AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014573.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014573.01.T01 MTR_3g060660 97.546 652 16 0 1 652 1 652 0.0 1250
MsG0380014573.01.T01 MTR_3g060660 97.800 591 13 0 62 652 51 641 0.0 1121
MsG0380014573.01.T01 MTR_5g096080 58.533 668 252 8 1 652 1 659 0.0 619
MsG0380014573.01.T01 MTR_3g007920 59.132 668 248 8 1 652 1 659 0.0 619
MsG0380014573.01.T01 MTR_2g027130 43.540 565 307 7 11 570 8 565 1.47e-111 348
MsG0380014573.01.T01 MTR_4g134110 45.115 563 272 11 14 566 6 541 1.23e-97 311
MsG0380014573.01.T01 MTR_3g101660 30.033 606 387 10 4 580 269 866 2.08e-43 168
MsG0380014573.01.T01 MTR_1g019490 27.603 634 389 15 11 594 257 870 5.98e-37 148
MsG0380014573.01.T01 MTR_4g133450 43.450 313 159 6 261 566 4 305 2.31e-35 136
MsG0380014573.01.T01 MTR_7g082660 28.923 650 385 19 31 637 12 627 2.86e-26 114
MsG0380014573.01.T01 MTR_8g070840 31.162 568 326 16 24 571 27 549 1.95e-25 112
MsG0380014573.01.T01 MTR_7g072550 27.473 273 193 2 299 571 166 433 4.22e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014573.01.T01 AT5G55860 55.522 661 273 11 1 652 1 649 0.0 577
MsG0380014573.01.T01 AT1G12150 40.934 557 307 4 12 568 9 543 1.53e-108 338
MsG0380014573.01.T01 AT1G12150 40.934 557 307 4 12 568 9 543 1.53e-108 338
MsG0380014573.01.T01 AT4G17210 32.925 571 328 9 2 565 1 523 2.00e-63 219
MsG0380014573.01.T01 AT2G26570 29.711 589 382 9 9 573 151 731 2.33e-40 158
MsG0380014573.01.T01 AT2G26570 29.711 589 382 9 9 573 151 731 2.33e-40 158
MsG0380014573.01.T01 AT4G33390 28.843 579 367 10 24 571 156 720 1.41e-31 131
MsG0380014573.01.T01 AT5G42880 27.807 579 371 13 11 571 117 666 2.08e-25 112
MsG0380014573.01.T01 AT1G66840 27.916 523 321 10 32 531 11 500 3.82e-24 107
MsG0380014573.01.T01 AT1G66840 27.916 523 321 10 32 531 11 500 3.82e-24 107
MsG0380014573.01.T01 AT1G45545 25.926 594 376 14 3 576 134 683 8.27e-21 97.8
MsG0380014573.01.T01 AT1G45545 25.926 594 376 14 3 576 135 684 9.20e-21 97.4
MsG0380014573.01.T01 AT3G13190 33.108 296 105 7 300 592 93 298 1.13e-19 90.9
MsG0380014573.01.T01 AT3G13190 43.678 87 44 1 28 114 2 83 8.10e-11 64.3
MsG0380014573.01.T01 AT3G13190 33.108 296 105 7 300 592 93 298 1.13e-19 90.9
MsG0380014573.01.T01 AT3G13190 43.678 87 44 1 28 114 2 83 8.10e-11 64.3
MsG0380014573.01.T01 AT3G13190 33.108 296 105 7 300 592 93 298 1.13e-19 90.9
MsG0380014573.01.T01 AT3G13190 43.678 87 44 1 28 114 2 83 8.10e-11 64.3
MsG0380014573.01.T01 AT3G13190 33.108 296 105 7 300 592 93 298 1.13e-19 90.9
MsG0380014573.01.T01 AT3G13190 43.678 87 44 1 28 114 2 83 8.10e-11 64.3

Find 120 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGTTTGGTGACAAATTA+TGG 0.127940 3:+56651663 MsG0380014573.01.T01:three_prime_UTR
GAAATTACTTGCTTTGAAAA+AGG 0.226698 3:+56650356 MsG0380014573.01.T01:CDS
GTGATTCTTCAAAACTCTTC+AGG 0.253722 3:-56646395 None:intergenic
AATCATCTCCTCAGCATTAT+AGG 0.284814 3:+56651345 MsG0380014573.01.T01:CDS
AAAAGAGCTGAACAAGTTAA+AGG 0.285147 3:+56649804 MsG0380014573.01.T01:CDS
GATAGAGATGTGTTTGAAAA+TGG 0.297959 3:-56646302 None:intergenic
GTTCTTTCACTAGAGAGTTT+TGG 0.299186 3:+56649753 MsG0380014573.01.T01:intron
GGACATGCATTATATGTAAA+TGG 0.299725 3:+56651685 MsG0380014573.01.T01:three_prime_UTR
AAAGCTGCTGTGTCTCTATT+TGG 0.302297 3:+56647590 MsG0380014573.01.T01:CDS
ACCTCAGCAGAATAAGCTTT+TGG 0.303574 3:-56647653 None:intergenic
TTTCATGTCAGCTAATTTAT+CGG 0.305879 3:-56651072 None:intergenic
CCGCCGTGCTTCCTCAGTTT+CGG 0.320227 3:-56650781 None:intergenic
TCGAAGAAAATTAATATTAG+TGG 0.333342 3:+56651443 MsG0380014573.01.T01:CDS
AACACAGGAGGCCTTGAAAA+AGG 0.341599 3:+56651199 MsG0380014573.01.T01:CDS
TCAAATCATCGACTGTCCTT+TGG 0.346505 3:-56649885 None:intergenic
TAAAACTTATTACTGAATCT+AGG 0.353268 3:+56649917 MsG0380014573.01.T01:CDS
ATTGTATGGTGTTAATAGTT+TGG 0.355345 3:+56651650 MsG0380014573.01.T01:three_prime_UTR
TATCTTAGATCTAAATCTTA+AGG 0.355565 3:-56647466 None:intergenic
CGCAATTTCATTCATTGTCT+CGG 0.364944 3:-56650421 None:intergenic
GAGAGCCAGTAGCAGTTTGC+CGG 0.372052 3:-56647505 None:intergenic
CTTAGATTCTTCAGCCGAAC+AGG 0.377156 3:-56650709 None:intergenic
ATAGTTTGGTGACAAATTAT+GGG 0.378834 3:+56651664 MsG0380014573.01.T01:three_prime_UTR
CAAATCATCGACTGTCCTTT+GGG 0.385506 3:-56649884 None:intergenic
TTCCGATGACATCTGTGTTT+CGG 0.387578 3:-56651324 None:intergenic
CTGATGGAGCAAACGGTGCC+TGG 0.387841 3:+56650001 MsG0380014573.01.T01:CDS
GGATCTGCTTCTTATTTGCC+TGG 0.393498 3:+56651503 MsG0380014573.01.T01:CDS
GCTGAAGAATCTAAGGTTAG+AGG 0.403747 3:+56650717 MsG0380014573.01.T01:CDS
CTCTGTGAAAACTGTTACTT+CGG 0.404144 3:+56650488 MsG0380014573.01.T01:CDS
CTGTTCGGCTGAAGAATCTA+AGG 0.404534 3:+56650710 MsG0380014573.01.T01:CDS
TGCTTCTTCCAATGCAAGCT+TGG 0.405983 3:-56650859 None:intergenic
GAAAGAACATTCTGAGTTGA+AGG 0.406873 3:+56650611 MsG0380014573.01.T01:CDS
TTTGAAGAATCACCTTTGTA+AGG 0.408459 3:+56646405 MsG0380014573.01.T01:five_prime_UTR
AGCTGACACTCTTGCATTCG+AGG 0.408737 3:-56650127 None:intergenic
CCCAACTGTGGATTCCAATT+CGG 0.409056 3:-56650643 None:intergenic
GTCTGAGCTCGAAGCCTGTT+CGG 0.418955 3:+56650695 MsG0380014573.01.T01:CDS
ACTGTTACTTCGGAGCTTGA+TGG 0.425760 3:+56650498 MsG0380014573.01.T01:CDS
TGCGGCTCTGCATACAGAAA+TGG 0.431425 3:+56650440 MsG0380014573.01.T01:CDS
AAAATCCGGCAAACTGCTAC+TGG 0.432590 3:+56647500 MsG0380014573.01.T01:CDS
AAAAGAAATTTCAGCTGTAA+AGG 0.450558 3:+56650215 MsG0380014573.01.T01:CDS
AAGCTCTTGTGGAGCTTGAA+AGG 0.450937 3:+56649860 MsG0380014573.01.T01:CDS
GTGTCAATCTCTCCAACCTC+TGG 0.455117 3:-56647545 None:intergenic
GCAAACAAAGCTAGCATATG+TGG 0.459076 3:+56650248 MsG0380014573.01.T01:CDS
AGGGTGAGCTTCGAAGGTGG+CGG 0.468730 3:+56651255 MsG0380014573.01.T01:CDS
AGCAGCAAAGAAAGCGGTTG+AGG 0.474306 3:+56651235 MsG0380014573.01.T01:CDS
TACATGAAGTTGCGTCTCCT+TGG 0.480195 3:-56649776 None:intergenic
TCCAATGTTGTACGAGGAGG+TGG 0.492938 3:-56651386 None:intergenic
AAACAAAAGATCGTCTGACT+TGG 0.493337 3:+56650464 MsG0380014573.01.T01:CDS
AGCTCTTGTGGAGCTTGAAA+GGG 0.495752 3:+56649861 MsG0380014573.01.T01:CDS
AGATATGAAAACTGCAACAC+AGG 0.498887 3:+56651184 MsG0380014573.01.T01:CDS
CGAAACTGAGGAAGCACGGC+GGG 0.499299 3:+56650782 MsG0380014573.01.T01:CDS
TGATATTAAGCTTTCATGAC+TGG 0.499587 3:+56651764 MsG0380014573.01.T01:three_prime_UTR
AGAAGCTGAAAATGCAATGA+AGG 0.500269 3:+56650164 MsG0380014573.01.T01:CDS
AAAACTTATTACTGAATCTA+GGG 0.504876 3:+56649918 MsG0380014573.01.T01:CDS
AGCTTCACAACAAACTATAC+AGG 0.508704 3:-56651533 None:intergenic
TATTACTGAATCTAGGGAGT+TGG 0.510737 3:+56649924 MsG0380014573.01.T01:CDS
AAAAGCAATATTGTTGAGGA+TGG 0.511312 3:+56651482 MsG0380014573.01.T01:CDS
AGAAAACACTCTTAGAAGCT+TGG 0.512858 3:+56650554 MsG0380014573.01.T01:CDS
GCATCTACATCGTCAGAATC+CGG 0.512989 3:+56650990 MsG0380014573.01.T01:CDS
CGGTTGAGGGTGAGCTTCGA+AGG 0.513525 3:+56651249 MsG0380014573.01.T01:CDS
TAAATTAGCTGACATGAAAG+TGG 0.513758 3:+56651076 MsG0380014573.01.T01:CDS
GTGTTTGAAAATGGAAAAGC+TGG 0.518968 3:-56646293 None:intergenic
GGGTGAGCTTCGAAGGTGGC+GGG 0.519859 3:+56651256 MsG0380014573.01.T01:CDS
TACTAAGGCTCAAGCTCTTG+TGG 0.520283 3:+56649849 MsG0380014573.01.T01:CDS
TCCGAATTGGAATCCACAGT+TGG 0.526090 3:+56650642 MsG0380014573.01.T01:CDS
AAAGAACGCTGAAACTACTA+AGG 0.527676 3:+56649834 MsG0380014573.01.T01:CDS
CAAAAGTACGGTGACTCTGA+TGG 0.536667 3:+56649985 MsG0380014573.01.T01:CDS
AACAGACTGAAAAGGTGGGC+TGG 0.541022 3:-56647567 None:intergenic
CCGAATTGGAATCCACAGTT+GGG 0.544037 3:+56650643 MsG0380014573.01.T01:CDS
CTTAAGGACAGGTCTTTCCC+CGG 0.544529 3:-56647627 None:intergenic
CCCAGTCTAAAACCAGAGGT+TGG 0.551359 3:+56647533 MsG0380014573.01.T01:CDS
AGATCTGAGGAAAACCCGTC+AGG 0.551398 3:+56650092 MsG0380014573.01.T01:CDS
TGAAGCTACCAAGCTTGCAT+TGG 0.554079 3:+56650851 MsG0380014573.01.T01:CDS
CGATATTGTCATTGCAGCAC+CGG 0.554335 3:-56651009 None:intergenic
TGATGATTTGTGTGTAGTTG+AGG 0.555687 3:+56651581 MsG0380014573.01.T01:three_prime_UTR
ATCACAGCAACAGCAAGCAT+TGG 0.557927 3:+56650272 MsG0380014573.01.T01:CDS
GGATGAATCGTATTCCTGAC+GGG 0.561805 3:-56650106 None:intergenic
GCAGCAAAGAAAGCGGTTGA+GGG 0.562121 3:+56651236 MsG0380014573.01.T01:CDS
GGTGACTCTGATGGAGCAAA+CGG 0.565178 3:+56649994 MsG0380014573.01.T01:CDS
TCCACCTCCTCGTACAACAT+TGG 0.565733 3:+56651385 MsG0380014573.01.T01:CDS
GCAGCTTTAACAGACTGAAA+AGG 0.569244 3:-56647575 None:intergenic
AAAGTTGGAGGCAACTCAGA+AGG 0.575379 3:+56651154 MsG0380014573.01.T01:CDS
GAAGAAAAGCAATATTGTTG+AGG 0.577100 3:+56651478 MsG0380014573.01.T01:CDS
AGTGGATGCTGCGAAAGCAC+AGG 0.579774 3:+56651094 MsG0380014573.01.T01:CDS
AAAATATATTTACCTTACAA+AGG 0.579960 3:-56646417 None:intergenic
ATATTAGTGGTATCTTTCAA+AGG 0.583937 3:+56651456 MsG0380014573.01.T01:CDS
AGGAGTTCGAGTCTCTAAAA+CGG 0.584086 3:+56651036 MsG0380014573.01.T01:CDS
GCTGTGTCTCTATTTGGTGA+AGG 0.587275 3:+56647596 MsG0380014573.01.T01:CDS
AGTCAGGCAAAACAAAAGTA+CGG 0.587853 3:+56649973 MsG0380014573.01.T01:CDS
GCTTTAACAGACTGAAAAGG+TGG 0.589140 3:-56647572 None:intergenic
AGGATGAATCGTATTCCTGA+CGG 0.591780 3:-56650107 None:intergenic
AGTTAGAAAATGCAGTTCAA+AGG 0.592541 3:+56650031 MsG0380014573.01.T01:CDS
AAGCGGCAGAAGCTGCAGCT+CGG 0.596772 3:+56651294 MsG0380014573.01.T01:CDS
AGCACAGGTAGAAGCTGTGA+AGG 0.598567 3:+56651109 MsG0380014573.01.T01:CDS
TAAGGTTAGAGGTGCATCTG+AGG 0.604601 3:+56650728 MsG0380014573.01.T01:CDS
CGAGACAATGAATGAAATTG+CGG 0.608177 3:+56650422 MsG0380014573.01.T01:CDS
GCCAAAAGCTTATTCTGCTG+AGG 0.610112 3:+56647652 MsG0380014573.01.T01:CDS
AGATTACAGTGCTAACTGAA+AGG 0.611910 3:+56650952 MsG0380014573.01.T01:CDS
AACTATACAGGATTCTCACC+AGG 0.615709 3:-56651521 None:intergenic
CTCTCCCAGTCTAAAACCAG+AGG 0.624022 3:+56647529 MsG0380014573.01.T01:CDS
GATTTAGATCTAAGATACAA+TGG 0.626073 3:+56647472 MsG0380014573.01.T01:exon
TTGAGGGTGAGCTTCGAAGG+TGG 0.626759 3:+56651252 MsG0380014573.01.T01:CDS
GTCTCTAAAACGGAAAGTTG+AGG 0.628832 3:+56651046 MsG0380014573.01.T01:CDS
TGTTAATGAAGTGTGCTGGA+AGG 0.629758 3:+56651619 MsG0380014573.01.T01:three_prime_UTR
CATCCGAAACTGAGGAAGCA+CGG 0.630067 3:+56650778 MsG0380014573.01.T01:CDS
TGGAGCTTGAAAGGGCCCAA+AGG 0.633150 3:+56649869 MsG0380014573.01.T01:CDS
CTTGGTAGAGACTCTGAAGG+TGG 0.634968 3:+56650572 MsG0380014573.01.T01:CDS
TTCACTTCCAATGTTGTACG+AGG 0.636771 3:-56651392 None:intergenic
AGCCGAAACACAGATGTCAT+CGG 0.637623 3:+56651322 MsG0380014573.01.T01:CDS
ATGCTGCTAAACAAGATCTG+AGG 0.640074 3:+56650079 MsG0380014573.01.T01:CDS
TGCTGCAATGACAATATCGA+CGG 0.647577 3:+56651013 MsG0380014573.01.T01:CDS
TCAGTTAACATCCGAAACTG+AGG 0.648666 3:+56650770 MsG0380014573.01.T01:CDS
ACTTCCAATGTTGTACGAGG+AGG 0.662570 3:-56651389 None:intergenic
CTTTAACAGACTGAAAAGGT+GGG 0.663688 3:-56647571 None:intergenic
TGTGAAGGCTAGCGAAAACG+AGG 0.665471 3:+56651124 MsG0380014573.01.T01:CDS
TATGAAAACTGCAACACAGG+AGG 0.667826 3:+56651187 MsG0380014573.01.T01:CDS
GGCTGAAGCAGCAAAGAAAG+CGG 0.667928 3:+56651229 MsG0380014573.01.T01:CDS
GACATGCAGATTCCCAACTG+TGG 0.670611 3:-56650655 None:intergenic
AAGCTTGGTAGAGACTCTGA+AGG 0.694026 3:+56650569 MsG0380014573.01.T01:CDS
TGCAATGACAATATCGACGG+AGG 0.702839 3:+56651016 MsG0380014573.01.T01:CDS
CCGAAACTGAGGAAGCACGG+CGG 0.740064 3:+56650781 MsG0380014573.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAAAAAATATTACTT+TGG + Chr3:56649263-56649282 MsG0380014573.01.T01:intron 10.0%
!!! TAATATTGTTTACATTTTTT+GGG + Chr3:56646894-56646913 MsG0380014573.01.T01:intron 10.0%
!!! TGTTATTTCTATTAAAAAAT+GGG - Chr3:56648600-56648619 None:intergenic 10.0%
!!! TTTTATTAGTAATAACTTTT+CGG + Chr3:56648712-56648731 MsG0380014573.01.T01:intron 10.0%
!! AAAATATATTTACCTTACAA+AGG - Chr3:56646420-56646439 None:intergenic 15.0%
!! AAAGATATTAAATCTGTATT+TGG + Chr3:56648959-56648978 MsG0380014573.01.T01:intron 15.0%
!! AATAACATTAAGTAAAACTA+CGG + Chr3:56649091-56649110 MsG0380014573.01.T01:intron 15.0%
!! ACTTAATGTTATTATTTACA+TGG - Chr3:56649084-56649103 None:intergenic 15.0%
!! GTAGAAAAATTAAAATCTAT+TGG + Chr3:56651713-56651732 MsG0380014573.01.T01:three_prime_UTR 15.0%
!!! AAAAAATCAAAACTTTTAAG+AGG - Chr3:56649639-56649658 None:intergenic 15.0%
!!! ATAGATTTTAATTTTTCTAC+TGG - Chr3:56651713-56651732 None:intergenic 15.0%
!!! ATTATTGTGTAGTTTTTAAA+GGG + Chr3:56647045-56647064 MsG0380014573.01.T01:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + Chr3:56649367-56649386 MsG0380014573.01.T01:intron 15.0%
!!! CTGTTATTTCTATTAAAAAA+TGG - Chr3:56648601-56648620 None:intergenic 15.0%
!!! GTAATATTGTTTACATTTTT+TGG + Chr3:56646893-56646912 MsG0380014573.01.T01:intron 15.0%
!!! GTTATTTCTATTAAAAAATG+GGG - Chr3:56648599-56648618 None:intergenic 15.0%
!!! TATTATTGTGTAGTTTTTAA+AGG + Chr3:56647044-56647063 MsG0380014573.01.T01:intron 15.0%
!! AAAAAATTTGATACATGTTG+TGG - Chr3:56649523-56649542 None:intergenic 20.0%
!! AAAACTTATTACTGAATCTA+GGG + Chr3:56649918-56649937 MsG0380014573.01.T01:CDS 20.0%
!! AAACATATCCTAAAATTTAC+AGG - Chr3:56647766-56647785 None:intergenic 20.0%
!! AAATTATCCTAATCAACTAT+TGG + Chr3:56649229-56649248 MsG0380014573.01.T01:intron 20.0%
!! AATAGTTGATTAGGATAATT+TGG - Chr3:56649230-56649249 None:intergenic 20.0%
!! ACAATTAGAAACAAGATTTA+CGG + Chr3:56648911-56648930 MsG0380014573.01.T01:intron 20.0%
!! ATATAAAAGAAGCTATTGAT+AGG + Chr3:56647119-56647138 MsG0380014573.01.T01:intron 20.0%
!! CTAACTTTATGCTTATAATA+GGG + Chr3:56648126-56648145 MsG0380014573.01.T01:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG + Chr3:56649293-56649312 MsG0380014573.01.T01:intron 20.0%
!! GTTTAGATAAAAAATGCAAT+AGG - Chr3:56648776-56648795 None:intergenic 20.0%
!! TAAAACTTATTACTGAATCT+AGG + Chr3:56649917-56649936 MsG0380014573.01.T01:CDS 20.0%
!! TATCTTAGATCTAAATCTTA+AGG - Chr3:56647469-56647488 None:intergenic 20.0%
!! TCGAAGAAAATTAATATTAG+TGG + Chr3:56651443-56651462 MsG0380014573.01.T01:CDS 20.0%
!! TCTAACTTTATGCTTATAAT+AGG + Chr3:56648125-56648144 MsG0380014573.01.T01:intron 20.0%
!! TGTAACATAGTATTAATTGA+AGG + Chr3:56649292-56649311 MsG0380014573.01.T01:intron 20.0%
!!! CAACAAATAATCTTTTCAAT+TGG - Chr3:56647299-56647318 None:intergenic 20.0%
!!! CAACTTAATATTTTAACCAA+AGG - Chr3:56646833-56646852 None:intergenic 20.0%
!!! GTTGACTTTATTTTATCTTT+TGG - Chr3:56647864-56647883 None:intergenic 20.0%
!!! TAATCTTTTCAATTGGAATT+TGG - Chr3:56647292-56647311 None:intergenic 20.0%
!!! TGTAAATTTTAGGATATGTT+TGG + Chr3:56647765-56647784 MsG0380014573.01.T01:intron 20.0%
!!! TTTTTCTATAGAAAGTGAAA+AGG - Chr3:56648276-56648295 None:intergenic 20.0%
! AAAACAATTTATAGCTTACG+TGG - Chr3:56647892-56647911 None:intergenic 25.0%
! AAAAGAAATTTCAGCTGTAA+AGG + Chr3:56650215-56650234 MsG0380014573.01.T01:CDS 25.0%
! AAACAAACCAATAGTTGATT+AGG - Chr3:56649239-56649258 None:intergenic 25.0%
! AACATAAAAGAATGTTGACA+TGG - Chr3:56648460-56648479 None:intergenic 25.0%
! AATAACCTGAAAATAGCTTA+TGG + Chr3:56647939-56647958 MsG0380014573.01.T01:intron 25.0%
! AATAAGATTACATAGTTCAG+TGG - Chr3:56649663-56649682 None:intergenic 25.0%
! AATTAGAAACAAGATTTACG+GGG + Chr3:56648913-56648932 MsG0380014573.01.T01:intron 25.0%
! AGATACACATAAAAAGTCAA+GGG - Chr3:56646719-56646738 None:intergenic 25.0%
! ATATTAGTGGTATCTTTCAA+AGG + Chr3:56651456-56651475 MsG0380014573.01.T01:CDS 25.0%
! ATGAAAACCACAAAATGAAA+AGG - Chr3:56649729-56649748 None:intergenic 25.0%
! ATGAGATATTCCTACTTAAA+TGG - Chr3:56649006-56649025 None:intergenic 25.0%
! ATTTAAGTAGGAATATCTCA+TGG + Chr3:56649005-56649024 MsG0380014573.01.T01:intron 25.0%
! CAATTAGAAACAAGATTTAC+GGG + Chr3:56648912-56648931 MsG0380014573.01.T01:intron 25.0%
! CCTGAAAATTCTAATGTATT+GGG + Chr3:56646947-56646966 MsG0380014573.01.T01:intron 25.0%
! CTATATCAGTATCAGAAAAT+CGG - Chr3:56648204-56648223 None:intergenic 25.0%
! CTTGTACAAATCTTTGATAA+TGG - Chr3:56649472-56649491 None:intergenic 25.0%
! GTACAGAGTATAGATAATTT+AGG - Chr3:56648865-56648884 None:intergenic 25.0%
! GTTTAACAAGCATTATTAGT+TGG + Chr3:56646998-56647017 MsG0380014573.01.T01:intron 25.0%
! TACATGGAAGATATAAAACA+TGG - Chr3:56649068-56649087 None:intergenic 25.0%
! TCCTGAAAATTCTAATGTAT+TGG + Chr3:56646946-56646965 MsG0380014573.01.T01:intron 25.0%
! TCGGAAAGAAAAAAAAATAC+AGG - Chr3:56648185-56648204 None:intergenic 25.0%
! TGAATATCAAATAGAAGAGT+AGG - Chr3:56648654-56648673 None:intergenic 25.0%
! TTATCAAAGATTTGTACAAG+TGG + Chr3:56649472-56649491 MsG0380014573.01.T01:intron 25.0%
! TTTCATACTGAAAAAACCTT+TGG + Chr3:56646814-56646833 MsG0380014573.01.T01:intron 25.0%
! TTTCATGTCAGCTAATTTAT+CGG - Chr3:56651075-56651094 None:intergenic 25.0%
! TTTCTATAGAAAAACTGCAA+CGG + Chr3:56648282-56648301 MsG0380014573.01.T01:intron 25.0%
!! AATAGTTTGGTGACAAATTA+TGG + Chr3:56651663-56651682 MsG0380014573.01.T01:three_prime_UTR 25.0%
!! AGACAATTTAAGACCTAATT+TGG - Chr3:56648051-56648070 None:intergenic 25.0%
!! AGTATTTTGTGTTTTCATGA+TGG + Chr3:56646524-56646543 MsG0380014573.01.T01:intron 25.0%
!! ATAGTTTGGTGACAAATTAT+GGG + Chr3:56651664-56651683 MsG0380014573.01.T01:three_prime_UTR 25.0%
!! ATTATCTGAAGTTGTAATTG+GGG + Chr3:56648814-56648833 MsG0380014573.01.T01:intron 25.0%
!! ATTGTATGGTGTTAATAGTT+TGG + Chr3:56651650-56651669 MsG0380014573.01.T01:three_prime_UTR 25.0%
!! ATTTCTTTTTGGATTGTTCA+AGG - Chr3:56650341-56650360 None:intergenic 25.0%
!! ATTTTCTCCTTTTCATTTTG+TGG + Chr3:56649719-56649738 MsG0380014573.01.T01:intron 25.0%
!! CAAAGCAAGTAATTTCTTTT+TGG - Chr3:56650352-56650371 None:intergenic 25.0%
!! GATTATCTGAAGTTGTAATT+GGG + Chr3:56648813-56648832 MsG0380014573.01.T01:intron 25.0%
!! GATTTAGATCTAAGATACAA+TGG + Chr3:56647472-56647491 MsG0380014573.01.T01:exon 25.0%
!! GTATTTTGTGTTTTCATGAT+GGG + Chr3:56646525-56646544 MsG0380014573.01.T01:intron 25.0%
!! TGATTATCTGAAGTTGTAAT+TGG + Chr3:56648812-56648831 MsG0380014573.01.T01:intron 25.0%
!! TTCAAGACTTTTTGTGATTT+CGG - Chr3:56650391-56650410 None:intergenic 25.0%
!! TTGTATTAGTATGTTTTCTC+AGG + Chr3:56647687-56647706 MsG0380014573.01.T01:intron 25.0%
!! TTTCTTTTTGGATTGTTCAA+GGG - Chr3:56650340-56650359 None:intergenic 25.0%
!!! AGTTTTTAAAGGGTCTTAAT+TGG + Chr3:56647055-56647074 MsG0380014573.01.T01:intron 25.0%
!!! ATCTGTATTTGGTTTTAAGA+TGG + Chr3:56648970-56648989 MsG0380014573.01.T01:intron 25.0%
!!! ATCTTGTTTCTAATTGTCAT+AGG - Chr3:56648908-56648927 None:intergenic 25.0%
!!! GAAATTACTTGCTTTGAAAA+AGG + Chr3:56650356-56650375 MsG0380014573.01.T01:CDS 25.0%
!!! TCTTCTACTATGTTTTTAAC+AGG + Chr3:56647430-56647449 MsG0380014573.01.T01:intron 25.0%
!!! TGGTGTTATTTTCATTTTGA+AGG + Chr3:56646786-56646805 MsG0380014573.01.T01:intron 25.0%
!!! TTCAAAATGAATGTCACTTT+CGG - Chr3:56649356-56649375 None:intergenic 25.0%
!!! TTTATTGCTTTTGAGAATCT+GGG + Chr3:56646495-56646514 MsG0380014573.01.T01:intron 25.0%
AAAAGAGCTGAACAAGTTAA+AGG + Chr3:56649804-56649823 MsG0380014573.01.T01:CDS 30.0%
AAAAGCAATATTGTTGAGGA+TGG + Chr3:56651482-56651501 MsG0380014573.01.T01:CDS 30.0%
AAAGGAACCATGATAAAGTA+AGG - Chr3:56646578-56646597 None:intergenic 30.0%
AAAGTCAAGATAGACATGAT+TGG - Chr3:56647236-56647255 None:intergenic 30.0%
AAGTTATCATAGAGAGCTTA+TGG + Chr3:56647915-56647934 MsG0380014573.01.T01:intron 30.0%
ACAAAAAACAACAGAAGTTG+CGG + Chr3:56647735-56647754 MsG0380014573.01.T01:intron 30.0%
AGCATATGAAAAGAAACACA+AGG - Chr3:56648628-56648647 None:intergenic 30.0%
AGGCTGAAAGTTCTATTATA+AGG - Chr3:56648756-56648775 None:intergenic 30.0%
AGTTAGAAAATGCAGTTCAA+AGG + Chr3:56650031-56650050 MsG0380014573.01.T01:CDS 30.0%
ATTAAAAAATGGGGTTCAAC+AGG - Chr3:56648590-56648609 None:intergenic 30.0%
CAAATAAGTCGATCCAAATT+AGG + Chr3:56648035-56648054 MsG0380014573.01.T01:intron 30.0%
CAGATACACATAAAAAGTCA+AGG - Chr3:56646720-56646739 None:intergenic 30.0%
CAGTAGTATTACAGATTGTA+TGG + Chr3:56647206-56647225 MsG0380014573.01.T01:intron 30.0%
CATACAATCTGTAATACTAC+TGG - Chr3:56647208-56647227 None:intergenic 30.0%
GAAAAAACTGAAAGAAGCAA+CGG + Chr3:56650884-56650903 MsG0380014573.01.T01:CDS 30.0%
GAAACCACAAAACAAAACAA+AGG - Chr3:56646596-56646615 None:intergenic 30.0%
GAAGAAAAGCAATATTGTTG+AGG + Chr3:56651478-56651497 MsG0380014573.01.T01:CDS 30.0%
GAATATCTCATGGATATGAT+AGG + Chr3:56649015-56649034 MsG0380014573.01.T01:intron 30.0%
GATAGAGATGTGTTTGAAAA+TGG - Chr3:56646305-56646324 None:intergenic 30.0%
GATATTAAGCTTTCATGACT+TGG + Chr3:56651765-56651784 MsG0380014573.01.T01:three_prime_UTR 30.0%
GGACATGCATTATATGTAAA+TGG + Chr3:56651685-56651704 MsG0380014573.01.T01:three_prime_UTR 30.0%
TAAATTAGCTGACATGAAAG+TGG + Chr3:56651076-56651095 MsG0380014573.01.T01:CDS 30.0%
TTTGAAGAATCACCTTTGTA+AGG + Chr3:56646405-56646424 MsG0380014573.01.T01:five_prime_UTR 30.0%
! ATTTTCTAACTCTTCTTTCC+AGG - Chr3:56650022-56650041 None:intergenic 30.0%
! ATTTTGTTAATGAAGTGTGC+TGG + Chr3:56651615-56651634 MsG0380014573.01.T01:three_prime_UTR 30.0%
! CATTCTTTTATGTTTCAGCA+TGG + Chr3:56648466-56648485 MsG0380014573.01.T01:intron 30.0%
! CCCAATACATTAGAATTTTC+AGG - Chr3:56646950-56646969 None:intergenic 30.0%
! TCAAGACTTTTTGTGATTTC+GGG - Chr3:56650390-56650409 None:intergenic 30.0%
! TCATTTTCATGTTCTGTTTG+CGG + Chr3:56646614-56646633 MsG0380014573.01.T01:intron 30.0%
! TTTTGAATCCTATAATGCTG+AGG - Chr3:56651356-56651375 None:intergenic 30.0%
!! CTACTATGTTTTTAACAGGT+TGG + Chr3:56647434-56647453 MsG0380014573.01.T01:intron 30.0%
!! CTTTATTGCTTTTGAGAATC+TGG + Chr3:56646494-56646513 MsG0380014573.01.T01:intron 30.0%
!! TTTTAAAGGGTCTTAATTGG+TGG + Chr3:56647058-56647077 MsG0380014573.01.T01:intron 30.0%
!!! AAACGAGGTTTTGAAAAAGT+TGG + Chr3:56651139-56651158 MsG0380014573.01.T01:CDS 30.0%
!!! AATAAGCTTTTGGCTTCTTA+AGG - Chr3:56647646-56647665 None:intergenic 30.0%
!!! GGAAGGAAAGTTTTATTGTA+TGG + Chr3:56651636-56651655 MsG0380014573.01.T01:three_prime_UTR 30.0%
!!! TAACTTGTTCAGCTCTTTTT+CGG - Chr3:56649803-56649822 None:intergenic 30.0%
!!! TCTGTCGTTTTAAACATACT+TGG + Chr3:56646652-56646671 MsG0380014573.01.T01:intron 30.0%
AAAAAGTCTTGAAGCACAGT+TGG + Chr3:56650398-56650417 MsG0380014573.01.T01:CDS 35.0%
AAACAAAAGATCGTCTGACT+TGG + Chr3:56650464-56650483 MsG0380014573.01.T01:CDS 35.0%
AAAGAACGCTGAAACTACTA+AGG + Chr3:56649834-56649853 MsG0380014573.01.T01:CDS 35.0%
AAAGATTTGTACAAGTGGTG+TGG + Chr3:56649477-56649496 MsG0380014573.01.T01:intron 35.0%
AATCATCTCCTCAGCATTAT+AGG + Chr3:56651345-56651364 MsG0380014573.01.T01:CDS 35.0%
AGAAAACACTCTTAGAAGCT+TGG + Chr3:56650554-56650573 MsG0380014573.01.T01:CDS 35.0%
AGAAGCTGAAAATGCAATGA+AGG + Chr3:56650164-56650183 MsG0380014573.01.T01:CDS 35.0%
AGATATGAAAACTGCAACAC+AGG + Chr3:56651184-56651203 MsG0380014573.01.T01:CDS 35.0%
AGATTACAGTGCTAACTGAA+AGG + Chr3:56650952-56650971 MsG0380014573.01.T01:CDS 35.0%
AGCTTCACAACAAACTATAC+AGG - Chr3:56651536-56651555 None:intergenic 35.0%
AGTCAGGCAAAACAAAAGTA+CGG + Chr3:56649973-56649992 MsG0380014573.01.T01:CDS 35.0%
ATACAATGGTCGCAAAAATC+CGG + Chr3:56647486-56647505 MsG0380014573.01.T01:exon 35.0%
ATTGCACACAGATTAAGGAA+TGG + Chr3:56649173-56649192 MsG0380014573.01.T01:intron 35.0%
CGAGACAATGAATGAAATTG+CGG + Chr3:56650422-56650441 MsG0380014573.01.T01:CDS 35.0%
CGCAATTTCATTCATTGTCT+CGG - Chr3:56650424-56650443 None:intergenic 35.0%
CTTTAACAGACTGAAAAGGT+GGG - Chr3:56647574-56647593 None:intergenic 35.0%
GAAAGAAGAAAGAGTGAGTT+AGG - Chr3:56648382-56648401 None:intergenic 35.0%
GAGCTAATGAAAACAGCTTA+TGG - Chr3:56647970-56647989 None:intergenic 35.0%
GTGATTCTTCAAAACTCTTC+AGG - Chr3:56646398-56646417 None:intergenic 35.0%
GTGTATATCACACAGATACA+AGG - Chr3:56648530-56648549 None:intergenic 35.0%
GTGTTTGAAAATGGAAAAGC+TGG - Chr3:56646296-56646315 None:intergenic 35.0%
TATTACTGAATCTAGGGAGT+TGG + Chr3:56649924-56649943 MsG0380014573.01.T01:CDS 35.0%
TCTTAATTGGTGGAAGATTG+TGG + Chr3:56647068-56647087 MsG0380014573.01.T01:intron 35.0%
TGAGCTACCTTACTTTATCA+TGG + Chr3:56646568-56646587 MsG0380014573.01.T01:intron 35.0%
TGCATTCTAAGCTTGAAAGA+AGG - Chr3:56649700-56649719 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG - Chr3:56649173-56649192 None:intergenic 35.0%
! CTCTGTGAAAACTGTTACTT+CGG + Chr3:56650488-56650507 MsG0380014573.01.T01:CDS 35.0%
! GAAAGAACATTCTGAGTTGA+AGG + Chr3:56650611-56650630 MsG0380014573.01.T01:CDS 35.0%
! GTTCTTTCACTAGAGAGTTT+TGG + Chr3:56649753-56649772 MsG0380014573.01.T01:intron 35.0%
! TGATGATTTGTGTGTAGTTG+AGG + Chr3:56651581-56651600 MsG0380014573.01.T01:three_prime_UTR 35.0%
! TGTGATGTTGCCATTTAAGT+AGG + Chr3:56648993-56649012 MsG0380014573.01.T01:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + Chr3:56649393-56649412 MsG0380014573.01.T01:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - Chr3:56649412-56649393 None:intergenic 35.0%
!! CATGTCCATAAGCTATTTTC+AGG - Chr3:56647947-56647966 None:intergenic 35.0%
!! GTTGCTGATTCAGTTAAAGA+TGG + Chr3:56646468-56646487 MsG0380014573.01.T01:intron 35.0%
!!! GGTTCCTTTGTTTTGTTTTG+TGG + Chr3:56646589-56646608 MsG0380014573.01.T01:intron 35.0%
!!! TTTGTTTTGCAACACCACAA+AGG - Chr3:56647720-56647739 None:intergenic 35.0%
AAAGCTGCTGTGTCTCTATT+TGG + Chr3:56647590-56647609 MsG0380014573.01.T01:CDS 40.0%
AACAGAAGCTGCAAAAAGTC+AGG + Chr3:56649957-56649976 MsG0380014573.01.T01:CDS 40.0%
AACTATACAGGATTCTCACC+AGG - Chr3:56651524-56651543 None:intergenic 40.0%
AAGTGAAAAGGCGAGATGTA+AGG - Chr3:56648264-56648283 None:intergenic 40.0%
AATGTTGACATGGCAGTGAA+TGG - Chr3:56648450-56648469 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG + Chr3:56649168-56649187 MsG0380014573.01.T01:intron 40.0%
AGGAGTGAGAATCTATGTAG+AGG - Chr3:56648407-56648426 None:intergenic 40.0%
AGGATGAATCGTATTCCTGA+CGG - Chr3:56650110-56650129 None:intergenic 40.0%
AGTGAAAAGGCGAGATGTAA+GGG - Chr3:56648263-56648282 None:intergenic 40.0%
AGTGAGAATCTATGTAGAGG+GGG - Chr3:56648404-56648423 None:intergenic 40.0%
ATGCTGCTAAACAAGATCTG+AGG + Chr3:56650079-56650098 MsG0380014573.01.T01:CDS 40.0%
CAGATACAAGGAAGACATGA+TGG - Chr3:56648518-56648537 None:intergenic 40.0%
GAAGGAAAAAGAGTCCGAAT+TGG + Chr3:56650629-56650648 MsG0380014573.01.T01:CDS 40.0%
GAATACTTATGCATGCTGGT+AGG + Chr3:56648006-56648025 MsG0380014573.01.T01:intron 40.0%
GAGTGAGAATCTATGTAGAG+GGG - Chr3:56648405-56648424 None:intergenic 40.0%
GCAAACAAAGCTAGCATATG+TGG + Chr3:56650248-56650267 MsG0380014573.01.T01:CDS 40.0%
GCTTTAACAGACTGAAAAGG+TGG - Chr3:56647575-56647594 None:intergenic 40.0%
GGAGTGAGAATCTATGTAGA+GGG - Chr3:56648406-56648425 None:intergenic 40.0%
GTTCTTGAATCGAATGAAGC+AGG - Chr3:56649046-56649065 None:intergenic 40.0%
TATGAAAACTGCAACACAGG+AGG + Chr3:56651187-56651206 MsG0380014573.01.T01:CDS 40.0%
TCACGAATACTTATGCATGC+TGG + Chr3:56648002-56648021 MsG0380014573.01.T01:intron 40.0%
TCAGTTAACATCCGAAACTG+AGG + Chr3:56650770-56650789 MsG0380014573.01.T01:CDS 40.0%
TCTCAGGTAGAAATCCTTTG+TGG + Chr3:56647703-56647722 MsG0380014573.01.T01:intron 40.0%
TGCTGCAATGACAATATCGA+CGG + Chr3:56651013-56651032 MsG0380014573.01.T01:CDS 40.0%
TGTTAATGAAGTGTGCTGGA+AGG + Chr3:56651619-56651638 MsG0380014573.01.T01:three_prime_UTR 40.0%
TTCACTTCCAATGTTGTACG+AGG - Chr3:56651395-56651414 None:intergenic 40.0%
TTCCGATGACATCTGTGTTT+CGG - Chr3:56651327-56651346 None:intergenic 40.0%
TTGTGTGCAGAACATTCTTC+TGG - Chr3:56648235-56648254 None:intergenic 40.0%
! ACCTCAGCAGAATAAGCTTT+TGG - Chr3:56647656-56647675 None:intergenic 40.0%
! AGGAGTTCGAGTCTCTAAAA+CGG + Chr3:56651036-56651055 MsG0380014573.01.T01:CDS 40.0%
! ATCTGAAGTTGTAATTGGGG+TGG + Chr3:56648817-56648836 MsG0380014573.01.T01:intron 40.0%
! CAAATCATCGACTGTCCTTT+GGG - Chr3:56649887-56649906 None:intergenic 40.0%
! CGGTGAGTCCTGTAAATTTT+AGG + Chr3:56647755-56647774 MsG0380014573.01.T01:intron 40.0%
! GCAGCTTTAACAGACTGAAA+AGG - Chr3:56647578-56647597 None:intergenic 40.0%
! GCTGAAGAATCTAAGGTTAG+AGG + Chr3:56650717-56650736 MsG0380014573.01.T01:CDS 40.0%
! GTTTGTGTAGCATTGAAGTC+TGG - Chr3:56648327-56648346 None:intergenic 40.0%
! TCAAATCATCGACTGTCCTT+TGG - Chr3:56649888-56649907 None:intergenic 40.0%
!! CTGTAATACTACTGGCTCTT+AGG - Chr3:56647200-56647219 None:intergenic 40.0%
!! GTCTCTAAAACGGAAAGTTG+AGG + Chr3:56651046-56651065 MsG0380014573.01.T01:CDS 40.0%
!!! AGCGACACTCATTTTGAAAC+GGG + Chr3:56649394-56649413 MsG0380014573.01.T01:intron 40.0%
!!! CGAGGTTTTGAAAAAGTTGG+AGG + Chr3:56651142-56651161 MsG0380014573.01.T01:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr3:56649143-56649162 None:intergenic 40.0%
!!! TTTGGTGAAGGTGCTTTTTC+CGG + Chr3:56647608-56647627 MsG0380014573.01.T01:CDS 40.0%
AAAATCCGGCAAACTGCTAC+TGG + Chr3:56647500-56647519 MsG0380014573.01.T01:CDS 45.0%
AAAGAGTGAGTTAGGCGAGT+GGG - Chr3:56648374-56648393 None:intergenic 45.0%
AAAGTTGGAGGCAACTCAGA+AGG + Chr3:56651154-56651173 MsG0380014573.01.T01:CDS 45.0%
AACACAGGAGGCCTTGAAAA+AGG + Chr3:56651199-56651218 MsG0380014573.01.T01:CDS 45.0%
AAGCTCTTGTGGAGCTTGAA+AGG + Chr3:56649860-56649879 MsG0380014573.01.T01:CDS 45.0%
AAGCTTGGTAGAGACTCTGA+AGG + Chr3:56650569-56650588 MsG0380014573.01.T01:CDS 45.0%
ACACAAACTTCTTTGCCCGA+AGG + Chr3:56648339-56648358 MsG0380014573.01.T01:intron 45.0%
ACTTCCAATGTTGTACGAGG+AGG - Chr3:56651392-56651411 None:intergenic 45.0%
AGAGTGCAGACGGTGTTTAA+TGG + Chr3:56648153-56648172 MsG0380014573.01.T01:intron 45.0%
AGCCGAAACACAGATGTCAT+CGG + Chr3:56651322-56651341 MsG0380014573.01.T01:CDS 45.0%
AGCTCTTGTGGAGCTTGAAA+GGG + Chr3:56649861-56649880 MsG0380014573.01.T01:CDS 45.0%
AGTTTCTTCCCATTGCTAGC+AGG + Chr3:56648080-56648099 MsG0380014573.01.T01:intron 45.0%
CCCAACTGTGGATTCCAATT+CGG - Chr3:56650646-56650665 None:intergenic 45.0%
CCGAATTGGAATCCACAGTT+GGG + Chr3:56650643-56650662 MsG0380014573.01.T01:CDS 45.0%
CGATATTGTCATTGCAGCAC+CGG - Chr3:56651012-56651031 None:intergenic 45.0%
CTGTTCGGCTGAAGAATCTA+AGG + Chr3:56650710-56650729 MsG0380014573.01.T01:CDS 45.0%
CTTAGATTCTTCAGCCGAAC+AGG - Chr3:56650712-56650731 None:intergenic 45.0%
GACATGGCAGTGAATGGAAA+CGG - Chr3:56648444-56648463 None:intergenic 45.0%
GAGCTTTCAGCTGTGCAAAT+AGG - Chr3:56646928-56646947 None:intergenic 45.0%
GCATCTACATCGTCAGAATC+CGG + Chr3:56650990-56651009 MsG0380014573.01.T01:CDS 45.0%
GCCAAAAGCTTATTCTGCTG+AGG + Chr3:56647652-56647671 MsG0380014573.01.T01:CDS 45.0%
GGAGCGAGAACAGAAAAAAG+CGG + Chr3:56651277-56651296 MsG0380014573.01.T01:CDS 45.0%
GGATGAATCGTATTCCTGAC+GGG - Chr3:56650109-56650128 None:intergenic 45.0%
GGGTGTCTCAACAATGTTCT+TGG + Chr3:56648933-56648952 MsG0380014573.01.T01:intron 45.0%
GGTGGAAGATTGTGGAATCA+TGG + Chr3:56647076-56647095 MsG0380014573.01.T01:intron 45.0%
TACATGAAGTTGCGTCTCCT+TGG - Chr3:56649779-56649798 None:intergenic 45.0%
TACTAAGGCTCAAGCTCTTG+TGG + Chr3:56649849-56649868 MsG0380014573.01.T01:CDS 45.0%
TCCGAATTGGAATCCACAGT+TGG + Chr3:56650642-56650661 MsG0380014573.01.T01:CDS 45.0%
TGAAGCTACCAAGCTTGCAT+TGG + Chr3:56650851-56650870 MsG0380014573.01.T01:CDS 45.0%
TGAATGGAAACGGAGGGTAA+GGG - Chr3:56648434-56648453 None:intergenic 45.0%
TGCAATGACAATATCGACGG+AGG + Chr3:56651016-56651035 MsG0380014573.01.T01:CDS 45.0%
TGCTTCTTCCAATGCAAGCT+TGG - Chr3:56650862-56650881 None:intergenic 45.0%
! ACTGTTACTTCGGAGCTTGA+TGG + Chr3:56650498-56650517 MsG0380014573.01.T01:CDS 45.0%
! CAAAAGTACGGTGACTCTGA+TGG + Chr3:56649985-56650004 MsG0380014573.01.T01:CDS 45.0%
! GAGAGAGAGAGAGATGGTTT+TGG - Chr3:56646339-56646358 None:intergenic 45.0%
! GCTGTGTCTCTATTTGGTGA+AGG + Chr3:56647596-56647615 MsG0380014573.01.T01:CDS 45.0%
! GGATCTGCTTCTTATTTGCC+TGG + Chr3:56651503-56651522 MsG0380014573.01.T01:CDS 45.0%
! GTTGTAATTGGGGTGGACTT+TGG + Chr3:56648824-56648843 MsG0380014573.01.T01:intron 45.0%
! TAAGGTTAGAGGTGCATCTG+AGG + Chr3:56650728-56650747 MsG0380014573.01.T01:CDS 45.0%
!! AGCCATCTCAGCCTTTTTCA+AGG - Chr3:56651213-56651232 None:intergenic 45.0%
!! GCTTTTGAGAATCTGGGTTG+TGG + Chr3:56646501-56646520 MsG0380014573.01.T01:intron 45.0%
!! TCACTAGAGAGTTTTGGCCA+AGG + Chr3:56649759-56649778 MsG0380014573.01.T01:intron 45.0%
!!! CCAACCTCTGGTTTTAGACT+GGG - Chr3:56647536-56647555 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr3:56649415-56649396 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+GGG + Chr3:56649396-56649415 MsG0380014573.01.T01:intron 45.0%
!!! GCGACACTCATTTTGAAACG+GGG + Chr3:56649395-56649414 MsG0380014573.01.T01:intron 45.0%
!!! GCTTTTGGCTTCTTAAGGAC+AGG - Chr3:56647641-56647660 None:intergenic 45.0%
!!! TCCAACCTCTGGTTTTAGAC+TGG - Chr3:56647537-56647556 None:intergenic 45.0%
!!! TCTGGTTTTAGACTGGGAGA+GGG - Chr3:56647530-56647549 None:intergenic 45.0%
!!! TTCAGCTGCTTTTGCTGCTT+CGG - Chr3:56650916-56650935 None:intergenic 45.0%
!!! TTGGTGAAGGTGCTTTTTCC+GGG + Chr3:56647609-56647628 MsG0380014573.01.T01:CDS 45.0%
!!! AATTTTCTATTTAATATTTT+TGG + Chr3:56646742-56646761 MsG0380014573.01.T01:intron 5.0%
!!! ATTTTTATATTTTAATTGTT+TGG + Chr3:56646766-56646785 MsG0380014573.01.T01:intron 5.0%
AAACGGAGGGTAAGGGTTAG+AGG - Chr3:56648427-56648446 None:intergenic 50.0%
AACAGACTGAAAAGGTGGGC+TGG - Chr3:56647570-56647589 None:intergenic 50.0%
AAGAGTGAGTTAGGCGAGTG+GGG - Chr3:56648373-56648392 None:intergenic 50.0%
AGATCTGAGGAAAACCCGTC+AGG + Chr3:56650092-56650111 MsG0380014573.01.T01:CDS 50.0%
AGCACAGGTAGAAGCTGTGA+AGG + Chr3:56651109-56651128 MsG0380014573.01.T01:CDS 50.0%
AGCAGCAAAGAAAGCGGTTG+AGG + Chr3:56651235-56651254 MsG0380014573.01.T01:CDS 50.0%
AGCTGACACTCTTGCATTCG+AGG - Chr3:56650130-56650149 None:intergenic 50.0%
ATGGCAGTGAATGGAAACGG+AGG - Chr3:56648441-56648460 None:intergenic 50.0%
CATCCGAAACTGAGGAAGCA+CGG + Chr3:56650778-56650797 MsG0380014573.01.T01:CDS 50.0%
CTTAAGGACAGGTCTTTCCC+CGG - Chr3:56647630-56647649 None:intergenic 50.0%
GAAAGAGTGAGTTAGGCGAG+TGG - Chr3:56648375-56648394 None:intergenic 50.0%
GACATGCAGATTCCCAACTG+TGG - Chr3:56650658-56650677 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+TGG - Chr3:56646345-56646364 None:intergenic 50.0%
GCAGCAAAGAAAGCGGTTGA+GGG + Chr3:56651236-56651255 MsG0380014573.01.T01:CDS 50.0%
GGCCTTGAAAAAGGCTGAGA+TGG + Chr3:56651208-56651227 MsG0380014573.01.T01:CDS 50.0%
GGCTGAAGCAGCAAAGAAAG+CGG + Chr3:56651229-56651248 MsG0380014573.01.T01:CDS 50.0%
GGTGACTCTGATGGAGCAAA+CGG + Chr3:56649994-56650013 MsG0380014573.01.T01:CDS 50.0%
GTGAATGGAAACGGAGGGTA+AGG - Chr3:56648435-56648454 None:intergenic 50.0%
GTGTCAATCTCTCCAACCTC+TGG - Chr3:56647548-56647567 None:intergenic 50.0%
TCCAATGTTGTACGAGGAGG+TGG - Chr3:56651389-56651408 None:intergenic 50.0%
TCCACCTCCTCGTACAACAT+TGG + Chr3:56651385-56651404 MsG0380014573.01.T01:CDS 50.0%
TGCGGCTCTGCATACAGAAA+TGG + Chr3:56650440-56650459 MsG0380014573.01.T01:CDS 50.0%
TGGCAGTGAATGGAAACGGA+GGG - Chr3:56648440-56648459 None:intergenic 50.0%
TGTGAAGGCTAGCGAAAACG+AGG + Chr3:56651124-56651143 MsG0380014573.01.T01:CDS 50.0%
! ATAGGGCTAGAGAGTGCAGA+CGG + Chr3:56648143-56648162 MsG0380014573.01.T01:intron 50.0%
! CCCAGTCTAAAACCAGAGGT+TGG + Chr3:56647533-56647552 MsG0380014573.01.T01:CDS 50.0%
! CTCTCCCAGTCTAAAACCAG+AGG + Chr3:56647529-56647548 MsG0380014573.01.T01:CDS 50.0%
! CTTGGTAGAGACTCTGAAGG+TGG + Chr3:56650572-56650591 MsG0380014573.01.T01:CDS 50.0%
! GTTAGGCGAGTGGGGTTTTT+CGG - Chr3:56648365-56648384 None:intergenic 50.0%
! TCAGAGTGCCTGCTAGCAAT+GGG - Chr3:56648091-56648110 None:intergenic 50.0%
!! CTACTGGCTCTTAGGTTCAC+TGG - Chr3:56647192-56647211 None:intergenic 50.0%
!!! CTCTGGTTTTAGACTGGGAG+AGG - Chr3:56647531-56647550 None:intergenic 50.0%
!!! TGGTGAAGGTGCTTTTTCCG+GGG + Chr3:56647610-56647629 MsG0380014573.01.T01:CDS 50.0%
GAGAGCCAGTAGCAGTTTGC+CGG - Chr3:56647508-56647527 None:intergenic 55.0%
GTCTGAGCTCGAAGCCTGTT+CGG + Chr3:56650695-56650714 MsG0380014573.01.T01:CDS 55.0%
TGGAGCTTGAAAGGGCCCAA+AGG + Chr3:56649869-56649888 MsG0380014573.01.T01:CDS 55.0%
TTGAGGGTGAGCTTCGAAGG+TGG + Chr3:56651252-56651271 MsG0380014573.01.T01:CDS 55.0%
! AGTGGATGCTGCGAAAGCAC+AGG + Chr3:56651094-56651113 MsG0380014573.01.T01:CDS 55.0%
! CTCAGAGTGCCTGCTAGCAA+TGG - Chr3:56648092-56648111 None:intergenic 55.0%
!! AGTGGGGTTTTTCGGCCTTC+GGG - Chr3:56648357-56648376 None:intergenic 55.0%
!! GAGTGGGGTTTTTCGGCCTT+CGG - Chr3:56648358-56648377 None:intergenic 55.0%
AAGCGGCAGAAGCTGCAGCT+CGG + Chr3:56651294-56651313 MsG0380014573.01.T01:CDS 60.0%
AGGGTGAGCTTCGAAGGTGG+CGG + Chr3:56651255-56651274 MsG0380014573.01.T01:CDS 60.0%
CCGCCGTGCTTCCTCAGTTT+CGG - Chr3:56650784-56650803 None:intergenic 60.0%
CGGTTGAGGGTGAGCTTCGA+AGG + Chr3:56651249-56651268 MsG0380014573.01.T01:CDS 60.0%
CTGATGGAGCAAACGGTGCC+TGG + Chr3:56650001-56650020 MsG0380014573.01.T01:CDS 60.0%
! CCGAAACTGAGGAAGCACGG+CGG + Chr3:56650781-56650800 MsG0380014573.01.T01:CDS 60.0%
! CGAAACTGAGGAAGCACGGC+GGG + Chr3:56650782-56650801 MsG0380014573.01.T01:CDS 60.0%
GGGTGAGCTTCGAAGGTGGC+GGG + Chr3:56651256-56651275 MsG0380014573.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 56646292 56651784 56646292 ID=MsG0380014573.01;Name=MsG0380014573.01
Chr3 mRNA 56646292 56651784 56646292 ID=MsG0380014573.01.T01;Parent=MsG0380014573.01;Name=MsG0380014573.01.T01;_AED=0.29;_eAED=0.29;_QI=174|1|1|1|0.5|0.33|3|243|652
Chr3 exon 56646292 56646426 56646292 ID=MsG0380014573.01.T01:exon:28858;Parent=MsG0380014573.01.T01
Chr3 exon 56647452 56647673 56647452 ID=MsG0380014573.01.T01:exon:28859;Parent=MsG0380014573.01.T01
Chr3 exon 56649766 56651784 56649766 ID=MsG0380014573.01.T01:exon:28860;Parent=MsG0380014573.01.T01
Chr3 five_prime_UTR 56646292 56646426 56646292 ID=MsG0380014573.01.T01:five_prime_utr;Parent=MsG0380014573.01.T01
Chr3 five_prime_UTR 56647452 56647490 56647452 ID=MsG0380014573.01.T01:five_prime_utr;Parent=MsG0380014573.01.T01
Chr3 CDS 56647491 56647673 56647491 ID=MsG0380014573.01.T01:cds;Parent=MsG0380014573.01.T01
Chr3 CDS 56649766 56651541 56649766 ID=MsG0380014573.01.T01:cds;Parent=MsG0380014573.01.T01
Chr3 three_prime_UTR 56651542 56651784 56651542 ID=MsG0380014573.01.T01:three_prime_utr;Parent=MsG0380014573.01.T01
Gene Sequence

>MsG0380014573.01.T01

ATGGTCGCAAAAATCCGGCAAACTGCTACTGGCTCTCCCTCTCCCAGTCTAAAACCAGAGGTTGGAGAGATTGACACCAGCCCACCTTTTCAGTCTGTTAAAGCTGCTGTGTCTCTATTTGGTGAAGGTGCTTTTTCCGGGGAAAGACCTGTCCTTAAGAAGCCAAAAGCTTATTCTGCTGAGAGAGTTTTGGCCAAGGAGACGCAACTTCATGTAGCCGAAAAAGAGCTGAACAAGTTAAAGGAACAAGTAAAGAACGCTGAAACTACTAAGGCTCAAGCTCTTGTGGAGCTTGAAAGGGCCCAAAGGACAGTCGATGATTTGACACAGAAGCTAAAACTTATTACTGAATCTAGGGAGTTGGCAACGAAAGCAACAGAAGCTGCAAAAAGTCAGGCAAAACAAAAGTACGGTGACTCTGATGGAGCAAACGGTGCCTGGAAAGAAGAGTTAGAAAATGCAGTTCAAAGGTATGCATCTATCATGACAGAACTTGATGCTGCTAAACAAGATCTGAGGAAAACCCGTCAGGAATACGATTCATCCTCGAATGCAAGAGTGTCAGCTGTCAAGAGAACAGAAGAAGCTGAAAATGCAATGAAGGAAAACACAGAAAGAGTATCTGAGCTGTCAAAAGAAATTTCAGCTGTAAAGGAGTCAATTGAGCAAACAAAGCTAGCATATGTGGAATCACAGCAACAGCAAGCATTGGTATTATCTGAAAAAGATGCTCTTAGACAATCATACAAAGCTACCCTTGAACAATCCAAAAAGAAATTACTTGCTTTGAAAAAGGAATTTAATCCCGAAATCACAAAAAGTCTTGAAGCACAGTTGGCCGAGACAATGAATGAAATTGCGGCTCTGCATACAGAAATGGAAAACAAAAGATCGTCTGACTTGGACTCTGTGAAAACTGTTACTTCGGAGCTTGATGGTGCGAAAGAATCACTGCAGAAAGTAGTAGATGAAGAAAACACTCTTAGAAGCTTGGTAGAGACTCTGAAGGTGGAACTAGAGAATGTAAAGAAAGAACATTCTGAGTTGAAGGAAAAAGAGTCCGAATTGGAATCCACAGTTGGGAATCTGCATGTCAAACTTCGCAAAAGTAAGTCTGAGCTCGAAGCCTGTTCGGCTGAAGAATCTAAGGTTAGAGGTGCATCTGAGGAAATGATCTTGACGCTGAGTCAGTTAACATCCGAAACTGAGGAAGCACGGCGGGAAGCAGAAGATATGAAGAACAAGACAGAAGAGCTAAAGAAAGAAGCTGAAGCTACCAAGCTTGCATTGGAAGAAGCAGAGAAAAAACTGAAAGAAGCAACGGAAGAAGCCGAAGCAGCAAAAGCAGCTGAAGCTAGTGCAATCGAGCAGATTACAGTGCTAACTGAAAGGACTAGTGCAAGACGTGCATCTACATCGTCAGAATCCGGTGCTGCAATGACAATATCGACGGAGGAGTTCGAGTCTCTAAAACGGAAAGTTGAGGAATCCGATAAATTAGCTGACATGAAAGTGGATGCTGCGAAAGCACAGGTAGAAGCTGTGAAGGCTAGCGAAAACGAGGTTTTGAAAAAGTTGGAGGCAACTCAGAAGGAGATTGAAGATATGAAAACTGCAACACAGGAGGCCTTGAAAAAGGCTGAGATGGCTGAAGCAGCAAAGAAAGCGGTTGAGGGTGAGCTTCGAAGGTGGCGGGAGCGAGAACAGAAAAAAGCGGCAGAAGCTGCAGCTCGGATACTAGCCGAAACACAGATGTCATCGGAATCATCTCCTCAGCATTATAGGATTCAAAAGCAGAATGTTCCACCTCCTCGTACAACATTGGAAGTGAAGAAGTTAGATAAAGAGAAGATTTCAGTTTCGAAGAAAATTAATATTAGTGGTATCTTTCAAAGGAAGAAAAGCAATATTGTTGAGGATGGATCTGCTTCTTATTTGCCTGGTGAGAATCCTGTATAG

Protein sequence

>MsG0380014573.01.T01

MVAKIRQTATGSPSPSLKPEVGEIDTSPPFQSVKAAVSLFGEGAFSGERPVLKKPKAYSAERVLAKETQLHVAEKELNKLKEQVKNAETTKAQALVELERAQRTVDDLTQKLKLITESRELATKATEAAKSQAKQKYGDSDGANGAWKEELENAVQRYASIMTELDAAKQDLRKTRQEYDSSSNARVSAVKRTEEAENAMKENTERVSELSKEISAVKESIEQTKLAYVESQQQQALVLSEKDALRQSYKATLEQSKKKLLALKKEFNPEITKSLEAQLAETMNEIAALHTEMENKRSSDLDSVKTVTSELDGAKESLQKVVDEENTLRSLVETLKVELENVKKEHSELKEKESELESTVGNLHVKLRKSKSELEACSAEESKVRGASEEMILTLSQLTSETEEARREAEDMKNKTEELKKEAEATKLALEEAEKKLKEATEEAEAAKAAEASAIEQITVLTERTSARRASTSSESGAAMTISTEEFESLKRKVEESDKLADMKVDAAKAQVEAVKASENEVLKKLEATQKEIEDMKTATQEALKKAEMAEAAKKAVEGELRRWREREQKKAAEAAARILAETQMSSESSPQHYRIQKQNVPPPRTTLEVKKLDKEKISVSKKINISGIFQRKKSNIVEDGSASYLPGENPV*