0%
!!! AGTAATTAATTTTTTTTGGT+TGG - Chr4:18557754-18557773 MsG0480019329.01.T01:intron 15.0%
!! AAATATAATTAGTGCTAACT+TGG + Chr4:18556446-18556465 None:intergenic 20.0%
!! ACTTTCTTCTAAATTTCTAA+TGG - Chr4:18558782-18558801 MsG0480019329.01.T01:intron 20.0%
!! AGAAAATTAAGTCTACAAAA+CGG + Chr4:18557948-18557967 None:intergenic 20.0%
!! ATGTAAATAATCACATGTTT+AGG + Chr4:18559333-18559352 None:intergenic 20.0%
!! ATTTCTATATTGACAATTTG+AGG - Chr4:18559483-18559502 MsG0480019329.01.T01:intron 20.0%
!! CTATTTATAAATTTGTATGG+TGG - Chr4:18557671-18557690 MsG0480019329.01.T01:intron 20.0%
!! TAGTCAATATAGAAATATTC+TGG - Chr4:18559938-18559957 MsG0480019329.01.T01:intron 20.0%
!! TTAATTACTTAATTGCGTTT+AGG + Chr4:18557743-18557762 None:intergenic 20.0%
!! TTTAACAAAATTGGATTTGA+CGG - Chr4:18557908-18557927 MsG0480019329.01.T01:intron 20.0%
!!! AAAGGTATATCTTCTTTTTT+AGG - Chr4:18560589-18560608 MsG0480019329.01.T01:CDS 20.0%
!!! ATATCTTTTTAAATCTGAAG+GGG - Chr4:18557192-18557211 MsG0480019329.01.T01:intron 20.0%
!!! ATTCAATTTACTTTTGACAT+GGG + Chr4:18557794-18557813 None:intergenic 20.0%
!!! ATTTTGTTTTAACTTCTTGA+AGG - Chr4:18558863-18558882 MsG0480019329.01.T01:intron 20.0%
!!! CATATCTTTTTAAATCTGAA+GGG - Chr4:18557191-18557210 MsG0480019329.01.T01:intron 20.0%
!!! CATTTTTTCTTTGTTTTAGT+TGG - Chr4:18556496-18556515 MsG0480019329.01.T01:intron 20.0%
!!! CTCTTTAAATGTTTTCTATT+GGG + Chr4:18559583-18559602 None:intergenic 20.0%
!!! CTTATACTATTTGAAATGTA+GGG - Chr4:18558341-18558360 MsG0480019329.01.T01:intron 20.0%
!!! GTTTCTTTTATAGTTTTTCT+AGG + Chr4:18558604-18558623 None:intergenic 20.0%
!!! TCTCTTTAAATGTTTTCTAT+TGG + Chr4:18559584-18559603 None:intergenic 20.0%
!!! TCTTATACTATTTGAAATGT+AGG - Chr4:18558340-18558359 MsG0480019329.01.T01:intron 20.0%
!!! TTGATTTGTTTTCATATGTT+AGG - Chr4:18557878-18557897 MsG0480019329.01.T01:intron 20.0%
!!! TTTTTCAAATGTTTTACAAG+TGG + Chr4:18558318-18558337 None:intergenic 20.0%
!!! TTTTTTAGAATGATCTATAC+TGG + Chr4:18556643-18556662 None:intergenic 20.0%
! AAAGAATAATCGAAATACCT+TGG + Chr4:18557255-18557274 None:intergenic 25.0%
! AAATGACAACATTAGAGAAT+TGG - Chr4:18558443-18558462 MsG0480019329.01.T01:intron 25.0%
! AATGACAACATTAGAGAATT+GGG - Chr4:18558444-18558463 MsG0480019329.01.T01:intron 25.0%
! ACAAAGTTTGATTGTTCTTA+AGG + Chr4:18559066-18559085 None:intergenic 25.0%
! ACAAGTGAGTATTTATTTGA+CGG - Chr4:18556736-18556755 MsG0480019329.01.T01:intron 25.0%
! ACTCTAATCACAAAATATTC+TGG - Chr4:18560114-18560133 MsG0480019329.01.T01:intron 25.0%
! ACTTCTATTGAACTAAAACT+TGG - Chr4:18560174-18560193 MsG0480019329.01.T01:CDS 25.0%
! AGAAGAAAGTCTAATAAACT+AGG + Chr4:18558772-18558791 None:intergenic 25.0%
! AGTATTTATTTGACGGAAAT+GGG - Chr4:18556743-18556762 MsG0480019329.01.T01:intron 25.0%
! CAAATCCAATATATCCAAAT+TGG + Chr4:18560477-18560496 None:intergenic 25.0%
! CAATTTGGATATATTGGATT+TGG - Chr4:18560475-18560494 MsG0480019329.01.T01:CDS 25.0%
! CCTTCAGATTTAAAAAGATA+TGG + Chr4:18557193-18557212 None:intergenic 25.0%
! GGTCATGTATTTAACAAAAT+TGG - Chr4:18557899-18557918 MsG0480019329.01.T01:intron 25.0%
! TATGAAGTCATACATATGAT+TGG - Chr4:18558388-18558407 MsG0480019329.01.T01:intron 25.0%
! TCATGATTGCATATATATGA+AGG - Chr4:18560777-18560796 MsG0480019329.01.T01:CDS 25.0%
!! AAAAAAGTTAGTTTAACTGC+TGG - Chr4:18560144-18560163 MsG0480019329.01.T01:intron 25.0%
!! AAAAGTCTTTTCTCATTACT+TGG + Chr4:18559680-18559699 None:intergenic 25.0%
!! ATAAACAAACAAAGAGCATA+CGG + Chr4:18556087-18556106 None:intergenic 25.0%
!! CCATATCTTTTTAAATCTGA+AGG - Chr4:18557190-18557209 MsG0480019329.01.T01:intron 25.0%
!! GTTTTCCAATTTGGATATAT+TGG - Chr4:18560469-18560488 MsG0480019329.01.T01:CDS 25.0%
!! TATACCATCTTTTCTACTAT+AGG + Chr4:18558476-18558495 None:intergenic 25.0%
!! TCACTAATGTACTTTTATTG+TGG - Chr4:18560696-18560715 MsG0480019329.01.T01:CDS 25.0%
!! TGGAATAATGTTTTCCAATT+TGG - Chr4:18560460-18560479 MsG0480019329.01.T01:CDS 25.0%
!! TGGTTTTTAATAGAACACTA+TGG - Chr4:18558662-18558681 MsG0480019329.01.T01:intron 25.0%
!! TTTTCTCATGGAATATATGT+TGG + Chr4:18557476-18557495 None:intergenic 25.0%
!!! AAAAAAAACCACTTTTTGGA+AGG + Chr4:18559621-18559640 None:intergenic 25.0%
!!! AAAAAAACCACTTTTTGGAA+GGG + Chr4:18559620-18559639 None:intergenic 25.0%
!!! AATTTCTAATGGTCTTATTG+TGG - Chr4:18558793-18558812 MsG0480019329.01.T01:intron 25.0%
!!! ATATTTTATTTTTGGGTTGC+AGG - Chr4:18560619-18560638 MsG0480019329.01.T01:CDS 25.0%
!!! ATGTTGTTTTCTCTAATTTG+AGG - Chr4:18557996-18558015 MsG0480019329.01.T01:intron 25.0%
!!! ATTTCTAATGGTCTTATTGT+GGG - Chr4:18558794-18558813 MsG0480019329.01.T01:intron 25.0%
!!! GATTCAATTTACTTTTGACA+TGG + Chr4:18557795-18557814 None:intergenic 25.0%
!!! TAGGAAAAAAAACCACTTTT+TGG + Chr4:18559625-18559644 None:intergenic 25.0%
!!! TATTTCCCTTTTTTTTTGCA+GGG - Chr4:18556670-18556689 MsG0480019329.01.T01:intron 25.0%
!!! TATTTTATTTTTGGGTTGCA+GGG - Chr4:18560620-18560639 MsG0480019329.01.T01:CDS 25.0%
!!! TGTTGTTTTCTCTAATTTGA+GGG - Chr4:18557997-18558016 MsG0480019329.01.T01:intron 25.0%
!!! TTGTGGTGTGATATTTTTTT+TGG - Chr4:18560713-18560732 MsG0480019329.01.T01:CDS 25.0%
AAAAGCTACCTGAAACTATA+AGG + Chr4:18557055-18557074 None:intergenic 30.0%
AAAATTGGATTTGACGGTTA+TGG - Chr4:18557914-18557933 MsG0480019329.01.T01:intron 30.0%
AAAGAAATGAGCAATTCAGA+TGG + Chr4:18557850-18557869 None:intergenic 30.0%
AAATTCAAAAGTGGGATATC+AGG - Chr4:18559779-18559798 MsG0480019329.01.T01:intron 30.0%
AAGAAACATAGACTGATACA+TGG + Chr4:18557098-18557117 None:intergenic 30.0%
AATTCAAAAGTGGGATATCA+GGG - Chr4:18559780-18559799 MsG0480019329.01.T01:intron 30.0%
ACAAAGCAAGTTAAACAACT+CGG + Chr4:18558963-18558982 None:intergenic 30.0%
ACATAGATAACAAAAGACTC+TGG + Chr4:18556788-18556807 None:intergenic 30.0%
AGAACCTATAGTAGAAAAGA+TGG - Chr4:18558469-18558488 MsG0480019329.01.T01:intron 30.0%
AGTCATAATATATGAGGTAG+AGG - Chr4:18559400-18559419 MsG0480019329.01.T01:CDS 30.0%
AGTGAGTGTGAATAATTGTT+TGG - Chr4:18557603-18557622 MsG0480019329.01.T01:CDS 30.0%
ATAAGAGAGTGAAGAGATTT+GGG + Chr4:18557707-18557726 None:intergenic 30.0%
ATACGGTAGTAATCAAGAAA+AGG + Chr4:18556070-18556089 None:intergenic 30.0%
ATATTGACAATTTGAGGAGA+AGG - Chr4:18559489-18559508 MsG0480019329.01.T01:intron 30.0%
ATCATATGGAGGATAACTTT+GGG - Chr4:18559537-18559556 MsG0480019329.01.T01:CDS 30.0%
ATGACAACATTAGAGAATTG+GGG - Chr4:18558445-18558464 MsG0480019329.01.T01:intron 30.0%
CATATGATCAGATCCTATAT+GGG + Chr4:18559525-18559544 None:intergenic 30.0%
CCAAGTCAAAGAATCAATAA+AGG + Chr4:18560428-18560447 None:intergenic 30.0%
CCACAGTTGTAATTATATGT+AGG - Chr4:18557157-18557176 MsG0480019329.01.T01:intron 30.0%
CCTACATATAATTACAACTG+TGG + Chr4:18557160-18557179 None:intergenic 30.0%
CCTCATATATTATGACTTAG+AGG + Chr4:18559397-18559416 None:intergenic 30.0%
CCTCTAAGTCATAATATATG+AGG - Chr4:18559394-18559413 MsG0480019329.01.T01:CDS 30.0%
CTCCTTACTACATAATTCAT+AGG + Chr4:18558536-18558555 None:intergenic 30.0%
CTGAAATTTATCGTCAATAC+TGG - Chr4:18559216-18559235 MsG0480019329.01.T01:intron 30.0%
GAATGTTGTGAAGAATATGA+AGG + Chr4:18558218-18558237 None:intergenic 30.0%
GACCTATGAATTATGTAGTA+AGG - Chr4:18558531-18558550 MsG0480019329.01.T01:intron 30.0%
GAGAGAAAAAGACTAATAGA+AGG + Chr4:18558917-18558936 None:intergenic 30.0%
GAGTATTTATTTGACGGAAA+TGG - Chr4:18556742-18556761 MsG0480019329.01.T01:intron 30.0%
GATATACCTTTCACTAAAAC+TGG + Chr4:18560580-18560599 None:intergenic 30.0%
GATCAATTGAAGCTATCATT+AGG + Chr4:18559644-18559663 None:intergenic 30.0%
GGTATTTCGATTATTCTTTC+AGG - Chr4:18557256-18557275 MsG0480019329.01.T01:intron 30.0%
GTCTCATTATCATTTGTTTC+AGG - Chr4:18556518-18556537 MsG0480019329.01.T01:intron 30.0%
GTTAGATTCTACATGCAAAT+TGG - Chr4:18559091-18559110 MsG0480019329.01.T01:intron 30.0%
TACTCACTTGTTCAATTATG+TGG + Chr4:18556727-18556746 None:intergenic 30.0%
TACTTAATTGCGTTTAGGAA+AGG + Chr4:18557738-18557757 None:intergenic 30.0%
TATAAGAGAGTGAAGAGATT+TGG + Chr4:18557708-18557727 None:intergenic 30.0%
TCATTATCATTTGTTTCAGG+TGG - Chr4:18556521-18556540 MsG0480019329.01.T01:intron 30.0%
TCCATGAGAAAATACTTAAG+AGG - Chr4:18557484-18557503 MsG0480019329.01.T01:CDS 30.0%
TCTTGTGTAAAAACAAGGTA+CGG - Chr4:18558093-18558112 MsG0480019329.01.T01:intron 30.0%
TGTTTGATTAGAGACTTGAA+CGG - Chr4:18558272-18558291 MsG0480019329.01.T01:intron 30.0%
TTGAACAGTTAAACTTCAGT+AGG + Chr4:18559847-18559866 None:intergenic 30.0%
! AATAATTGTTTGGTGGAAGT+GGG - Chr4:18557613-18557632 MsG0480019329.01.T01:CDS 30.0%
! CAAATCCTTTTAGACAACTT+TGG + Chr4:18559811-18559830 None:intergenic 30.0%
! GAGCTTTATAATGAGATCAA+AGG - Chr4:18557442-18557461 MsG0480019329.01.T01:intron 30.0%
! GTTTTTATTCTCCGATCAAA+TGG - Chr4:18559036-18559055 MsG0480019329.01.T01:intron 30.0%
! TGGAATAATGTTTTCCAATC+TGG - Chr4:18560495-18560514 MsG0480019329.01.T01:CDS 30.0%
! TGGGTTTTCATTGTTTGATT+TGG - Chr4:18558813-18558832 MsG0480019329.01.T01:intron 30.0%
! TGTGGTTGTGTAATGATTTT+TGG - Chr4:18556389-18556408 MsG0480019329.01.T01:CDS 30.0%
!! ATTCTTTGACTTGGATGTAT+TGG - Chr4:18560434-18560453 MsG0480019329.01.T01:CDS 30.0%
!! CAGTATTGACGATAAATTTC+AGG + Chr4:18559218-18559237 None:intergenic 30.0%
!! CCTTTATTGATTCTTTGACT+TGG - Chr4:18560425-18560444 MsG0480019329.01.T01:CDS 30.0%
!! GGGTTTTCATTGTTTGATTT+GGG - Chr4:18558814-18558833 MsG0480019329.01.T01:intron 30.0%
!! GTTGTTTTCTCTAATTTGAG+GGG - Chr4:18557998-18558017 MsG0480019329.01.T01:intron 30.0%
!!! AGGTAGCTTTTTTTAGAGTA+AGG - Chr4:18557064-18557083 MsG0480019329.01.T01:intron 30.0%
!!! ATTTGTATGGTGGATTCTTT+TGG - Chr4:18557681-18557700 MsG0480019329.01.T01:intron 30.0%
!!! CTATTTCCCTTTTTTTTTGC+AGG - Chr4:18556669-18556688 MsG0480019329.01.T01:intron 30.0%
!!! TGGTGTGATATTTTTTTTGG+TGG - Chr4:18560716-18560735 MsG0480019329.01.T01:CDS 30.0%
AAAGAGTAATGTAGCTGAAG+TGG - Chr4:18556186-18556205 MsG0480019329.01.T01:three_prime_UTR 35.0%
AAGTGCACAGATTTAGTGAA+AGG + Chr4:18556043-18556062 None:intergenic 35.0%
AATAAGAGAAGATGCATCCA+TGG + Chr4:18560277-18560296 None:intergenic 35.0%
ACGATTAACTACTAGAATGC+AGG + Chr4:18556928-18556947 None:intergenic 35.0%
AGAATATGAAGGTAAGCTGA+TGG + Chr4:18558207-18558226 None:intergenic 35.0%
AGACATTGAAAGATGGCAAA+AGG - Chr4:18556581-18556600 MsG0480019329.01.T01:intron 35.0%
ATAGCAGCTATGTTTATGCT+GGG - Chr4:18560534-18560553 MsG0480019329.01.T01:CDS 35.0%
CAAAAAGGTTATTCAGCAGT+TGG - Chr4:18557216-18557235 MsG0480019329.01.T01:intron 35.0%
CAAAGCAAGTTAAACAACTC+GGG + Chr4:18558962-18558981 None:intergenic 35.0%
CAACCTCTTGTGTAAAAACA+AGG - Chr4:18558088-18558107 MsG0480019329.01.T01:intron 35.0%
CAACTCCCTGCAAAAAAAAA+GGG + Chr4:18556678-18556697 None:intergenic 35.0%
CATACATATGATTGGATGTG+TGG - Chr4:18558396-18558415 MsG0480019329.01.T01:intron 35.0%
CCATATAGGATCTGATCATA+TGG - Chr4:18559523-18559542 MsG0480019329.01.T01:CDS 35.0%
CCATATGATCAGATCCTATA+TGG + Chr4:18559526-18559545 None:intergenic 35.0%
CGAAATACCTTGGTTGTATA+GGG + Chr4:18557245-18557264 None:intergenic 35.0%
CTCATTATAAAGCTCCAATG+TGG + Chr4:18557437-18557456 None:intergenic 35.0%
CTCTGTACAGTAATCTCAAT+CGG + Chr4:18556982-18557001 None:intergenic 35.0%
GAAGAATCTGAGCATCAAAT+TGG + Chr4:18556477-18556496 None:intergenic 35.0%
GACATGAAAATGCACTAAGA+AGG - Chr4:18559891-18559910 MsG0480019329.01.T01:intron 35.0%
GAGTGTGAATAATTGTTTGG+TGG - Chr4:18557606-18557625 MsG0480019329.01.T01:CDS 35.0%
GATCATATGGAGGATAACTT+TGG - Chr4:18559536-18559555 MsG0480019329.01.T01:CDS 35.0%
GCAGATTACCTTATAGTTTC+AGG - Chr4:18557044-18557063 MsG0480019329.01.T01:intron 35.0%
GGATCTAGAGATTAATGAGT+TGG - Chr4:18558630-18558649 MsG0480019329.01.T01:intron 35.0%
GTTAAACTTCAGTAGGTGTA+TGG + Chr4:18559840-18559859 None:intergenic 35.0%
TAAAGAAGCTAAGGAATCAG+CGG - Chr4:18556132-18556151 MsG0480019329.01.T01:three_prime_UTR 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - Chr4:18558039-18558058 MsG0480019329.01.T01:intron 35.0%
TAAATCTGAAGGGGACAAAA+AGG - Chr4:18557201-18557220 MsG0480019329.01.T01:intron 35.0%
TAAGATCCCTGTTAGATCAA+CGG + Chr4:18556821-18556840 None:intergenic 35.0%
TAAGCTAGACTTAGTTGGTT+TGG - Chr4:18558494-18558513 MsG0480019329.01.T01:intron 35.0%
TATAGCAGCTATGTTTATGC+TGG - Chr4:18560533-18560552 MsG0480019329.01.T01:CDS 35.0%
TATAGGATCTGATCATATGG+AGG - Chr4:18559526-18559545 MsG0480019329.01.T01:CDS 35.0%
TCGAAATACCTTGGTTGTAT+AGG + Chr4:18557246-18557265 None:intergenic 35.0%
TCTCTTATTCCTTTGGATGA+AGG - Chr4:18560288-18560307 MsG0480019329.01.T01:intron 35.0%
TCTTGACAGACATTGAAAGA+TGG - Chr4:18556574-18556593 MsG0480019329.01.T01:intron 35.0%
TGCATCTTCTCTTATTCCTT+TGG - Chr4:18560281-18560300 MsG0480019329.01.T01:intron 35.0%
TGGTATAAGCTAGACTTAGT+TGG - Chr4:18558489-18558508 MsG0480019329.01.T01:intron 35.0%
TGTACAGGATCGAATGATAT+CGG - Chr4:18556276-18556295 MsG0480019329.01.T01:three_prime_UTR 35.0%
TTAGAGACTTGAACGGTAAA+TGG - Chr4:18558279-18558298 MsG0480019329.01.T01:intron 35.0%
TTATTTGCCCTTCCAAAAAG+TGG - Chr4:18559610-18559629 MsG0480019329.01.T01:intron 35.0%
TTGACTAGTATCTGAGGAAT+AGG + Chr4:18557020-18557039 None:intergenic 35.0%
! AAGCTAGACTTAGTTGGTTT+GGG - Chr4:18558495-18558514 MsG0480019329.01.T01:intron 35.0%
! ACTTTGTTCAGATGGATTCT+CGG - Chr4:18559141-18559160 MsG0480019329.01.T01:intron 35.0%
! ATTAACTGATGTTAGCCTCT+TGG - Chr4:18560012-18560031 MsG0480019329.01.T01:intron 35.0%
! GAATAATTGTTTGGTGGAAG+TGG - Chr4:18557612-18557631 MsG0480019329.01.T01:CDS 35.0%
! GCCTCTTAAGTATTTTCTCA+TGG + Chr4:18557488-18557507 None:intergenic 35.0%
! GGCAAAAGGTATATGACATT+TGG - Chr4:18556595-18556614 MsG0480019329.01.T01:intron 35.0%
! GTTGTTGTTGTATCTTCTCT+GGG - Chr4:18558734-18558753 MsG0480019329.01.T01:intron 35.0%
! GTTTCAGGTGGCAAAAATAA+CGG - Chr4:18556533-18556552 MsG0480019329.01.T01:intron 35.0%
! TAATGAGTTGGAGAAAGACA+TGG - Chr4:18558642-18558661 MsG0480019329.01.T01:intron 35.0%
! TCTTAGTGCATTTTCATGTC+AGG + Chr4:18559891-18559910 None:intergenic 35.0%
! TGACTTGGATGTATTGGATT+TGG - Chr4:18560440-18560459 MsG0480019329.01.T01:CDS 35.0%
! TGTTGTTGTTGTATCTTCTC+TGG - Chr4:18558733-18558752 MsG0480019329.01.T01:intron 35.0%
! TTAACTGATGTTAGCCTCTT+GGG - Chr4:18560013-18560032 MsG0480019329.01.T01:intron 35.0%
!! CATTGTTGACTTTGTTCAGA+TGG - Chr4:18559133-18559152 MsG0480019329.01.T01:intron 35.0%
!! TGCTATTGTTGTTTAGTGCT+GGG - Chr4:18559705-18559724 MsG0480019329.01.T01:intron 35.0%
!! TTGCTATTGTTGTTTAGTGC+TGG - Chr4:18559704-18559723 MsG0480019329.01.T01:intron 35.0%
!!! GTACCTTGTTTTTACACAAG+AGG + Chr4:18558094-18558113 None:intergenic 35.0%
AAACTTGGTCTGCACTGAAA+TGG - Chr4:18560189-18560208 MsG0480019329.01.T01:CDS 40.0%
AAAGAAGCTAAGGAATCAGC+GGG - Chr4:18556133-18556152 MsG0480019329.01.T01:three_prime_UTR 40.0%
AAATGGCACCTGTTATCATG+TGG - Chr4:18559177-18559196 MsG0480019329.01.T01:intron 40.0%
AAATGTTTAGCCACACCCTT+TGG + Chr4:18560048-18560067 None:intergenic 40.0%
AAGCGCCAAAGTTGTCTAAA+AGG - Chr4:18559803-18559822 MsG0480019329.01.T01:intron 40.0%
ACAAAAGAGAAGGTGGTTGT+GGG - Chr4:18556343-18556362 MsG0480019329.01.T01:three_prime_UTR 40.0%
ACCTGTTATCATGTGGCAAA+AGG - Chr4:18559184-18559203 MsG0480019329.01.T01:intron 40.0%
AGAACCTGGTTCAACTACTT+GGG - Chr4:18559280-18559299 MsG0480019329.01.T01:CDS 40.0%
AGGATAACTTTGGGTGTAGA+AGG - Chr4:18559546-18559565 MsG0480019329.01.T01:CDS 40.0%
AGTAGTTCCGTTGATCTAAC+AGG - Chr4:18556811-18556830 MsG0480019329.01.T01:intron 40.0%
CAATCGGAACTCCAAATACT+GGG + Chr4:18556966-18556985 None:intergenic 40.0%
CACCGTGATGATCATATTCA+GGG + Chr4:18559009-18559028 None:intergenic 40.0%
CATACCTTATCCCACTATGT+GGG + Chr4:18558711-18558730 None:intergenic 40.0%
CCTGTTATCATGTGGCAAAA+GGG - Chr4:18559185-18559204 MsG0480019329.01.T01:intron 40.0%
CGATTGAGATTACTGTACAG+AGG - Chr4:18556980-18556999 MsG0480019329.01.T01:intron 40.0%
CGTACAATACACCAAATGGT+GGG - Chr4:18558119-18558138 MsG0480019329.01.T01:intron 40.0%
CTCCCTGAATATGATCATCA+CGG - Chr4:18559004-18559023 MsG0480019329.01.T01:intron 40.0%
CTTAAGGTCAGCCATTTGAT+CGG + Chr4:18559050-18559069 None:intergenic 40.0%
CTTGGGATCTTCTTTCCAAA+GGG - Chr4:18560030-18560049 MsG0480019329.01.T01:intron 40.0%
GATCCTATATGGGCCTATAT+TGG + Chr4:18559515-18559534 None:intergenic 40.0%
GCAACTCCCTGCAAAAAAAA+AGG + Chr4:18556679-18556698 None:intergenic 40.0%
GCACAATTGACTAGTATCTG+AGG + Chr4:18557026-18557045 None:intergenic 40.0%
GGTCAAGCTTAAAGAAGCTA+AGG - Chr4:18556123-18556142 MsG0480019329.01.T01:three_prime_UTR 40.0%
GTAGTTCCGTTGATCTAACA+GGG - Chr4:18556812-18556831 MsG0480019329.01.T01:intron 40.0%
GTCAGAAGTCACTTCTCATA+AGG - Chr4:18557565-18557584 MsG0480019329.01.T01:CDS 40.0%
TAGCAGCTATGTTTATGCTG+GGG - Chr4:18560535-18560554 MsG0480019329.01.T01:CDS 40.0%
TCAATCGGAACTCCAAATAC+TGG + Chr4:18556967-18556986 None:intergenic 40.0%
TCACCGTGATGATCATATTC+AGG + Chr4:18559010-18559029 None:intergenic 40.0%
TCATATTCAGGGAGTGAAGA+AGG + Chr4:18558998-18559017 None:intergenic 40.0%
TCTAATTTGAGGGGTAACCT+TGG - Chr4:18558007-18558026 MsG0480019329.01.T01:intron 40.0%
TCTTGGGATCTTCTTTCCAA+AGG - Chr4:18560029-18560048 MsG0480019329.01.T01:intron 40.0%
TGCATAGCAGTGTGTCAAAA+TGG + Chr4:18556853-18556872 None:intergenic 40.0%
TGTACAGCATGTCTTGTAGA+CGG + Chr4:18556262-18556281 None:intergenic 40.0%
TTAGTGATGAGAGTTTCTGC+AGG + Chr4:18560683-18560702 None:intergenic 40.0%
TTATGCTGGGGAAACATGTT+GGG - Chr4:18560547-18560566 MsG0480019329.01.T01:CDS 40.0%
TTCTGGATTCAAGCTCTGTT+TGG + Chr4:18559264-18559283 None:intergenic 40.0%
TTGGGACGGTATTCAAAAGT+CGG - Chr4:18556218-18556237 MsG0480019329.01.T01:three_prime_UTR 40.0%
TTTATGCTGGGGAAACATGT+TGG - Chr4:18560546-18560565 MsG0480019329.01.T01:CDS 40.0%
TTTGAGGAGAAGGCCAATAT+AGG - Chr4:18559499-18559518 MsG0480019329.01.T01:intron 40.0%
TTTGGAAAGAAGATCCCAAG+AGG + Chr4:18560030-18560049 None:intergenic 40.0%
TTTGTCAGGGACAAAAGAGA+AGG - Chr4:18556333-18556352 MsG0480019329.01.T01:three_prime_UTR 40.0%
!! ACTGGTCCAGTTTTAGTGAA+AGG - Chr4:18560571-18560590 MsG0480019329.01.T01:CDS 40.0%
!! GATTTAGTGAAAGGTACCTG+AGG + Chr4:18556034-18556053 None:intergenic 40.0%
!!! TTTATTTTTGGGTTGCAGGG+AGG - Chr4:18560623-18560642 MsG0480019329.01.T01:CDS 40.0%
AAGGAGAGTAGATCAGATCG+AGG - Chr4:18558550-18558569 MsG0480019329.01.T01:intron 45.0%
AATGATCGTCACGTCCAGAT+TGG + Chr4:18560512-18560531 None:intergenic 45.0%
ACAAGAGCTGCTACATCAAC+TGG + Chr4:18557379-18557398 None:intergenic 45.0%
AGAAGGTGACACTGTTCTTG+AGG - Chr4:18559908-18559927 MsG0480019329.01.T01:intron 45.0%
AGGAGAGTAGATCAGATCGA+GGG - Chr4:18558551-18558570 MsG0480019329.01.T01:intron 45.0%
AGGCCAATATAGGCCCATAT+AGG - Chr4:18559509-18559528 MsG0480019329.01.T01:intron 45.0%
AGTAATGTAGCTGAAGTGGC+GGG - Chr4:18556190-18556209 MsG0480019329.01.T01:three_prime_UTR 45.0%
ATGTCCCAAGTAGTTGAACC+AGG + Chr4:18559287-18559306 None:intergenic 45.0%
CAAAAGAGAAGGTGGTTGTG+GGG - Chr4:18556344-18556363 MsG0480019329.01.T01:three_prime_UTR 45.0%
CAAGTAGTTGAACCAGGTTC+TGG + Chr4:18559281-18559300 None:intergenic 45.0%
CACTGAGGTGAGATTACAGA+AGG + Chr4:18555983-18556002 None:intergenic 45.0%
CAGAACCTGGTTCAACTACT+TGG - Chr4:18559279-18559298 MsG0480019329.01.T01:CDS 45.0%
CAGAGTCATATAGTTCACGC+TGG + Chr4:18557514-18557533 None:intergenic 45.0%
CAGCGTGAACTATATGACTC+TGG - Chr4:18557512-18557531 MsG0480019329.01.T01:CDS 45.0%
CAGGGAGTTGCTAAAACTGA+CGG - Chr4:18556688-18556707 MsG0480019329.01.T01:intron 45.0%
CATCTTGACCACCCAGTATT+TGG - Chr4:18556952-18556971 MsG0480019329.01.T01:intron 45.0%
CCAAGGTTGAAGAGGTAATG+TGG - Chr4:18556371-18556390 MsG0480019329.01.T01:CDS 45.0%
CCACATTACCTCTTCAACCT+TGG + Chr4:18556374-18556393 None:intergenic 45.0%
CCATACCTTATCCCACTATG+TGG + Chr4:18558712-18558731 None:intergenic 45.0%
CTTCTGTAATCTCACCTCAG+TGG - Chr4:18555981-18556000 MsG0480019329.01.T01:three_prime_UTR 45.0%
GAAGTGACTTCTGACTAGCA+CGG + Chr4:18557560-18557579 None:intergenic 45.0%
GACAAAAGAGAAGGTGGTTG+TGG - Chr4:18556342-18556361 MsG0480019329.01.T01:three_prime_UTR 45.0%
GACGGTATTCAAAAGTCGGT+GGG - Chr4:18556222-18556241 MsG0480019329.01.T01:three_prime_UTR 45.0%
GAGTAATGTAGCTGAAGTGG+CGG - Chr4:18556189-18556208 MsG0480019329.01.T01:three_prime_UTR 45.0%
GAGTCATGTCACTAGTGGTA+GGG - Chr4:18558574-18558593 MsG0480019329.01.T01:intron 45.0%
GATCTTCTTTCCAAAGGGTG+TGG - Chr4:18560035-18560054 MsG0480019329.01.T01:intron 45.0%
GATGTGTGGTAAGACTAGAC+GGG - Chr4:18558410-18558429 MsG0480019329.01.T01:intron 45.0%
GCGTACAATACACCAAATGG+TGG - Chr4:18558118-18558137 MsG0480019329.01.T01:intron 45.0%
GCTGCGTACAATACACCAAA+TGG - Chr4:18558115-18558134 MsG0480019329.01.T01:intron 45.0%
GGATGTGTGGTAAGACTAGA+CGG - Chr4:18558409-18558428 MsG0480019329.01.T01:intron 45.0%
GGATTCAAGCTCTGTTTGGA+AGG + Chr4:18559260-18559279 None:intergenic 45.0%
GGTCGGCTACATGAATCAAA+CGG + Chr4:18558690-18558709 None:intergenic 45.0%
GTCTACAAGACATGCTGTAC+AGG - Chr4:18556261-18556280 MsG0480019329.01.T01:three_prime_UTR 45.0%
GTGGGATTGGGTTTCGTATA+TGG - Chr4:18557631-18557650 MsG0480019329.01.T01:CDS 45.0%
GTTGTTGTCATGTGACTGGA+AGG - Chr4:18558043-18558062 MsG0480019329.01.T01:intron 45.0%
TAAAGCTCCAATGTGGTCAG+TGG + Chr4:18557430-18557449 None:intergenic 45.0%
TCAACTGGATTTGAGCCTTC+TGG + Chr4:18557364-18557383 None:intergenic 45.0%
TCATTTCCAGACTGTCTCGT+TGG + Chr4:18560388-18560407 None:intergenic 45.0%
TTGGTTGCCCTATACAACCA+AGG - Chr4:18557235-18557254 MsG0480019329.01.T01:intron 45.0%
! CCACATAGTGGGATAAGGTA+TGG - Chr4:18558709-18558728 MsG0480019329.01.T01:intron 45.0%
! CCCTTTTGCCACATGATAAC+AGG + Chr4:18559188-18559207 None:intergenic 45.0%
! GAGTGGTTCTTTTCTTCCTC+AGG - Chr4:18556015-18556034 MsG0480019329.01.T01:three_prime_UTR 45.0%
! TGTTTGGTGGAAGTGGGATT+GGG - Chr4:18557619-18557638 MsG0480019329.01.T01:CDS 45.0%
! TTGTTTGGTGGAAGTGGGAT+TGG - Chr4:18557618-18557637 MsG0480019329.01.T01:CDS 45.0%
!! TGCACTGAAATGGTGCTGAT+TGG - Chr4:18560199-18560218 MsG0480019329.01.T01:CDS 45.0%
!! TGTTGTATCTTCTCTGGGAC+AGG - Chr4:18558739-18558758 MsG0480019329.01.T01:intron 45.0%
!!! ATTAAGTAATTAATTTTTTT+TGG - Chr4:18557750-18557769 MsG0480019329.01.T01:intron 5.0%
!!! ATTTTTACTTTAATAAAAAT+TGG - Chr4:18556896-18556915 MsG0480019329.01.T01:intron 5.0%
!!! TCTTTTAATATTTTATTTTT+GGG - Chr4:18560612-18560631 MsG0480019329.01.T01:CDS 5.0%
AAGCTGATGGCCAGACACAA+AGG + Chr4:18558194-18558213 None:intergenic 50.0%
AAGGTCACGGGTTCAAGTCT+TGG - Chr4:18558062-18558081 MsG0480019329.01.T01:intron 50.0%
ACTAAAGCTCCAGCATACGC+AGG + Chr4:18558159-18558178 None:intergenic 50.0%
ACTAGCACGGAGCAAAAGTG+CGG + Chr4:18557547-18557566 None:intergenic 50.0%
ACTGGCATGCCTTCATCCAA+AGG + Chr4:18560300-18560319 None:intergenic 50.0%
AGCTGATGGCCAGACACAAA+GGG + Chr4:18558193-18558212 None:intergenic 50.0%
AGGTGACACTGTTCTTGAGG+AGG - Chr4:18559911-18559930 MsG0480019329.01.T01:intron 50.0%
ATGTAGCCGACCCACATAGT+GGG - Chr4:18558698-18558717 MsG0480019329.01.T01:intron 50.0%
CAACTTTACCAGTTGCGCCA+AGG + Chr4:18558027-18558046 None:intergenic 50.0%
CAGAGCTTGAATCCAGAACC+TGG - Chr4:18559266-18559285 MsG0480019329.01.T01:CDS 50.0%
CCTTATCCCACTATGTGGGT+CGG + Chr4:18558707-18558726 None:intergenic 50.0%
CGGGAAACAGAGCTAAAACG+AGG + Chr4:18558943-18558962 None:intergenic 50.0%
CTAAAGCTCCAGCATACGCA+GGG + Chr4:18558158-18558177 None:intergenic 50.0%
CTCACCTCAGTGGCAAGATA+AGG - Chr4:18555991-18556010 MsG0480019329.01.T01:three_prime_UTR 50.0%
GAATCAGCGGGAACGTTTGT+TGG - Chr4:18556145-18556164 MsG0480019329.01.T01:three_prime_UTR 50.0%
GGACGGTATTCAAAAGTCGG+TGG - Chr4:18556221-18556240 MsG0480019329.01.T01:three_prime_UTR 50.0%
GGAGAGTAGATCAGATCGAG+GGG - Chr4:18558552-18558571 MsG0480019329.01.T01:intron 50.0%
GGAGTCATGTCACTAGTGGT+AGG - Chr4:18558573-18558592 MsG0480019329.01.T01:intron 50.0%
GGGGAAATCCAAGGTTGAAG+AGG - Chr4:18556363-18556382 MsG0480019329.01.T01:exon 50.0%
GTCAGGGACAAAAGAGAAGG+TGG - Chr4:18556336-18556355 MsG0480019329.01.T01:three_prime_UTR 50.0%
GTCATGTGACTGGAAGGTCA+CGG - Chr4:18558049-18558068 MsG0480019329.01.T01:intron 50.0%
TCATGTGACTGGAAGGTCAC+GGG - Chr4:18558050-18558069 MsG0480019329.01.T01:intron 50.0%
TCCTGAGGAGAGGTTTGTCA+GGG - Chr4:18556320-18556339 MsG0480019329.01.T01:three_prime_UTR 50.0%
TCGATTGCACCGAAGTCAAC+TGG + Chr4:18560318-18560337 None:intergenic 50.0%
TCGGAACTCCAAATACTGGG+TGG + Chr4:18556963-18556982 None:intergenic 50.0%
TCGGAGCCTTGCAATGGAAA+TGG - Chr4:18559160-18559179 MsG0480019329.01.T01:intron 50.0%
TGGGGAAACATGTTGGGTAC+TGG - Chr4:18560553-18560572 MsG0480019329.01.T01:CDS 50.0%
TTCCTGAGGAGAGGTTTGTC+AGG - Chr4:18556319-18556338 MsG0480019329.01.T01:three_prime_UTR 50.0%
! ATGCTGGAGCTTTAGTGCAC+CGG - Chr4:18558163-18558182 MsG0480019329.01.T01:intron 50.0%
! CTGAAGTGGCGGGAAAAGTT+GGG - Chr4:18556200-18556219 MsG0480019329.01.T01:three_prime_UTR 50.0%
! GAAGGCATGCCAGTTGACTT+CGG - Chr4:18560306-18560325 MsG0480019329.01.T01:intron 50.0%
! GTTTGTTGGCGAGGTCACAA+AGG - Chr4:18556159-18556178 MsG0480019329.01.T01:three_prime_UTR 50.0%
!! CAGGTGCCATTTCCATTGCA+AGG + Chr4:18559169-18559188 None:intergenic 50.0%
ACTACTTGGGACATGCTCGC+TGG - Chr4:18559293-18559312 MsG0480019329.01.T01:CDS 55.0%
ACTGGTGCATTCCTGAGGAG+AGG - Chr4:18556310-18556329 MsG0480019329.01.T01:three_prime_UTR 55.0%
ATGTGGTCAGTGGCTCAGGA+AGG + Chr4:18557420-18557439 None:intergenic 55.0%
CAGATGCCAACGAGACAGTC+TGG - Chr4:18560379-18560398 MsG0480019329.01.T01:intron 55.0%
CAGTGGCAAGATAAGGCGAG+TGG - Chr4:18555998-18556017 MsG0480019329.01.T01:three_prime_UTR 55.0%
CATGTAGCCGACCCACATAG+TGG - Chr4:18558697-18558716 MsG0480019329.01.T01:intron 55.0%
CTACGACTGGTGCATTCCTG+AGG - Chr4:18556305-18556324 MsG0480019329.01.T01:three_prime_UTR 55.0%
CTCGCCTTATCTTGCCACTG+AGG + Chr4:18555998-18556017 None:intergenic 55.0%
GAGGGGAGTCATGTCACTAG+TGG - Chr4:18558569-18558588 MsG0480019329.01.T01:intron 55.0%
GGATTCTCGGAGCCTTGCAA+TGG - Chr4:18559154-18559173 MsG0480019329.01.T01:intron 55.0%
GGTGGTTGTGGGGAAATCCA+AGG - Chr4:18556354-18556373 MsG0480019329.01.T01:exon 55.0%
TCAACTGCTGCAGTGCCAGA+AGG - Chr4:18557346-18557365 MsG0480019329.01.T01:intron 55.0%
TCCAATGTGGTCAGTGGCTC+AGG + Chr4:18557424-18557443 None:intergenic 55.0%
TCCCTGACAAACCTCTCCTC+AGG + Chr4:18556324-18556343 None:intergenic 55.0%
TCCTGAGCCACTGACCACAT+TGG - Chr4:18557420-18557439 MsG0480019329.01.T01:intron 55.0%
TGCAGACGAGAGTGAAGCCA+TGG - Chr4:18560257-18560276 MsG0480019329.01.T01:intron 55.0%
! AGTGGCGGGAAAAGTTGGGA+CGG - Chr4:18556204-18556223 MsG0480019329.01.T01:three_prime_UTR 55.0%
! ATATCGGCTGCTGCTACGAC+TGG - Chr4:18556292-18556311 MsG0480019329.01.T01:three_prime_UTR 55.0%
! CCGACCCACATAGTGGGATA+AGG - Chr4:18558704-18558723 MsG0480019329.01.T01:intron 55.0%
! GCTGAAGTGGCGGGAAAAGT+TGG - Chr4:18556199-18556218 MsG0480019329.01.T01:three_prime_UTR 55.0%
! TGCTGGAGCTTTAGTGCACC+GGG - Chr4:18558164-18558183 MsG0480019329.01.T01:intron 55.0%
AAGTCGGTGGGCACGTCTTC+AGG - Chr4:18556234-18556253 MsG0480019329.01.T01:three_prime_UTR 60.0%
ACCGGGTTGCCCTTTGTGTC+TGG - Chr4:18558181-18558200 MsG0480019329.01.T01:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - Chr4:18558016-18558035 MsG0480019329.01.T01:intron 60.0%
GCCAGACACAAAGGGCAACC+CGG + Chr4:18558185-18558204 None:intergenic 60.0%
! AGCGGGAACGTTTGTTGGCG+AGG - Chr4:18556150-18556169 MsG0480019329.01.T01:three_prime_UTR 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - Chr4:18558131-18558150 MsG0480019329.01.T01:intron 60.0%
AGCATACGCAGGGTCCGGGA+AGG + Chr4:18558148-18558167 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + Chr4:18558146-18558165 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + Chr4:18558133-18558152 None:intergenic 65.0%
CTCCAGCATACGCAGGGTCC+GGG + Chr4:18558152-18558171 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + Chr4:18558147-18558166 None:intergenic 65.0%
GCTCCAGCATACGCAGGGTC+CGG + Chr4:18558153-18558172 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+TGG - Chr4:18558147-18558166 MsG0480019329.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 18555977 18560799 18555977 ID=MsG0480019329.01;Name=MsG0480019329.01
Chr4 mRNA 18555977 18560799 18555977 ID=MsG0480019329.01.T01;Parent=MsG0480019329.01;Name=MsG0480019329.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.66|0.57|1|1|1|7|392|358
Chr4 exon 18555977 18556514 18555977 ID=MsG0480019329.01.T01:exon:6270;Parent=MsG0480019329.01.T01
Chr4 exon 18557462 18557652 18557462 ID=MsG0480019329.01.T01:exon:6269;Parent=MsG0480019329.01.T01
Chr4 exon 18559261 18559432 18559261 ID=MsG0480019329.01.T01:exon:6268;Parent=MsG0480019329.01.T01
Chr4 exon 18559520 18559597 18559520 ID=MsG0480019329.01.T01:exon:6267;Parent=MsG0480019329.01.T01
Chr4 exon 18560067 18560085 18560067 ID=MsG0480019329.01.T01:exon:6266;Parent=MsG0480019329.01.T01
Chr4 exon 18560174 18560236 18560174 ID=MsG0480019329.01.T01:exon:6265;Parent=MsG0480019329.01.T01
Chr4 exon 18560392 18560799 18560392 ID=MsG0480019329.01.T01:exon:6264;Parent=MsG0480019329.01.T01
Chr4 CDS 18560392 18560799 18560392 ID=MsG0480019329.01.T01:cds;Parent=MsG0480019329.01.T01
Chr4 CDS 18560174 18560236 18560174 ID=MsG0480019329.01.T01:cds;Parent=MsG0480019329.01.T01
Chr4 CDS 18560067 18560085 18560067 ID=MsG0480019329.01.T01:cds;Parent=MsG0480019329.01.T01
Chr4 CDS 18559520 18559597 18559520 ID=MsG0480019329.01.T01:cds;Parent=MsG0480019329.01.T01
Chr4 CDS 18559261 18559432 18559261 ID=MsG0480019329.01.T01:cds;Parent=MsG0480019329.01.T01
Chr4 CDS 18557462 18557652 18557462 ID=MsG0480019329.01.T01:cds;Parent=MsG0480019329.01.T01
Chr4 CDS 18556369 18556514 18556369 ID=MsG0480019329.01.T01:cds;Parent=MsG0480019329.01.T01
Chr4 three_prime_UTR 18555977 18556368 18555977 ID=MsG0480019329.01.T01:three_prime_utr;Parent=MsG0480019329.01.T01
Gene Sequence

>MsG0480019329.01.T01

ATGCCTTCTGTAATCTCACCTCAGTGGCAAGATAAGGCGAGTGGTTCTTTTCTTCCTCAGGTACCTTTCACTAAATCTGTGCACTTCTTTCCTTTTCTTGATTACTACCGTATGCTCTTTGTTTGTTTATATAAATTTAATGTAGGGGTCAAGCTTAAAGAAGCTAAGGAATCAGCGGGAACGTTTGTTGGCGAGGTCACAAAGGATACAAAGAGTAATGTAGCTGAAGTGGCGGGAAAAGTTGGGACGGTATTCAAAAGTCGGTGGGCACGTCTTCAGGAGCCGTCTACAAGACATGCTGTACAGGATCGAATGATATCGGCTGCTGCTACGACTGGTGCATTCCTGAGGAGAGGTTTGTCAGGGACAAAAGAGAAGGTGGTTGTGGGGAAATCCAAGGTTGAAGAGGTGGCAAAAATAACGGCGCAAAAAAGTAAGACTATCTTGACAGACATTGAAAGATGGCAAAAGGGAGTTGCTAAAACTGACGGATTGAATCTGCCATATCTTTTTAAATCTGAAGGGGACAAAAAGGTTATTCAGCAGTTGGTTGCCCTATACAACCAAGATTCAACTGCTGCAGTGCCAGAAGGCTCAAATCCAGTTGATGTAGCAGCTCTTGTAAAATACTATCTTGCTAGCCTTCCTGAGCCACTGACCACATTGGAGCTTTATAATGAGATCAAAGGTGCTCGAACCAACATATATTCCATGAGAAAATACTTAAGAGGCTTTCCAGCCATGCTCAACATTGTTGACTTTGTTCAGATGGATTCTCGGAGCCTTGCAATGGAAATGGCACCTGTTATCATGTGGCAAAAGGGATGTAGACCTGAAATTTATCGTCAATACTGGAGTCAAATGTCAGAAAGTCCTTCCAAACAGAGCTTGAATCCAGAACCTGGTTCAACTACTTGGGACATGCTCGCTGACGAGAGTGAAGCCATGGATGCATCTTCTCTTATTCCTTTGGATGAAGGCATGCCAGTTGACTTCGGTGCAATCGAAGTTGTTCAGTTGCTCATAGAACATCATAATGCAGTCTTCACAGATGCCAACGAGACAGTCTGGAAATGA

Protein sequence

>MsG0480019329.01.T01

MPSVISPQWQDKASGSFLPQVPFTKSVHFFPFLDYYRMLFVCLYKFNVGVKLKEAKESAGTFVGEVTKDTKSNVAEVAGKVGTVFKSRWARLQEPSTRHAVQDRMISAAATTGAFLRRGLSGTKEKVVVGKSKVEEVAKITAQKSKTILTDIERWQKGVAKTDGLNLPYLFKSEGDKKVIQQLVALYNQDSTAAVPEGSNPVDVAALVKYYLASLPEPLTTLELYNEIKGARTNIYSMRKYLRGFPAMLNIVDFVQMDSRSLAMEMAPVIMWQKGCRPEIYRQYWSQMSESPSKQSLNPEPGSTTWDMLADESEAMDASSLIPLDEGMPVDFGAIEVVQLLIEHHNAVFTDANETVWK*